Query 011624
Match_columns 481
No_of_seqs 550 out of 4052
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 1E-85 2.2E-90 667.3 40.2 398 84-481 1-399 (451)
2 TIGR01425 SRP54_euk signal rec 100.0 2.5E-72 5.5E-77 582.5 39.2 398 84-481 1-404 (429)
3 PRK10867 signal recognition pa 100.0 2.2E-71 4.8E-76 578.8 40.5 395 84-481 1-396 (433)
4 KOG0780 Signal recognition par 100.0 1.1E-71 2.5E-76 552.2 34.1 397 84-481 2-400 (483)
5 TIGR00959 ffh signal recogniti 100.0 9.8E-70 2.1E-74 566.2 40.0 397 85-481 1-400 (428)
6 PRK00771 signal recognition pa 100.0 6.1E-68 1.3E-72 554.1 38.8 391 88-481 1-392 (437)
7 COG0552 FtsY Signal recognitio 100.0 1.3E-48 2.9E-53 386.5 30.6 293 82-378 31-340 (340)
8 PRK14974 cell division protein 100.0 1.9E-44 4E-49 366.0 33.6 273 105-378 58-335 (336)
9 PRK10416 signal recognition pa 100.0 6.8E-43 1.5E-47 353.4 33.0 291 81-379 13-316 (318)
10 TIGR00064 ftsY signal recognit 100.0 2.9E-41 6.2E-46 335.1 31.7 265 109-377 2-272 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 2E-38 4.3E-43 300.4 21.1 196 183-378 1-196 (196)
12 PRK11889 flhF flagellar biosyn 100.0 8.7E-35 1.9E-39 296.0 29.9 258 109-379 175-435 (436)
13 COG1797 CobB Cobyrinic acid a, 100.0 3.3E-36 7.2E-41 306.3 19.0 265 186-477 3-284 (451)
14 PRK12724 flagellar biosynthesi 100.0 2.4E-34 5.3E-39 296.4 31.6 285 81-377 112-415 (432)
15 KOG0781 Signal recognition par 100.0 6.6E-35 1.4E-39 296.6 24.2 282 92-373 280-582 (587)
16 PRK12723 flagellar biosynthesi 100.0 1.4E-33 2.9E-38 291.5 32.5 255 112-379 109-370 (388)
17 PRK12726 flagellar biosynthesi 100.0 1E-33 2.2E-38 287.5 30.7 255 114-380 144-401 (407)
18 PRK14723 flhF flagellar biosyn 100.0 1.2E-33 2.5E-38 309.5 32.9 251 113-380 126-382 (767)
19 PRK05703 flhF flagellar biosyn 100.0 8.5E-32 1.8E-36 282.4 31.8 254 108-379 157-415 (424)
20 PRK06995 flhF flagellar biosyn 100.0 1.8E-31 3.9E-36 281.3 31.7 252 111-380 195-450 (484)
21 PRK06731 flhF flagellar biosyn 100.0 2.8E-31 6E-36 262.3 24.7 259 107-379 8-269 (270)
22 COG1419 FlhF Flagellar GTP-bin 100.0 3.8E-31 8.2E-36 269.3 25.0 212 159-379 181-396 (407)
23 PRK14722 flhF flagellar biosyn 100.0 1.2E-29 2.7E-34 260.2 31.1 251 115-379 77-339 (374)
24 PRK14721 flhF flagellar biosyn 100.0 7.2E-29 1.6E-33 258.0 30.2 247 115-380 135-385 (420)
25 PRK12727 flagellar biosynthesi 100.0 4.2E-27 9.1E-32 248.0 28.9 244 115-379 295-542 (559)
26 PRK13896 cobyrinic acid a,c-di 99.9 1.2E-25 2.5E-30 235.4 18.9 252 186-476 4-270 (433)
27 cd03115 SRP The signal recogni 99.9 5.4E-25 1.2E-29 204.1 20.5 172 185-356 2-173 (173)
28 TIGR00379 cobB cobyrinic acid 99.9 1.1E-22 2.4E-27 215.7 19.9 264 186-476 2-282 (449)
29 PRK01077 cobyrinic acid a,c-di 99.9 4.5E-22 9.7E-27 211.4 20.9 265 184-475 5-282 (451)
30 TIGR03499 FlhF flagellar biosy 99.8 2.4E-18 5.1E-23 172.2 20.9 149 110-275 132-282 (282)
31 PRK06278 cobyrinic acid a,c-di 99.7 1.4E-15 3.1E-20 161.2 18.7 222 160-421 215-459 (476)
32 cd02037 MRP-like MRP (Multiple 99.7 3E-15 6.4E-20 138.4 18.3 153 185-360 2-167 (169)
33 cd02117 NifH_like This family 99.7 1.2E-15 2.5E-20 146.4 15.3 167 184-359 1-210 (212)
34 PRK11670 antiporter inner memb 99.6 1.5E-14 3.1E-19 150.0 20.2 170 184-361 108-316 (369)
35 PRK13235 nifH nitrogenase redu 99.6 7.7E-15 1.7E-19 146.2 15.6 172 184-362 2-214 (274)
36 PRK13232 nifH nitrogenase redu 99.6 5.2E-15 1.1E-19 147.3 13.9 170 184-361 2-211 (273)
37 cd02040 NifH NifH gene encodes 99.6 1.8E-14 4E-19 142.5 15.6 169 184-361 2-212 (270)
38 TIGR01969 minD_arch cell divis 99.6 3.7E-14 8.1E-19 138.5 17.2 164 185-359 3-195 (251)
39 TIGR01007 eps_fam capsular exo 99.6 5.2E-14 1.1E-18 134.0 17.3 144 183-335 17-193 (204)
40 PRK13233 nifH nitrogenase redu 99.6 2.7E-14 5.9E-19 142.2 15.5 169 184-360 3-213 (275)
41 PRK13236 nitrogenase reductase 99.6 4.6E-14 9.9E-19 142.3 16.9 227 183-424 6-276 (296)
42 cd03110 Fer4_NifH_child This p 99.6 7.9E-14 1.7E-18 129.8 17.0 158 185-358 2-178 (179)
43 PRK13185 chlL protochlorophyll 99.6 8.1E-14 1.7E-18 138.4 17.9 165 184-360 3-207 (270)
44 PHA02518 ParA-like protein; Pr 99.6 9.5E-14 2.1E-18 132.1 17.4 153 185-352 2-164 (211)
45 COG3640 CooC CO dehydrogenase 99.6 3.3E-14 7.1E-19 135.3 12.8 165 185-363 2-222 (255)
46 TIGR01281 DPOR_bchL light-inde 99.6 8.1E-14 1.7E-18 138.2 15.8 163 185-359 2-204 (268)
47 COG0489 Mrp ATPases involved i 99.6 1.2E-13 2.5E-18 137.1 16.6 166 183-359 57-256 (265)
48 cd02032 Bchl_like This family 99.5 1.8E-13 3.9E-18 135.7 17.7 166 185-362 2-207 (267)
49 PRK13234 nifH nitrogenase redu 99.5 8E-14 1.7E-18 140.5 15.2 172 183-361 4-215 (295)
50 PRK00784 cobyric acid synthase 99.5 7E-14 1.5E-18 150.2 15.6 222 185-474 4-286 (488)
51 TIGR03029 EpsG chain length de 99.5 2.8E-13 6.1E-18 134.8 17.1 141 182-331 102-274 (274)
52 cd02036 MinD Bacterial cell di 99.5 3.2E-13 6.9E-18 124.9 16.0 145 185-359 2-151 (179)
53 CHL00072 chlL photochlorophyll 99.5 1.3E-13 2.9E-18 138.6 14.5 163 186-360 3-205 (290)
54 COG2894 MinD Septum formation 99.5 1.3E-13 2.9E-18 129.5 13.3 171 184-365 3-217 (272)
55 CHL00175 minD septum-site dete 99.5 3.2E-13 6.9E-18 134.9 17.0 169 183-361 15-219 (281)
56 PRK13849 putative crown gall t 99.5 6.4E-13 1.4E-17 129.3 18.6 92 185-278 3-96 (231)
57 PRK13230 nitrogenase reductase 99.5 1.6E-13 3.4E-18 137.1 14.6 169 184-360 2-211 (279)
58 PF01656 CbiA: CobQ/CobB/MinD/ 99.5 1.3E-13 2.9E-18 129.0 13.2 160 185-352 1-181 (195)
59 TIGR01287 nifH nitrogenase iro 99.5 1.6E-13 3.5E-18 136.6 13.8 171 184-362 1-212 (275)
60 PRK09841 cryptic autophosphory 99.5 5.8E-13 1.3E-17 149.6 19.9 148 181-337 529-708 (726)
61 TIGR03371 cellulose_yhjQ cellu 99.5 6.2E-13 1.3E-17 129.7 17.4 160 185-352 4-200 (246)
62 TIGR03018 pepcterm_TyrKin exop 99.5 1.3E-12 2.9E-17 124.9 19.2 140 182-330 34-207 (207)
63 PRK13869 plasmid-partitioning 99.5 5.8E-13 1.3E-17 139.8 17.8 41 183-223 121-162 (405)
64 TIGR00313 cobQ cobyric acid sy 99.5 9.7E-13 2.1E-17 140.7 19.4 218 186-475 1-280 (475)
65 KOG3022 Predicted ATPase, nucl 99.5 3.4E-13 7.5E-18 130.8 14.2 169 183-359 48-256 (300)
66 TIGR02016 BchX chlorophyllide 99.5 3.3E-13 7.1E-18 136.1 14.7 170 184-363 1-218 (296)
67 cd02033 BchX Chlorophyllide re 99.5 9E-14 2E-18 141.4 10.2 169 181-363 29-243 (329)
68 PRK11519 tyrosine kinase; Prov 99.5 1.2E-12 2.5E-17 147.0 20.0 146 181-335 524-701 (719)
69 TIGR01968 minD_bact septum sit 99.5 2.7E-12 5.8E-17 126.0 18.4 166 184-360 2-203 (261)
70 PRK13231 nitrogenase reductase 99.5 7.2E-13 1.6E-17 131.2 13.7 165 184-359 3-203 (264)
71 PRK10818 cell division inhibit 99.5 2.6E-12 5.6E-17 127.5 17.4 168 184-361 3-214 (270)
72 TIGR03453 partition_RepA plasm 99.4 4.2E-12 9.1E-17 132.8 19.1 43 181-223 102-145 (387)
73 TIGR01005 eps_transp_fam exopo 99.4 2E-12 4.3E-17 146.2 16.5 148 181-337 544-723 (754)
74 cd02035 ArsA ArsA ATPase funct 99.4 3.1E-12 6.8E-17 123.2 14.9 148 185-335 1-183 (217)
75 cd00550 ArsA_ATPase Oxyanion-t 99.4 9.2E-12 2E-16 122.9 18.6 40 184-223 1-40 (254)
76 PHA02519 plasmid partition pro 99.4 3.5E-12 7.5E-17 133.1 15.7 43 181-223 104-148 (387)
77 PRK10037 cell division protein 99.4 6.7E-12 1.5E-16 123.4 16.9 140 185-336 4-177 (250)
78 PRK09435 membrane ATPase/prote 99.4 3.8E-11 8.2E-16 122.4 22.1 146 181-337 54-209 (332)
79 PF07015 VirC1: VirC1 protein; 99.4 1.4E-11 3E-16 118.4 17.0 90 183-278 2-96 (231)
80 TIGR03815 CpaE_hom_Actino heli 99.4 1.3E-11 2.9E-16 125.8 18.1 164 182-358 92-287 (322)
81 TIGR00750 lao LAO/AO transport 99.4 1E-11 2.3E-16 125.5 16.5 146 181-337 32-187 (300)
82 PRK13705 plasmid-partitioning 99.4 6.2E-12 1.3E-16 131.3 14.4 43 181-223 104-148 (388)
83 cd02038 FleN-like FleN is a me 99.4 1.2E-11 2.5E-16 111.0 13.3 111 185-341 2-116 (139)
84 COG1703 ArgK Putative periplas 99.4 5.9E-11 1.3E-15 116.9 19.1 143 181-334 49-201 (323)
85 COG0455 flhG Antiactivator of 99.4 2.8E-11 6.1E-16 119.6 17.0 145 184-337 3-181 (262)
86 cd03114 ArgK-like The function 99.3 1.6E-11 3.5E-16 111.4 13.1 136 185-333 1-148 (148)
87 COG1192 Soj ATPases involved i 99.3 2E-11 4.3E-16 120.4 14.0 41 183-223 2-44 (259)
88 PF03308 ArgK: ArgK protein; 99.3 5.7E-12 1.2E-16 122.5 8.1 139 182-334 28-179 (266)
89 PF00142 Fer4_NifH: 4Fe-4S iro 99.3 2.2E-11 4.7E-16 118.7 11.4 173 184-363 1-214 (273)
90 cd03111 CpaE_like This protein 99.3 5.5E-11 1.2E-15 101.7 12.4 73 185-306 2-75 (106)
91 cd02042 ParA ParA and ParB of 99.3 7.2E-11 1.6E-15 100.0 12.3 94 186-330 3-104 (104)
92 PF06564 YhjQ: YhjQ protein; 99.3 1.3E-10 2.8E-15 113.2 15.4 142 185-338 3-179 (243)
93 PF09140 MipZ: ATPase MipZ; I 99.3 1E-11 2.2E-16 120.0 7.6 93 185-278 3-111 (261)
94 PRK00090 bioD dithiobiotin syn 99.2 2.4E-10 5.1E-15 110.2 15.8 170 186-363 2-204 (222)
95 COG1348 NifH Nitrogenase subun 99.2 2E-10 4.3E-15 109.1 13.7 174 184-364 2-216 (278)
96 PRK13768 GTPase; Provisional 99.2 1.6E-10 3.4E-15 114.1 12.8 152 183-337 2-177 (253)
97 PF02978 SRP_SPB: Signal pepti 99.2 3.9E-12 8.4E-17 108.2 0.5 73 409-481 1-78 (104)
98 PF02374 ArsA_ATPase: Anion-tr 99.1 2.8E-10 6.2E-15 115.2 11.8 40 184-223 2-41 (305)
99 KOG1532 GTPase XAB1, interacts 99.1 5.3E-10 1.2E-14 108.5 10.2 124 181-305 17-157 (366)
100 PF13500 AAA_26: AAA domain; P 99.1 4.8E-09 1E-13 99.5 16.0 166 185-365 2-196 (199)
101 COG1149 MinD superfamily P-loo 99.0 2.4E-09 5.1E-14 104.4 12.3 85 264-363 162-251 (284)
102 COG0003 ArsA Predicted ATPase 99.0 6.3E-10 1.4E-14 112.9 8.4 40 183-222 2-41 (322)
103 cd02034 CooC The accessory pro 99.0 3.4E-09 7.3E-14 92.3 10.5 88 186-277 2-98 (116)
104 TIGR00347 bioD dethiobiotin sy 99.0 5E-09 1.1E-13 96.3 11.2 134 191-330 6-166 (166)
105 PRK12374 putative dithiobiotin 98.9 4.2E-08 9.1E-13 95.5 16.6 165 186-363 5-205 (231)
106 PF13614 AAA_31: AAA domain; P 98.9 5E-09 1.1E-13 94.9 9.0 115 184-306 1-151 (157)
107 COG1159 Era GTPase [General fu 98.9 8.7E-09 1.9E-13 101.9 10.9 192 182-422 5-207 (298)
108 PRK05632 phosphate acetyltrans 98.9 3.2E-08 6.9E-13 110.7 15.0 172 186-373 5-208 (684)
109 cd03109 DTBS Dethiobiotin synt 98.8 5.2E-08 1.1E-12 86.9 13.0 122 187-358 4-133 (134)
110 cd01983 Fer4_NifH The Fer4_Nif 98.8 3.5E-08 7.5E-13 80.9 11.0 34 185-218 1-34 (99)
111 COG0378 HypB Ni2+-binding GTPa 98.8 2.3E-08 4.9E-13 93.4 9.9 145 181-340 10-160 (202)
112 TIGR00073 hypB hydrogenase acc 98.8 1.6E-07 3.4E-12 89.8 16.2 140 180-336 19-162 (207)
113 PF03029 ATP_bind_1: Conserved 98.8 1.3E-08 2.9E-13 99.5 8.4 35 188-222 1-35 (238)
114 COG0132 BioD Dethiobiotin synt 98.8 2.8E-07 6E-12 88.8 17.0 168 184-363 3-206 (223)
115 PF02492 cobW: CobW/HypB/UreG, 98.7 8.6E-08 1.9E-12 89.5 11.6 147 185-338 2-157 (178)
116 cd04170 EF-G_bact Elongation f 98.7 2.7E-07 5.9E-12 91.7 15.6 161 263-430 61-242 (268)
117 cd03112 CobW_like The function 98.7 1.8E-07 3.8E-12 85.8 13.0 144 185-334 2-158 (158)
118 cd01886 EF-G Elongation factor 98.7 3.8E-07 8.2E-12 91.0 14.6 161 263-430 61-244 (270)
119 COG1341 Predicted GTPase or GT 98.6 2.1E-07 4.5E-12 95.7 11.7 124 180-305 70-210 (398)
120 PRK13886 conjugal transfer pro 98.6 4.5E-07 9.7E-12 88.5 13.0 42 185-226 5-46 (241)
121 PF02881 SRP54_N: SRP54-type p 98.6 4.2E-07 9.1E-12 72.6 10.0 75 88-165 1-75 (75)
122 smart00053 DYNc Dynamin, GTPas 98.6 6.6E-07 1.4E-11 87.6 13.3 161 185-351 28-221 (240)
123 cd04168 TetM_like Tet(M)-like 98.6 1.9E-06 4.2E-11 84.3 16.0 145 263-430 61-211 (237)
124 COG0529 CysC Adenylylsulfate k 98.5 6E-07 1.3E-11 82.6 9.8 46 180-225 20-65 (197)
125 PRK00089 era GTPase Era; Revie 98.5 6.4E-07 1.4E-11 90.0 10.5 121 182-337 4-128 (292)
126 PRK10463 hydrogenase nickel in 98.5 1.3E-06 2.9E-11 87.3 12.1 138 182-336 103-244 (290)
127 TIGR02237 recomb_radB DNA repa 98.5 1.1E-06 2.4E-11 83.7 11.0 57 166-229 2-58 (209)
128 PRK09361 radB DNA repair and r 98.4 2.1E-06 4.6E-11 82.8 12.0 61 163-230 10-70 (225)
129 cd04169 RF3 RF3 subfamily. Pe 98.4 2.7E-06 5.9E-11 84.7 12.8 84 263-353 68-156 (267)
130 COG1066 Sms Predicted ATP-depe 98.4 2.3E-06 5E-11 88.1 12.3 100 162-275 79-178 (456)
131 TIGR00436 era GTP-binding prot 98.4 7.8E-07 1.7E-11 88.6 8.8 117 185-336 2-121 (270)
132 PRK12337 2-phosphoglycerate ki 98.4 6.4E-07 1.4E-11 94.4 8.2 109 110-224 176-292 (475)
133 cd01394 radB RadB. The archaea 98.4 2.6E-06 5.7E-11 81.7 11.9 53 163-222 6-58 (218)
134 TIGR00101 ureG urease accessor 98.4 8.7E-06 1.9E-10 77.5 15.2 140 183-336 1-151 (199)
135 COG1618 Predicted nucleotide k 98.3 1.8E-06 4E-11 78.4 8.4 112 183-305 5-139 (179)
136 PF02421 FeoB_N: Ferrous iron 98.3 1.3E-06 2.9E-11 79.8 7.7 132 186-353 3-139 (156)
137 PHA02542 41 41 helicase; Provi 98.3 0.00011 2.3E-09 79.0 23.5 82 128-223 148-230 (473)
138 PF01583 APS_kinase: Adenylyls 98.3 1.4E-06 2.9E-11 79.7 7.7 44 182-225 1-44 (156)
139 PRK14493 putative bifunctional 98.3 9.3E-07 2E-11 88.2 7.0 90 184-278 2-100 (274)
140 PRK15494 era GTPase Era; Provi 98.3 1.6E-06 3.5E-11 89.3 9.0 190 183-422 52-251 (339)
141 PRK06067 flagellar accessory p 98.3 9.9E-06 2.1E-10 78.8 14.0 107 163-276 12-131 (234)
142 cd04163 Era Era subfamily. Er 98.3 1E-05 2.2E-10 72.3 13.0 119 183-336 3-125 (168)
143 PRK11537 putative GTP-binding 98.3 6.3E-06 1.4E-10 84.1 12.7 159 184-348 5-176 (318)
144 TIGR02012 tigrfam_recA protein 98.3 6E-06 1.3E-10 84.0 12.0 100 163-277 41-145 (321)
145 KOG2825 Putative arsenite-tran 98.3 2.2E-06 4.7E-11 82.8 8.2 41 183-223 19-59 (323)
146 smart00382 AAA ATPases associa 98.3 8.9E-06 1.9E-10 70.1 11.4 91 183-279 2-92 (148)
147 TIGR03878 thermo_KaiC_2 KaiC d 98.3 3.8E-06 8.2E-11 83.3 10.2 40 182-221 35-74 (259)
148 PRK04220 2-phosphoglycerate ki 98.3 3.4E-06 7.3E-11 84.8 9.8 101 117-223 22-128 (301)
149 TIGR02655 circ_KaiC circadian 98.2 7.2E-06 1.6E-10 88.4 12.0 102 163-275 250-363 (484)
150 cd01121 Sms Sms (bacterial rad 98.2 9E-06 2E-10 84.6 12.1 99 163-276 69-169 (372)
151 PRK00889 adenylylsulfate kinas 98.2 7.8E-06 1.7E-10 75.8 10.4 43 181-223 2-44 (175)
152 PRK08533 flagellar accessory p 98.2 5.8E-06 1.3E-10 80.5 9.8 108 163-277 11-129 (230)
153 PRK09354 recA recombinase A; P 98.2 1.3E-05 2.9E-10 82.2 12.3 100 163-277 46-150 (349)
154 TIGR03877 thermo_KaiC_1 KaiC d 98.2 1.6E-05 3.5E-10 77.6 12.4 61 163-230 8-68 (237)
155 cd00983 recA RecA is a bacter 98.2 1.1E-05 2.4E-10 82.2 11.5 100 163-277 41-145 (325)
156 cd01120 RecA-like_NTPases RecA 98.2 2.3E-05 5E-10 70.2 12.2 93 185-277 1-97 (165)
157 TIGR02238 recomb_DMC1 meiotic 98.2 5.7E-05 1.2E-09 76.9 16.3 164 95-276 13-202 (313)
158 COG1492 CobQ Cobyric acid synt 98.2 4.5E-06 9.7E-11 88.1 8.0 166 185-363 3-229 (486)
159 PRK11823 DNA repair protein Ra 98.1 1.5E-05 3.3E-10 85.0 11.8 99 163-276 67-167 (446)
160 PLN03187 meiotic recombination 98.1 9.4E-05 2E-09 76.2 16.8 123 94-230 42-180 (344)
161 cd01124 KaiC KaiC is a circadi 98.1 1.6E-05 3.4E-10 74.0 10.1 44 185-228 1-44 (187)
162 TIGR00176 mobB molybdopterin-g 98.1 8.4E-06 1.8E-10 74.6 7.3 37 185-221 1-37 (155)
163 PTZ00035 Rad51 protein; Provis 98.1 0.00015 3.2E-09 74.7 17.1 123 94-230 34-172 (337)
164 PF06745 KaiC: KaiC; InterPro 98.1 2.9E-05 6.2E-10 75.0 10.7 59 164-229 7-66 (226)
165 PRK04328 hypothetical protein; 98.1 3.9E-05 8.4E-10 75.6 11.7 54 163-223 10-63 (249)
166 COG0468 RecA RecA/RadA recombi 98.0 0.00011 2.3E-09 73.4 14.7 105 164-277 48-153 (279)
167 PRK12739 elongation factor G; 98.0 0.0001 2.2E-09 82.9 16.3 144 182-350 7-155 (691)
168 TIGR03600 phage_DnaB phage rep 98.0 0.0017 3.8E-08 68.8 24.7 117 182-305 193-313 (421)
169 PRK04296 thymidine kinase; Pro 98.0 1.2E-05 2.6E-10 75.9 7.5 88 183-278 2-91 (190)
170 cd01884 EF_Tu EF-Tu subfamily. 98.0 0.0001 2.2E-09 69.9 13.6 122 185-335 4-131 (195)
171 TIGR00416 sms DNA repair prote 98.0 1.9E-05 4.1E-10 84.4 9.4 99 163-276 81-181 (454)
172 PF00009 GTP_EFTU: Elongation 98.0 4.2E-05 9E-10 71.7 10.4 128 183-335 3-135 (188)
173 cd00881 GTP_translation_factor 98.0 4.2E-05 9E-10 70.5 10.3 125 186-336 2-128 (189)
174 cd01393 recA_like RecA is a b 98.0 4.6E-05 9.9E-10 73.3 10.8 56 163-225 6-68 (226)
175 TIGR03880 KaiC_arch_3 KaiC dom 98.0 7.4E-05 1.6E-09 72.1 12.1 52 164-222 4-55 (224)
176 PRK00007 elongation factor G; 98.0 0.00011 2.3E-09 82.9 14.9 141 183-350 10-157 (693)
177 COG0480 FusA Translation elong 98.0 7E-05 1.5E-09 83.5 13.2 143 182-353 9-161 (697)
178 PF13401 AAA_22: AAA domain; P 98.0 4.3E-05 9.3E-10 66.7 9.4 106 182-292 3-113 (131)
179 cd01122 GP4d_helicase GP4d_hel 97.9 0.00032 7E-09 69.5 16.2 118 182-305 29-148 (271)
180 PRK08760 replicative DNA helic 97.9 0.0028 6E-08 68.3 24.3 116 182-305 228-347 (476)
181 PRK10751 molybdopterin-guanine 97.9 2.9E-05 6.3E-10 72.2 7.8 38 182-219 5-42 (173)
182 cd00984 DnaB_C DnaB helicase C 97.9 0.00025 5.5E-09 68.9 14.8 41 182-222 12-53 (242)
183 PRK06696 uridine kinase; Valid 97.9 3.6E-05 7.8E-10 74.5 8.5 44 181-224 20-63 (223)
184 TIGR03881 KaiC_arch_4 KaiC dom 97.9 0.00023 4.9E-09 68.8 13.9 53 163-222 7-59 (229)
185 KOG1533 Predicted GTPase [Gene 97.9 1.8E-05 3.9E-10 75.9 6.0 38 186-223 5-42 (290)
186 PRK05439 pantothenate kinase; 97.9 5.9E-05 1.3E-09 76.5 10.0 42 181-222 84-127 (311)
187 cd01894 EngA1 EngA1 subfamily. 97.9 0.00023 5E-09 63.3 12.9 75 264-338 43-121 (157)
188 TIGR02475 CobW cobalamin biosy 97.9 0.00017 3.7E-09 74.4 13.4 120 184-306 5-134 (341)
189 PRK05973 replicative DNA helic 97.9 0.00011 2.4E-09 71.8 11.2 48 182-229 63-110 (237)
190 PRK04301 radA DNA repair and r 97.9 0.00019 4.2E-09 73.2 13.4 98 123-230 44-156 (317)
191 KOG0635 Adenosine 5'-phosphosu 97.9 7.2E-05 1.6E-09 67.2 8.8 46 181-226 29-74 (207)
192 TIGR00665 DnaB replicative DNA 97.9 0.008 1.7E-07 63.9 25.8 116 182-305 194-313 (434)
193 TIGR03574 selen_PSTK L-seryl-t 97.9 0.00011 2.5E-09 72.1 10.9 40 185-224 1-40 (249)
194 COG0523 Putative GTPases (G3E 97.8 0.00012 2.5E-09 74.8 11.2 148 185-339 3-162 (323)
195 TIGR02236 recomb_radA DNA repa 97.8 0.00025 5.4E-09 72.0 13.7 61 163-230 82-149 (310)
196 COG1160 Predicted GTPases [Gen 97.8 0.0003 6.5E-09 73.7 14.4 117 184-335 4-125 (444)
197 COG4963 CpaE Flp pilus assembl 97.8 0.0012 2.6E-08 67.8 18.3 161 182-352 103-300 (366)
198 TIGR00484 EF-G translation elo 97.8 0.00048 1E-08 77.6 16.9 143 182-350 9-157 (689)
199 PRK13351 elongation factor G; 97.8 0.0004 8.6E-09 78.2 16.3 145 183-352 8-157 (687)
200 PRK06526 transposase; Provisio 97.8 6.4E-05 1.4E-09 74.3 8.7 80 183-283 98-177 (254)
201 cd04165 GTPBP1_like GTPBP1-lik 97.8 5.7E-05 1.2E-09 73.3 8.1 140 186-335 2-151 (224)
202 PRK09165 replicative DNA helic 97.8 0.0045 9.8E-08 67.1 23.3 144 182-333 216-393 (497)
203 cd01852 AIG1 AIG1 (avrRpt2-ind 97.8 0.00029 6.3E-09 66.5 12.4 72 264-335 47-129 (196)
204 PRK08233 hypothetical protein; 97.8 6.8E-05 1.5E-09 69.3 7.7 38 182-221 2-39 (182)
205 cd01123 Rad51_DMC1_radA Rad51_ 97.8 0.00013 2.8E-09 70.7 9.9 51 164-221 7-63 (235)
206 PRK07667 uridine kinase; Provi 97.8 6.2E-05 1.3E-09 71.2 7.3 41 182-222 16-56 (193)
207 PRK05748 replicative DNA helic 97.8 0.0043 9.3E-08 66.4 22.1 117 182-305 202-322 (448)
208 PF06414 Zeta_toxin: Zeta toxi 97.8 9.9E-05 2.1E-09 70.1 8.5 89 181-277 13-104 (199)
209 PLN02974 adenosylmethionine-8- 97.8 0.001 2.2E-08 75.8 18.1 87 265-359 184-278 (817)
210 PRK14494 putative molybdopteri 97.8 3.8E-05 8.2E-10 74.6 5.7 35 184-218 2-36 (229)
211 COG0467 RAD55 RecA-superfamily 97.7 0.00029 6.3E-09 69.6 11.9 60 165-231 12-71 (260)
212 PRK05595 replicative DNA helic 97.7 0.0065 1.4E-07 64.9 23.0 116 182-305 200-319 (444)
213 cd01878 HflX HflX subfamily. 97.7 0.0004 8.6E-09 65.6 12.1 21 184-204 42-62 (204)
214 PRK00741 prfC peptide chain re 97.7 0.00021 4.5E-09 77.9 11.3 147 182-353 9-164 (526)
215 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 0.00021 4.6E-09 64.6 9.6 65 264-335 48-115 (168)
216 PRK07952 DNA replication prote 97.7 0.00026 5.7E-09 69.5 10.8 76 184-278 100-175 (244)
217 PF13481 AAA_25: AAA domain; P 97.7 0.00018 3.8E-09 67.4 9.2 41 183-223 32-82 (193)
218 cd03116 MobB Molybdenum is an 97.7 0.00016 3.4E-09 66.5 8.5 39 184-222 2-40 (159)
219 cd01891 TypA_BipA TypA (tyrosi 97.7 0.00077 1.7E-08 63.3 13.3 65 264-335 63-130 (194)
220 TIGR00503 prfC peptide chain r 97.7 0.00022 4.9E-09 77.6 10.9 148 182-351 10-163 (527)
221 PRK06762 hypothetical protein; 97.7 0.00015 3.3E-09 66.3 8.2 38 183-223 2-39 (166)
222 PRK15453 phosphoribulokinase; 97.7 0.00023 4.9E-09 71.0 9.8 43 182-224 4-46 (290)
223 PRK09302 circadian clock prote 97.7 0.00029 6.4E-09 76.5 11.6 52 163-221 260-311 (509)
224 cd02029 PRK_like Phosphoribulo 97.7 0.00017 3.6E-09 71.5 8.7 40 185-224 1-40 (277)
225 PRK12298 obgE GTPase CgtA; Rev 97.7 0.00028 6.1E-09 74.0 10.9 20 185-204 161-180 (390)
226 COG2074 2-phosphoglycerate kin 97.7 0.00017 3.7E-09 70.0 8.4 99 117-222 20-124 (299)
227 PRK09554 feoB ferrous iron tra 97.7 0.00031 6.6E-09 79.7 11.8 136 184-355 4-148 (772)
228 cd00880 Era_like Era (E. coli 97.7 9E-05 1.9E-09 65.1 6.0 71 265-337 44-119 (163)
229 cd01895 EngA2 EngA2 subfamily. 97.6 0.00075 1.6E-08 60.8 12.1 22 183-204 2-23 (174)
230 cd04167 Snu114p Snu114p subfam 97.6 0.00024 5.2E-09 68.0 9.2 23 185-207 2-24 (213)
231 PF01926 MMR_HSR1: 50S ribosom 97.6 0.00032 6.8E-09 60.2 8.9 67 264-331 45-116 (116)
232 PF00154 RecA: recA bacterial 97.6 0.00017 3.6E-09 73.4 8.2 100 163-278 39-144 (322)
233 COG4240 Predicted kinase [Gene 97.6 0.00048 1E-08 66.1 10.6 72 158-230 26-98 (300)
234 PRK09866 hypothetical protein; 97.6 0.0016 3.5E-08 71.3 15.8 69 265-335 229-302 (741)
235 TIGR03594 GTPase_EngA ribosome 97.6 0.00081 1.8E-08 71.2 13.6 114 186-337 2-122 (429)
236 cd01853 Toc34_like Toc34-like 97.6 0.00076 1.7E-08 66.5 12.3 23 182-204 30-52 (249)
237 TIGR02655 circ_KaiC circadian 97.6 0.0004 8.7E-09 75.0 11.1 101 163-274 8-129 (484)
238 PLN03186 DNA repair protein RA 97.6 0.002 4.3E-08 66.5 15.6 95 124-230 67-177 (342)
239 COG2874 FlaH Predicted ATPases 97.6 0.001 2.2E-08 63.4 12.3 109 162-277 14-135 (235)
240 cd04171 SelB SelB subfamily. 97.6 0.0011 2.4E-08 59.5 12.3 66 265-336 50-118 (164)
241 PRK00049 elongation factor Tu; 97.6 0.00063 1.4E-08 71.6 12.2 123 184-336 13-142 (396)
242 PF08433 KTI12: Chromatin asso 97.6 0.00039 8.5E-09 69.3 9.8 104 185-305 3-107 (270)
243 PRK03846 adenylylsulfate kinas 97.6 0.0001 2.3E-09 69.8 5.5 44 181-224 22-65 (198)
244 COG1084 Predicted GTPase [Gene 97.6 0.0014 3E-08 66.1 13.5 117 183-335 168-293 (346)
245 cd01879 FeoB Ferrous iron tran 97.6 0.00036 7.7E-09 62.4 8.7 91 265-355 42-137 (158)
246 PRK09302 circadian clock prote 97.6 0.00061 1.3E-08 74.0 12.0 61 163-230 18-79 (509)
247 PLN03127 Elongation factor Tu; 97.6 0.00097 2.1E-08 71.3 13.3 123 184-336 62-191 (447)
248 cd01898 Obg Obg subfamily. Th 97.6 0.00061 1.3E-08 61.8 10.3 19 186-204 3-21 (170)
249 PRK08727 hypothetical protein; 97.6 0.00078 1.7E-08 65.7 11.6 36 185-220 43-78 (233)
250 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.0012 2.6E-08 63.3 12.7 41 182-222 37-77 (226)
251 PRK09519 recA DNA recombinatio 97.5 0.00072 1.6E-08 76.1 12.6 98 163-276 46-149 (790)
252 TIGR00991 3a0901s02IAP34 GTP-b 97.5 0.00065 1.4E-08 68.8 11.0 134 163-335 22-166 (313)
253 cd01883 EF1_alpha Eukaryotic e 97.5 0.0003 6.6E-09 67.8 8.4 22 186-207 2-23 (219)
254 PRK08506 replicative DNA helic 97.5 0.017 3.8E-07 62.2 22.6 117 182-305 191-310 (472)
255 PRK05541 adenylylsulfate kinas 97.5 9.6E-05 2.1E-09 68.5 4.7 42 181-222 5-46 (176)
256 PRK12735 elongation factor Tu; 97.5 0.0017 3.6E-08 68.4 14.5 127 182-335 10-141 (396)
257 cd02028 UMPK_like Uridine mono 97.5 9.8E-05 2.1E-09 69.1 4.7 39 185-223 1-39 (179)
258 cd04164 trmE TrmE (MnmE, ThdF, 97.5 0.00092 2E-08 59.3 10.7 72 264-337 47-122 (157)
259 PRK06749 replicative DNA helic 97.5 0.014 3.1E-07 62.0 21.4 118 182-305 185-307 (428)
260 PRK00093 GTP-binding protein D 97.5 0.00088 1.9E-08 71.1 12.3 117 185-336 3-123 (435)
261 cd01125 repA Hexameric Replica 97.5 0.00056 1.2E-08 66.7 10.0 50 184-233 2-63 (239)
262 PF03796 DnaB_C: DnaB-like hel 97.5 0.0035 7.6E-08 61.9 15.7 101 164-276 8-112 (259)
263 PRK07773 replicative DNA helic 97.5 0.014 3.1E-07 67.6 22.8 41 182-222 216-257 (886)
264 PRK05480 uridine/cytidine kina 97.5 0.00017 3.8E-09 68.7 6.0 40 182-223 5-44 (209)
265 TIGR02239 recomb_RAD51 DNA rep 97.5 0.0036 7.7E-08 64.0 15.8 91 124-226 40-146 (316)
266 PRK05636 replicative DNA helic 97.5 0.02 4.3E-07 62.2 22.3 116 182-305 264-383 (505)
267 KOG2743 Cobalamin synthesis pr 97.5 0.0012 2.6E-08 65.6 11.7 140 184-337 58-226 (391)
268 PF03205 MobB: Molybdopterin g 97.5 0.00018 3.9E-09 64.7 5.5 37 185-221 2-39 (140)
269 cd01890 LepA LepA subfamily. 97.5 0.002 4.2E-08 59.1 12.6 81 264-351 65-150 (179)
270 PRK14495 putative molybdopteri 97.5 0.00016 3.6E-09 75.9 5.9 37 184-220 2-38 (452)
271 PRK14489 putative bifunctional 97.5 0.00026 5.7E-09 73.7 7.4 41 182-222 204-244 (366)
272 COG1072 CoaA Panthothenate kin 97.5 0.0019 4.1E-08 63.8 12.8 58 160-223 65-124 (283)
273 COG4088 Predicted nucleotide k 97.5 0.0026 5.6E-08 60.4 13.1 36 185-220 3-38 (261)
274 PF13245 AAA_19: Part of AAA d 97.5 0.00021 4.6E-09 57.4 5.1 45 183-230 10-58 (76)
275 cd04160 Arfrp1 Arfrp1 subfamil 97.5 0.00065 1.4E-08 61.5 9.0 66 264-336 48-121 (167)
276 TIGR01394 TypA_BipA GTP-bindin 97.5 0.00064 1.4E-08 75.1 10.5 120 184-335 2-129 (594)
277 cd01885 EF2 EF2 (for archaea a 97.4 0.00077 1.7E-08 65.3 9.8 64 264-334 71-137 (222)
278 cd02027 APSK Adenosine 5'-phos 97.4 0.00012 2.7E-09 66.3 4.0 40 185-224 1-40 (149)
279 KOG0462 Elongation factor-type 97.4 0.00053 1.1E-08 73.0 9.1 142 185-351 62-208 (650)
280 PRK08006 replicative DNA helic 97.4 0.035 7.5E-07 59.8 23.3 118 182-305 223-344 (471)
281 cd00009 AAA The AAA+ (ATPases 97.4 0.00069 1.5E-08 58.8 8.6 43 183-225 19-61 (151)
282 TIGR00490 aEF-2 translation el 97.4 0.00072 1.6E-08 76.5 10.9 66 263-335 83-151 (720)
283 PRK06893 DNA replication initi 97.4 0.00065 1.4E-08 66.1 9.1 37 184-220 40-76 (229)
284 cd01889 SelB_euk SelB subfamil 97.4 0.00084 1.8E-08 63.0 9.5 65 264-335 66-133 (192)
285 PF13207 AAA_17: AAA domain; P 97.4 0.0002 4.3E-09 61.8 4.8 32 185-221 1-32 (121)
286 PRK12736 elongation factor Tu; 97.4 0.0014 3.1E-08 68.8 12.2 126 183-335 12-141 (394)
287 PF08423 Rad51: Rad51; InterP 97.4 0.0011 2.3E-08 65.7 10.6 61 163-230 25-92 (256)
288 cd04166 CysN_ATPS CysN_ATPS su 97.4 0.00026 5.6E-09 67.6 6.0 67 264-336 75-144 (208)
289 KOG1534 Putative transcription 97.4 0.0016 3.4E-08 61.9 10.8 38 185-222 5-42 (273)
290 COG3598 RepA RecA-family ATPas 97.4 0.0015 3.3E-08 65.6 11.3 90 184-274 90-203 (402)
291 PRK06835 DNA replication prote 97.4 0.001 2.2E-08 68.3 10.3 90 184-292 184-273 (329)
292 PRK07004 replicative DNA helic 97.4 0.022 4.7E-07 61.2 20.8 117 182-305 212-332 (460)
293 CHL00071 tufA elongation facto 97.4 0.0014 3.1E-08 69.3 11.5 126 184-336 13-142 (409)
294 PRK15467 ethanolamine utilizat 97.4 0.002 4.4E-08 58.7 11.0 83 270-355 41-127 (158)
295 KOG1423 Ras-like GTPase ERA [C 97.4 0.00088 1.9E-08 66.9 9.0 124 183-343 72-206 (379)
296 PF00485 PRK: Phosphoribulokin 97.4 0.00021 4.5E-09 67.5 4.6 39 185-223 1-43 (194)
297 PRK00149 dnaA chromosomal repl 97.3 0.0049 1.1E-07 66.0 15.5 76 184-280 149-226 (450)
298 TIGR03594 GTPase_EngA ribosome 97.3 0.0074 1.6E-07 63.9 16.8 23 182-204 171-193 (429)
299 TIGR00455 apsK adenylylsulfate 97.3 0.00032 6.9E-09 65.6 5.5 44 181-224 16-59 (184)
300 PRK03003 GTP-binding protein D 97.3 0.0011 2.3E-08 71.5 10.3 116 184-336 39-160 (472)
301 PF10662 PduV-EutP: Ethanolami 97.3 0.00077 1.7E-08 60.7 7.7 77 269-350 39-120 (143)
302 PRK09270 nucleoside triphospha 97.3 0.00051 1.1E-08 66.7 7.1 43 181-223 31-74 (229)
303 PTZ00141 elongation factor 1- 97.3 0.001 2.2E-08 71.1 10.0 65 263-334 82-157 (446)
304 TIGR00485 EF-Tu translation el 97.3 0.0028 6E-08 66.7 13.0 125 184-336 13-142 (394)
305 cd01131 PilT Pilus retraction 97.3 0.0043 9.3E-08 58.9 13.2 33 185-217 3-36 (198)
306 TIGR00708 cobA cob(I)alamin ad 97.3 0.0035 7.6E-08 58.3 12.1 33 185-217 7-39 (173)
307 PRK14491 putative bifunctional 97.3 0.00039 8.5E-09 76.8 6.8 39 183-221 10-48 (597)
308 PF09439 SRPRB: Signal recogni 97.3 0.003 6.5E-08 59.2 11.7 86 183-308 3-88 (181)
309 COG1763 MobB Molybdopterin-gua 97.3 0.00033 7.1E-09 64.4 5.1 39 183-221 2-40 (161)
310 PLN00043 elongation factor 1-a 97.3 0.0011 2.5E-08 70.8 9.9 66 263-335 82-158 (447)
311 PRK08181 transposase; Validate 97.3 0.0011 2.4E-08 66.1 9.1 77 184-281 107-183 (269)
312 TIGR00362 DnaA chromosomal rep 97.3 0.0053 1.2E-07 64.7 14.9 75 184-279 137-213 (405)
313 cd00154 Rab Rab family. Rab G 97.3 0.0018 3.8E-08 57.2 9.6 86 264-355 47-142 (159)
314 PRK03003 GTP-binding protein D 97.3 0.0033 7.2E-08 67.7 13.4 120 182-336 210-336 (472)
315 smart00178 SAR Sar1p-like memb 97.3 0.0016 3.5E-08 60.7 9.7 66 264-335 59-131 (184)
316 smart00175 RAB Rab subfamily o 97.3 0.0017 3.7E-08 58.3 9.6 82 265-352 48-139 (164)
317 TIGR00450 mnmE_trmE_thdF tRNA 97.3 0.017 3.7E-07 61.7 18.5 88 264-355 249-341 (442)
318 PRK06904 replicative DNA helic 97.3 0.095 2.1E-06 56.5 24.3 118 182-305 220-342 (472)
319 PF13671 AAA_33: AAA domain; P 97.3 0.00027 5.7E-09 62.7 4.0 33 185-222 1-33 (143)
320 PF13479 AAA_24: AAA domain 97.3 0.00048 1E-08 66.2 6.1 77 182-277 2-80 (213)
321 TIGR00554 panK_bact pantothena 97.3 0.0021 4.6E-08 64.8 10.8 43 181-223 60-104 (290)
322 PF01695 IstB_IS21: IstB-like 97.3 0.0007 1.5E-08 63.3 6.9 76 183-279 47-122 (178)
323 PRK06321 replicative DNA helic 97.3 0.046 1E-06 58.9 21.7 116 182-305 225-344 (472)
324 cd02025 PanK Pantothenate kina 97.3 0.00035 7.6E-09 67.6 5.0 39 185-223 1-41 (220)
325 cd04139 RalA_RalB RalA/RalB su 97.2 0.0026 5.6E-08 57.0 10.4 83 265-354 47-141 (164)
326 PRK00093 GTP-binding protein D 97.2 0.0038 8.2E-08 66.3 13.2 23 182-204 172-194 (435)
327 PRK14088 dnaA chromosomal repl 97.2 0.009 1.9E-07 63.8 16.0 74 185-278 132-207 (440)
328 PF13604 AAA_30: AAA domain; P 97.2 0.0015 3.3E-08 62.0 9.1 114 183-306 18-131 (196)
329 PRK12377 putative replication 97.2 0.0014 3.1E-08 64.6 9.1 75 184-278 102-176 (248)
330 cd01882 BMS1 Bms1. Bms1 is an 97.2 0.0047 1E-07 59.9 12.7 26 181-206 37-62 (225)
331 TIGR03598 GTPase_YsxC ribosome 97.2 0.0051 1.1E-07 57.0 12.4 23 182-204 17-39 (179)
332 cd04124 RabL2 RabL2 subfamily. 97.2 0.0032 6.8E-08 57.1 10.7 83 264-353 47-136 (161)
333 cd01897 NOG NOG1 is a nucleola 97.2 0.0027 5.8E-08 57.5 10.1 20 185-204 2-21 (168)
334 PTZ00416 elongation factor 2; 97.2 0.0011 2.4E-08 76.1 9.2 64 265-335 91-157 (836)
335 cd04156 ARLTS1 ARLTS1 subfamil 97.2 0.0026 5.6E-08 57.1 9.9 65 265-335 43-114 (160)
336 PRK09183 transposase/IS protei 97.2 0.0033 7.1E-08 62.4 11.4 79 183-281 102-180 (259)
337 cd01888 eIF2_gamma eIF2-gamma 97.2 0.00078 1.7E-08 64.1 6.7 65 266-336 83-151 (203)
338 KOG1805 DNA replication helica 97.2 0.0012 2.5E-08 74.4 8.9 55 185-242 687-741 (1100)
339 cd02021 GntK Gluconate kinase 97.2 0.0022 4.9E-08 57.5 9.3 37 185-226 1-37 (150)
340 PRK12740 elongation factor G; 97.2 0.0016 3.5E-08 73.1 10.2 84 263-353 57-145 (668)
341 PRK05433 GTP-binding protein L 97.2 0.0021 4.6E-08 71.1 10.9 143 183-351 7-157 (600)
342 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.2 0.003 6.5E-08 57.2 10.2 82 265-353 50-142 (166)
343 cd02023 UMPK Uridine monophosp 97.2 0.00043 9.3E-09 65.4 4.7 37 185-223 1-37 (198)
344 TIGR03156 GTP_HflX GTP-binding 97.2 0.0036 7.8E-08 64.9 11.9 118 184-336 190-315 (351)
345 cd04154 Arl2 Arl2 subfamily. 97.2 0.0025 5.5E-08 58.4 9.7 21 184-204 15-35 (173)
346 cd02019 NK Nucleoside/nucleoti 97.2 0.00058 1.3E-08 53.5 4.6 33 185-219 1-33 (69)
347 PLN03126 Elongation factor Tu; 97.2 0.0025 5.4E-08 68.7 11.0 124 184-336 82-211 (478)
348 PRK05642 DNA replication initi 97.2 0.0015 3.3E-08 63.7 8.6 80 184-293 46-125 (234)
349 PRK11058 GTPase HflX; Provisio 97.2 0.0038 8.3E-08 66.3 12.2 117 185-336 199-323 (426)
350 TIGR00345 arsA arsenite-activa 97.2 0.014 3E-07 58.7 15.7 25 199-223 1-25 (284)
351 PRK08840 replicative DNA helic 97.2 0.13 2.8E-06 55.4 23.9 118 182-305 216-337 (464)
352 PF00004 AAA: ATPase family as 97.2 0.0011 2.3E-08 57.5 6.7 68 186-276 1-69 (132)
353 PF04548 AIG1: AIG1 family; I 97.2 0.00091 2E-08 64.2 6.8 72 264-335 47-129 (212)
354 COG4108 PrfC Peptide chain rel 97.2 0.0073 1.6E-07 63.1 13.6 154 183-361 12-178 (528)
355 COG2403 Predicted GTPase [Gene 97.2 0.0039 8.5E-08 63.7 11.3 146 182-349 126-297 (449)
356 COG1484 DnaC DNA replication p 97.2 0.0022 4.8E-08 63.4 9.6 79 182-280 104-182 (254)
357 PRK12422 chromosomal replicati 97.2 0.013 2.9E-07 62.6 16.1 86 185-291 143-228 (445)
358 PRK05291 trmE tRNA modificatio 97.1 0.0066 1.4E-07 65.0 13.9 115 184-336 216-335 (449)
359 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0082 1.8E-07 55.1 12.5 88 185-276 4-106 (159)
360 COG1160 Predicted GTPases [Gen 97.1 0.0084 1.8E-07 63.1 14.1 140 158-337 153-304 (444)
361 cd04161 Arl2l1_Arl13_like Arl2 97.1 0.0027 5.8E-08 58.2 9.4 67 264-336 41-114 (167)
362 PLN03118 Rab family protein; P 97.1 0.0027 5.9E-08 60.5 9.8 21 184-204 15-35 (211)
363 PRK14086 dnaA chromosomal repl 97.1 0.0083 1.8E-07 66.0 14.6 87 185-292 316-404 (617)
364 PRK07560 elongation factor EF- 97.1 0.0043 9.4E-08 70.4 12.9 65 264-335 85-152 (731)
365 PRK12317 elongation factor 1-a 97.1 0.0042 9.1E-08 65.9 12.1 65 264-336 82-153 (425)
366 cd01876 YihA_EngB The YihA (En 97.1 0.0037 8E-08 55.8 10.1 19 186-204 2-20 (170)
367 PRK08084 DNA replication initi 97.1 0.0022 4.7E-08 62.7 9.1 38 184-221 46-83 (235)
368 PHA02530 pseT polynucleotide k 97.1 0.0014 3.1E-08 65.8 8.1 37 183-223 2-38 (300)
369 PRK12297 obgE GTPase CgtA; Rev 97.1 0.0059 1.3E-07 64.7 12.9 90 265-356 205-308 (424)
370 TIGR02034 CysN sulfate adenyly 97.1 0.0031 6.8E-08 66.6 10.8 64 264-335 78-146 (406)
371 cd04137 RheB Rheb (Ras Homolog 97.1 0.0032 6.8E-08 57.9 9.6 20 185-204 3-22 (180)
372 PRK12296 obgE GTPase CgtA; Rev 97.1 0.0049 1.1E-07 66.5 12.3 21 184-204 160-180 (500)
373 cd04155 Arl3 Arl3 subfamily. 97.1 0.0071 1.5E-07 55.1 11.9 22 183-204 14-35 (173)
374 PRK13695 putative NTPase; Prov 97.1 0.028 6E-07 52.0 15.9 31 185-215 2-32 (174)
375 PLN00116 translation elongatio 97.1 0.0033 7E-08 72.4 11.7 62 265-335 97-163 (843)
376 PRK05537 bifunctional sulfate 97.1 0.0014 3E-08 72.1 8.3 43 181-223 390-433 (568)
377 cd04159 Arl10_like Arl10-like 97.1 0.003 6.5E-08 55.8 9.1 19 186-204 2-20 (159)
378 TIGR01393 lepA GTP-binding pro 97.1 0.0025 5.4E-08 70.5 10.2 146 183-351 3-153 (595)
379 PRK05124 cysN sulfate adenylyl 97.1 0.0022 4.9E-08 69.0 9.6 64 264-335 105-173 (474)
380 COG1217 TypA Predicted membran 97.1 0.0039 8.4E-08 65.5 10.8 148 184-363 6-173 (603)
381 KOG2749 mRNA cleavage and poly 97.1 0.0094 2E-07 60.7 13.2 42 182-224 103-144 (415)
382 PRK09518 bifunctional cytidyla 97.1 0.018 3.9E-07 65.3 17.0 117 184-337 276-398 (712)
383 cd00876 Ras Ras family. The R 97.1 0.0029 6.3E-08 56.3 8.7 82 265-352 46-138 (160)
384 cd00878 Arf_Arl Arf (ADP-ribos 97.1 0.0019 4.1E-08 57.9 7.5 67 265-337 42-115 (158)
385 PRK05800 cobU adenosylcobinami 97.1 0.0028 6E-08 58.9 8.7 84 185-276 3-87 (170)
386 COG0572 Udk Uridine kinase [Nu 97.1 0.00064 1.4E-08 65.3 4.5 39 182-222 7-45 (218)
387 cd04104 p47_IIGP_like p47 (47- 97.0 0.0046 9.9E-08 58.5 10.3 20 185-204 3-22 (197)
388 PLN03046 D-glycerate 3-kinase; 97.0 0.00091 2E-08 70.1 5.8 43 181-223 210-252 (460)
389 PRK08116 hypothetical protein; 97.0 0.032 7E-07 55.6 16.7 37 184-220 115-151 (268)
390 cd04145 M_R_Ras_like M-Ras/R-R 97.0 0.0096 2.1E-07 53.4 11.9 20 185-204 4-23 (164)
391 cd04110 Rab35 Rab35 subfamily. 97.0 0.0053 1.1E-07 58.0 10.6 21 184-204 7-27 (199)
392 COG2019 AdkA Archaeal adenylat 97.0 0.0015 3.3E-08 59.9 6.4 25 183-207 4-28 (189)
393 cd04162 Arl9_Arfrp2_like Arl9/ 97.0 0.0067 1.4E-07 55.4 10.9 66 264-336 42-113 (164)
394 COG0370 FeoB Fe2+ transport sy 97.0 0.003 6.6E-08 69.2 9.8 134 185-355 5-144 (653)
395 PLN02796 D-glycerate 3-kinase 97.0 0.0026 5.6E-08 65.3 8.8 42 182-223 99-140 (347)
396 PTZ00301 uridine kinase; Provi 97.0 0.0012 2.6E-08 63.4 6.1 41 183-223 3-45 (210)
397 cd01864 Rab19 Rab19 subfamily. 97.0 0.0018 4E-08 58.7 6.9 21 184-204 4-24 (165)
398 PRK10218 GTP-binding protein; 97.0 0.0045 9.7E-08 68.6 11.1 122 183-335 5-133 (607)
399 PRK09518 bifunctional cytidyla 97.0 0.008 1.7E-07 68.0 13.4 73 264-336 496-575 (712)
400 cd01881 Obg_like The Obg-like 97.0 0.0028 6E-08 57.6 8.0 17 188-204 1-17 (176)
401 cd01867 Rab8_Rab10_Rab13_like 97.0 0.0064 1.4E-07 55.3 10.4 83 265-353 51-143 (167)
402 cd01865 Rab3 Rab3 subfamily. 97.0 0.006 1.3E-07 55.4 10.2 83 265-353 49-141 (165)
403 PRK05506 bifunctional sulfate 97.0 0.0023 5E-08 71.4 8.8 64 264-335 102-170 (632)
404 KOG0464 Elongation factor G [T 97.0 0.00064 1.4E-08 70.0 3.9 144 184-351 38-185 (753)
405 TIGR01618 phage_P_loop phage n 97.0 0.0023 5.1E-08 61.8 7.7 81 182-277 11-93 (220)
406 smart00173 RAS Ras subfamily o 97.0 0.011 2.4E-07 53.1 11.8 19 186-204 3-21 (164)
407 cd04113 Rab4 Rab4 subfamily. 97.0 0.0048 1E-07 55.5 9.3 82 265-353 48-140 (161)
408 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.012 2.6E-07 54.6 12.1 34 185-223 1-35 (183)
409 PRK07003 DNA polymerase III su 97.0 0.036 7.7E-07 62.3 17.6 113 183-305 38-156 (830)
410 TIGR03575 selen_PSTK_euk L-ser 96.9 0.00091 2E-08 68.8 4.8 39 185-223 1-40 (340)
411 TIGR00235 udk uridine kinase. 96.9 0.001 2.2E-08 63.5 4.9 39 182-222 5-43 (207)
412 PF00308 Bac_DnaA: Bacterial d 96.9 0.0014 3E-08 63.3 5.8 87 185-292 36-124 (219)
413 cd04119 RJL RJL (RabJ-Like) su 96.9 0.006 1.3E-07 54.8 9.7 19 186-204 3-21 (168)
414 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.9 0.0048 1E-07 56.8 9.1 67 264-336 57-130 (174)
415 PRK05506 bifunctional sulfate 96.9 0.0028 6.1E-08 70.7 9.0 45 181-225 458-502 (632)
416 TIGR00437 feoB ferrous iron tr 96.9 0.003 6.6E-08 69.8 9.1 99 265-363 40-145 (591)
417 cd01868 Rab11_like Rab11-like. 96.9 0.0067 1.5E-07 54.7 9.9 20 185-204 5-24 (165)
418 PRK06921 hypothetical protein; 96.9 0.01 2.2E-07 59.2 11.9 37 183-219 117-154 (266)
419 cd00879 Sar1 Sar1 subfamily. 96.9 0.0055 1.2E-07 56.9 9.4 21 184-204 20-40 (190)
420 PRK04004 translation initiatio 96.9 0.0035 7.6E-08 69.2 9.3 23 182-204 5-27 (586)
421 PRK12299 obgE GTPase CgtA; Rev 96.9 0.011 2.4E-07 60.8 12.5 114 185-335 160-284 (335)
422 PRK08939 primosomal protein Dn 96.9 0.0045 9.7E-08 62.9 9.4 76 183-279 156-231 (306)
423 TIGR00041 DTMP_kinase thymidyl 96.9 0.0017 3.6E-08 61.0 5.8 37 183-219 3-39 (195)
424 cd04157 Arl6 Arl6 subfamily. 96.9 0.006 1.3E-07 54.6 9.3 66 264-336 43-118 (162)
425 TIGR03015 pepcterm_ATPase puta 96.9 0.0077 1.7E-07 59.3 10.7 101 183-291 43-147 (269)
426 KOG2004 Mitochondrial ATP-depe 96.9 0.0067 1.5E-07 66.7 10.8 34 182-215 437-470 (906)
427 cd01672 TMPK Thymidine monopho 96.9 0.0015 3.2E-08 61.0 5.2 35 185-219 2-36 (200)
428 cd04158 ARD1 ARD1 subfamily. 96.9 0.006 1.3E-07 55.8 9.2 67 264-336 41-114 (169)
429 cd01866 Rab2 Rab2 subfamily. 96.9 0.009 2E-07 54.4 10.3 20 185-204 6-25 (168)
430 COG0563 Adk Adenylate kinase a 96.9 0.0011 2.4E-08 62.1 4.1 37 185-226 2-39 (178)
431 cd04112 Rab26 Rab26 subfamily. 96.8 0.0053 1.1E-07 57.5 8.8 82 265-352 49-140 (191)
432 cd04105 SR_beta Signal recogni 96.8 0.004 8.7E-08 59.3 8.1 20 185-204 2-21 (203)
433 TIGR00231 small_GTP small GTP- 96.8 0.0052 1.1E-07 53.7 8.3 20 185-204 3-22 (161)
434 cd04101 RabL4 RabL4 (Rab-like4 96.8 0.0028 6.1E-08 57.1 6.7 65 264-335 50-120 (164)
435 TIGR02528 EutP ethanolamine ut 96.8 0.0053 1.1E-07 54.1 8.3 19 186-204 3-21 (142)
436 cd01861 Rab6 Rab6 subfamily. 96.8 0.0087 1.9E-07 53.6 9.9 81 266-352 49-139 (161)
437 PRK00411 cdc6 cell division co 96.8 0.054 1.2E-06 56.5 17.2 93 182-277 54-150 (394)
438 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0032 7E-08 60.6 7.4 92 180-278 26-121 (213)
439 cd04115 Rab33B_Rab33A Rab33B/R 96.8 0.0083 1.8E-07 54.8 9.8 82 265-352 50-143 (170)
440 PRK04213 GTP-binding protein; 96.8 0.02 4.3E-07 53.8 12.6 21 184-204 10-30 (201)
441 cd04151 Arl1 Arl1 subfamily. 96.8 0.0059 1.3E-07 54.9 8.7 67 264-336 41-114 (158)
442 PRK06851 hypothetical protein; 96.8 0.023 5E-07 59.0 14.0 43 183-226 214-256 (367)
443 PF00350 Dynamin_N: Dynamin fa 96.8 0.00056 1.2E-08 62.3 1.8 63 265-332 100-168 (168)
444 cd00544 CobU Adenosylcobinamid 96.8 0.0058 1.3E-07 56.7 8.6 83 185-276 1-84 (169)
445 cd01860 Rab5_related Rab5-rela 96.8 0.0092 2E-07 53.6 9.8 20 185-204 3-22 (163)
446 TIGR02729 Obg_CgtA Obg family 96.8 0.015 3.3E-07 59.7 12.4 20 185-204 159-178 (329)
447 cd04125 RabA_like RabA-like su 96.8 0.0085 1.9E-07 55.7 9.8 82 265-352 48-139 (188)
448 PLN02348 phosphoribulokinase 96.8 0.0021 4.7E-08 66.9 6.1 42 181-222 47-103 (395)
449 TIGR00993 3a0901s04IAP86 chlor 96.8 0.0041 8.9E-08 68.4 8.5 118 184-336 119-250 (763)
450 TIGR01448 recD_rel helicase, p 96.8 0.0064 1.4E-07 68.9 10.4 109 184-305 339-452 (720)
451 PRK04040 adenylate kinase; Pro 96.8 0.0016 3.5E-08 61.5 4.8 32 183-215 2-33 (188)
452 PRK00454 engB GTP-binding prot 96.8 0.01 2.3E-07 55.2 10.2 21 184-204 25-45 (196)
453 TIGR02639 ClpA ATP-dependent C 96.8 0.028 6.1E-07 63.9 15.4 81 184-278 485-566 (731)
454 PRK05306 infB translation init 96.8 0.006 1.3E-07 69.3 9.8 112 181-335 288-402 (787)
455 cd04122 Rab14 Rab14 subfamily. 96.7 0.012 2.6E-07 53.4 10.1 82 265-352 50-141 (166)
456 COG2805 PilT Tfp pilus assembl 96.7 0.0041 9E-08 62.2 7.4 40 182-221 124-163 (353)
457 TIGR00483 EF-1_alpha translati 96.7 0.0052 1.1E-07 65.3 8.7 24 183-206 7-30 (426)
458 TIGR01420 pilT_fam pilus retra 96.7 0.022 4.9E-07 58.8 13.2 35 183-217 122-157 (343)
459 cd04106 Rab23_lke Rab23-like s 96.7 0.008 1.7E-07 53.9 8.8 84 265-355 50-143 (162)
460 cd01863 Rab18 Rab18 subfamily. 96.7 0.014 3E-07 52.4 10.3 84 265-354 48-141 (161)
461 PRK06547 hypothetical protein; 96.7 0.0017 3.6E-08 60.5 4.4 38 181-223 13-50 (172)
462 PRK01184 hypothetical protein; 96.7 0.02 4.4E-07 53.2 11.7 34 184-223 2-36 (184)
463 cd01893 Miro1 Miro1 subfamily. 96.7 0.0064 1.4E-07 55.3 8.1 66 264-336 45-117 (166)
464 COG4555 NatA ABC-type Na+ tran 96.7 0.027 5.8E-07 53.6 12.1 49 177-225 22-71 (245)
465 KOG0924 mRNA splicing factor A 96.7 0.013 2.8E-07 64.0 11.3 122 183-308 371-511 (1042)
466 TIGR02928 orc1/cdc6 family rep 96.7 0.1 2.2E-06 53.8 17.9 106 182-290 39-155 (365)
467 PHA00729 NTP-binding motif con 96.7 0.0023 5.1E-08 62.0 5.2 25 184-208 18-42 (226)
468 CHL00189 infB translation init 96.7 0.0046 9.9E-08 69.7 8.2 24 181-204 242-265 (742)
469 PF09848 DUF2075: Uncharacteri 96.7 0.0077 1.7E-07 62.4 9.4 37 184-220 2-40 (352)
470 CHL00095 clpC Clp protease ATP 96.7 0.033 7.1E-07 64.1 15.4 39 184-222 540-578 (821)
471 cd04149 Arf6 Arf6 subfamily. 96.7 0.0089 1.9E-07 54.8 8.8 66 264-335 51-123 (168)
472 cd03113 CTGs CTP synthetase (C 96.7 0.11 2.5E-06 50.7 16.6 161 185-352 2-231 (255)
473 cd04142 RRP22 RRP22 subfamily. 96.7 0.0067 1.4E-07 57.5 8.1 19 186-204 3-21 (198)
474 cd04114 Rab30 Rab30 subfamily. 96.7 0.0062 1.3E-07 55.1 7.7 21 184-204 8-28 (169)
475 TIGR00475 selB selenocysteine- 96.7 0.017 3.6E-07 63.9 12.3 111 185-336 2-117 (581)
476 PRK14087 dnaA chromosomal repl 96.7 0.009 2E-07 64.0 9.9 91 185-294 143-235 (450)
477 cd04123 Rab21 Rab21 subfamily. 96.7 0.011 2.5E-07 52.5 9.2 83 265-353 48-140 (162)
478 TIGR02868 CydC thiol reductant 96.7 0.011 2.4E-07 64.4 10.9 28 182-209 360-387 (529)
479 cd03238 ABC_UvrA The excision 96.7 0.026 5.5E-07 52.8 11.8 106 178-289 16-130 (176)
480 COG0486 ThdF Predicted GTPase 96.7 0.072 1.6E-06 56.4 16.2 140 160-338 196-340 (454)
481 cd00157 Rho Rho (Ras homology) 96.7 0.0031 6.8E-08 57.0 5.6 65 264-335 46-117 (171)
482 PLN00223 ADP-ribosylation fact 96.7 0.017 3.6E-07 53.8 10.6 80 264-350 59-145 (181)
483 PRK05986 cob(I)alamin adenolsy 96.6 0.025 5.4E-07 53.5 11.5 120 184-305 23-155 (191)
484 TIGR00487 IF-2 translation ini 96.6 0.011 2.3E-07 65.4 10.4 23 182-204 86-108 (587)
485 PF07755 DUF1611: Protein of u 96.6 0.037 8E-07 55.9 13.4 157 183-352 112-289 (301)
486 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.023 4.9E-07 50.6 10.8 19 186-204 4-22 (162)
487 cd04109 Rab28 Rab28 subfamily. 96.6 0.01 2.2E-07 56.8 8.9 85 265-355 49-146 (215)
488 PRK06761 hypothetical protein; 96.6 0.0024 5.3E-08 64.0 4.7 42 183-224 3-45 (282)
489 cd04150 Arf1_5_like Arf1-Arf5- 96.6 0.013 2.8E-07 53.2 9.1 66 264-335 42-114 (159)
490 smart00177 ARF ARF-like small 96.6 0.015 3.3E-07 53.6 9.7 66 264-335 55-127 (175)
491 PF00931 NB-ARC: NB-ARC domain 96.6 0.018 3.8E-07 57.2 10.8 91 182-274 18-110 (287)
492 PRK12323 DNA polymerase III su 96.6 0.15 3.2E-06 56.7 18.6 120 182-306 37-162 (700)
493 PRK00131 aroK shikimate kinase 96.6 0.0022 4.7E-08 58.6 4.0 35 182-221 3-37 (175)
494 PRK14960 DNA polymerase III su 96.6 0.095 2.1E-06 58.3 17.1 111 183-303 37-153 (702)
495 PTZ00133 ADP-ribosylation fact 96.6 0.012 2.5E-07 54.9 8.9 67 264-336 59-132 (182)
496 PRK00652 lpxK tetraacyldisacch 96.6 0.0094 2E-07 61.1 8.9 36 185-220 51-88 (325)
497 PRK07764 DNA polymerase III su 96.6 0.068 1.5E-06 61.3 16.6 116 182-305 36-157 (824)
498 COG0050 TufB GTPases - transla 96.6 0.017 3.7E-07 57.6 10.1 132 180-337 8-143 (394)
499 cd01862 Rab7 Rab7 subfamily. 96.6 0.018 3.9E-07 52.1 9.9 19 186-204 3-21 (172)
500 TIGR03346 chaperone_ClpB ATP-d 96.6 0.025 5.5E-07 65.3 13.3 85 184-278 596-680 (852)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-85 Score=667.26 Aligned_cols=398 Identities=55% Similarity=0.869 Sum_probs=382.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
||++|+++|++++++++++..++|++|++.++||+.+|+++||+..+|++|++++++++.+++++.+++|.|+++++|++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
||+++||++..++.+..++|.||+++|.+|+||||++++||.||+++|++|++|+||+|||++++||+++++..++|+|.
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999998666777777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.+...+|.+++++++++++...||+|||||+|+++.|..++.|+..+..+++|++++||+|+++||+++++++.|++.++
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 98788999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHH
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~ 403 (481)
++|||+||+|+++++|.++++.+.+|.||+|+|+|++++||++|+|+|+++|+||+||+.+|+|++++..++++.++..+
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~ 320 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAE 320 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHhhhhccCCccccccCCCCCC-CccccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 404 k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~-~~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
++.+++|||+||++|++++.+|||++++++|+||++ ..........+..|+++++||+|||.+|+.+|.+|++||+||
T Consensus 321 kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~~SR~rR 399 (451)
T COG0541 321 KLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINASRKRR 399 (451)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCccccChHHHHH
Confidence 999999999999999999999999999999999986 222222334577899999999999999999999999999987
No 2
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=2.5e-72 Score=582.49 Aligned_cols=398 Identities=28% Similarity=0.517 Sum_probs=371.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
+|++|+++|.+++++++++..+++++|++++++|+.+|+++||+.+++++|++++++...+.++..+.+|.+++.+++++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
+|.+++++...++.+..++|++|+++|++||||||++++||.+|+++|++|++|++|+||+++++|++.+++..++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999997766676666778999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.....+|..+++++++.++..+||+|||||||+++.+..++.|+.++.....|++++||+|+++++++.++++.|+..++
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~ 240 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVD 240 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccC
Confidence 76677888888889988876789999999999999999999999999999999999999999999999999999998899
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHH
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~ 403 (481)
+.|+|+||+|+++++|.++++...+|+||.|+|+||+++|+++|+|+++++++||+||+.+|+|++++..++++..++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred hhhcccccHHHHHHHHhhhhccCCccccccCCCCCCC-ccccc-cchhhhcchhHHHHHHccChhhhcc--CCcc--ccc
Q 011624 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQ-VREAEKSLKIMEAMIEAMTPGIFFF--SIII--IGL 477 (481)
Q Consensus 404 k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~-~~~~~-~~d~a~~f~~~~~li~sm~~e~~~~--~~l~--~~~ 477 (481)
++.+++|||+||++|++++.+||+++++++|+||+++ +.... ....+..|+++++||+|||++||.+ |.+| ++|
T Consensus 321 k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~s 400 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPS 400 (429)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCcc
Confidence 9999999999999999999999999999999999763 32111 1234578999999999999999998 8999 889
Q ss_pred ccCC
Q 011624 478 TFKR 481 (481)
Q Consensus 478 ~~~~ 481 (481)
|++|
T Consensus 401 R~~R 404 (429)
T TIGR01425 401 RIQR 404 (429)
T ss_pred HHHH
Confidence 9876
No 3
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=2.2e-71 Score=578.75 Aligned_cols=395 Identities=55% Similarity=0.893 Sum_probs=371.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
||++|+++|+++++++.++..+++++|++++++|+.+|+++||+.+++++|++++++++.+.++..+++|.+++.+++++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999888888888999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
+|.+++++...++.+...+|.+|+++|++|+||||++++||.+|+++ |++|++|++|+|||++++|++.+++..|+|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987666666666679999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~ 322 (481)
......+|.++++++++.++..+||+|||||||+++.+..++.++..+...+.|++++||+|++++++++++++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~ 240 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL 240 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC
Confidence 87666789999988888777678999999999999999999999999999999999999999999999999999999889
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHH
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~ 402 (481)
++.|+|+||+|++.++|.++++...+++||.|+|+||+++||++|+|+++++++||+||+.+|+|++++..++++..++.
T Consensus 241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred HhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 403 ~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
+++.+++||++||++|++++.+||+++++++|+||++++.. ...+..|+++++||+|||++||.+|.+|++||++|
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~~~~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~~~sR~~R 396 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMKA---QLDDKELKRIEAIINSMTPKERANPDILNGSRKRR 396 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcccccc---cccHHHHHHHHHHHHcCCHHHHhCccccchHHHHH
Confidence 99999999999999999999999999999999999765432 22347889999999999999999999999999887
No 4
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-71 Score=552.20 Aligned_cols=397 Identities=37% Similarity=0.602 Sum_probs=378.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
++..|+.+|.++++++.....++++.++.+|++|+++|+++||++.+++++.+++++.+...+...+.++.+.+.+.+++
T Consensus 2 vla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~ 81 (483)
T KOG0780|consen 2 VLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFD 81 (483)
T ss_pred chHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
||+.+++++..++.+.+.+|.||+++|.+|+||||+|.+||+|++++|++|.||++|+||++++||++.++...++|+|.
T Consensus 82 eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 82 ELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred HHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.++..+|..++.+.+++++.++||+||+||.|+++.+..+++|+.++.+.+.|+.+++|+|+++||.+.++++.|+..++
T Consensus 162 syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 162 SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHH
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~ 403 (481)
+.+||+||+|+++++|.++++.+.++.||.|||+|++++|+++|+|++|++++||+||+.+|+|+++|+. .++..++.+
T Consensus 242 vg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~ 320 (483)
T KOG0780|consen 242 VGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVE 320 (483)
T ss_pred cceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 677788999
Q ss_pred hhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcchhHHHHHHccChhhhccCCcc--cccccCC
Q 011624 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIII--IGLTFKR 481 (481)
Q Consensus 404 k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~--~~~~~~~ 481 (481)
++..++||+.|||+|.+.+.+|||++++++|+||++.++.+..+....++++|.++|+|||.+|+.-|.++ +++|..|
T Consensus 321 kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~R 400 (483)
T KOG0780|consen 321 KLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMR 400 (483)
T ss_pred HHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcccCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhh
Confidence 99999999999999999999999999999999999977777766677888999999999999999888764 4455443
No 5
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=9.8e-70 Score=566.24 Aligned_cols=397 Identities=54% Similarity=0.866 Sum_probs=369.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHH
Q 011624 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (481)
Q Consensus 85 ~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (481)
|++|+++|+++++++.+++.++++++++++++|+.+|+++||+.+++++|++++++.+.+.++..+.++.+.+.++++++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
|.+++++...++.+...+|.+++++|++|+||||++++||.+|. ++|++|++|++|+|||++.+|+..++...|+|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999876555655556799999999999999999999999987 67999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.....+|.++..++++.+...+||+|||||||+++.|..++.++..+...+.|++++||+|+++++++.++++.|...++
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC
Confidence 77667888888888888766789999999999999999999999999999999999999999999999999999998899
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHH
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~ 403 (481)
+.|+|+||+|++.++|.++++...+++||.|+|+||+++|+++|+|+++++++||+||+.+|+|++++..++++..++.+
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred hhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCcccccc--chhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV--REAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 404 k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~--~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
++.+++||++||++|++++.+||+++++++|+||+++...... ...+..|+++++||+|||++|+.+|.++++||++|
T Consensus 321 ~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~~sR~~R 400 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400 (428)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccccccccccccccHHHHHHHHHHHHcCCHHHHhCcccccHHHHHH
Confidence 9999999999999999999999999999999999875422111 22456899999999999999999999999999887
No 6
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=6.1e-68 Score=554.05 Aligned_cols=391 Identities=41% Similarity=0.709 Sum_probs=360.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHH
Q 011624 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVK 167 (481)
Q Consensus 88 l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 167 (481)
|+++|.++++++.+++.+++++|++++++|+.+|+++||+++++++|++++++...+.++..+.++.+.+.++++++|.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred HhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC
Q 011624 168 LMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE 247 (481)
Q Consensus 168 ~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~ 247 (481)
++++...++... .+|.+++++|++|+||||++++||.+|+++|++|++|++|+|||++.+|+..+++..++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 998765444333 5789999999999999999999999999999999999999999999999999999999999876555
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEE
Q 011624 248 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327 (481)
Q Consensus 248 ~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~Gv 327 (481)
.++.+.++++++.+. ++|+|||||||+++.+..++.|+..+.....|+.++||+|+++++++.++++.|+..+++.|+
T Consensus 160 ~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 160 KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 678888888888863 569999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhc
Q 011624 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 407 (481)
Q Consensus 328 IlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~ 407 (481)
|+||+|+++++|.++++...+++||.|+|+||+++||++|+|+++++++||+||+.+|+|++++..++++..++.+++.+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~ 317 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccccHHHHHHHHhhhhccCCccccccCCCCCCC-ccccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 408 ~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~-~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
++||++||++|++++.+||+++++++|+||+++ +........+..|+++++||+|||++|+.+|.++++||++|
T Consensus 318 ~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~~sR~~R 392 (437)
T PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRR 392 (437)
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHhCcCccccchhhhhcccHHHHHHHHHHHHcCCHHHHhCcccccHHHHHH
Confidence 999999999999999999999999999999764 32211123456889999999999999999999999999887
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-48 Score=386.49 Aligned_cols=293 Identities=37% Similarity=0.627 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC------CCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-HhhccccCCCChh
Q 011624 82 AEMFGQLTSGLEAAWNKLKG------EETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQ-AVGVGLIRGVRPD 154 (481)
Q Consensus 82 ~~~~~~l~~~l~~~~~~~~~------~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~-~~~~~~~~~~~~~ 154 (481)
..+|+.+.++|.++.+.+.. .....++..++.++++++.|+++||+.+++.+|++.+++. .... .....
T Consensus 31 ~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~----~~~~~ 106 (340)
T COG0552 31 EGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKK----KIKDE 106 (340)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccc----cCCCH
Confidence 67778888887777666543 1223344567789999999999999999999999999985 3222 22346
Q ss_pred HHHHHHHHHHHHHHhcCccc----cccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH
Q 011624 155 QQLVKIVRDELVKLMGGEVS----ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 155 ~~~~~~l~~~L~~~l~~~~~----~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql 230 (481)
+.+.+.+.+.+.+++.+... ......++|.||+++|.+|+||||++++||++|.++|++|++..||+||.++++||
T Consensus 107 ~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL 186 (340)
T COG0552 107 ETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQL 186 (340)
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH
Confidence 77788888999999885322 11223457999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCC------ceEEEEEe
Q 011624 231 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP------TEVLLVVD 304 (481)
Q Consensus 231 ~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p------~~vvLVvd 304 (481)
..|++..|++++......+|+.++.+++++++.+++|+|||||+||++.+.++|.||.++.+++.+ +++++|+|
T Consensus 187 ~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 187 EVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred HHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 999999999999866789999999999999999999999999999999999999999999998864 55899999
Q ss_pred CcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 305 AMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 305 a~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
|++||+++++++.|++.++++|+|+||+|+++++|.++++.+.+++||.|+|.||.++||.+|+++.|++.+++
T Consensus 267 AttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 267 ATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred cccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887764
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.9e-44 Score=365.98 Aligned_cols=273 Identities=39% Similarity=0.660 Sum_probs=252.0
Q ss_pred CChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccc-----c
Q 011624 105 LTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVF-----A 179 (481)
Q Consensus 105 ~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-----~ 179 (481)
++++++++++++|+..|+++||+.+++++|++++++.+.+.++..+.++.+.+.+.+++++.++++... .+.. .
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~ 136 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKS 136 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhc
Confidence 889999999999999999999999999999999999998888777777788889999999999997543 1111 2
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
..+|.+++++|++|+||||++++||.+|.++|++|+++++|+||.++.+|++.|++..|++++......+|..++.++++
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999877777788888888888
Q ss_pred HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchh
Q 011624 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG 339 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g 339 (481)
.++..++|+|||||+|+++.+..++.+|.++.+...|+.++||+|+++++++.++++.|...+++.|+|+||+|++.++|
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG 296 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCcc
Confidence 87778899999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 340 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 340 ~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
.++++...+++||.|+|+||+++||++|+|+++++++||
T Consensus 297 ~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 297 AALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred HHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999987
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=6.8e-43 Score=353.44 Aligned_cols=291 Identities=37% Similarity=0.661 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCCh
Q 011624 81 RAEMFGQLTSGLEAAWNKL-------KGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRP 153 (481)
Q Consensus 81 ~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~ 153 (481)
.+.||++|.++|.++.+.+ .+...+++ +.+++|++.|+++||+++++++|++++++...... ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~ 84 (318)
T PRK10416 13 KEGWFERLKKGLSKTRENFGEGINGLFAKKKIDE----DLLEELEELLIEADVGVETTEEIIEELRERVKRKN----LKD 84 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCC
Confidence 5678888888877665444 33445554 36689999999999999999999999998875443 345
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHh
Q 011624 154 DQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233 (481)
Q Consensus 154 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~ 233 (481)
.+.+.+.+++++.++++....++.....+|.+++++|++|+||||++++||.+++.+|++|+++++|+||+++++|+..|
T Consensus 85 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~ 164 (318)
T PRK10416 85 PEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVW 164 (318)
T ss_pred HHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHH
Confidence 66788999999999997544444444456899999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc------CCceEEEEEeCcc
Q 011624 234 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMT 307 (481)
Q Consensus 234 ~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~------~p~~vvLVvda~~ 307 (481)
+...+++++......+|...+.+.+.....++||+|||||||+++.+..++.|+.++.+++ .|++++||+|+++
T Consensus 165 a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 165 GERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred HHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 9999999987766677877766777666668999999999999999999999999988754 4788999999999
Q ss_pred hHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCC
Q 011624 308 GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 308 ~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGl 379 (481)
+++...++..|...+++.|+|+||+|++.++|.++++...+++||.|+|+||+++||++|+|++++++++|.
T Consensus 245 g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 245 GQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 999988999998888999999999999999999999999999999999999999999999999999999874
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=2.9e-41 Score=335.10 Aligned_cols=265 Identities=42% Similarity=0.670 Sum_probs=235.0
Q ss_pred hhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEE
Q 011624 109 NIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILL 188 (481)
Q Consensus 109 ~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i 188 (481)
.+++.+++|+..|+++||+++++++|++++++...+.+.. ..+.+.+.+++.+.+.++....++.....+|+++++
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l 77 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILF 77 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEE
Confidence 3567899999999999999999999999999887655433 245678889999999887532333344556899999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcE
Q 011624 189 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 268 (481)
Q Consensus 189 ~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~ 268 (481)
+|++|+||||++++||.+++++|++|++|++|+||+++.+|+..|++..|++++......+|.....+.+..+..++||+
T Consensus 78 ~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ 157 (272)
T TIGR00064 78 VGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDV 157 (272)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999999998877667778877777777766678999
Q ss_pred EEEcCCCCccccHHHHHHHHhhhhccC------CceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHH
Q 011624 269 VIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 342 (481)
Q Consensus 269 VIIDt~G~~~~d~~~~~el~~i~~~~~------p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~ 342 (481)
|||||||+.+.|...+.||.++.+... |+.++||+|++++++...++..|...+++.|+|+||+|++.++|.++
T Consensus 158 ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l 237 (272)
T TIGR00064 158 VLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIIL 237 (272)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHH
Confidence 999999999999999999999998877 89999999999899888999999888899999999999999999999
Q ss_pred HHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhc
Q 011624 343 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 377 (481)
Q Consensus 343 ~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~l 377 (481)
++...+++||.|+++||+++|+++|+|+++++++|
T Consensus 238 ~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 238 SIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 99999999999999999999999999999988765
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=2e-38 Score=300.40 Aligned_cols=196 Identities=48% Similarity=0.722 Sum_probs=183.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
|+|++++|++||||||+++|||++++.+|++|.+|++|+||.++.+|++.|++..|+|++......+|.+.++++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999999889999999999999999999999999999999988777789999999999887
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHH
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 342 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~ 342 (481)
.+++|+|||||||+.+.+...+.++.++.....|++++||++++.+++....+..|...+++.++|+||+|++.+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 77899999999999999999999999999999999999999999998888888888888899999999999999999999
Q ss_pred HHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 343 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 343 ~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
++...+++||.|+++||+++|+++|+|+++++++||
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 12
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=8.7e-35 Score=296.01 Aligned_cols=258 Identities=21% Similarity=0.341 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEE
Q 011624 109 NIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILL 188 (481)
Q Consensus 109 ~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i 188 (481)
.....++.+++.|++.||++.+++++++.+........ ..+ ...+.+.+.+.+...+.... . ...+|++|++
T Consensus 175 ~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~---~~~-~~~~~~~l~~~l~~~l~~~~---~-~~~~~~vI~L 246 (436)
T PRK11889 175 SVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MIT-EEEVIEYILEDMRSHFNTEN---V-FEKEVQTIAL 246 (436)
T ss_pred ccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc---cCC-HHHHHHHHHHHHHHHhcccc---c-cccCCcEEEE
Confidence 34556788999999999999999999999876533221 112 34556667777776665421 1 1235789999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc-CCCc
Q 011624 189 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KNVD 267 (481)
Q Consensus 189 ~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~-~~~D 267 (481)
+|++||||||++++||..|..+|++|+++++|+||.++++|++.|++..|++++... ++.++ .+.+..+.. .++|
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~D 322 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVD 322 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999998643 45544 466766642 3699
Q ss_pred EEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-hHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHH
Q 011624 268 VVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 346 (481)
Q Consensus 268 ~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~ 346 (481)
+|||||+|+.+.+...+.++.++.....|+.++||+|+++ .++..++++.|+. +++.|+|+||+|++.++|.+++++.
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 9999999999989999999999998888999999999954 4677889999985 8999999999999999999999999
Q ss_pred HhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 347 VSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 347 ~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
.+++||.|+|+||++ +|++.++++.++.+++|-
T Consensus 402 ~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 402 VSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999999999 899999999999988874
No 13
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-36 Score=306.34 Aligned_cols=265 Identities=23% Similarity=0.313 Sum_probs=223.9
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc--hhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r--p~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+++.|+ +|+||||++..|+++|+++|++|. +|| |+|+|+. +|....|.+++|++.|+.+.+.+++.+.+.
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq-----pfKvGPDYIDP~-~H~~atG~~srNLD~~mm~~~~v~~~f~~~- 75 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ-----PFKVGPDYIDPG-YHTAATGRPSRNLDSWMMGEEGVRALFARA- 75 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc-----ccccCCCccCch-hhhHhhCCccCCCchhhcCHHHHHHHHHHh-
Confidence 455566 999999999999999999999999 999 9999997 899999999999999999999999999886
Q ss_pred cCCCcEEEEcCCCCcc------ccHHHHHHHHhhhhccCCceEEEEEeC-cchHHHHHHH---HHhhhcCCeeEEEEcCC
Q 011624 263 KKNVDVVIVDTAGRLQ------IDKAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALV---TTFNIEIGITGAILTKL 332 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~------~d~~~~~el~~i~~~~~p~~vvLVvda-~~~~~~~~~~---~~f~~~~~i~GvIlnKv 332 (481)
.++.|+.||++.-.+- .+..+++++++++. .+|+||+|+ ...+++++++ +.|+++++|.|||+|++
T Consensus 76 ~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~----~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrV 151 (451)
T COG1797 76 AADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG----APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRV 151 (451)
T ss_pred cCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC----CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 4889999997752221 15688999999988 899999999 6667787777 55688999999999999
Q ss_pred CCCCchhHHHHHHHH-hCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhccccc
Q 011624 333 DGDSRGGAALSVKEV-SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 411 (481)
Q Consensus 333 D~~~~~g~~~~~~~~-~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~d 411 (481)
.+.+|+..+..+++. +|+|| +|+.++.++++ +.+||||+ + ++.|..+.++..+.++.+++.++|
T Consensus 152 gserH~~llr~Ale~~~gv~v--lG~lpr~~~l~------lp~RHLGL------V-~a~E~~~~~~~~~~~a~~v~~~vD 216 (451)
T COG1797 152 GSERHYELLRDALEEYTGVPV--LGYLPRDDDLE------LPSRHLGL------V-PASERLELEAKLEALAEVVEKHVD 216 (451)
T ss_pred CCHHHHHHHHHHhhhcCCCcE--EEEecCCcccC------Cccccccc------c-cchhhhhHHHHHHHHHHHHHhhCC
Confidence 999999999887776 89999 99999999977 66779999 7 888888888888999999999999
Q ss_pred HHHHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcc---hhHHHHHHccChhhhccCCccccc
Q 011624 412 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSL---KIMEAMIEAMTPGIFFFSIIIIGL 477 (481)
Q Consensus 412 l~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f---~~~~~li~sm~~e~~~~~~l~~~~ 477 (481)
+|.+++.+....+..+.-......+.....+||+|+|+||+| +|++.| +.+|+|+++||||-|+.
T Consensus 217 ld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~L-r~~GAelv~FSPL~D~~ 284 (451)
T COG1797 217 LDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELL-REAGAELVFFSPLADEE 284 (451)
T ss_pred HHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhccccHHHHHHH-HHCCCEEEEeCCcCCCC
Confidence 999999998754322211111111121237899999999999 999999 99999999999998753
No 14
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=2.4e-34 Score=296.39 Aligned_cols=285 Identities=20% Similarity=0.290 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHhhCCCC-------CChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhcccc
Q 011624 81 RAEMFGQLTSGLEAAW-----NKLKGEET-------LTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLI 148 (481)
Q Consensus 81 ~~~~~~~l~~~l~~~~-----~~~~~~~~-------~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~ 148 (481)
...-++.|.+.+.+.+ +.+.+++. +++++....+.++++.|+++||+.+++++|++.+.+...+...+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~ 191 (432)
T PRK12724 112 ESFELEEVITEPERPVGLSFEKELFEKNSFLESETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG 191 (432)
T ss_pred cHHHHHHHHhhhhhhhhhhHHHHhhcccccccccccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc
Confidence 3344667777777655 56655554 48888899999999999999999999999999998776443322
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCcccccccc-CCCCEEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeccCCchhH
Q 011624 149 RGVRPDQQLVKIVRDELVKLMGGEVSELVFA-KSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 149 ~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~-~~~~~VI~i~G~~GvGKTTta~~LA~~L-~~~G~kVlLId~D~~rp~a 226 (481)
..+.+.+.+.+.|.+.+......+... ..++.+++++|++||||||++++||..+ ..+|++|.++++|+||+++
T Consensus 192 ----~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 192 ----RNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred ----chHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 123456677777777765322212211 1346899999999999999999999866 5789999999999999999
Q ss_pred HHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc---CCceEEEEE
Q 011624 227 IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL---NPTEVLLVV 303 (481)
Q Consensus 227 idql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~---~p~~vvLVv 303 (481)
.+|+..|++..|+|++... . +......+...++|+|||||||+.+.+...+.++.++.... .|.+++||+
T Consensus 268 ~eQLk~yAe~lgvp~~~~~---~----~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVL 340 (432)
T PRK12724 268 IEQLKRYADTMGMPFYPVK---D----IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVL 340 (432)
T ss_pred HHHHHHHHHhcCCCeeehH---H----HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 9999999999999886432 1 22333344346899999999999988889999999888765 356899999
Q ss_pred eCcchH-HHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhc
Q 011624 304 DAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRIL 377 (481)
Q Consensus 304 da~~~~-~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~l 377 (481)
|+++++ +..+.++.| ..+++.|+|+||+|++..+|.++++...+++||.|+++||++ +|++.++++.++..++
T Consensus 341 sAt~~~~~~~~~~~~f-~~~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 341 SSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred eCCCCHHHHHHHHHHh-cCCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 998887 445555666 579999999999999999999999999999999999999999 8999999998766544
No 15
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-35 Score=296.58 Aligned_cols=282 Identities=28% Similarity=0.473 Sum_probs=250.3
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcC
Q 011624 92 LEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG 171 (481)
Q Consensus 92 l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~ 171 (481)
....++.+.|.+.|+++++...|+.+++.|+...|..+.+++|++.+...+.|.++....+-.+.+.+.+++.|.++|.+
T Consensus 280 aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP 359 (587)
T KOG0781|consen 280 AFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTP 359 (587)
T ss_pred HHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 44667778899999999999999999999999999999999999999999999887655555777888999999999976
Q ss_pred ccc-cc------cccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhc------C
Q 011624 172 EVS-EL------VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV------G 238 (481)
Q Consensus 172 ~~~-~~------~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~------g 238 (481)
... ++ ....++|.+|.|+|.+||||||..+++|+||.+.+++|++..||+||.++++||++|.+.+ -
T Consensus 360 ~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~ 439 (587)
T KOG0781|consen 360 QRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTM 439 (587)
T ss_pred CchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccch
Confidence 432 11 1235689999999999999999999999999999999999999999999999999998876 5
Q ss_pred CCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHh
Q 011624 239 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTF 318 (481)
Q Consensus 239 v~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f 318 (481)
++++..+...+++.++++++++++..+||+|+|||+|+++.+..+|..|.++..+-.||-+++|-.|..|.+++++++.|
T Consensus 440 v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f 519 (587)
T KOG0781|consen 440 VELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF 519 (587)
T ss_pred hHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH
Confidence 78888888889999999999999989999999999999999999999999999999999999999998899999999888
Q ss_pred hhcC-------CeeEEEEcCCCC-CCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHh
Q 011624 319 NIEI-------GITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 373 (481)
Q Consensus 319 ~~~~-------~i~GvIlnKvD~-~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~ 373 (481)
+..+ .|.|+|+||+|- ....|.+.++.+.++.||.|+|+||...||.....+.++
T Consensus 520 n~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv 582 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVV 582 (587)
T ss_pred HHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHH
Confidence 6533 389999999995 566899999999999999999999999998765554443
No 16
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.4e-33 Score=291.48 Aligned_cols=255 Identities=23% Similarity=0.301 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcC
Q 011624 112 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGL 191 (481)
Q Consensus 112 ~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~ 191 (481)
..++++++.|+++||++.++++|++.+++....... ...+.+.+.+.+.+.+.+... .++ ....+|.+++++|+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~-~~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSI-IDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Ccc-ccCCCCeEEEEECC
Confidence 457889999999999999999999999877533221 223445556666666655321 112 12245789999999
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCc
Q 011624 192 QGVGKTTVSAKLANYLKK----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267 (481)
Q Consensus 192 ~GvGKTTta~~LA~~L~~----~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D 267 (481)
+|||||||+++||.++.. +|++|.+|++|+||+++.+|++.|++..|+|+.... .+.+ +...+..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~~~~-l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---SFKD-LKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---cHHH-HHHHHHHh--CCCC
Confidence 999999999999998873 589999999999999999999999999999987543 2222 34555554 6899
Q ss_pred EEEEcCCCCccccHHHHHHHHhhhhccC-CceEEEEEeCcchH-HHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHH
Q 011624 268 VVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 345 (481)
Q Consensus 268 ~VIIDt~G~~~~d~~~~~el~~i~~~~~-p~~vvLVvda~~~~-~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~ 345 (481)
+|||||+|+++.+...+.++.++..... +.+++||+|+++++ +..+.+..|. .+++.|+|+||+|++.++|.++++.
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 9999999999888777888888887665 45899999997775 4445556676 5789999999999999999999999
Q ss_pred HHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 346 EVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 346 ~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
..+++|+.|+++||++ +|+++|+|+.+++.++|+
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~ 370 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGY 370 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCC
Confidence 9999999999999999 899999999999999998
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1e-33 Score=287.53 Aligned_cols=255 Identities=23% Similarity=0.326 Sum_probs=211.9
Q ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCC
Q 011624 114 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (481)
Q Consensus 114 l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~G 193 (481)
.+++++.|.+.||+..++.+|++.+......... .+ .+.+...+.+.|...+.... .+ ...++++++++|++|
T Consensus 144 ~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~---~~-~~~v~~~~~~~L~~~l~~~~-~~--~~~~~~ii~lvGptG 216 (407)
T PRK12726 144 NSDFVKFLKGRGISDTYVADFMQAGRKQFKQVET---AH-LDDITDWFVPYLSGKLAVED-SF--DLSNHRIISLIGQTG 216 (407)
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---cc-HHHHHHHHHHHhcCcEeeCC-Cc--eecCCeEEEEECCCC
Confidence 4588999999999999999999998766322111 12 24455566666665554321 12 234678999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH-cCCCcEEEEc
Q 011624 194 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVD 272 (481)
Q Consensus 194 vGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~-~~~~D~VIID 272 (481)
|||||++++||.++.++|++|.+|++|+||+++.+||+.|++..++|++.. .+|.++ .+++..+. ..++|+||||
T Consensus 217 vGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 217 VGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEE
Confidence 999999999999998999999999999999999999999999999998754 355554 56677664 2579999999
Q ss_pred CCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-chHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCC
Q 011624 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (481)
Q Consensus 273 t~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glP 351 (481)
|||+.+.+...+.++..+.....|+.++||++++ ..++..+.++.|. .+++.|+|+||+|++.++|.++++...+|+|
T Consensus 293 TAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglP 371 (407)
T PRK12726 293 TVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 (407)
T ss_pred CCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCC
Confidence 9999999999999999999988899999999984 4467777777777 6899999999999999999999999999999
Q ss_pred eEEeecCCCC-CCCCCcChhhHhhhhcCCc
Q 011624 352 IKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 352 V~~ig~g~~v-~dl~~f~~~~~~~r~lGlg 380 (481)
|.|+++||++ +|+..++++.++.+++|.+
T Consensus 372 Isylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 372 VLYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 9999999999 6799999999999998863
No 18
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.2e-33 Score=309.50 Aligned_cols=251 Identities=26% Similarity=0.350 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCC
Q 011624 113 PMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQ 192 (481)
Q Consensus 113 ~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~ 192 (481)
...++++.|+++||+.+++++|++++.+. .++ ..+.+.+.++|.+.+... ....+.-.++.|++++|++
T Consensus 126 ~~~~l~~~Ll~~dv~~~la~~l~~~l~~~---------~~~-~~~~~~l~~~L~~~l~il-~~~~~~~~~g~Vi~lVGpn 194 (767)
T PRK14723 126 LRASLFRWLLGAGFSGQLARALLERLPVG---------YDR-PAAMAWIRNELATHLPVL-RDEDALLAQGGVLALVGPT 194 (767)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCH-HHHHHHHHHHHHHHhhhc-cCCCcccCCCeEEEEECCC
Confidence 34679999999999999999999998543 233 346778888888866421 1111111246899999999
Q ss_pred CCCHHHHHHHHHHHHH-HcC-CeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 011624 193 GVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVI 270 (481)
Q Consensus 193 GvGKTTta~~LA~~L~-~~G-~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VI 270 (481)
|||||||+++||..+. .+| ++|.++++|+||+++.+|++.|++..|++++... ++.+ +.+.++.+ .++|+||
T Consensus 195 GvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~--~~~D~VL 268 (767)
T PRK14723 195 GVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAAL--GDKHLVL 268 (767)
T ss_pred CCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHh--cCCCEEE
Confidence 9999999999999885 566 6999999999999999999999999999987543 4555 56777765 5789999
Q ss_pred EcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-HHHHHHHHhhhc--CCeeEEEEcCCCCCCchhHHHHHHHH
Q 011624 271 VDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEV 347 (481)
Q Consensus 271 IDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~~~~~~~f~~~--~~i~GvIlnKvD~~~~~g~~~~~~~~ 347 (481)
|||+|+++.+..++.++..+.....|++++||+|+++.. +..+.++.|... +++.|+|+||+|++.++|.++++...
T Consensus 269 IDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~ 348 (767)
T PRK14723 269 IDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR 348 (767)
T ss_pred EeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH
Confidence 999999999999999999988888899999999997664 455677888753 37999999999999999999999999
Q ss_pred hCCCeEEeecCCCC-CCCCCcChhhHhhhhcCCc
Q 011624 348 SGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 348 ~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGlg 380 (481)
+++||.|+++||++ +||++|+++.+++++++.+
T Consensus 349 ~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 349 HRLPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred HCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 99999999999999 9999999999999999963
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=8.5e-32 Score=282.45 Aligned_cols=254 Identities=29% Similarity=0.448 Sum_probs=210.8
Q ss_pred hhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEE
Q 011624 108 ENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVIL 187 (481)
Q Consensus 108 ~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~ 187 (481)
...+..+.++++.|+++||+..++++|++.+.+...... ..+.+.+.+.|.+.+......+ . .++.+++
T Consensus 157 ~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~L~~~l~~~~~~~-~--~~~~~i~ 225 (424)
T PRK05703 157 ERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRE--------RTAWRYLLELLANMIPVRVEDI-L--KQGGVVA 225 (424)
T ss_pred ccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhCcccccc-c--cCCcEEE
Confidence 456678899999999999999999999999977642211 0356778888888886543333 1 2356999
Q ss_pred EEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 188 LAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 188 i~G~~GvGKTTta~~LA~~L~--~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
++|++||||||++++||.++. +.|++|++|++|+||.++.+|+..|++..|+|+..... +.+ +...+..+ .+
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~~-l~~~l~~~--~~ 299 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PKE-LAKALEQL--RD 299 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HHh-HHHHHHHh--CC
Confidence 999999999999999999987 45899999999999999999999999999999876532 333 23445554 47
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhh-ccCCceEEEEEeCcchH-HHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHH
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALS 343 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~-~~~p~~vvLVvda~~~~-~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~ 343 (481)
+|+|||||||+.+.+...+.++..+.. ...+..++||++++.+. +..+.+..|. .+++.++|+||+|++..+|.+++
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~~ 378 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSILS 378 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHHH
Confidence 999999999999889889999988887 44578899999997664 5555567776 67889999999999999999999
Q ss_pred HHHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 344 VKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 344 ~~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
++..+++||.|+++||++ +||++|+++.+++++||.
T Consensus 379 ~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~ 415 (424)
T PRK05703 379 LLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGG 415 (424)
T ss_pred HHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhcc
Confidence 999999999999999998 899999999999999886
No 20
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.8e-31 Score=281.32 Aligned_cols=252 Identities=29% Similarity=0.365 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEc
Q 011624 111 VEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAG 190 (481)
Q Consensus 111 ~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G 190 (481)
+....++++.|+++||+..++++|++++++... . +.....+.+.+.+.+.... .......++.|++++|
T Consensus 195 ~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~---------~-~~~~~~l~~~l~~~l~~~~-~~~~~~~~g~Vi~LvG 263 (484)
T PRK06995 195 DPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDD---------A-EAALDWVQSALAKNLPVLD-SEDALLDRGGVFALMG 263 (484)
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhc---------h-hHHHHHHHHHHHHHHhhcc-CccccccCCcEEEEEC
Confidence 345688999999999999999999999976532 1 1234455555555443211 1111123468999999
Q ss_pred CCCCCHHHHHHHHHHHHH-HcC-CeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcE
Q 011624 191 LQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 268 (481)
Q Consensus 191 ~~GvGKTTta~~LA~~L~-~~G-~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~ 268 (481)
++|||||||+++||.++. ++| ++|.+|++|+||.++.+|+++|++..|+++...... .+... .+.. ..++|+
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~---~Dl~~-aL~~--L~d~d~ 337 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA---ADLRL-ALSE--LRNKHI 337 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc---hhHHH-HHHh--ccCCCe
Confidence 999999999999999885 556 599999999999999999999999999988754432 22222 2333 357899
Q ss_pred EEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH-HHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHH
Q 011624 269 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 347 (481)
Q Consensus 269 VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~-~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~ 347 (481)
++|||+|+.+.+..+..++..+.....|...+||+|++++...+ +.++.|. ..++.|+|+||+|++.++|.++++...
T Consensus 338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~~~~g~IlTKlDet~~~G~~l~i~~~ 416 (484)
T PRK06995 338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDVVIR 416 (484)
T ss_pred EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cCCCCEEEEeCCCCcccchHHHHHHHH
Confidence 99999999988776666666665555578899999997765544 4556665 588999999999999999999999999
Q ss_pred hCCCeEEeecCCCC-CCCCCcChhhHhhhhcCCc
Q 011624 348 SGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 348 ~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGlg 380 (481)
+++||.|+|+||++ +||++|+++.|++++++.+
T Consensus 417 ~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 417 YKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred HCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 99999999999999 9999999999999999873
No 21
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=2.8e-31 Score=262.34 Aligned_cols=259 Identities=22% Similarity=0.354 Sum_probs=209.3
Q ss_pred hhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEE
Q 011624 107 KENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVI 186 (481)
Q Consensus 107 ~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI 186 (481)
.+.+++.++++++.|+++||+.+++.++.+.......... . ....+.+.+.+.+...+.+.. + + ..++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~----~-~~~~vl~~v~~~l~~~~~~~~--~-~-~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT----M-ITEEVIEYILEDMSSHFNTEN--V-F-EKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC----c-cccHHHHHHhcccEEeeCCcc--c-c-cCCCCEE
Confidence 3567788899999999999999999999986532221110 0 112222333333333222211 1 1 2245799
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc-CC
Q 011624 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KN 265 (481)
Q Consensus 187 ~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~-~~ 265 (481)
+++|++|+||||++..|+..+..+|.+|.++++|+||.++.+|++.+++..+++++... ++.++ .+.+..+.. .+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~l-~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHHH-HHHHHHHHhcCC
Confidence 99999999999999999999988899999999999999999999999999999887542 34443 456666532 47
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-chHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHH
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~ 344 (481)
+|+|||||||+.+.+...+.++.++.....|+.++||++++ .++++.++++.|+. +++.|+|+||+|++.++|.++++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~ 233 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHH
Confidence 99999999999998999999999999988999999999995 56788899999985 99999999999999999999999
Q ss_pred HHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 345 KEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 345 ~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
...+++||.|+++||++ +|++.+++++++.+++|-
T Consensus 234 ~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 234 PAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999 799999999999988874
No 22
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=3.8e-31 Score=269.30 Aligned_cols=212 Identities=35% Similarity=0.530 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccCCchhHHHHHHHhhhh
Q 011624 159 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQ 236 (481)
Q Consensus 159 ~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~--~~G~kVlLId~D~~rp~aidql~~~~~~ 236 (481)
....+.+..+++.....+. ..+++|++++||+|||||||.++||+.+. ...++|.+|+.|+||.++.+|+++|++.
T Consensus 181 ~~~~~~l~~~~~~~~~~~~--~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~i 258 (407)
T COG1419 181 RYFSEKLRKLLLSLIENLI--VEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADI 258 (407)
T ss_pred hhHHHHHHHHHHhhccccc--cccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHH
Confidence 3444444444443332221 12478999999999999999999999888 4558999999999999999999999999
Q ss_pred cCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-HHHHHHH
Q 011624 237 VGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV 315 (481)
Q Consensus 237 ~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~~~~~ 315 (481)
+|+|+.... +|.+. .+++..+ .++|+|+|||+|+.+.|...+++|..+.....+..++||+++++. .+..+++
T Consensus 259 m~vp~~vv~---~~~el-~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 259 MGVPLEVVY---SPKEL-AEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred hCCceEEec---CHHHH-HHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 999998764 34443 3556665 588999999999999999999999999999988999999999655 6777888
Q ss_pred HHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 316 TTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 316 ~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
..|. .+++.|+|+||+|++...|.+.++..++++||.|+++||+| +|+..+.+..++++.+|.
T Consensus 333 ~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 333 KQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred HHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 9997 58999999999999999999999999999999999999999 899999999999999997
No 23
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=1.2e-29 Score=260.19 Aligned_cols=251 Identities=26% Similarity=0.316 Sum_probs=196.8
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 115 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 115 ~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
..+++.|+++||+..++++|++.+..... ..+. +.....+.+.+...+..- ......-.++.+++++|++||
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~------~~~~-~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~ii~lvGptGv 148 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEG------YDTL-DAAADWAQSVLAANLPVL-DSEDALMERGGVFALMGPTGV 148 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhcc------cCCH-HHHHHHHHHHHHhcchhh-cCCCccccCCcEEEEECCCCC
Confidence 56889999999999999999998865311 0111 222333444443333211 011111234579999999999
Q ss_pred CHHHHHHHHHHHHH-HcC-CeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEc
Q 011624 195 GKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 272 (481)
Q Consensus 195 GKTTta~~LA~~L~-~~G-~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIID 272 (481)
||||++++||..+. +.| .+|.+|++|+||+++.+|++.|++..|+++.......+. ...+.++ .++|+||||
T Consensus 149 GKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l----~~~l~~l--~~~DlVLID 222 (374)
T PRK14722 149 GKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL----QLALAEL--RNKHMVLID 222 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH----HHHHHHh--cCCCEEEEc
Confidence 99999999998876 457 699999999999999999999999999999866544333 2344444 578999999
Q ss_pred CCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH-HHHHHHhhhcC--------CeeEEEEcCCCCCCchhHHHH
Q 011624 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEI--------GITGAILTKLDGDSRGGAALS 343 (481)
Q Consensus 273 t~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~-~~~~~~f~~~~--------~i~GvIlnKvD~~~~~g~~~~ 343 (481)
|+|+.+.+..+..++..+.....+..++||++++++.+. .+.++.|.... ++.|+|+||+|++.++|.+++
T Consensus 223 TaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~ 302 (374)
T PRK14722 223 TIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 302 (374)
T ss_pred CCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHH
Confidence 999998888888998888776677899999999777554 45668886542 589999999999999999999
Q ss_pred HHHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 344 VKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 344 ~~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
+...+++||.|+++||++ +||+.+.++.++++.++.
T Consensus 303 ~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~ 339 (374)
T PRK14722 303 TVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCA 339 (374)
T ss_pred HHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhcc
Confidence 999999999999999999 889999999999888875
No 24
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=7.2e-29 Score=258.02 Aligned_cols=247 Identities=25% Similarity=0.368 Sum_probs=197.3
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 115 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 115 ~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
..+++.|+++||+..++++|++.+....... ...+.+.+.+.+.|... ... ++ ..++.+++++|++|+
T Consensus 135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~------~~~~~~~~~l~~~l~~~-~~~--~~---~~~g~vi~lvGpnG~ 202 (420)
T PRK14721 135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDFE------QSLKKTISLLTLNLRTI-GGD--EI---IEQGGVYALIGPTGV 202 (420)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhc-CCc--cc---cCCCcEEEEECCCCC
Confidence 6688999999999999999999987653211 11122333333333321 111 11 124679999999999
Q ss_pred CHHHHHHHHHHHHH-Hc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEc
Q 011624 195 GKTTVSAKLANYLK-KQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 272 (481)
Q Consensus 195 GKTTta~~LA~~L~-~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIID 272 (481)
||||++++||..+. .. +.+|.++.+|+||.++.+|+..+++..|+++..... +.+. ...+..+ .++|+|+||
T Consensus 203 GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~dl-~~al~~l--~~~d~VLID 276 (420)
T PRK14721 203 GKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IADL-QLMLHEL--RGKHMVLID 276 (420)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHHH-HHHHHHh--cCCCEEEec
Confidence 99999999998654 33 479999999999999999999999999999986543 3333 2444444 689999999
Q ss_pred CCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-HHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCC
Q 011624 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (481)
Q Consensus 273 t~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glP 351 (481)
|+|+.+.+..++.++..+.....+..++||++++++ ++..+.+..|. .+++.|+|+||+|++.++|.+++++..+++|
T Consensus 277 TaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lP 355 (420)
T PRK14721 277 TVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASLGIALDAVIRRKLV 355 (420)
T ss_pred CCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHHhCCC
Confidence 999998888899999988776678899999999765 45555666776 5899999999999999999999999999999
Q ss_pred eEEeecCCCC-CCCCCcChhhHhhhhcCCc
Q 011624 352 IKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 352 V~~ig~g~~v-~dl~~f~~~~~~~r~lGlg 380 (481)
+.|+++||++ +|+++++++.+++++++.+
T Consensus 356 i~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 356 LHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred EEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 9999999999 8999999999999999863
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=4.2e-27 Score=248.03 Aligned_cols=244 Identities=27% Similarity=0.305 Sum_probs=193.0
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 115 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 115 ~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
..+.+.|++.||+..++++|++++.... .. ......+.+.|.+.+.... ..+- .++.+++|+|++|+
T Consensus 295 ~~l~~~L~~~Gvs~~la~~L~~~l~~~~---------~~-~~~~~~l~~~L~~~l~v~~--~~~l-~~G~vIaLVGPtGv 361 (559)
T PRK12727 295 AQALELMDDYGFDAGLTRDVAMQIPADT---------EL-HRGRGLMLGLLSKRLPVAP--VDPL-ERGGVIALVGPTGA 361 (559)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhccc---------ch-hhHHHHHHHHHHHhcCcCc--cccc-cCCCEEEEECCCCC
Confidence 4467899999999999999999886542 11 2223456666666553221 2211 23579999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEc
Q 011624 195 GKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 272 (481)
Q Consensus 195 GKTTta~~LA~~L~~~--G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIID 272 (481)
||||++.+||..+..+ |++|.++++|+||.++.+|+..+++..|+++.... + ...+...+..+ .++|+||||
T Consensus 362 GKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~---d-~~~L~~aL~~l--~~~DLVLID 435 (559)
T PRK12727 362 GKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD---S-AESLLDLLERL--RDYKLVLID 435 (559)
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC---c-HHHHHHHHHHh--ccCCEEEec
Confidence 9999999999988765 58999999999999999999999999998887543 2 22344556554 579999999
Q ss_pred CCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-HHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCC
Q 011624 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (481)
Q Consensus 273 t~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glP 351 (481)
|+|+.+.+...+.++..+.... ....+||+++..+ .+..+.++.|.. .++.|+|+||+|++.++|.++++...+++|
T Consensus 436 TaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~~LP 513 (559)
T PRK12727 436 TAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDHQMP 513 (559)
T ss_pred CCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHhCCC
Confidence 9999888888787776654432 4677999999554 666777788874 688999999999999999999999999999
Q ss_pred eEEeecCCCC-CCCCCcChhhHhhhhcCC
Q 011624 352 IKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 352 V~~ig~g~~v-~dl~~f~~~~~~~r~lGl 379 (481)
|.|+++||++ +||+.+++..++++...+
T Consensus 514 I~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l 542 (559)
T PRK12727 514 ITWVTDGQRVPDDLHRANAASLVLRLEDL 542 (559)
T ss_pred EEEEeCCCCchhhhhcCCHHHHHHHHHHH
Confidence 9999999999 899999999988876655
No 26
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.94 E-value=1.2e-25 Score=235.37 Aligned_cols=252 Identities=21% Similarity=0.238 Sum_probs=189.0
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc--hhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r--p~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
++++|. +|+||||+++.|+.+|.++|.+|. +|+ |+++|+. .|....|.++.+++.++...+.+++.+..
T Consensus 4 ~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~-----~~K~Gpd~iD~~-~~~~~~g~~~~nld~~~~~~~~i~~~~~~-- 75 (433)
T PRK13896 4 FVLGGTSSGVGKTVATLATIRALEDAGYAVQ-----PAKAGPDFIDPS-HHEAVAGRPSRTLDPWLSGEDGMRRNYYR-- 75 (433)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE-----EEeeCCCCCCHH-HHHHHhCCCcccCChhhCCHHHHHHHHHh--
Confidence 455555 999999999999999999999998 777 6677775 77888999999988887777766665543
Q ss_pred cCCCcEEEEcCCCCcccc-HHHHHHHHhhhhccCCceEEEEEeCcch-HHHHHHH---HHhhh----cCCeeEEEEcCCC
Q 011624 263 KKNVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV---TTFNI----EIGITGAILTKLD 333 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d-~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~~~~~---~~f~~----~~~i~GvIlnKvD 333 (481)
..+|++||+++|.+-.. ..++.++++.+. .+++||+|+..+ .+....+ ..|.. ++++.|||+|++.
T Consensus 76 -~~~d~~vIEG~gGl~dg~~~s~adla~~l~----~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~ 150 (433)
T PRK13896 76 -GEGDICVVEGVMGLYDGDVSSTAMVAEALD----LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAH 150 (433)
T ss_pred -hcCCEEEEECCCccccCCCCCHHHHHHHHC----CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 34899999999877543 256788877776 789999999544 4444444 34544 6899999999999
Q ss_pred CCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccHH
Q 011624 334 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 413 (481)
Q Consensus 334 ~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~ 413 (481)
+..|...+....+. ++|+ +|..|+.+++. +.+||||+ + ++.|..+.++ .+.+ ++.++|+|
T Consensus 151 ~~~h~~~l~~~~~~-~i~v--lG~lP~~~~~~------~~~RHLGL------v-~~~e~~~~~~---~~~~-~~~~~d~~ 210 (433)
T PRK13896 151 GGRHADGIRDALPD-ELTY--FGRIPPRDDLE------IPDRHLGL------H-MGSEAPLDDD---ALDE-AAEHIDAE 210 (433)
T ss_pred cHHHHHHHHHhhhh-cCce--eEecccCCCCC------CCCCCcCC------C-cchhhccHHH---HHHH-HHHhCCHH
Confidence 88887766655555 7999 99999999876 56669999 5 5555433332 3333 67899999
Q ss_pred HHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcc---hhHHHHHHccChhhhccCCcccc
Q 011624 414 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSL---KIMEAMIEAMTPGIFFFSIIIIG 476 (481)
Q Consensus 414 ~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f---~~~~~li~sm~~e~~~~~~l~~~ 476 (481)
.+++..+.. ++. ..... .+...+++||+|+|+|||| +|++.| +++ +|+++||||.+.
T Consensus 211 ~l~~~a~~~-~~~-~~~~~--~~~~~~~~iavA~D~AF~FyY~enl~~L-~~~-aelv~fSPl~~~ 270 (433)
T PRK13896 211 RLAAVAREP-PRP-EPPEE--APATGDPTVAVARDAAFCFRYPATIERL-RER-ADVVTFSPVAGD 270 (433)
T ss_pred HHHHHhhCC-CCc-ccccc--ccCCCCCeEEEEEcCccceeCHHHHHHH-Hhc-CcEEEEcCCCCC
Confidence 999987432 211 00110 0122347899999999999 999999 999 999999999765
No 27
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.93 E-value=5.4e-25 Score=204.09 Aligned_cols=172 Identities=67% Similarity=1.027 Sum_probs=152.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
+++++|++|+||||++.+++..++++|++|+++++|++|+...+++..+.+..+++++......++.+.+.+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999998888888999887766667777777777766567
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~ 344 (481)
++|+|||||||..+.+...+.++..+.....++.+++|+++.++++..+.+..|....++.|+|+||+|...+.|.++++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 89999999999987777888888888777778999999999877777888888876778999999999999999999999
Q ss_pred HHHhCCCeEEee
Q 011624 345 KEVSGKPIKLVG 356 (481)
Q Consensus 345 ~~~~glPV~~ig 356 (481)
+..+++|+.|+|
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999998876
No 28
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.90 E-value=1.1e-22 Score=215.67 Aligned_cols=264 Identities=19% Similarity=0.272 Sum_probs=187.6
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh--HHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~--aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
++++|. +||||||+++.|+++|+++|++|. +|+|+ ++|.. .+....|.+..+.+.+....+.+++.+.++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~-----~fK~g~d~~D~~-~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~- 74 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQ-----PFKVGPDYIDPM-FHTQATGRPSRNLDSFFMSEAQIQECFHRH- 74 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcee-----EEccCCCCCCHH-HHHHHhCCchhhCCcccCCHHHHHHHHHHh-
Confidence 455555 999999999999999999999999 77754 44543 455566777666665555566677777776
Q ss_pred cCCCcEEEEcCCCCccc------cHHHHHHHHhhhhccCCceEEEEEeCcc-hHHHHHHH---HHhhhcCCeeEEEEcCC
Q 011624 263 KKNVDVVIVDTAGRLQI------DKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKL 332 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~------d~~~~~el~~i~~~~~p~~vvLVvda~~-~~~~~~~~---~~f~~~~~i~GvIlnKv 332 (481)
..++|++||+++|.+.. +..+..++++.+. .++++|+++.+ ...+.++. ..+...+.+.|+|+|++
T Consensus 75 ~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~----~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v 150 (449)
T TIGR00379 75 SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD----APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRV 150 (449)
T ss_pred cccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC----CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECC
Confidence 36899999999965531 2346777777666 78999999854 33444433 34556788999999999
Q ss_pred CCCCchhHHHHH-HHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhccccc
Q 011624 333 DGDSRGGAALSV-KEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 411 (481)
Q Consensus 333 D~~~~~g~~~~~-~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~d 411 (481)
+...+....... ...+++|+ +|..|+.+++. +.+||||+ + ++.|..+.++..+.+.+.++.++|
T Consensus 151 ~~~~~~~~~~~~i~~~~gipv--LG~IP~~~~l~------~p~rhLgL------v-~~~e~~~~~~~~~~~~~~~~~~~d 215 (449)
T TIGR00379 151 GSERHLEKLKIAVEPLRGIPI--LGVIPRQQDLK------VPDRHLGL------V-PAGEREIIQQIFDWLAEVVEKYLD 215 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCCE--EEEecCccccC------CCCcccCC------C-ChhhhhhHHHHHHHHHHHHHhhCC
Confidence 876555444333 34479998 89998888765 44569999 5 555654555555677788889999
Q ss_pred HHHHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcc---hhHHHHHHccChhhhccCCcccc
Q 011624 412 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSL---KIMEAMIEAMTPGIFFFSIIIIG 476 (481)
Q Consensus 412 l~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f---~~~~~li~sm~~e~~~~~~l~~~ 476 (481)
++.+++.+.+..+...........+...++++|+++|++||| +|++.| +++|+++++|+|+.+.
T Consensus 216 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~Iava~d~afnFy~~~~~~~L-~~~g~~~~~~~~~~d~ 282 (449)
T TIGR00379 216 LDKLLEIAETARNLPSPMSLLWEPQNSKYVRIAVAQDQAFNFYYQDNLDAL-THNAAELVPFSPLEDT 282 (449)
T ss_pred HHHHHHHhhcCCCccccccccccccCCCCcEEEEEechhhceeHHHHHHHH-HHCCCEEEEECCccCC
Confidence 999998875532211000000000111247899999999999 999999 9999999999998543
No 29
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.89 E-value=4.5e-22 Score=211.36 Aligned_cols=265 Identities=23% Similarity=0.300 Sum_probs=189.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
++++....+||||||+++.|+++|+++|++|..+.+. |+++|.. .+....|.+..+.+.+....+.+++.+..+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G---pd~~d~~-~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~- 79 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG---PDYIDPA-YHTAATGRPSRNLDSWMMGEELVRALFARAA- 79 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC---CCcccHH-HHHHHhCCCcccCCceeCCHHHHHHHHHHhc-
Confidence 3444445599999999999999999999999965553 3345543 4555677787777665555566677777763
Q ss_pred CCCcEEEEcCCCCccc------cHHHHHHHHhhhhccCCceEEEEEeCcc-hHHHHHHH---HHhhhcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQI------DKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~------d~~~~~el~~i~~~~~p~~vvLVvda~~-~~~~~~~~---~~f~~~~~i~GvIlnKvD 333 (481)
.++|++||+++|.+.. +..+..++++.+. .+++||+|+.. +......+ ..+...+++.|+|+||+.
T Consensus 80 ~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~----~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~ 155 (451)
T PRK01077 80 QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG----APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVG 155 (451)
T ss_pred ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC----CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCC
Confidence 6899999999866532 2345677777766 78999999843 33333333 345557889999999997
Q ss_pred CCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccHH
Q 011624 334 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 413 (481)
Q Consensus 334 ~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~ 413 (481)
...+...+...++.+|+|+ +|..|+.+++. +.+||||+ + ++.|..+.++..+.+.+.+++++|++
T Consensus 156 ~~~~~~~l~~~l~~~gipv--LG~IP~~~~l~------~p~r~lgl------~-~~~e~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T PRK01077 156 SERHYQLLREALERCGIPV--LGALPRDAALA------LPERHLGL------V-QASEHGDLEARLDALADLVEEHVDLD 220 (451)
T ss_pred ChhHHHHHHHHHHhcCCCE--EEEeeCCcccC------CCccccCC------C-CccccccHHHHHHHHHHHHHHcCCHH
Confidence 6656555566666789999 89998888765 45559999 5 55565556667788888999999999
Q ss_pred HHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcc---hhHHHHHHccChhhhccCCccc
Q 011624 414 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSL---KIMEAMIEAMTPGIFFFSIIII 475 (481)
Q Consensus 414 ~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f---~~~~~li~sm~~e~~~~~~l~~ 475 (481)
.+++..+..... ..........+ .++++|+++|.+||| ++++.| +++|+++++|+|+-+
T Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~iava~d~af~f~y~e~~~~L-~~~g~~~~~~~~~~~ 282 (451)
T PRK01077 221 ALLALARAAPPP-PPAAAPPPPAP-PGVRIAVARDAAFNFYYPENLELL-RAAGAELVFFSPLAD 282 (451)
T ss_pred HHHHHHhCCCcc-cccccccccCC-CCceEEEEecCcccccHHHHHHHH-HHCCCEEEEeCCcCC
Confidence 988766432100 00000000011 247899999999999 699999 899999999999744
No 30
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.81 E-value=2.4e-18 Score=172.24 Aligned_cols=149 Identities=31% Similarity=0.446 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEE
Q 011624 110 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLA 189 (481)
Q Consensus 110 i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~ 189 (481)
.+..+.++++.|+++||+.+++++|++.+.+. .+.+.+.+.+.+.|.+.+........+ ..++++++|+
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~v 200 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPER----------ADAEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIALV 200 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEEE
Confidence 34567899999999999999999999998642 233456778888998888632222222 2357899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCc
Q 011624 190 GLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267 (481)
Q Consensus 190 G~~GvGKTTta~~LA~~L~~~-G-~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D 267 (481)
|++||||||++++||.++..+ | ++|.+|++|+||.++.+++..|++..|+++.... ++.+ +.+.+..+ .++|
T Consensus 201 GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~-l~~~l~~~--~~~d 274 (282)
T TIGR03499 201 GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKE-LRKALDRL--RDKD 274 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHH-HHHHHHHc--cCCC
Confidence 999999999999999999876 5 9999999999999999999999999999986543 3333 35666665 5799
Q ss_pred EEEEcCCC
Q 011624 268 VVIVDTAG 275 (481)
Q Consensus 268 ~VIIDt~G 275 (481)
+|||||+|
T Consensus 275 ~vliDt~G 282 (282)
T TIGR03499 275 LILIDTAG 282 (282)
T ss_pred EEEEeCCC
Confidence 99999997
No 31
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.68 E-value=1.4e-15 Score=161.20 Aligned_cols=222 Identities=15% Similarity=0.178 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCccccccccCCCCEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc--hhHHH--HHHHhh
Q 011624 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAID--QLVILG 234 (481)
Q Consensus 160 ~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r--p~aid--ql~~~~ 234 (481)
.+++.+..-.|...........+|..++++|. +|+||||+++.|+++|+++ |. +|+ |+++| +. .|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~-----~fK~GpD~id~~p~-~~~ 285 (476)
T PRK06278 215 ILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VF-----VAKIGPDVRDIVPS-LYL 285 (476)
T ss_pred HHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eE-----EEcCCCChhhcCCc-cee
Confidence 34444444445332222222334556777777 9999999999999999976 77 555 56665 31 222
Q ss_pred ---hhcCCCeec--CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCcccc------HHHHHHHHhhhhccCCceEEEEE
Q 011624 235 ---EQVGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVV 303 (481)
Q Consensus 235 ---~~~gv~v~~--~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d------~~~~~el~~i~~~~~p~~vvLVv 303 (481)
...+.++.+ .+.+++..+.+.. ++..++|++||+++|.+... ..+..++++.+. .+|+||+
T Consensus 286 ~~~~~sp~~a~n~~~d~~~~~~~~~~~----~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~----~PVILV~ 357 (476)
T PRK06278 286 LREKMTKYNSIKIGDRGWSDVEEFLEF----VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG----FPVYIVS 357 (476)
T ss_pred cccccCChHHHhhcCCcccCHHHHHHH----HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC----CCEEEEE
Confidence 344555555 4445565555433 22247899999999766431 135667777776 7899999
Q ss_pred eCcch--HHHHHHH---HHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhh
Q 011624 304 DAMTG--QEAAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 376 (481)
Q Consensus 304 da~~~--~~~~~~~---~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~ 376 (481)
|+..+ ..++..+ ..| ++.+++.|||+|++.+..|...+..+.+.+|+|| +|+ ++ +. +.+
T Consensus 358 ~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpV--LG~-~~---~~------~~~-- 423 (476)
T PRK06278 358 SCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINL--IGV-GK---LK------VEK-- 423 (476)
T ss_pred cCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCE--EEe-cc---cc------ccc--
Confidence 99433 4444443 345 5578899999999998888888788888899999 888 55 11 112
Q ss_pred cCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccHHHHHHHHhh
Q 011624 377 LGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRT 421 (481)
Q Consensus 377 lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~~l~~~~~~ 421 (481)
||+ + ++.|. +.++..+.+++ +++++|++.+++.++.
T Consensus 424 lGL------v-~~~e~-~~~~~~~~~~~-~~~~~d~~~i~~~a~~ 459 (476)
T PRK06278 424 RGL------I-PEVEI-DYEEFCKAAME-VDENIDIPKIEINAKN 459 (476)
T ss_pred cCC------C-Chhhh-hHHHHHHHHHH-HHhcCCHHHHHHHhcC
Confidence 677 5 55665 56666677788 8999999999876543
No 32
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.67 E-value=3e-15 Score=138.41 Aligned_cols=153 Identities=21% Similarity=0.285 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
|.+.+++||+||||++.+||.+++++|++|++||+|++++.....+ . .......++..++.....
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~---~------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW---R------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---h------------CcchHHHHHHHHHHhhcC
Confidence 4455688999999999999999999999999999999987632111 0 001233445555554346
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch-HHHHHHHHHhh-hcCCeeEEEEcCCCCC----Cc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QEAAALVTTFN-IEIGITGAILTKLDGD----SR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~-~~~~~~~~~f~-~~~~i~GvIlnKvD~~----~~ 337 (481)
+||+|||||||.... .. . . +......+.+++|+.+. .. .++.+..+.+. ...++.|+|+|+++.. .+
T Consensus 67 ~yD~VIiD~pp~~~~-~~-~-~---~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTGD-EH-L-T---LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCcH-HH-H-H---HHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 899999999998641 11 1 1 11112237788888763 22 23333333222 2456889999999752 11
Q ss_pred ------hhHHHHHHHHhCCCeEEeecCCC
Q 011624 338 ------GGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 338 ------~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
.+.+..+++..+.|+ ++..|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~--~~~ip~ 167 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPL--LGKIPL 167 (169)
T ss_pred cccccCCccHHHHHHHcCCCE--EEeccC
Confidence 124466777778877 776643
No 33
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.67 E-value=1.2e-15 Score=146.37 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=102.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH------------HHHH-------------HhhhhcC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLV-------------ILGEQVG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai------------dql~-------------~~~~~~g 238 (481)
++|.+.|||||||||++.+||.+|+++|+||++||+|++..... +-+. .+....|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 36788899999999999999999999999999999999863221 0010 0001135
Q ss_pred CCeecCCCCCCHH-----------HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc
Q 011624 239 VPVYTAGTEVKPS-----------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (481)
Q Consensus 239 v~v~~~~~~~~~~-----------~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~ 307 (481)
+.+++.+...... ..++ .+..+ .++||||||||+|...... ....+. ....+.+++|+.+..
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~-~~~~l~----~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGG-FAMPIR----EGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecc-cccccc----cccCcEEEEEecccH
Confidence 5555544322110 1122 33333 3689999999987653111 111111 012377888887632
Q ss_pred -h----HHHHHHHHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 308 -G----QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 308 -~----~~~~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
+ ....+.++.+.. ...+.|+|+||++...+...+..+.+.++.|+ ++..|
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v--l~~IP 210 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV--IHFVP 210 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE--EEecC
Confidence 2 223334455533 45678999999997655555677788888888 65544
No 34
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.63 E-value=1.5e-14 Score=150.00 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=101.6
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---hhh-----------hcCCCeecCC---
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGE-----------QVGVPVYTAG--- 245 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---~~~-----------~~gv~v~~~~--- 245 (481)
++|++ +|+|||||||++.+||.+|++.|+||+|||+|+|.|.....+.. +.. ..|+.....+
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l~ 187 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYLV 187 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHhc
Confidence 56665 69999999999999999999999999999999999764322210 000 0011100000
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc--chHHHHHHH
Q 011624 246 --------TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV 315 (481)
Q Consensus 246 --------~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~--~~~~~~~~~ 315 (481)
........+++.+....+++||||||||||... +..+. +......+.+++|+... ...++...+
T Consensus 188 ~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~l~-----~~~l~aad~viiV~tp~~~s~~da~~~i 261 (369)
T PRK11670 188 TDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQLT-----LAQNIPVTGAVVVTTPQDIALIDAKKGI 261 (369)
T ss_pred CcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHHHH-----HhhhccCCeEEEEecCchhHHHHHHHHH
Confidence 000112344555543335789999999998764 22111 11112236777777552 223444444
Q ss_pred HHh-hhcCCeeEEEEcCCCCCCc--------h--hHHHHHHHHhCCCeEEeecCCCC
Q 011624 316 TTF-NIEIGITGAILTKLDGDSR--------G--GAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 316 ~~f-~~~~~i~GvIlnKvD~~~~--------~--g~~~~~~~~~glPV~~ig~g~~v 361 (481)
+.+ +.++++.|+|+|+.+.... . +....+++.++.|+ ++..+..
T Consensus 262 ~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~l--l~~IP~~ 316 (369)
T PRK11670 262 VMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQL--LGQMPLH 316 (369)
T ss_pred HHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcE--EEEeCCC
Confidence 444 3467789999999874321 1 13456777888887 5655443
No 35
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.62 E-value=7.7e-15 Score=146.17 Aligned_cols=172 Identities=18% Similarity=0.181 Sum_probs=94.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HHHHH-----------HhhhhcCCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLV-----------ILGEQVGVP 240 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------idql~-----------~~~~~~gv~ 240 (481)
++|+++|||||||||++.+||..|+++|+||++||+|++-... .+-+. ......|+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~ 81 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR 81 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence 3677779999999999999999999999999999999985221 11110 000012444
Q ss_pred eecCCCC-----C-CHHHHHH-HHHHHHH----cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch
Q 011624 241 VYTAGTE-----V-KPSQIAK-QGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG 308 (481)
Q Consensus 241 v~~~~~~-----~-~~~~~l~-~~l~~~~----~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~ 308 (481)
+++.+.. . .....++ ..++.+. .++||||||||+|..... .+... ......+.+++++.+. .+
T Consensus 82 ~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~-~l~~~----~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCG-GFAMP----IRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred EEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccC-Ccccc----cccccccEEEEEecCchhH
Confidence 4443210 0 0111111 2333331 257999999998764211 11100 0001237778877662 12
Q ss_pred -H---HHHHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCC
Q 011624 309 -Q---EAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 362 (481)
Q Consensus 309 -~---~~~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~ 362 (481)
. ...+.++.. +.++.+.|+|+|+.....+......+.+.++.++ ++..+...
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~~~e~~~~l~~~~~~~l--l~~Ip~~~ 214 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKIGTQM--IHFVPRDN 214 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCchHHHHHHHHHHcCCce--EEeCCCCH
Confidence 2 222333333 3467788999997643233333455566677666 45554443
No 36
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.61 E-value=5.2e-15 Score=147.31 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=97.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH------------HHHHHh------------hhhcCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVGV 239 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai------------dql~~~------------~~~~gv 239 (481)
++|.++|||||||||++.+||..|+++|+||++||+|++.+... +-+... ....|+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~~i 81 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI 81 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCCCe
Confidence 36666799999999999999999999999999999999854321 111000 000134
Q ss_pred CeecCCCCC------CH----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch
Q 011624 240 PVYTAGTEV------KP----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG 308 (481)
Q Consensus 240 ~v~~~~~~~------~~----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~ 308 (481)
.+++.+... .. ...+.+.+..+ +++||||||||+|....+ .+...+ .....+.+++|+.+. ..
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~-~~~~~~----al~aad~vlip~~p~~~s 155 (273)
T PRK13232 82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCG-GFAMPI----REGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeEC-CEeccc----cccccceEEEecCchHHH
Confidence 444432110 00 01234555544 368999999998765311 011000 001237778887662 11
Q ss_pred -HH---HHHHHHHh-hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC
Q 011624 309 -QE---AAALVTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 309 -~~---~~~~~~~f-~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v 361 (481)
.. ..+.+..+ +..+.+.|+|+|+.+...+......+.+.++.++ ++..+..
T Consensus 156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~~ 211 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL--IHFVPRD 211 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCe--EEECCCC
Confidence 22 22333332 3456788999998764333333455666777766 5544433
No 37
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.59 E-value=1.8e-14 Score=142.55 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH------------HHHHHhhh------------hcCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVILGE------------QVGV 239 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai------------dql~~~~~------------~~gv 239 (481)
++|+++|||||||||++.+||.+|+++|+||++||+|++..... +.+..... ..|+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 81 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI 81 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCCCe
Confidence 36667799999999999999999999999999999999853221 11110000 1244
Q ss_pred CeecCCCCCC-----------HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-
Q 011624 240 PVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 307 (481)
Q Consensus 240 ~v~~~~~~~~-----------~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~- 307 (481)
.+++.+.... ....+ +.+..+ ..+||||||||+|..... .+...+ .....+.+++|+.+..
T Consensus 82 ~~ip~~~~~~~~~~~~~~~~~~~~~l-~~l~~~-~~~yD~viID~~g~~~~~-~~~~~~----~~~aaD~vlip~~p~~~ 154 (270)
T cd02040 82 KCVESGGPEPGVGCAGRGVITAINLL-EELGAY-EDDLDFVIYDVLGDVVCG-GFAMPI----REGKAQEIYIVTSGEMM 154 (270)
T ss_pred EEEeCCCCCCCCCCcCcchhhHHHHH-HhcCcc-ccCCCEEEEecccCcccC-Cccccc----ccccccEEEEEecCchH
Confidence 5554432110 01111 222222 257999999998764211 111000 0011377888877632
Q ss_pred h-H---HHHHHHHHhh--hcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC
Q 011624 308 G-Q---EAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 308 ~-~---~~~~~~~~f~--~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v 361 (481)
+ . ...+.+..+. .+.++.|||+|+.....+...+..+.+.++.++ ++..+..
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~v--l~~Ip~~ 212 (270)
T cd02040 155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQM--IHFVPRD 212 (270)
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCe--EeecCCc
Confidence 2 1 2223333443 246788899998643333444566777788887 5555433
No 38
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.59 E-value=3.7e-14 Score=138.50 Aligned_cols=164 Identities=24% Similarity=0.362 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------------HHHHH--------HhhhhcCCCeec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLV--------ILGEQVGVPVYT 243 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------------idql~--------~~~~~~gv~v~~ 243 (481)
|.+++++|||||||++.+||.+|+++|++|++||+|++.+.. .+.+. .+....|+.+++
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp 82 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVIP 82 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEEe
Confidence 444568899999999999999999999999999999964321 11110 000112444554
Q ss_pred CCCCCC-----HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch-HHHHHHHH
Q 011624 244 AGTEVK-----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QEAAALVT 316 (481)
Q Consensus 244 ~~~~~~-----~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~-~~~~~~~~ 316 (481)
.+.... ..+.+.+.+..+. ++||+|||||||.... .....+ . ..+.+++|+++. .+ .++.....
T Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~l----~--~ad~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 83 AGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTAL----A--AADELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHHH----H--hCCeEEEEECCCCchHHHHHHHHH
Confidence 432211 1234566666664 6899999999988642 122221 1 237788888873 22 22222222
Q ss_pred Hh-hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 317 TF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 317 ~f-~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
.. .....+.|+|+|+++.....-....+.+.++.|+ ++..+
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~~~~~--l~~Ip 195 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETILEVPV--LGVVP 195 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhhCCcE--EEEec
Confidence 11 2245678999999986432212233445567777 45443
No 39
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.59 E-value=5.2e-14 Score=133.95 Aligned_cols=144 Identities=24% Similarity=0.315 Sum_probs=91.7
Q ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH---------Hh-------------hhhcCC
Q 011624 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------IL-------------GEQVGV 239 (481)
Q Consensus 183 ~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~---------~~-------------~~~~gv 239 (481)
+++|+++ +++|+||||++.+||.+|+++|++|++||+|++.|.....+. .+ ....++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 5667665 679999999999999999999999999999998765321110 00 011244
Q ss_pred CeecCCCC-CCHH-----HHHHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cchH-H
Q 011624 240 PVYTAGTE-VKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTGQ-E 310 (481)
Q Consensus 240 ~v~~~~~~-~~~~-----~~l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~~-~ 310 (481)
.+++.+.. ..+. +.+++.++.++ .+||+||||||+.... +... +.. ..+.+++|+++ .+.. .
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~------~~~--~~D~vilV~~~~~~~~~~ 167 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI------IAR--ACDASILVTDAGEIKKRD 167 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH------HHH--hCCeEEEEEECCCCCHHH
Confidence 45544332 2222 23456777774 7899999999985322 2221 111 13889999988 3333 3
Q ss_pred HHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 311 AAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
+...++.+. .+..+.|+|+||++..
T Consensus 168 ~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 168 VQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 333323232 2347899999999854
No 40
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.58 E-value=2.7e-14 Score=142.17 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHH------------HHHHHh------------hhhcC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~ai------------dql~~~------------~~~~g 238 (481)
++|+|+|||||||||++.+||.+|++ +|+||++||+|++..... +-+... ....|
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence 57777799999999999999999997 599999999999863221 111000 00124
Q ss_pred CCeecCCCCCC------HHHH----HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-c
Q 011624 239 VPVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-T 307 (481)
Q Consensus 239 v~v~~~~~~~~------~~~~----l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~ 307 (481)
+.+++.+.... .... +++.++.+ .++||||||||+|....+ .+..-+.. ...+.+++|+.+. .
T Consensus 83 l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~iliD~~~~~~~~-al~~~~~~----~aad~viIp~~p~~~ 156 (275)
T PRK13233 83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAY-TDDLDFVFFDVLGDVVCG-GFAMPIRD----GKAQEVYIVASGEMM 156 (275)
T ss_pred cEEEECCCCCCCCCCCCcchhHHHHHHHHcCCc-cCCCCEEEEecCCceeec-cccccchh----ccCceEEEeccccHH
Confidence 55555443221 1112 22333334 367999999997754211 11100000 1237788887763 2
Q ss_pred h-HHH---HHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 308 G-QEA---AALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 308 ~-~~~---~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
+ ..+ .+.+... +.++.+.|+|+|+.....+......+.+.++.++ ++..+.
T Consensus 157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~--l~~Ip~ 213 (275)
T PRK13233 157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQM--IHFVPR 213 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCce--eeecCc
Confidence 2 222 2222222 4467789999998642222333455666677766 454433
No 41
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.58 E-value=4.6e-14 Score=142.33 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=120.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HHHHHH-------------hhhhc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGEQV 237 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------idql~~-------------~~~~~ 237 (481)
-+++.+.|||||||||++.+||..|+++|+||++||+|++-+.. .+-+.. .....
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~~~ 85 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTGFR 85 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeCCC
Confidence 37899999999999999999999999999999999999874221 111110 01123
Q ss_pred CCCeecCCCC------CCHHHHHHHHHHHHH----cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-
Q 011624 238 GVPVYTAGTE------VKPSQIAKQGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM- 306 (481)
Q Consensus 238 gv~v~~~~~~------~~~~~~l~~~l~~~~----~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~- 306 (481)
|+.+++.+.. ....... .++.+. +++||||+|||++..... .+...+. ....+.+++|+.+.
T Consensus 86 gv~llpa~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~yD~vliD~~~~~~~~-~~~~~~~----l~aAD~vIIvttpe~ 158 (296)
T PRK13236 86 GVKCVESGGPEPGVGCAGRGIIT--AINFLEENGAYQDLDFVSYDVLGDVVCG-GFAMPIR----EGKAQEIYIVTSGEM 158 (296)
T ss_pred CeEEEECCCCCCCCCCcceeehh--hhHHHHhcCccccCCEEEEeccccceec-cccccch----hccCCEEEEecCcch
Confidence 5556654311 1111111 223332 368999999997543211 1111110 11237788887662
Q ss_pred ch-HHHH---HHH-HHh-hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcC--hhhHhhhhcC
Q 011624 307 TG-QEAA---ALV-TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFY--PDRMAGRILG 378 (481)
Q Consensus 307 ~~-~~~~---~~~-~~f-~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~--~~~~~~r~lG 378 (481)
.. .++. ..+ +.. +..+++.|+|+|+.+.......+..+.+.++.++ ++..++...+.... ...+.....+
T Consensus 159 ~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~ile~l~~~~g~~v--l~~Ip~~~~v~eA~~~~~Pv~~~~p~ 236 (296)
T PRK13236 159 MAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQM--IHFVPRDNIVQHAELRRMTVNEYAPD 236 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHHHHHHHHHhCccc--eeeCCCChHHHHHHHcCCChhhcCCC
Confidence 22 2222 112 222 4467788999999754433334456667777776 56555443322111 1111222222
Q ss_pred CchhHHHHHHHHHhhchhHHHHHHHhhhcccccHHHHHHHHhhhhc
Q 011624 379 MGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVAR 424 (481)
Q Consensus 379 lgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~~l~~~~~~~~~ 424 (481)
.....+|.+.+++.... .....-..+|.+.|.+.++....
T Consensus 237 s~~a~~y~~La~ell~~------~~~~~p~~~~~~~~~~~~~~~~~ 276 (296)
T PRK13236 237 SNQGNEYRALAKKIINN------DNLTIPTPIEMEELEELLIEFGI 276 (296)
T ss_pred CHHHHHHHHHHHHHHhc------CCCCCCCCCCHHHHHHHHHHhhh
Confidence 22223333223222111 11122346888888888776643
No 42
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.58 E-value=7.9e-14 Score=129.82 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee--cCCCCCCH---------HH-
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY--TAGTEVKP---------SQ- 252 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~--~~~~~~~~---------~~- 252 (481)
|.+.+|+||+||||++.+||..| ++|++||+|+++|.....+ ......+.... ......+. ..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFL-KPEIEEEEDFIVGGKKAVIDPELCISCGLCGKL 76 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhc-CCCccccccceecCCceEEchhhhccccchHHH
Confidence 56778999999999999999999 7999999999987753322 11111111111 00000000 11
Q ss_pred --HHHHHHHH-HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HHHHHHHHHhhh-cCCeeE
Q 011624 253 --IAKQGLEE-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALVTTFNI-EIGITG 326 (481)
Q Consensus 253 --~l~~~l~~-~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~~~~~~~f~~-~~~i~G 326 (481)
.+.+.+.. ...++||+|||||||.... .... ... ..+.+++|+.+.. . .++...++.+.. +.+ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~~----~l~--~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~ 147 (179)
T cd03110 77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVIA----SLT--GADAALLVTEPTPSGLHDLERAVELVRHFGIP-VG 147 (179)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHHH----HHH--cCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EE
Confidence 11111111 1126899999999987642 1111 112 2377888887732 2 233333332221 233 48
Q ss_pred EEEcCCCCCCc-hhHHHHHHHHhCCCeEEeecC
Q 011624 327 AILTKLDGDSR-GGAALSVKEVSGKPIKLVGRG 358 (481)
Q Consensus 327 vIlnKvD~~~~-~g~~~~~~~~~glPV~~ig~g 358 (481)
+|+||+|.... ...+...++..|+|+ ++..
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~v--l~~i 178 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPI--LGKI 178 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCe--EEeC
Confidence 99999997543 344566778889998 6654
No 43
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.57 E-value=8.1e-14 Score=138.36 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHH--------------hhhhcC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~--------------~~~~~g 238 (481)
+||+++|||||||||++.+||.+|+++|+||++||+|++.... .+-+.. +....|
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 82 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYNG 82 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCCC
Confidence 5788889999999999999999999999999999999874221 111100 000135
Q ss_pred CCeecCCCCCCH-------HHHHHHHHHHH-HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-
Q 011624 239 VPVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G- 308 (481)
Q Consensus 239 v~v~~~~~~~~~-------~~~l~~~l~~~-~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~- 308 (481)
+.+++.+..... .......+..+ ..++||+|||||+|...... +...+ ...+.+++++.+.. .
T Consensus 83 l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~l------~~AD~viip~~~~~~sl 155 (270)
T PRK13185 83 VDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAPL------QYADYALIVTANDFDSI 155 (270)
T ss_pred cEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-ccchh------hhCcEEEEEecCchhhH
Confidence 566644332210 01111222221 12579999999988753221 11111 11377777776622 1
Q ss_pred ---HHHHHHHHH--hhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 309 ---QEAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 309 ---~~~~~~~~~--f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
+...+.++. .+..+.+.|+|+|+.+.. ..+..+.+..+.|+ ++..+.
T Consensus 156 ~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~---~~~~~~~~~~g~~v--l~~Ip~ 207 (270)
T PRK13185 156 FAANRIAAAIQAKAKNYKVRLAGVIANRSAGT---DLIDKFNEAVGLKV--LAHVPD 207 (270)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEeccChH---HHHHHHHHHcCCCE--EEECCC
Confidence 122333322 244566789999998732 33456667778887 454433
No 44
>PHA02518 ParA-like protein; Provisional
Probab=99.57 E-value=9.5e-14 Score=132.08 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=91.7
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
+|.+ ..+|||||||++.+||.+|+++|++|++||+|+++..... ... .. .+.+.++.... ...+.+.+..+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~-~~-~~~~~i~~~~~---~~~~~~~l~~~~- 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEA-RE-EGEPLIPVVRM---GKSIRADLPKVA- 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHh-cc-cCCCCCchhhc---cHHHHHHHHHHh-
Confidence 4555 5779999999999999999999999999999999865422 111 11 11112211111 122344555553
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--H---HHHHHHH---HhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAAALVT---TFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~---~~~~~~~---~f~~~~~i~GvIlnKvD~~ 335 (481)
..||+|||||||.... .+.. ++. ..+.+++++.+... . .....++ .++......++|+|+.+..
T Consensus 75 ~~~d~viiD~p~~~~~---~~~~---~l~--~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE---LARA---ALR--IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCccH---HHHH---HHH--HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 6899999999997531 1211 111 13777777776321 1 2222222 2344556778999998754
Q ss_pred Cc-hhHHHHHHHHhCCCe
Q 011624 336 SR-GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~-~g~~~~~~~~~glPV 352 (481)
.. ...+.......+.|+
T Consensus 147 ~~~~~~~~~~l~~~~~~~ 164 (211)
T PHA02518 147 TQLYREARKALAGYGLPI 164 (211)
T ss_pred chHHHHHHHHHHHcCchh
Confidence 33 334555555567776
No 45
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.56 E-value=3.3e-14 Score=135.27 Aligned_cols=165 Identities=24% Similarity=0.273 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeccCCchhHHHH----------------HHHh--------------
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQ----------------LVIL-------------- 233 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G-~kVlLId~D~~rp~aidq----------------l~~~-------------- 233 (481)
.|+++|+||+||||+++.|+..|.++| ++|++||+|+ -++..++ ++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 689999999999999999888877665 9999999997 2221111 1110
Q ss_pred -------------hhhcCCCeecCCC-------CCCHH-HHHHHHHHHHHcCCCcEEEEcC-CCCccccHHHHHHHHhhh
Q 011624 234 -------------GEQVGVPVYTAGT-------EVKPS-QIAKQGLEEAKKKNVDVVIVDT-AGRLQIDKAMMDELKDVK 291 (481)
Q Consensus 234 -------------~~~~gv~v~~~~~-------~~~~~-~~l~~~l~~~~~~~~D~VIIDt-~G~~~~d~~~~~el~~i~ 291 (481)
.+..++.+...+. ..+|. .++++.+.++....+|+||||| +|.-|.......
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~------ 154 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE------ 154 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccccc------
Confidence 0001122222211 22333 4668888888767799999999 554443322222
Q ss_pred hccCCceEEEEEeCcc-hHHHHHHHHHhhhcC--CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 292 RVLNPTEVLLVVDAMT-GQEAAALVTTFNIEI--GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 292 ~~~~p~~vvLVvda~~-~~~~~~~~~~f~~~~--~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
..|-++.|+|++. +-..+..++.....+ +-.++|+||+|.. ...+.......+++| +|..|..+.
T Consensus 155 ---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~v--lg~iP~d~~ 222 (255)
T COG3640 155 ---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEV--LGVIPYDPE 222 (255)
T ss_pred ---CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeE--EEEccCCHH
Confidence 2377899999853 223333334443333 4578999999976 455566777788888 777755443
No 46
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.55 E-value=8.1e-14 Score=138.21 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHH----hh----------hhcCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI----LG----------EQVGV 239 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~----~~----------~~~gv 239 (481)
+|++.|||||||||++.+||.+|+++|+||++||+|++-... .+-+.. +. ...|+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV 81 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence 466679999999999999999999999999999999974211 111100 00 01355
Q ss_pred CeecCCCCCCH-------HHHHHHHHHHH-HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-H
Q 011624 240 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-Q 309 (481)
Q Consensus 240 ~v~~~~~~~~~-------~~~l~~~l~~~-~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~ 309 (481)
.+++.+..... .......+... ...+||+|||||+|.+.... .... + ...+.+++++.+.. . .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~-~~~~----l--~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGG-FATP----L--QYADYALVVAANDFDALF 154 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCc-cccc----h--hhcCEEEEEecCchhHHH
Confidence 55544332110 00011122221 12579999999988653211 1001 1 12366777766522 1 1
Q ss_pred ---HHHHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 310 ---EAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 310 ---~~~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
...+.++.. +..+.+.|+|+|+++.. ..+..+.+..+.|+ ++..+
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---~~~~~~~~~~~~~v--l~~I~ 204 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT---DLIERFNERVGMPV--LGVVP 204 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH---HHHHHHHHHcCCCE--EEEcC
Confidence 222222222 34566789999999865 23344556678887 55443
No 47
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.55 E-value=1.2e-13 Score=137.10 Aligned_cols=166 Identities=25% Similarity=0.309 Sum_probs=100.9
Q ss_pred CEEE-EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhh--------------------hhcCCCe
Q 011624 183 PTVI-LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG--------------------EQVGVPV 241 (481)
Q Consensus 183 ~~VI-~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~--------------------~~~gv~v 241 (481)
.++| +.+|++|+||||++.+||..+++.|+||+++|+|.+.|....-+..-. ...++.+
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 3445 457999999999999999999999999999999999877543332100 0001111
Q ss_pred ecCC-CCCCHH-----HHHHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cch-HHHH
Q 011624 242 YTAG-TEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QEAA 312 (481)
Q Consensus 242 ~~~~-~~~~~~-----~~l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~-~~~~ 312 (481)
.... ....+. ..+++.+..+++.+|||+|||+||.... +...+.. .++.+++|+.. .+. .++.
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~--------~~~g~viVt~p~~~~~~~v~ 208 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQR--------IPDGVVIVTTPGKTALEDVK 208 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhc--------cCCeEEEEeCCccchHHHHH
Confidence 1111 122332 2457888888877799999999988653 2222221 23577888766 333 3333
Q ss_pred HHHHHh-hhcCCeeEEEEcCCCCCC-ch--hHHHHHHHHhCCCeEEeecCC
Q 011624 313 ALVTTF-NIEIGITGAILTKLDGDS-RG--GAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 313 ~~~~~f-~~~~~i~GvIlnKvD~~~-~~--g~~~~~~~~~glPV~~ig~g~ 359 (481)
..+..+ ..+.++.|||.|+.+-.. +. |......+..+ |+ +|..+
T Consensus 209 ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~-~~--~g~~p 256 (265)
T COG0489 209 KAIDMLEKAGIPVLGVVENMSYFICPRCGEGGGEKYAERYG-PY--LGSIP 256 (265)
T ss_pred HHHHHHHhcCCceEEEEecCccCcccccCCCchhhHHHHhc-cc--cccCC
Confidence 333333 235679999999887432 22 33444444444 33 55443
No 48
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.55 E-value=1.8e-13 Score=135.71 Aligned_cols=166 Identities=24% Similarity=0.257 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh-----------HHHHHHH----hh----------hhcCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-----------AIDQLVI----LG----------EQVGV 239 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~-----------aidql~~----~~----------~~~gv 239 (481)
+|+++|||||||||++.+||.+|+++|+||++||+|++-.. ..+-+.. .. ...|+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 57777999999999999999999999999999999987311 1111100 00 01255
Q ss_pred CeecCCCCCCH-------HHHHHHHHHHH-HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-H
Q 011624 240 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-Q 309 (481)
Q Consensus 240 ~v~~~~~~~~~-------~~~l~~~l~~~-~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~ 309 (481)
.+++.+..... .......++.. ...+||+|||||+|..... .+...+ ...|.+++++.+.. . .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~-~~~~al------~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCG-GFAAPL------NYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCcccc-cchhhh------hhcCEEEEEecCCcccHH
Confidence 55544322111 00011122221 1247999999998875321 111111 11377788877632 1 1
Q ss_pred ---HHHHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCC
Q 011624 310 ---EAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 362 (481)
Q Consensus 310 ---~~~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~ 362 (481)
...+.++.. +..+.+.|+|+|+++.. ..+..+.+.++.|+ ++..+...
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~---~~i~~~~~~~~~~v--l~~Ip~~~ 207 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT---DLIDKFVEAVGMPV--LAVLPLIE 207 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH---HHHHHHHHhCCCCE--EEEecCCc
Confidence 222223222 34566789999999853 23445566678887 55544433
No 49
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.55 E-value=8e-14 Score=140.49 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=99.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HHHHHH-------------hhhhc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGEQV 237 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------idql~~-------------~~~~~ 237 (481)
-++|.|+|+|||||||++.+||..|+++|+||++||+|++.+.. .+-+.. +....
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 83 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheecCC
Confidence 35787789999999999999999999999999999999975322 111100 01123
Q ss_pred CCCeecCCCCCC------HHHHHH-HHHHHHH-cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch
Q 011624 238 GVPVYTAGTEVK------PSQIAK-QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG 308 (481)
Q Consensus 238 gv~v~~~~~~~~------~~~~l~-~~l~~~~-~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~ 308 (481)
|+.+++.+.... ....++ ..++.+. .++||||||||+|....+ .+...+. ....+.+++++.+. .+
T Consensus 84 gl~lipa~~~~~~~~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~n-al~~~~~----~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCG-GFAMPIR----ENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CeEEEECCCCCCCCCCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceEC-CCccccc----cccCceEEEecCccHHH
Confidence 555655432111 112233 2454432 258999999997654211 1111100 00237788888762 22
Q ss_pred -HH---HHHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC
Q 011624 309 -QE---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 309 -~~---~~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v 361 (481)
.. ..+.+... +..+.+.|+|+|+.....+...+..+.+.++.++ ++..+..
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~l--l~~Ip~d 215 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKL--IHFVPRD 215 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCce--EEECCCc
Confidence 12 22233333 2346688999997654433334455556677776 4544443
No 50
>PRK00784 cobyric acid synthase; Provisional
Probab=99.54 E-value=7e-14 Score=150.17 Aligned_cols=222 Identities=20% Similarity=0.305 Sum_probs=133.5
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------------HHHHHHhh-hhcCC-------Cee
Q 011624 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILG-EQVGV-------PVY 242 (481)
Q Consensus 185 VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------------idql~~~~-~~~gv-------~v~ 242 (481)
-++++|. +|||||++++.|+++|+++|++|. +|+|-. ......+. ...++ |++
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~-----~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~ 78 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVA-----PFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVL 78 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe-----cccchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEE
Confidence 3566666 999999999999999999999999 777620 00111111 10110 111
Q ss_pred -------------------cCCC------CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCcc-c----cHHHHHHHHhhhh
Q 011624 243 -------------------TAGT------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ-I----DKAMMDELKDVKR 292 (481)
Q Consensus 243 -------------------~~~~------~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~-~----d~~~~~el~~i~~ 292 (481)
+.+. .....+.+.+.+..+. .++|++||+++|... . +..+..++++.++
T Consensus 79 ~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~ 157 (488)
T PRK00784 79 LKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAAD 157 (488)
T ss_pred ecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHcC
Confidence 1100 1112233455666553 689999999986553 1 1234556666655
Q ss_pred ccCCceEEEEEeCcch---HHHHHHHHHhhh--cCCeeEEEEcCCCCCCc-hh-HHHHHHHHhCCCeEEeecCCCCCCCC
Q 011624 293 VLNPTEVLLVVDAMTG---QEAAALVTTFNI--EIGITGAILTKLDGDSR-GG-AALSVKEVSGKPIKLVGRGERMEDLE 365 (481)
Q Consensus 293 ~~~p~~vvLVvda~~~---~~~~~~~~~f~~--~~~i~GvIlnKvD~~~~-~g-~~~~~~~~~glPV~~ig~g~~v~dl~ 365 (481)
.++++|+++..+ ..+....+.+.. +.++.|+|+|+++.... .. ....+.+.+++|+ +|..|+.+++.
T Consensus 158 ----~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipv--LG~iP~~~~L~ 231 (488)
T PRK00784 158 ----APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPV--LGVLPYLDDLR 231 (488)
T ss_pred ----CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcCCC
Confidence 789999998443 222222233332 35899999999986421 11 1223445679999 88888876654
Q ss_pred CcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCccccc
Q 011624 366 PFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ 445 (481)
Q Consensus 366 ~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~ 445 (481)
. .++ ..+|+ ..+. + + +..+++++++
T Consensus 232 ~-~~e-------------------------------------~~~~~-----~~~~--~--~--------~~~~~~~i~v 256 (488)
T PRK00784 232 L-PAE-------------------------------------DSLAL-----LERA--A--R--------AGGGALRIAV 256 (488)
T ss_pred c-ChH-------------------------------------Hhccc-----hhcc--c--c--------CCCCceEEEE
Confidence 1 110 11221 0000 0 0 1112468999
Q ss_pred cc-hhhhcchhHHHHHHc-cChhhhccCCcc
Q 011624 446 VR-EAEKSLKIMEAMIEA-MTPGIFFFSIII 474 (481)
Q Consensus 446 ~~-d~a~~f~~~~~li~s-m~~e~~~~~~l~ 474 (481)
++ |.+|+|+|++.| +. .|+++++|||+-
T Consensus 257 ~~~~~a~~f~nl~~l-~~~~g~~v~~~s~~~ 286 (488)
T PRK00784 257 IRLPRISNFTDFDPL-RAEPGVDVRYVRPGE 286 (488)
T ss_pred EeCCCcCCccChHHH-hhcCCCeEEEECCcc
Confidence 99 999999999999 65 999999999963
No 51
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.53 E-value=2.8e-13 Score=134.82 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=92.2
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH---------------------HhhhhcCC
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVGV 239 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~---------------------~~~~~~gv 239 (481)
++++|+++ +++|+||||++.+||..|++.|++|++||+|+.+|.....+. ......++
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 46677775 669999999999999999999999999999988765321110 00011245
Q ss_pred CeecCCCC-CCHHH-----HHHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cch-HH
Q 011624 240 PVYTAGTE-VKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QE 310 (481)
Q Consensus 240 ~v~~~~~~-~~~~~-----~l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~-~~ 310 (481)
.+++.+.. .++.+ .+.+.+..++ +.|||||||||+.... +...... ..+.+++|+.+ .+. .+
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~~~--------~~d~vilV~~~~~t~~~~ 252 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIVAT--------RARGTLIVSRVNETRLHE 252 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHHHH--------hCCeEEEEEECCCCCHHH
Confidence 55555432 22322 2456677774 7899999999987542 3332222 13788999987 333 34
Q ss_pred HHHHHHHhh-hcCCeeEEEEcC
Q 011624 311 AAALVTTFN-IEIGITGAILTK 331 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnK 331 (481)
+.+.++.+. .+.++.|+|+|+
T Consensus 253 ~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 444444443 357789999996
No 52
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.52 E-value=3.2e-13 Score=124.88 Aligned_cols=145 Identities=22% Similarity=0.368 Sum_probs=88.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
|.+++++||+||||++.+||.+|+++|++|++||+|++.+.....+ +..... .....+. + .
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~~~---~~~~~~~----~-----~ 62 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLENRV---VYTLHDV----L-----A 62 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccccC---Ccchhhc----c-----c
Confidence 4556789999999999999999999999999999999865432111 111100 0010111 1 1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HHHHHHHHHhh-hcCCeeEEEEcCCCCCCch-hH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALVTTFN-IEIGITGAILTKLDGDSRG-GA 340 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~~~~~~~f~-~~~~i~GvIlnKvD~~~~~-g~ 340 (481)
+ |+|||||||.... .....+ . ..+.+++|+++.. . ..+...++... .+....++|+|+++..... ..
T Consensus 63 ~-d~viiD~p~~~~~--~~~~~l----~--~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 133 (179)
T cd02036 63 G-DYILIDSPAGIER--GFITAI----A--PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD 133 (179)
T ss_pred C-CEEEEECCCCCcH--HHHHHH----H--hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence 1 9999999987642 122211 1 2377888888732 2 23333333222 2356789999999876432 22
Q ss_pred -HHHHHHHhCCCeEEeecCC
Q 011624 341 -ALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 341 -~~~~~~~~glPV~~ig~g~ 359 (481)
...+.+.++.|+ ++..+
T Consensus 134 ~~~~~~~~~~~~v--~~~Ip 151 (179)
T cd02036 134 MVEDIEEILGVPL--LGVIP 151 (179)
T ss_pred HHHHHHHHhCCCE--EEEec
Confidence 244556678887 45443
No 53
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.52 E-value=1.3e-13 Score=138.57 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=95.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHH----hh----------hhcCCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI----LG----------EQVGVP 240 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~----~~----------~~~gv~ 240 (481)
|+++|||||||||++.+||.+|+++|+||++||+|++.... .+-+.. .. ...|+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 78899999999999999999999999999999999985321 010100 00 013455
Q ss_pred eecCCCCCCHH-------HHHHHHHHHHH-cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HH
Q 011624 241 VYTAGTEVKPS-------QIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE 310 (481)
Q Consensus 241 v~~~~~~~~~~-------~~l~~~l~~~~-~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~ 310 (481)
+++.+...... ......++.+. .++||||||||+|.... ..+.+.+ ...+.+++++++.. . ..
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~-~a~~aal------~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVC-GGFAAPL------NYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCccee-chhhhhh------hcCCEEEEEecCCHHHHHH
Confidence 55444322111 00111222222 14799999999887531 1111111 12377888887732 2 22
Q ss_pred ---HHHHHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 311 ---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 311 ---~~~~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
..+.++.. +..+.+.|+|+|+++.. ..+....+.++.|+ ++..+.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~---~~~~~~~~~~~~~v--l~~Ip~ 205 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPV--LEVLPL 205 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCch---hHHHHHHHHcCCce--EEECCC
Confidence 22222333 23456789999999843 23445666788887 554443
No 54
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.52 E-value=1.3e-13 Score=129.52 Aligned_cols=171 Identities=21% Similarity=0.346 Sum_probs=103.7
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC-ch-------------hH---------HHHH-HHhhhhcC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RP-------------AA---------IDQL-VILGEQVG 238 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~-rp-------------~a---------idql-~~~~~~~g 238 (481)
++|++ +|+|||||||++++|+.+|+++|+||.+||.|.- |. +. ..|. .......+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 35555 6999999999999999999999999999999963 10 00 1111 01111112
Q ss_pred CCeecCCC-----CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC--cchHHH
Q 011624 239 VPVYTAGT-----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEA 311 (481)
Q Consensus 239 v~v~~~~~-----~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda--~~~~~~ 311 (481)
+.+++... ..+| +.....+++++..+|||||||+|..... .....+ ...+..++|+.+ ++-.++
T Consensus 83 L~lLPAsQtrdKdalt~-E~v~~vv~eL~~~~fDyIi~DsPAGIE~--G~~~A~------~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 83 LFLLPASQTRDKDALTP-EGVKKVVNELKAMDFDYIIIDSPAGIEQ--GFKNAV------YFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred eEecccccccCcccCCH-HHHHHHHHHHHhcCCCEEEecCcchHHH--HHHhhh------hccceEEEEcCCCccccccc
Confidence 33333221 2233 3445677777768999999999977642 222221 234778888776 222333
Q ss_pred HHHH---HHhh--hcCC---eeEEEEcCCCCC-CchhHH---HHHHHHhCCCeEEeecCCCCCCCC
Q 011624 312 AALV---TTFN--IEIG---ITGAILTKLDGD-SRGGAA---LSVKEVSGKPIKLVGRGERMEDLE 365 (481)
Q Consensus 312 ~~~~---~~f~--~~~~---i~GvIlnKvD~~-~~~g~~---~~~~~~~glPV~~ig~g~~v~dl~ 365 (481)
-+++ .... ...+ -..+|+|+++.. ...|.. ..+.+.+.+|+ +|..|..+++-
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l--iGiiPed~~Vi 217 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL--IGVIPEDQDVL 217 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce--EEeecCchhhh
Confidence 3332 2111 1122 256999999843 334444 45677788999 99888776643
No 55
>CHL00175 minD septum-site determining protein; Validated
Probab=99.52 E-value=3.2e-13 Score=134.91 Aligned_cols=169 Identities=17% Similarity=0.263 Sum_probs=98.9
Q ss_pred CEEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH-----------Hhh-------------hhc
Q 011624 183 PTVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------ILG-------------EQV 237 (481)
Q Consensus 183 ~~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~-----------~~~-------------~~~ 237 (481)
.++|++ +|+|||||||++++||.+|+++|++|++||+|++.++....+. ... ...
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~ 94 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWK 94 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCC
Confidence 456666 5789999999999999999999999999999997533211100 000 012
Q ss_pred CCCeecCCCCCC----HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HHH
Q 011624 238 GVPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEA 311 (481)
Q Consensus 238 gv~v~~~~~~~~----~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~ 311 (481)
++.+++.+.... ..+.+.+.++.++...||+|||||||.... .....+ . ..+.+++|+++.. . .++
T Consensus 95 ~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l----~--~aD~viiV~~p~~~si~~~ 166 (281)
T CHL00175 95 NLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAI----A--PAQEAIVVTTPEITAIRDA 166 (281)
T ss_pred CeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHH----H--hcCeeEEEcCCChHHHHHH
Confidence 333333322111 122356667776533899999999987642 222221 1 1377888888732 2 233
Q ss_pred HHHHHHhhh-cCCeeEEEEcCCCCCCc--h--hHHHHHHHHhCCCeEEeecCCCC
Q 011624 312 AALVTTFNI-EIGITGAILTKLDGDSR--G--GAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 312 ~~~~~~f~~-~~~i~GvIlnKvD~~~~--~--g~~~~~~~~~glPV~~ig~g~~v 361 (481)
....+.+.. .....++|+|+++.... . -....+....+.|+ ++..+..
T Consensus 167 ~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~Ip~d 219 (281)
T CHL00175 167 DRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPL--LGAIPED 219 (281)
T ss_pred HHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCe--EEEccCC
Confidence 333332221 22346899999985421 1 12344666678887 5655433
No 56
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.52 E-value=6.4e-13 Score=129.28 Aligned_cols=92 Identities=21% Similarity=0.171 Sum_probs=60.8
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcC-CCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG-VPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~g-v~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
||++ ..||||||||++.+||.+|+++|++|++||+|++++.... . ......+ .+.............++..++.+.
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-K-ENALRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH-H-HhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 4544 5889999999999999999999999999999999865321 1 1111111 111000011122344566666664
Q ss_pred cCCCcEEEEcCCCCcc
Q 011624 263 KKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~ 278 (481)
.++||||||||||...
T Consensus 81 ~~~yD~iiID~pp~~~ 96 (231)
T PRK13849 81 LQGFDYALADTHGGSS 96 (231)
T ss_pred hCCCCEEEEeCCCCcc
Confidence 4679999999999764
No 57
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.52 E-value=1.6e-13 Score=137.13 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHH------------hhhhcCCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI------------LGEQVGVP 240 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~------------~~~~~gv~ 240 (481)
++|+++|+|||||||++.+||.+|+++|+||++||+|++.... .+-+.. +....|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~l~ 81 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNGIY 81 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCCcE
Confidence 4677779999999999999999999999999999999984211 111100 00112445
Q ss_pred eecCCCCCC------HHHHH-HHHHH---HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-
Q 011624 241 VYTAGTEVK------PSQIA-KQGLE---EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G- 308 (481)
Q Consensus 241 v~~~~~~~~------~~~~l-~~~l~---~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~- 308 (481)
+++.+.... ..... ...++ .+...+||||||||+|...... +.. .......+.+++++.+.. +
T Consensus 82 lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~-l~~----~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 82 CVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGG-FAM----PLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred EEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCC-ccc----cccccccceEEEeccchHHHH
Confidence 554432210 11110 11121 2222379999999987642110 000 000111377888887632 2
Q ss_pred HH---HHHHHHHhh--hcCCeeEEEEcCCCCCCc-hhHHHHHHHHhCCCeEEeecCCC
Q 011624 309 QE---AAALVTTFN--IEIGITGAILTKLDGDSR-GGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 309 ~~---~~~~~~~f~--~~~~i~GvIlnKvD~~~~-~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
.. ..+.++.+. .+..+.||+.|. ....+ ......+++.++.++ ++..+.
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r~~~~~~~~~e~l~~~~g~~v--l~~Ip~ 211 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYNG-RSVIDAPDIVEEFAKKIGTNV--IGKIPM 211 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEec-cCCCchhHHHHHHHHHhCCcE--EEECCC
Confidence 22 223333332 245677887553 22222 234456667788887 555543
No 58
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.52 E-value=1.3e-13 Score=129.04 Aligned_cols=160 Identities=22% Similarity=0.318 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---hhh--------hcCCCeecC--CCCCCHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGE--------QVGVPVYTA--GTEVKPS 251 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---~~~--------~~gv~v~~~--~~~~~~~ 251 (481)
|.+.+++||+||||++.+||.+|+++|++|+++|+|++.+...--... ... ...+..... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDP 80 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHH
Confidence 456779999999999999999999999999999999998664221100 000 000000000 0000123
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--H---HHHHHHHHhhhcCCeeE
Q 011624 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAAALVTTFNIEIGITG 326 (481)
Q Consensus 252 ~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~---~~~~~~~~f~~~~~i~G 326 (481)
..+++.++.+....||+||||||+..... +..+.. .++.+++++++... . .....++.+....++.|
T Consensus 81 ~~l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~~~l~--~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 152 (195)
T PF01656_consen 81 ELLREILESLIKSDYDYIIIDTPPGLSDP------VRNALA--AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIG 152 (195)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECSSSSHH------HHHHHH--TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEE
T ss_pred HHHHHHHHHhhhccccceeecccccccHH------HHHHHH--hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEE
Confidence 44667777755445999999999876532 111222 24778888887332 2 22333344443355789
Q ss_pred EEEcCCCCC--CchhH-HHHHHHHhCCCe
Q 011624 327 AILTKLDGD--SRGGA-ALSVKEVSGKPI 352 (481)
Q Consensus 327 vIlnKvD~~--~~~g~-~~~~~~~~glPV 352 (481)
+|+||++.. .+... ........+.|.
T Consensus 153 vv~N~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (195)
T PF01656_consen 153 VVINRVDPGNESKLQEEIEEIERELYVPV 181 (195)
T ss_dssp EEEEEETSCCHHHHHHHHHHHHHHCECCC
T ss_pred EEEeeeCCCccchHHHHHHHHHHHhCCCc
Confidence 999999765 33332 234444444443
No 59
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.51 E-value=1.6e-13 Score=136.58 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HHHHHHh------------hhhcCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVIL------------GEQVGV 239 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------idql~~~------------~~~~gv 239 (481)
++|+++|||||||||++.+||.+|+++|++|++||+|++-... .+-+..- ....|+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l 80 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCCE
Confidence 3688889999999999999999999999999999999885322 1111000 001244
Q ss_pred CeecCCCCC------CHHHH----HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h
Q 011624 240 PVYTAGTEV------KPSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 308 (481)
Q Consensus 240 ~v~~~~~~~------~~~~~----l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~ 308 (481)
.+++.+... ..... +.+.+..+. ++||||||||+|..... .+...+. ....+.+++++.+.. .
T Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~-~~~~~~~----~~aAD~viip~~p~~~s 154 (275)
T TIGR01287 81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCG-GFAMPIR----EGKAQEIYIVTSGEMMA 154 (275)
T ss_pred EEEeCCCCCccCCCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceec-ceeeccc----cccccEEEEEecchHHH
Confidence 444332211 11111 122233443 68999999998754211 1111000 012377788877622 2
Q ss_pred -HH---HHHHHHHhh--hcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCC
Q 011624 309 -QE---AAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 362 (481)
Q Consensus 309 -~~---~~~~~~~f~--~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~ 362 (481)
.. ..+.++.+. ....+.|+|+|+.....+......+.+..+.++ ++..+...
T Consensus 155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~~~ 212 (275)
T TIGR01287 155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQL--IHFVPRSN 212 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCchHHHHHHHHHHHhCCce--EEECCCCh
Confidence 22 222233332 245678899887533322333455666777776 55554433
No 60
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.51 E-value=5.8e-13 Score=149.59 Aligned_cols=148 Identities=26% Similarity=0.356 Sum_probs=100.9
Q ss_pred CCCEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH---------------------HhhhhcC
Q 011624 181 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 238 (481)
Q Consensus 181 ~~~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~---------------------~~~~~~g 238 (481)
.++++|++++. +|+||||++.+||.+|+..|+||++||+|+++|.....+. ......+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 35678888876 8999999999999999999999999999999876432210 0001124
Q ss_pred CCeecCCC-CCCHHHH-----HHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cch-H
Q 011624 239 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTG-Q 309 (481)
Q Consensus 239 v~v~~~~~-~~~~~~~-----l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~-~ 309 (481)
+.+++.+. ..+|.+. +.+.+..++ ..||+|||||||.+.. |...++.. .+.+++|+.+ .+. .
T Consensus 609 l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~~--------ad~~llVvr~~~t~~~ 679 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGRS--------VGTSLLVARFGLNTAK 679 (726)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHHh--------CCeEEEEEeCCCCCHH
Confidence 55555543 3344443 456677765 6899999999998764 44333322 3778899887 333 4
Q ss_pred HHHHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 310 EAAALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 310 ~~~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
.+...++.+. .+..+.|+|+|+++....
T Consensus 680 ~~~~~~~~l~~~~~~~~G~VlN~~~~~~~ 708 (726)
T PRK09841 680 EVSLSMQRLEQAGVNIKGAILNGVIKRAS 708 (726)
T ss_pred HHHHHHHHHHhCCCceEEEEEeCcccCcc
Confidence 4444444442 356789999999986543
No 61
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.51 E-value=6.2e-13 Score=129.69 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-------------HHHH--------HhhhhcCCCeec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV--------ILGEQVGVPVYT 243 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-------------dql~--------~~~~~~gv~v~~ 243 (481)
|.+.+++||+||||++.+||.+|+++|+||++||+|++.+... +.+. .+....|+.+++
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ip 83 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLFLP 83 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEEec
Confidence 4444678999999999999999999999999999999864210 0000 001123455554
Q ss_pred CCCCCC---------HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-hHHHHH
Q 011624 244 AGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAA 313 (481)
Q Consensus 244 ~~~~~~---------~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~~~~~~ 313 (481)
.+.... ....+++.+..+....+|+|||||||.... .... ++. ..+.+++|+.+.. ......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~---~~~~---~l~--~ad~vii~~~~~~~s~~~~~ 155 (246)
T TIGR03371 84 FGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP---ITRQ---ALA--AADLVLVVVNADAACYATLH 155 (246)
T ss_pred CCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH---HHHH---HHH--hCCeEEEEeCCCHHHHHHHH
Confidence 332111 123345566665433469999999996532 1111 111 2377888887732 212222
Q ss_pred -HHHHhhh---cCCeeEEEEcCCCCCCc-hhHHHH-HHHHhCCCe
Q 011624 314 -LVTTFNI---EIGITGAILTKLDGDSR-GGAALS-VKEVSGKPI 352 (481)
Q Consensus 314 -~~~~f~~---~~~i~GvIlnKvD~~~~-~g~~~~-~~~~~glPV 352 (481)
.+..+.. .....++|+|+++.... ...+.. +.+.++.++
T Consensus 156 ~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~~~~~~~~~ 200 (246)
T TIGR03371 156 QQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVLRQTLGSRL 200 (246)
T ss_pred HHHHHHhhcccccccceEEeeccCcchhhHHHHHHHHHHHhcccc
Confidence 2222211 11226799999986543 222333 344556664
No 62
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.51 E-value=1.3e-12 Score=124.87 Aligned_cols=140 Identities=24% Similarity=0.362 Sum_probs=88.2
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHH------------HHH----hh------hhc
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQ------------LVI----LG------EQV 237 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidq------------l~~----~~------~~~ 237 (481)
..++|+++ +++|+||||++.+||.+|++ .|++|++||+|++.+..... +.. +. ...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 34567766 67999999999999999996 69999999999986543111 100 00 012
Q ss_pred CCCeecCCCCCC-H-----HHHHHHHHHHHHcCCC--cEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC-cch
Q 011624 238 GVPVYTAGTEVK-P-----SQIAKQGLEEAKKKNV--DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG 308 (481)
Q Consensus 238 gv~v~~~~~~~~-~-----~~~l~~~l~~~~~~~~--D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda-~~~ 308 (481)
++.+++.+.... + .+.+.+.+..++ ..| ||||||||+..... .... +.. ..+.+++|+.+ .+.
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~--~~~~---l~~--~aD~viiV~~~~~~~ 185 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFS--EARA---LAR--LVGQIVLVVEEGRTT 185 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchh--HHHH---HHH--hCCEEEEEEECCCCC
Confidence 344554443221 1 123456677765 456 99999999887421 1111 111 13788999988 333
Q ss_pred -HHHHHHHHHhhhcCCeeEEEEc
Q 011624 309 -QEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 309 -~~~~~~~~~f~~~~~i~GvIln 330 (481)
..+...+...+ ..++.|+|+|
T Consensus 186 ~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeC
Confidence 34444444444 6789999998
No 63
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.50 E-value=5.8e-13 Score=139.82 Aligned_cols=41 Identities=41% Similarity=0.391 Sum_probs=37.0
Q ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+||+++ .+|||||||++.+||.+|+.+|+||++||+|++.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 3666665 7899999999999999999999999999999985
No 64
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.50 E-value=9.7e-13 Score=140.72 Aligned_cols=218 Identities=20% Similarity=0.302 Sum_probs=129.4
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------------H--HHHHHhhhhcCC-------Cee
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------I--DQLVILGEQVGV-------PVY 242 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------------i--dql~~~~~~~gv-------~v~ 242 (481)
++++|. ++||||++++.|++.|+++|++|. +|+|.. + .++.+ ....++ |+.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~-----~fKp~~~~~~s~~~~~~~e~~~a~~~q-a~a~~~~~~~~~nPv~ 74 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVA-----PFKSQNMSLNSFVTKEGGEIAIAQATQ-ALAAGIEPSVHMNPIL 74 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEE-----EECCcccccCccccCCCchhHHHHHHH-HHhCCCCchhccCCEE
Confidence 356666 999999999999999999999999 666530 1 12111 111111 111
Q ss_pred c-C-----------CCCC---C-----------HHHHHHHHHHHHHcCCCcEEEEcCCCCccc-----cHHHHHHHHhhh
Q 011624 243 T-A-----------GTEV---K-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-----DKAMMDELKDVK 291 (481)
Q Consensus 243 ~-~-----------~~~~---~-----------~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~-----d~~~~~el~~i~ 291 (481)
- . +... . ..+.+++.+.++. .+||+||||++|.+.. +.....++++..
T Consensus 75 lk~~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l 153 (475)
T TIGR00313 75 LKPKGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELA 153 (475)
T ss_pred eCcCCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHh
Confidence 1 0 0000 0 1123455566653 6899999999986532 123345555555
Q ss_pred hccCCceEEEEEeCcchH---HHHHHHHHhhh--cCCeeEEEEcCCCCCCch--hHHHHHHHHhCCCeEEeecCCCCCCC
Q 011624 292 RVLNPTEVLLVVDAMTGQ---EAAALVTTFNI--EIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMEDL 364 (481)
Q Consensus 292 ~~~~p~~vvLVvda~~~~---~~~~~~~~f~~--~~~i~GvIlnKvD~~~~~--g~~~~~~~~~glPV~~ig~g~~v~dl 364 (481)
. .+++||+|...+. .+...+..+.. .+.+.|+|+||++..... ..+..+.+.+|+|+ +|..+...++
T Consensus 154 ~----apVILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~gipv--LG~ip~~~~l 227 (475)
T TIGR00313 154 N----ADAILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELTGIPV--LGVLPYDENL 227 (475)
T ss_pred C----CCEEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhhCCCE--EEEecCCCcC
Confidence 4 7899999985442 22222222233 257899999999864321 22233455579999 8888777654
Q ss_pred CCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCcccc
Q 011624 365 EPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA 444 (481)
Q Consensus 365 ~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~ 444 (481)
+ |+ .| ...+..+ ++ ++ .+ ..+++|
T Consensus 228 --l-~~-------------------~e------~~~~~~~-----~~--------------~~-------~~--~~~~Ia 251 (475)
T TIGR00313 228 --F-PE-------------------ED------SLVIQER-----RS--------------RG-------NA--KSIRIG 251 (475)
T ss_pred --C-Ch-------------------HH------hhhHHhh-----hc--------------cC-------CC--CCcEEE
Confidence 1 11 00 0000000 00 00 01 127899
Q ss_pred ccc-hhhhcchhHHHHHHccChhhhccCCccc
Q 011624 445 QVR-EAEKSLKIMEAMIEAMTPGIFFFSIIII 475 (481)
Q Consensus 445 ~~~-d~a~~f~~~~~li~sm~~e~~~~~~l~~ 475 (481)
+++ |.+|||.|++.| +.. ++++|+|+-+
T Consensus 252 v~~~~~~~nf~~~~~L-~~~--~~~~f~~~~~ 280 (475)
T TIGR00313 252 VVRLPRISNFTDFEPL-RYE--AFVKFLDLDD 280 (475)
T ss_pred EEcCCcccCccChHHH-hhC--CCeEEeCCcc
Confidence 999 999999999999 666 6999999865
No 65
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.4e-13 Score=130.83 Aligned_cols=169 Identities=23% Similarity=0.316 Sum_probs=104.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhh-----h---------cCCCeecCCC--
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----Q---------VGVPVYTAGT-- 246 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~-----~---------~gv~v~~~~~-- 246 (481)
..|++++|+|||||||++.+||.+|++.|++|.++|+|.+.|..-.-+-..++ . .++.++..+.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl 127 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLL 127 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeec
Confidence 35666689999999999999999999999999999999998764221110000 0 1111222111
Q ss_pred --------C--CCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCC-ceEEEEEeC--cchHHHHH
Q 011624 247 --------E--VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA--MTGQEAAA 313 (481)
Q Consensus 247 --------~--~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p-~~vvLVvda--~~~~~~~~ 313 (481)
| .....++++++....|++.||+||||||... |. ++. +...... +..++|.-. ..-+++..
T Consensus 128 ~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGts-De----hls-~~~~~~~~~gAviVTTPQ~vAl~Dv~K 201 (300)
T KOG3022|consen 128 KPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTS-DE----HLS-LVQFLRESDGAVIVTTPQEVALQDVRK 201 (300)
T ss_pred CCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCC-hh----hhh-eeecccccCceEEEeCchhhhhHHHHh
Confidence 1 1112466788888778999999999998864 21 121 2222222 555666322 11133333
Q ss_pred HHHHh-hhcCCeeEEEEcCCCCC-------C---chhHHHHHHHHhCCCeEEeecCC
Q 011624 314 LVTTF-NIEIGITGAILTKLDGD-------S---RGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 314 ~~~~f-~~~~~i~GvIlnKvD~~-------~---~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
.+.-+ ...++|.|+|-|+..-. . ..|....+++..|+|. +|..|
T Consensus 202 ~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~--Lg~iP 256 (300)
T KOG3022|consen 202 EIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPL--LGSLP 256 (300)
T ss_pred hhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCe--EeecC
Confidence 33333 34678999999976421 1 1245577889999999 77764
No 66
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.49 E-value=3.3e-13 Score=136.10 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HHHHHHh---hh---hcCCCe----
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVIL---GE---QVGVPV---- 241 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------idql~~~---~~---~~gv~v---- 241 (481)
++|+|+||||+||||++.+||.+|+++|+||++||+|++.+.. .+-+... .. ..++..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 3677779999999999999999999999999999999865321 1111000 00 000000
Q ss_pred ecCCC-----CC-CH--------HH--HHHHHHHHHH--cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEE
Q 011624 242 YTAGT-----EV-KP--------SQ--IAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (481)
Q Consensus 242 ~~~~~-----~~-~~--------~~--~l~~~l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVv 303 (481)
.+... .. .+ .. ..+..++.+. ..+||||||||+|..... .....+... ..+.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~-g~~~~~a~~----~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCG-GFATPLARS----LAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCcccc-ccccchhhh----hCCeEEEEe
Confidence 00000 00 00 01 1134444432 147999999997754100 000011101 137778887
Q ss_pred eCc-ch----HHHHHHHHHhh---hcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 304 DAM-TG----QEAAALVTTFN---IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 304 da~-~~----~~~~~~~~~f~---~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
.+. .. ......++.+. ..+++.|+|+|+.+.. +....+++..++|+ ++..|....
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~---~~~~~~~~~~~i~v--Lg~IP~d~~ 218 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS---GEAQAFAREVGIPV--LAAIPADEE 218 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc---cHHHHHHHHcCCCe--EEECCCCHH
Confidence 762 22 22333333333 2467899999999763 24466788899999 777654433
No 67
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.49 E-value=9e-14 Score=141.44 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=100.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH-----------Hh----hh----------
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------IL----GE---------- 235 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~-----------~~----~~---------- 235 (481)
++.++|+++|++|+||||++++||.+|+++|++|++||+|++++.....+. .. .+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~ 108 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFK 108 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEE
Confidence 467899999999999999999999999999999999999998643211100 00 00
Q ss_pred hcCCCeecCCC---CCCH----HHHHHHHHHHH---HcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEE
Q 011624 236 QVGVPVYTAGT---EVKP----SQIAKQGLEEA---KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLV 302 (481)
Q Consensus 236 ~~gv~v~~~~~---~~~~----~~~l~~~l~~~---~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLV 302 (481)
..|+.+...+. +..+ .....+.++.+ .| +||||||||+|.... ....... ..+.+++|
T Consensus 109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~~--------~ad~VIVV 179 (329)
T cd02033 109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIARD--------MAQKVIVV 179 (329)
T ss_pred eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhhc--------CCceEEEe
Confidence 01222222221 1111 11122445543 33 799999999886531 1111111 12566666
Q ss_pred EeCcc-h-HH---HH---HHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 303 VDAMT-G-QE---AA---ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 303 vda~~-~-~~---~~---~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
..... . .. +. ..++.....+++.|+|+||.|+. +.+..+++..++|+ ++..|..++
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~---~~ie~~ae~lgi~v--Lg~IP~D~~ 243 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT---GEAQAFAAHAGIPI--LAAIPADEE 243 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc---chHHHHHHHhCCCE--EEECCCCHH
Confidence 65421 1 11 12 22222233467899999999863 24667788899999 887765544
No 68
>PRK11519 tyrosine kinase; Provisional
Probab=99.49 E-value=1.2e-12 Score=147.01 Aligned_cols=146 Identities=23% Similarity=0.326 Sum_probs=99.2
Q ss_pred CCCEEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH---------------------HhhhhcC
Q 011624 181 SRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 238 (481)
Q Consensus 181 ~~~~VI~i~G-~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~---------------------~~~~~~g 238 (481)
.++++|++++ .+|+||||++.+||..|+..|+||++||+|+.+|.....+. ......+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3567888887 59999999999999999999999999999998875322110 0111235
Q ss_pred CCeecCCC-CCCHHHH-----HHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cchHH
Q 011624 239 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTGQE 310 (481)
Q Consensus 239 v~v~~~~~-~~~~~~~-----l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~~~ 310 (481)
+.+++.+. ..+|.+. +.+.++.++ ..||+|||||||.+.. |...++.. .|.+++|+.+ .+..+
T Consensus 604 l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l~~~--------~d~~l~Vvr~~~t~~~ 674 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGRH--------VGTTLMVARYAVNTLK 674 (719)
T ss_pred EEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHHHHH--------CCeEEEEEeCCCCCHH
Confidence 55665543 3345443 356667765 7899999999998754 43333332 3788999887 44433
Q ss_pred HH-HHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 311 AA-ALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 311 ~~-~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
.+ ..++.+. ...++.|+|+|+++..
T Consensus 675 ~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 675 EVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 33 3333332 3578899999999744
No 69
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.46 E-value=2.7e-12 Score=125.99 Aligned_cols=166 Identities=22% Similarity=0.321 Sum_probs=97.5
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH--------------HHHHH---------H-hhhhcC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--------------IDQLV---------I-LGEQVG 238 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a--------------idql~---------~-~~~~~g 238 (481)
++|++ +++||+||||++.+||.+|+++|++|++||+|++.+.. .+.+. . .....+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 45655 57899999999999999999999999999999963211 11110 0 001124
Q ss_pred CCeecCCCCCC----HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHH
Q 011624 239 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 312 (481)
Q Consensus 239 v~v~~~~~~~~----~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~ 312 (481)
+.+++.+.... ..+.+.+.+..+. +.||+|||||||.... .....+ . ..+.+++|+.+... ..+.
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~l----~--~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNAV----A--PADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHHH----H--hCCeEEEEcCCCcHHHHHHH
Confidence 44554432211 1234566777765 6899999999987642 122221 1 23778888877322 2222
Q ss_pred HHHHHhhh-cCCeeEEEEcCCCCCCch-h---HHHHHHHHhCCCeEEeecCCC
Q 011624 313 ALVTTFNI-EIGITGAILTKLDGDSRG-G---AALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 313 ~~~~~f~~-~~~i~GvIlnKvD~~~~~-g---~~~~~~~~~glPV~~ig~g~~ 360 (481)
..++.+.. .....++++|+++..... . .+..+.+..+.|+ ++..+.
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 203 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPL--IGVIPE 203 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCce--eEEccC
Confidence 22222211 123468999999853211 1 2345666778887 555543
No 70
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.46 E-value=7.2e-13 Score=131.16 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-----------HHHHHh----------hhhcCCCee
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVIL----------GEQVGVPVY 242 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-----------dql~~~----------~~~~gv~v~ 242 (481)
++|+++|+|||||||++.+||.+|+++| +|++||+|++..... +-+... ....++.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 81 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGILCV 81 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeEEE
Confidence 5677779999999999999999999999 999999999853221 111000 001133333
Q ss_pred cCCCCC------CHHH----HHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-chH-H
Q 011624 243 TAGTEV------KPSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQ-E 310 (481)
Q Consensus 243 ~~~~~~------~~~~----~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~~-~ 310 (481)
+.+... .... .+.+.+..+ .++||||||||+|...... +...+. ....+.+++++.+. ... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~-~~~~~~----~~aaD~vlip~~p~~~si~~ 155 (264)
T PRK13231 82 ESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGG-FSVPLR----EDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred EcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEcc-cccccc----ccccceeEEEecCchhHHHH
Confidence 332110 1110 122334444 3689999999987653211 110100 01237778887762 222 2
Q ss_pred H---HHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 311 A---AALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 311 ~---~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
+ .+.++.++ ..+.|+|.|+.+...+...+....+.++.++ ++..+
T Consensus 156 ~~~~~~~i~~~~--~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v--l~~I~ 203 (264)
T PRK13231 156 ANNIARGIKKLK--GKLGGIICNCRGIDNEVEIVSEFASRIGSRI--IGVIP 203 (264)
T ss_pred HHHHHHHHHHcC--CcceEEEEcCCCCccHHHHHHHHHHHhCCCe--EEeCC
Confidence 2 22233332 2357888888775444444566667778877 44443
No 71
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.45 E-value=2.6e-12 Score=127.53 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=97.9
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH--------------HHHH--------Hh-h-hhcC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI--------------DQLV--------IL-G-EQVG 238 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai--------------dql~--------~~-~-~~~g 238 (481)
++|++ +++|||||||++++||.+|+++|++|++||+|++.++.. +.+. .+ . ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 45555 578999999999999999999999999999999743311 1000 00 0 1124
Q ss_pred CCeecCCCCCCH----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HHH-
Q 011624 239 VPVYTAGTEVKP----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEA- 311 (481)
Q Consensus 239 v~v~~~~~~~~~----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~- 311 (481)
+.+++.+..... .+...+.++.++...||+|||||||.+.. .....+ . ..+.+++|+++.. . ..+
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~--~~~~~l----~--~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMAL----Y--FADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccH--HHHHHH----H--hCCeEEEEcCCCchHHHhHH
Confidence 444444322111 11234566666534799999999988742 122222 1 2378888888742 2 222
Q ss_pred --HHHHHHhh-----hcCCe-eEEEEcCCCCCCch----hHHHHHHHHhCCCeEEeecCCCC
Q 011624 312 --AALVTTFN-----IEIGI-TGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 312 --~~~~~~f~-----~~~~i-~GvIlnKvD~~~~~----g~~~~~~~~~glPV~~ig~g~~v 361 (481)
.+.+..+. ...++ .++|+|+++..... .....+.+..|.++ ++..+..
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip~~ 214 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPED 214 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcE--EEEecCC
Confidence 22222211 11222 48999999865321 12355666778886 5555443
No 72
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.44 E-value=4.2e-12 Score=132.76 Aligned_cols=43 Identities=33% Similarity=0.359 Sum_probs=37.9
Q ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++++||+++ .+|||||||++.+||.+|+++|+||++||+|++.
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 344677664 7899999999999999999999999999999985
No 73
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.43 E-value=2e-12 Score=146.20 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=96.0
Q ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH---------------------HhhhhcC
Q 011624 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 238 (481)
Q Consensus 181 ~~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~---------------------~~~~~~g 238 (481)
.++++|+|+ +++|+||||++.+||..|++.|++|+|||+|+++|.....+. ......+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 356788876 559999999999999999999999999999999875432221 0011234
Q ss_pred CCeecCCCC-CCHHHH-----HHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cch-H
Q 011624 239 VPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTG-Q 309 (481)
Q Consensus 239 v~v~~~~~~-~~~~~~-----l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~-~ 309 (481)
+.+++.+.. ..+.+. +.+.+..++ +.||+|||||||.... +...+ .. ..|.+++|+.+ .+. .
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l------~~--~~D~vl~v~~~~~~~~~ 694 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA------AR--LAIIMLLVTAYDRVVVE 694 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh------hh--hCCeEEEEEEeCceeHH
Confidence 556655532 233332 356677765 7899999999998752 22211 11 13778888876 233 2
Q ss_pred HHHHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 310 EAAALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 310 ~~~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
...+.++.+. .+.++.|+|+|++|...+
T Consensus 695 ~~~~~~~~l~~~~~~~~GvvlN~~~~~~~ 723 (754)
T TIGR01005 695 CGRADAQGISRLNGEVTGVFLNMLDPNDE 723 (754)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCChhhh
Confidence 3333333222 235678999999996544
No 74
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.42 E-value=3.1e-12 Score=123.25 Aligned_cols=148 Identities=24% Similarity=0.274 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch-------hHHHHHH---------Hhhhhc-----------
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQLV---------ILGEQV----------- 237 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp-------~aidql~---------~~~~~~----------- 237 (481)
+++++|++|+||||++++||.+++++|++|++||+|+.++ +..+-+. .+....
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4678999999999999999999999999999999999882 2211110 010000
Q ss_pred --CCCee-cCCCCCCHHHHH--HHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-ch-HH
Q 011624 238 --GVPVY-TAGTEVKPSQIA--KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 310 (481)
Q Consensus 238 --gv~v~-~~~~~~~~~~~l--~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~-~~ 310 (481)
+..+. ......++.+.+ .+.++.++..+||+||||||+..+....++ .........+.+++|+.+. +. .+
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~---~~~l~~~~~~~vllV~~p~~~s~~~ 157 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLV---RELLTDPERTSFRLVTLPEKLPLYE 157 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHH---HHHccCCCceEEEEEeCCCccHHHH
Confidence 11111 111233444433 345555543349999999998643211111 1111111126788888873 33 33
Q ss_pred HHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 311 AAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
+...++.+. .+.++.|+|+|++...
T Consensus 158 ~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 158 TERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 334343332 2356789999998643
No 75
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.42 E-value=9.2e-12 Score=122.91 Aligned_cols=40 Identities=45% Similarity=0.574 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++++++|+||+||||+++++|.+++++|++|++||+|+..
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 3788999999999999999999999999999999999853
No 76
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.41 E-value=3.5e-12 Score=133.06 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEec-cCCc
Q 011624 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 223 (481)
Q Consensus 181 ~~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~-D~~r 223 (481)
.+++||+++ .||||||||++.+||.+|+.+|+||++||+ |+|.
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~ 148 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG 148 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 346777765 789999999999999999999999999996 9975
No 77
>PRK10037 cell division protein; Provisional
Probab=99.41 E-value=6.7e-12 Score=123.42 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-------------HHHH---H-----hhhhcCCCeec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV---I-----LGEQVGVPVYT 243 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-------------dql~---~-----~~~~~gv~v~~ 243 (481)
|.+...+|||||||++.+||..|+++|+||++||+|++..... +.+. . +....|+.+++
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iip 83 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDLLP 83 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEEEc
Confidence 3444688999999999999999999999999999999853210 0000 0 00012444554
Q ss_pred CCCCCCHH------------HHHHHHHHHHHc-CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH
Q 011624 244 AGTEVKPS------------QIAKQGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE 310 (481)
Q Consensus 244 ~~~~~~~~------------~~l~~~l~~~~~-~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~ 310 (481)
.+. .... ..+.+.+..++. .+||||||||||.... .....+ . ..+.+++++.+.. .+
T Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~--~~~~al----~--aaD~vlvpv~~~~-~~ 153 (250)
T PRK10037 84 FGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP--LTRQLL----S--LCDHSLAIVNVDA-NC 153 (250)
T ss_pred CCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH--HHHHHH----H--hCCEEEEEcCcCH-HH
Confidence 431 2111 123455555531 5799999999998642 121211 1 2377888887642 22
Q ss_pred HHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 311 AAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 311 ~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..+..+.+. ..+ ..+++|+++...
T Consensus 154 ~i~~~~~~~-~~~-~~i~~n~~~~~~ 177 (250)
T PRK10037 154 HIRLHQQAL-PAG-AHILINDLRIGS 177 (250)
T ss_pred HHhhhcccc-CCC-eEEEEecCCccc
Confidence 333333221 122 357789987433
No 78
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=3.8e-11 Score=122.37 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=94.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch---hHH--HH--HHHhhhhcCCCeecCCC--CC-CH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAI--DQ--LVILGEQVGVPVYTAGT--EV-KP 250 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp---~ai--dq--l~~~~~~~gv~v~~~~~--~~-~~ 250 (481)
+++.+|.++|++|+||||++..|+..|..+|++|.+++.|+..+ +++ |. +..+....++-+..... .. ..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 35789999999999999999999999999999999999999654 222 21 22223333333333222 11 24
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEc
Q 011624 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 251 ~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIln 330 (481)
...+.+++..+...+||+|||||+|..+..... .+ ..|-+++|++...+.+........-+-. .-+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i-~~--------~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETAV-AG--------MVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhHH-HH--------hCCEEEEEecCCchHHHHHHHhhhhhhh--heEEee
Confidence 566677777776678999999999987543221 11 1366777776555654433222111111 248999
Q ss_pred CCCCCCc
Q 011624 331 KLDGDSR 337 (481)
Q Consensus 331 KvD~~~~ 337 (481)
|.|....
T Consensus 203 KaDl~~~ 209 (332)
T PRK09435 203 KADGDNK 209 (332)
T ss_pred hhcccch
Confidence 9996543
No 79
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.39 E-value=1.4e-11 Score=118.38 Aligned_cols=90 Identities=29% Similarity=0.406 Sum_probs=65.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcC-----CCeecCCCCCCHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG-----VPVYTAGTEVKPSQIAKQG 257 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~g-----v~v~~~~~~~~~~~~l~~~ 257 (481)
|.|.+.+.|||+||||++..||..|+++|.+|.+||+||.||-..+ ...+...| +.++.. +....+.+.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W--~~~a~~~~~~~~~~~V~~~----~e~~~l~~~ 75 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW--AENAQRPGAWPDRIEVYEA----DELTILEDA 75 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH--HHhccccCCCCCCeeEEec----cchhhHHHH
Confidence 4455667899999999999999999999999999999999987632 23332222 233322 223345566
Q ss_pred HHHHHcCCCcEEEEcCCCCcc
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~ 278 (481)
++.+....||+||||+.|..+
T Consensus 76 ~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCc
Confidence 666654579999999998764
No 80
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.39 E-value=1.3e-11 Score=125.79 Aligned_cols=164 Identities=25% Similarity=0.298 Sum_probs=96.8
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-----H--------HHHH-------------hh
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----D--------QLVI-------------LG 234 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-----d--------ql~~-------------~~ 234 (481)
+.++|.++ ++||+||||++++||.+|+++|++|++||+|++.++.. + .+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 35667665 67999999999999999999999999999999865320 0 0000 00
Q ss_pred hhcCCCeecCCCCC---CHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--H
Q 011624 235 EQVGVPVYTAGTEV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (481)
Q Consensus 235 ~~~gv~v~~~~~~~---~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~ 309 (481)
...|+.++..+... ...+.++..++.++ +.|||||||||+.... .... ++. ..+.+++|+++... .
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~--~~~~----~L~--~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTP--AAET----ALE--SADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCH--HHHH----HHH--HCCEEEEEcCCcHHHHH
Confidence 11244444433211 12345667777764 7899999999988642 1111 112 23778888877322 2
Q ss_pred HHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecC
Q 011624 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 358 (481)
Q Consensus 310 ~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g 358 (481)
.+.+.++.+...-.-..+|+|+.... .-....+.+.+|.|+ ++..
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~~--~~~~~~i~~~lg~~v--~~~I 287 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAPA--GLDPEEIAESLGLPL--LGEV 287 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCC--CCCHHHHHHHhCCCc--eeeC
Confidence 33333333322111235677764321 112356677788888 4444
No 81
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.38 E-value=1e-11 Score=125.46 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=91.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH---H--HH--HHHhhhhcCCCeecCCCC---CCH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I--DQ--LVILGEQVGVPVYTAGTE---VKP 250 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a---i--dq--l~~~~~~~gv~v~~~~~~---~~~ 250 (481)
.++.++.++|++|+||||++.+|+..+.++|++|.++++|++.+.. + +. +.......++.+...... ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 3578999999999999999999999999999999999999887542 1 11 111112233333333221 122
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEc
Q 011624 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 251 ~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIln 330 (481)
.....+.+..+...+||+|||||+|..+...... .. .+.+++|.....+.+.......+... ..-+++|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~-------~~--aD~i~vv~~~~~~~el~~~~~~l~~~--~~ivv~N 180 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDIA-------NM--ADTFVVVTIPGTGDDLQGIKAGLMEI--ADIYVVN 180 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHH-------Hh--hceEEEEecCCccHHHHHHHHHHhhh--ccEEEEE
Confidence 2334556666665799999999999765332211 11 25555555555555544333333221 2358999
Q ss_pred CCCCCCc
Q 011624 331 KLDGDSR 337 (481)
Q Consensus 331 KvD~~~~ 337 (481)
|+|....
T Consensus 181 K~Dl~~~ 187 (300)
T TIGR00750 181 KADGEGA 187 (300)
T ss_pred cccccch
Confidence 9997543
No 82
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.37 E-value=6.2e-12 Score=131.33 Aligned_cols=43 Identities=42% Similarity=0.422 Sum_probs=38.0
Q ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEec-cCCc
Q 011624 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 223 (481)
Q Consensus 181 ~~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~-D~~r 223 (481)
.+++||.++ .+|||||||++.+||.+|+++|+||++||+ |+|.
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~ 148 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG 148 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC
Confidence 346777765 789999999999999999999999999997 9975
No 83
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.35 E-value=1.2e-11 Score=111.00 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
|.+.++++|+||||++.++|.+++.+|++|+++|+|++.+..-
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------- 44 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------- 44 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC-------------------------------------
Confidence 3445689999999999999999999999999999998754321
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhh--cCCeeEEEEcCCCCCCchhH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGDSRGGA 340 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~ 340 (481)
||+||||||+..... ... +... .+.+++|+++... .+....++.... .....++|+|+++.......
T Consensus 45 -yd~VIiD~p~~~~~~--~~~----~l~~--aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~ 115 (139)
T cd02038 45 -YDYIIIDTGAGISDN--VLD----FFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKK 115 (139)
T ss_pred -CCEEEEECCCCCCHH--HHH----HHHh--CCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHH
Confidence 899999999875422 111 1221 2778888887422 233333333321 23346799999986544433
Q ss_pred H
Q 011624 341 A 341 (481)
Q Consensus 341 ~ 341 (481)
.
T Consensus 116 ~ 116 (139)
T cd02038 116 V 116 (139)
T ss_pred H
Confidence 3
No 84
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.35 E-value=5.9e-11 Score=116.94 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=95.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh---HH--HH--HHHhhhhcCCCeecCCCCCC---H
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---AI--DQ--LVILGEQVGVPVYTAGTEVK---P 250 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~---ai--dq--l~~~~~~~gv~v~~~~~~~~---~ 250 (481)
+++.+|.++|.||+||||++-+|...|.++|++|.++..||-.|- ++ |. +..+....|+.+.+..+... -
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 457899999999999999999999999999999999999986543 21 22 22333345666666544222 2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEc
Q 011624 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 251 ~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIln 330 (481)
....++++.-+...+||+|||+|.|..+.+.....- .|.+++|+-+..|.+....-....+-. +-+++|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~---------aDt~~~v~~pg~GD~~Q~iK~GimEia--Di~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANM---------ADTFLVVMIPGAGDDLQGIKAGIMEIA--DIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhh---------cceEEEEecCCCCcHHHHHHhhhhhhh--heeeEe
Confidence 334456666666789999999999998755443322 155566665666644433222222111 348999
Q ss_pred CCCC
Q 011624 331 KLDG 334 (481)
Q Consensus 331 KvD~ 334 (481)
|.|.
T Consensus 198 KaD~ 201 (323)
T COG1703 198 KADR 201 (323)
T ss_pred ccCh
Confidence 9993
No 85
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.35 E-value=2.8e-11 Score=119.61 Aligned_cols=145 Identities=21% Similarity=0.358 Sum_probs=87.1
Q ss_pred EEEEE-EcCCCCCHHHHHHHHH-HHHHHcCCeEEEEeccCCchh-------------HHH---------HHHHhhhhcCC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPA-------------AID---------QLVILGEQVGV 239 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA-~~L~~~G~kVlLId~D~~rp~-------------aid---------ql~~~~~~~gv 239 (481)
++|.+ +|+||+||||++++|+ ..++.+|++|+++|+|+.-+. ..+ +...+....|+
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl 82 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGL 82 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCE
Confidence 45555 6999999999999994 555566788899999986322 111 22122222566
Q ss_pred CeecCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC--cchHHHH
Q 011624 240 PVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEAA 312 (481)
Q Consensus 240 ~v~~~~~~~~~-----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda--~~~~~~~ 312 (481)
.+++.+..... .+.....++.+. ..+|||||||++.++.+. +.. +. ..+.+++|... ..-.++.
T Consensus 83 ~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--~~~---~~---~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 83 YVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--LSF---IL---SSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred EEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--HHH---HH---hcCcEEEEeCCCcchHHHHH
Confidence 66665542211 122345566664 567999999998875332 222 11 12677888766 2234555
Q ss_pred HHHHHh-hhcCCeeE--EEEcCCCCCCc
Q 011624 313 ALVTTF-NIEIGITG--AILTKLDGDSR 337 (481)
Q Consensus 313 ~~~~~f-~~~~~i~G--vIlnKvD~~~~ 337 (481)
...+-. .......+ +|+|++++...
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccc
Confidence 544322 22344556 99999985444
No 86
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.34 E-value=1.6e-11 Score=111.45 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH-------HHhhhhcCCCeecCCC---CCCHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VILGEQVGVPVYTAGT---EVKPSQIA 254 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql-------~~~~~~~gv~v~~~~~---~~~~~~~l 254 (481)
++.+.|++|+||||++.+++.++.++|.+|+++++|+..+.....+ .......++.+..... ...+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 3678899999999999999999999999999999998654321111 0111111222222211 11122334
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHH--HhhhcCCeeEEEEcCC
Q 011624 255 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT--TFNIEIGITGAILTKL 332 (481)
Q Consensus 255 ~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~--~f~~~~~i~GvIlnKv 332 (481)
.+.++.++..+||+|||||+|..+.. .. +.. ..+.+++|+.+.. .++....+ .|. . -.-+++||+
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~---~~----~~~--~Ad~~ivv~tpe~-~D~y~~~k~~~~~-~--~~~~~~~k~ 147 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSE---VD----IAS--MADTTVVVMAPGA-GDDIQAIKAGIME-I--ADIVVVNKA 147 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhh---hh----HHH--hCCEEEEEECCCc-hhHHHHhhhhHhh-h--cCEEEEeCC
Confidence 45555554468999999998875321 11 111 1266777776642 23333333 232 1 245899998
Q ss_pred C
Q 011624 333 D 333 (481)
Q Consensus 333 D 333 (481)
|
T Consensus 148 ~ 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
Confidence 7
No 87
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.32 E-value=2e-11 Score=120.44 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=35.4
Q ss_pred CEEEEE-EcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCc
Q 011624 183 PTVILL-AGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i-~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~r 223 (481)
+.+|.+ .-+|||||||++.+||.+|+ .+|+||++||+||+.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~ 44 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG 44 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 345655 57799999999999999999 566999999999985
No 88
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.29 E-value=5.7e-12 Score=122.52 Aligned_cols=139 Identities=25% Similarity=0.328 Sum_probs=84.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh---HH--H--HHHHhhhhcCCCeecCCCCCCHHH--
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---AI--D--QLVILGEQVGVPVYTAGTEVKPSQ-- 252 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~---ai--d--ql~~~~~~~gv~v~~~~~~~~~~~-- 252 (481)
+..+|.++|+||+||||++..|+..|.++|++|.+++.||-.|- ++ | .+..+....|+.+.+..+......
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56799999999999999999999999999999999999986542 21 1 122444556777776655433333
Q ss_pred -HHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhhcCCeeEEE
Q 011624 253 -IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEIGITGAI 328 (481)
Q Consensus 253 -~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~~~~i~GvI 328 (481)
...+++.-+...+||+|||+|.|..+.+... ... .|.+++|+.+..|.+.. +-+-++. +-+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I-------~~~--aD~~v~v~~Pg~GD~iQ~~KaGimEia-----Di~v 173 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI-------ADM--ADTVVLVLVPGLGDEIQAIKAGIMEIA-----DIFV 173 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH-------HTT--SSEEEEEEESSTCCCCCTB-TTHHHH------SEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH-------HHh--cCeEEEEecCCCccHHHHHhhhhhhhc-----cEEE
Confidence 3355566666679999999999988733222 111 26778887776553321 1112221 3489
Q ss_pred EcCCCC
Q 011624 329 LTKLDG 334 (481)
Q Consensus 329 lnKvD~ 334 (481)
+||.|.
T Consensus 174 VNKaD~ 179 (266)
T PF03308_consen 174 VNKADR 179 (266)
T ss_dssp EE--SH
T ss_pred EeCCCh
Confidence 999993
No 89
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.28 E-value=2.2e-11 Score=118.72 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc------------hhHHHHHHHhhh-------------hcC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLVILGE-------------QVG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r------------p~aidql~~~~~-------------~~g 238 (481)
+-|++.|++|.||||+++||+++|+++|+||++|-|||-. |...+.++..+. ..|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 3589999999999999999999999999999999999852 223444443332 124
Q ss_pred CCeecCCCCC----CHHHH---HHHHHHHHH--cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC-cch
Q 011624 239 VPVYTAGTEV----KPSQI---AKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG 308 (481)
Q Consensus 239 v~v~~~~~~~----~~~~~---l~~~l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda-~~~ 308 (481)
+.+...+.+. ....- ..+.+++.. ..++|+|+.|..|..--. .+..-+ +.-..+++++|.+. .+.
T Consensus 81 i~CvEsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCG-GFamPi----r~g~a~evyIVtSge~ms 155 (273)
T PF00142_consen 81 ILCVESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCG-GFAMPI----REGYAQEVYIVTSGEFMS 155 (273)
T ss_dssp EEEEE---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCT-TTTHHH----HTTS-SEEEEEEBSSHHH
T ss_pred ceeeccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEe-eeehhh----hhccCCEEEEEecCcHHH
Confidence 4455443221 11122 234444432 245899999987654110 111112 11223788888877 333
Q ss_pred -HHH---HHHHHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 309 -QEA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 309 -~~~---~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
..+ ..-++.|.. ..++.|+|+|..+.......+..+++..|.|| ++..|+.+.
T Consensus 156 lyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i--~~~iPr~~~ 214 (273)
T PF00142_consen 156 LYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPI--IAFIPRSEI 214 (273)
T ss_dssp HHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEE--EEEE---HH
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcE--EEecCchHH
Confidence 222 333456643 35689999998876666777788999999999 777766654
No 90
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.28 E-value=5.5e-11 Score=101.73 Aligned_cols=73 Identities=30% Similarity=0.383 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
|.+++++||+||||++.+||.++++. |++|+++|+|++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 34456889999999999999999998 999999999998654
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~ 306 (481)
|+|||||||..... .. . +.. ..+.+++|+++.
T Consensus 44 ---D~IIiDtpp~~~~~--~~-~---~l~--~aD~vlvvv~~~ 75 (106)
T cd03111 44 ---DYVVVDLGRSLDEV--SL-A---ALD--QADRVFLVTQQD 75 (106)
T ss_pred ---CEEEEeCCCCcCHH--HH-H---HHH--HcCeEEEEecCC
Confidence 89999999986421 11 1 122 137788888873
No 91
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.26 E-value=7.2e-11 Score=99.99 Aligned_cols=94 Identities=28% Similarity=0.331 Sum_probs=66.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
.+...+||+||||++.+||.+++++|.+|+++|+|++
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~------------------------------------------- 39 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ------------------------------------------- 39 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-------------------------------------------
Confidence 3445679999999999999999999999999999987
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHH------HHHhhhcCCeeEEEEc
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL------VTTFNIEIGITGAILT 330 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~------~~~f~~~~~i~GvIln 330 (481)
||+||||+||..... .. .+... .+.+++++++... ....+. .+.+.....+.|+|+|
T Consensus 40 ~d~viiD~p~~~~~~--~~----~~l~~--ad~viv~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TR----NALAA--ADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred CCEEEEeCcCCCCHH--HH----HHHHH--CCEEEEeccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 899999999986421 11 12221 3778888887322 222222 2233445667788876
No 92
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.26 E-value=1.3e-10 Score=113.15 Aligned_cols=142 Identities=23% Similarity=0.205 Sum_probs=86.0
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc-------------hhHH------HHH--HHhhhhcCCCee
Q 011624 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-------------PAAI------DQL--VILGEQVGVPVY 242 (481)
Q Consensus 185 VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r-------------p~ai------dql--~~~~~~~gv~v~ 242 (481)
+|++.|. ||+||||++++||..|++.|++|++||+||+. .+.. ..+ ..+....|+.++
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~L 82 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFL 82 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEE
Confidence 5666655 99999999999999999999999999999852 1110 011 122334577777
Q ss_pred cCCCCCCH-----------HHHHHHHHHHHH-cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH
Q 011624 243 TAGTEVKP-----------SQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE 310 (481)
Q Consensus 243 ~~~~~~~~-----------~~~l~~~l~~~~-~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~ 310 (481)
+.+.-... ...+.+.+..+. ...+|+||||||+.... ...+ .... .+.++.|+.+-.. .
T Consensus 83 PfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~---~~~~---al~~--aD~vL~V~~~Da~-s 153 (243)
T PF06564_consen 83 PFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSP---YTRQ---ALAA--ADLVLVVVNPDAA-S 153 (243)
T ss_pred cCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcH---HHHH---HHHh--CCeEEEEeCCCHH-H
Confidence 66532111 122345566665 46799999999987542 2222 1111 2667777766332 1
Q ss_pred HHHHHH-HhhhcCCeeEEEEcCCCCCCch
Q 011624 311 AAALVT-TFNIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 311 ~~~~~~-~f~~~~~i~GvIlnKvD~~~~~ 338 (481)
....-+ .+.. -..+++|++|..+..
T Consensus 154 ~~~L~q~~l~~---~~~~liNq~~~~s~l 179 (243)
T PF06564_consen 154 HARLHQRALPA---GHRFLINQYDPASQL 179 (243)
T ss_pred HHHHHHhcccC---CcEEEEeccCccchH
Confidence 112111 1221 247899999977664
No 93
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.26 E-value=1e-11 Score=119.97 Aligned_cols=93 Identities=24% Similarity=0.373 Sum_probs=52.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH---HHHHHHhhhhcCCCeecC-----CC-----CCC-H
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---IDQLVILGEQVGVPVYTA-----GT-----EVK-P 250 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a---idql~~~~~~~gv~v~~~-----~~-----~~~-~ 250 (481)
|++.+||||+||||++.+||.+|+++|++|.++|+|.+.|.. .+.-..+....++++-.. .. ... +
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~~ 82 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGEN 82 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-HH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCcc
Confidence 444569999999999999999999999999999999987543 222222222233322111 00 111 1
Q ss_pred H--HHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 011624 251 S--QIAKQGLEEAKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 251 ~--~~l~~~l~~~~~~~~D~VIIDt~G~~~ 278 (481)
. ..+.+++..+. .++||+||||||...
T Consensus 83 ~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 83 VEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred hhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 1 24556677764 689999999998743
No 94
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.23 E-value=2.4e-10 Score=110.24 Aligned_cols=170 Identities=18% Similarity=0.283 Sum_probs=97.4
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---ccCCchhHHHHHHHhhhhcCCCee-------cCCC--------
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA---GDVYRPAAIDQLVILGEQVGVPVY-------TAGT-------- 246 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId---~D~~rp~aidql~~~~~~~gv~v~-------~~~~-------- 246 (481)
++++|. +|+|||++++.|+.+|+++|++|.+.- ........-.....+....+++.. ....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 455555 999999999999999999999998432 011100000012223333332210 0011
Q ss_pred -----CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHH
Q 011624 247 -----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT 316 (481)
Q Consensus 247 -----~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~ 316 (481)
..+. +.+.+.++.+. ++||+|||||+|.... ......++..... .++++|+++..+ .++...++
T Consensus 82 ~~~~~~~~~-~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~----~pvilV~~~~~~~i~~~~~~i~ 155 (222)
T PRK00090 82 ALEGVAIDL-EKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ----LPVILVVGVKLGCINHTLLTLE 155 (222)
T ss_pred HHhCCCCCH-HHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC----CCEEEEECCCCcHHHHHHHHHH
Confidence 1112 23445566554 7899999999987532 1123344433333 788999987443 12222222
Q ss_pred Hh-hhcCCeeEEEEcCCCCC-Cc-h-hHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 317 TF-NIEIGITGAILTKLDGD-SR-G-GAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 317 ~f-~~~~~i~GvIlnKvD~~-~~-~-g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
.+ ...+.+.|+|+|+++.. .. . .....+.+.+++|+ +|..|+.++
T Consensus 156 ~l~~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~v--lg~ip~~~~ 204 (222)
T PRK00090 156 AIRARGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPL--LGELPYLAE 204 (222)
T ss_pred HHHHCCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCe--EEecCCCCC
Confidence 22 23567899999999865 22 2 23345666789999 888887643
No 95
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2e-10 Score=109.12 Aligned_cols=174 Identities=25% Similarity=0.293 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc------------hhHHHHHHHhhh--h-----------cC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLVILGE--Q-----------VG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r------------p~aidql~~~~~--~-----------~g 238 (481)
+-|++.|++|-|||||+.|++++|++.|+||++|-|||-. |...|.++.... . -|
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 3688999999999999999999999999999999999852 334455443332 1 13
Q ss_pred CCeecCCCCC-----CHHHH--HHHHHHHHHc--CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC-cch
Q 011624 239 VPVYTAGTEV-----KPSQI--AKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG 308 (481)
Q Consensus 239 v~v~~~~~~~-----~~~~~--l~~~l~~~~~--~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda-~~~ 308 (481)
+.+...+.+. ....+ ..+.++++.. ...|+|+.|..|..- ..-.+.-++.-..+++++|.+. .+.
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVV-----CGGFAmPiReg~AdeiyIVtSge~Ma 156 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVV-----CGGFAMPIREGYADEIYIVTSGEMMA 156 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCcee-----ecceeeehhcccCcEEEEEecCchHH
Confidence 4444433211 11111 2344444421 345999999987641 1111111222234788999887 333
Q ss_pred -HHHHHH---HHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCC
Q 011624 309 -QEAAAL---VTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDL 364 (481)
Q Consensus 309 -~~~~~~---~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl 364 (481)
..+-++ ++.|.. .+++.|+|.|.-........+..+++..|.|+ +...|+.+.+
T Consensus 157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~l--i~~vPr~~iv 216 (278)
T COG1348 157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQL--IHFVPRDNIV 216 (278)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCce--EeeccchHHH
Confidence 333333 355643 45689999998876666677788999999999 7777666543
No 96
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=1.6e-10 Score=114.08 Aligned_cols=152 Identities=22% Similarity=0.318 Sum_probs=83.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------HHHHHHhhh---hcCC-C---eecCCCCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGE---QVGV-P---VYTAGTEV 248 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------idql~~~~~---~~gv-~---v~~~~~~~ 248 (481)
+.+++++|++|+||||++.+++.+++.+|++|++|+.|+..... +..+....+ ..++ | .+... ..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~-~~ 80 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASV-DL 80 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHH-HH
Confidence 46889999999999999999999999999999999999863110 111101111 1111 0 10000 00
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEcCCCCcccc--HHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHH-----HHh
Q 011624 249 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV-----TTF 318 (481)
Q Consensus 249 ~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d--~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~-----~~f 318 (481)
....+......+...+.|++||||||..... ......+.+......++.+++|+|+... .+..... ...
T Consensus 81 -~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~ 159 (253)
T PRK13768 81 -LLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL 159 (253)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence 1112233344444456799999999976431 1122222222221115788999999433 2221111 111
Q ss_pred hhcCCeeEEEEcCCCCCCc
Q 011624 319 NIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 319 ~~~~~i~GvIlnKvD~~~~ 337 (481)
..+.+ .-+|+||+|....
T Consensus 160 ~~~~~-~i~v~nK~D~~~~ 177 (253)
T PRK13768 160 RLGLP-QIPVLNKADLLSE 177 (253)
T ss_pred HcCCC-EEEEEEhHhhcCc
Confidence 21222 3478999997543
No 97
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=99.18 E-value=3.9e-12 Score=108.23 Aligned_cols=73 Identities=37% Similarity=0.615 Sum_probs=63.2
Q ss_pred cccHHHHHHHHhhhhccCCccccccCCCCCCCc----c-ccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----T-PAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 409 ~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~----~-~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
+||++||++|++++.+||+++++++++||+++. . .+....++..|+++++||+|||++|+.+|.++++||++|
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~~sR~~R 78 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLNESRRRR 78 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccchHHHHH
Confidence 599999999999999999999999999998765 2 112234567789999999999999999999999998876
No 98
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.14 E-value=2.8e-10 Score=115.20 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=36.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++++++|+|||||||+++.+|.+++++|++|++++.||-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 5899999999999999999999999999999999999853
No 99
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.08 E-value=5.3e-10 Score=108.51 Aligned_cols=124 Identities=21% Similarity=0.231 Sum_probs=79.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC------c--------hhHHHHHHHhhhhcCCCee-cCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY------R--------PAAIDQLVILGEQVGVPVY-TAG 245 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~------r--------p~aidql~~~~~~~gv~v~-~~~ 245 (481)
++|.+|+++|..|+||||++..|-.++..++.+..+|..||- - ..|.+-++.|....+-.+. .+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 468899999999999999999999999999999999999963 1 1123333333322211111 011
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccc--cHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 246 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 246 ~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~--d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.+...-+.+...+++. ...+|+|||||||.+.. +.++-.-+.+.+....|.-+++|+|.
T Consensus 97 LF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt 157 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDT 157 (366)
T ss_pred HHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecC
Confidence 1111122233555554 36799999999998754 33333333334455567888999997
No 100
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.06 E-value=4.8e-09 Score=99.47 Aligned_cols=166 Identities=25% Similarity=0.400 Sum_probs=99.0
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----HHHHHHhhhhcCCCe-------ecCCCCCCHH
Q 011624 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----IDQLVILGEQVGVPV-------YTAGTEVKPS 251 (481)
Q Consensus 185 VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----idql~~~~~~~gv~v-------~~~~~~~~~~ 251 (481)
.+.++|. +|+|||+++..|+.+|.++|.+|. .|||-. -+......+..+... +.......|.
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~-----~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVG-----YFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPH 76 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE-----EEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE-----EEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHH
Confidence 3555555 999999999999999999999998 444311 011112222333221 1111122221
Q ss_pred HH---------HHHH-HHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHH
Q 011624 252 QI---------AKQG-LEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT 316 (481)
Q Consensus 252 ~~---------l~~~-l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~ 316 (481)
-. +.+. ++++ .+++|++||+++|.... ...+..++++.+. .++++|+++..+ .++...++
T Consensus 77 ~~~~~~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~----a~vIlV~~~~~g~i~~~l~~~~ 151 (199)
T PF13500_consen 77 LAAELEGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNADIAKALG----APVILVASGRLGTINHTLLTIE 151 (199)
T ss_dssp HHHHHHT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT-----EEEEEEESSTTHHHHHHHHHH
T ss_pred HHhhccCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHHHHHHHcC----CCEEEEeCCCCCCHHHHHHHHH
Confidence 11 1111 1333 36899999999987654 3355667666666 789999998444 33333334
Q ss_pred Hh-hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCC
Q 011624 317 TF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE 365 (481)
Q Consensus 317 ~f-~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~ 365 (481)
.+ ..+.++.|+|+|+++.. ..+..+.+.+++|+ +|..|...++.
T Consensus 152 ~~~~~g~~v~GvI~N~~~~~---~~~~~l~~~~~i~v--lg~iP~~~~L~ 196 (199)
T PF13500_consen 152 ALKQRGIRVLGVILNRVPEP---ENLEALREKSGIPV--LGVIPEDPDLS 196 (199)
T ss_dssp HHHCTTS-EEEEEEEECTCC---HHHHHHHHHHCCEE--CE---SSTT--
T ss_pred HHHhcCCCEEEEEEECCCCH---HHHHHHHHhCCCCE--EEECCCCcccc
Confidence 33 34678999999998765 35566777889999 89988887754
No 101
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.03 E-value=2.4e-09 Score=104.38 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h----HHHHHHHHHhhhcCCeeEEEEcCCCCCCch
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G----QEAAALVTTFNIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~----~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~ 338 (481)
+..|++|||||+..+- ..++.+ ...|.+++|..++. + ..+++.++.|+- ..++|+||.+....
T Consensus 162 E~~~~~IIDsaaG~gC--pVi~sl------~~aD~ai~VTEPTp~glhD~kr~~el~~~f~i---p~~iViNr~~~g~s- 229 (284)
T COG1149 162 ELADLLIIDSAAGTGC--PVIASL------KGADLAILVTEPTPFGLHDLKRALELVEHFGI---PTGIVINRYNLGDS- 229 (284)
T ss_pred hhcceeEEecCCCCCC--hHHHhh------ccCCEEEEEecCCccchhHHHHHHHHHHHhCC---ceEEEEecCCCCch-
Confidence 3379999999987642 233332 23477888887743 3 334455555542 37899999943222
Q ss_pred hHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 339 GAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 339 g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
.+...++..|+|+ ++..|..++
T Consensus 230 -~ie~~~~e~gi~i--l~~IPyd~~ 251 (284)
T COG1149 230 -EIEEYCEEEGIPI--LGEIPYDKD 251 (284)
T ss_pred -HHHHHHHHcCCCe--eEECCcchh
Confidence 6788999999999 777766655
No 102
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.02 E-value=6.3e-10 Score=112.90 Aligned_cols=40 Identities=38% Similarity=0.566 Sum_probs=37.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++++++|+|||||||+++++|.++++.|++|++|..||-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4799999999999999999999999999999999999974
No 103
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.99 E-value=3.4e-09 Score=92.26 Aligned_cols=88 Identities=27% Similarity=0.367 Sum_probs=60.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe-ecCC--------CCCCHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV-YTAG--------TEVKPSQIAKQ 256 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v-~~~~--------~~~~~~~~l~~ 256 (481)
++++|++|+||||++.+|+.+|+++|++|+++|+|+ +...+.+.... .+.+. +..+ .........++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~--~~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--GEIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc--CCceEEEEecccccCCCCCEehhhHHHHH
Confidence 678999999999999999999999999999999999 33333321111 11111 1111 11111135667
Q ss_pred HHHHHHcCCCcEEEEcCCCCc
Q 011624 257 GLEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~ 277 (481)
.+..+...++|++++||++.+
T Consensus 78 ~l~~~~~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeEccCCCEEEEecHHHH
Confidence 777764578999999998765
No 104
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.96 E-value=5e-09 Score=96.32 Aligned_cols=134 Identities=25% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc---hhH-HHHHHHhhh-h--cC--CCeecCCC------------CCC
Q 011624 191 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-IDQLVILGE-Q--VG--VPVYTAGT------------EVK 249 (481)
Q Consensus 191 ~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r---p~a-idql~~~~~-~--~g--v~v~~~~~------------~~~ 249 (481)
.+|+||||++.+|+.+|+++|++|.++...... .+. .+.+..+.. . .. .++..... ...
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 85 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFALPLSPHIAADQEGRPID 85 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCCCCChHHHHHHhCCCCC
Confidence 389999999999999999999999986211111 000 011111000 0 00 00110000 011
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCC
Q 011624 250 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIG 323 (481)
Q Consensus 250 ~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~ 323 (481)
. +.+.+.++.+. ++||+|||||||.... +......+..... .++++|++...+ .++......+. ...+
T Consensus 86 ~-~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~----~~vilV~~~~~~~~~~~~~~~~~l~~~~~~ 159 (166)
T TIGR00347 86 L-EELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQ----LPVILVVRVKLGTINHTLLTVEHARQTGLT 159 (166)
T ss_pred H-HHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHhC----CCEEEEECCCCcHHHHHHHHHHHHHHCCCC
Confidence 1 12345566654 7899999999986542 2223444443333 789999988443 22223333343 3578
Q ss_pred eeEEEEc
Q 011624 324 ITGAILT 330 (481)
Q Consensus 324 i~GvIln 330 (481)
+.|+|+|
T Consensus 160 i~gvv~N 166 (166)
T TIGR00347 160 LAGVILN 166 (166)
T ss_pred eEEEEeC
Confidence 9999997
No 105
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.92 E-value=4.2e-08 Score=95.50 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=96.6
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-----------HHHHHhhhhcCCCe----e---cCCC
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVILGEQVGVPV----Y---TAGT 246 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-----------dql~~~~~~~gv~v----~---~~~~ 246 (481)
+.++|. +|+|||++++.|+.+|.++|.+|. .|||-.. +....+.+..+.+. . ....
T Consensus 5 ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~-----~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~ 79 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKTVA-----GYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSE 79 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE-----EECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCC
Confidence 556655 999999999999999999999999 5554210 11112223233211 0 0111
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcchH--HHH
Q 011624 247 ---------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAA 312 (481)
Q Consensus 247 ---------~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~ 312 (481)
..+..+ +.+.++.+. +++|+||||++|.+.. +...+.++.... ..++++|++...+. .+.
T Consensus 80 ~~a~~~~~~~i~~~~-i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~----~~pvilV~~~~lg~in~~l 153 (231)
T PRK12374 80 EESSVAHSCPINYTL-MSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQE----QLPVLMVVGIQEGCINHAL 153 (231)
T ss_pred CcChHHcCCcCCHHH-HHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHh----CCCEEEEECCCcChHHHHH
Confidence 112222 344555554 7899999999985533 112333333332 37889999775442 222
Q ss_pred HHHHHh-hhcCCeeEEEEcCCCCCCch--hHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 313 ALVTTF-NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 313 ~~~~~f-~~~~~i~GvIlnKvD~~~~~--g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
-.++.+ ...+.+.|+|+|+++..... .....+.+..+.|+ +|..|...+
T Consensus 154 Lt~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~--lg~iP~~~~ 205 (231)
T PRK12374 154 LTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IGELPYLPR 205 (231)
T ss_pred HHHHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCE--EEEeCCCCC
Confidence 222333 34678999999999864321 12334455678888 888776654
No 106
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.91 E-value=5e-09 Score=94.90 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=69.7
Q ss_pred EEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH------------HH---------------HHHHhhh
Q 011624 184 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------ID---------------QLVILGE 235 (481)
Q Consensus 184 ~VI~i~G-~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a------------id---------------ql~~~~~ 235 (481)
++|.++| .+|+||||++.+||..|+++|++|++||+|.+.+.. .+ .+..+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 4777877 499999999999999999999999999999876532 11 1111111
Q ss_pred ---hcCCCeecCCCCCCHH-----HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc
Q 011624 236 ---QVGVPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 236 ---~~gv~v~~~~~~~~~~-----~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~ 306 (481)
..++.++.......+. +.+.+.++.++ +.||+||||+|+....... .. +.. ..+.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~--~~---~l~--~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT--QA---VLE--LADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH--HH---HHT--THSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH--HH---HHH--HCCEEEEEECCC
Confidence 1233334333322222 23466777775 5899999999988753211 11 111 137888888773
No 107
>COG1159 Era GTPase [General function prediction only]
Probab=98.90 E-value=8.7e-09 Score=101.85 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=112.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+...++++|.+.|||||+..+|. |.||.+++--++ .+.....|+...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~Q--------TTR~~I~GI~t~------------------- 51 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQ--------TTRNRIRGIVTT------------------- 51 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecCCcc--------hhhhheeEEEEc-------------------
Confidence 34588999999999999999997 999998876665 233333344321
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhh--ccCCceEEEEEeCcc--hHHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKR--VLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~--~~~p~~vvLVvda~~--~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
+++.+|+|||||.......+-..|.+... .-..|-+++|+|+.. +.....++..+...--..-+++||+|....
T Consensus 52 --~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 52 --DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred --CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 47789999999987553333222222221 123478899999944 322223333333311234588999997665
Q ss_pred hhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHH-------hhchhHHHHHHHhhhcccc
Q 011624 338 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQE-------VMQQEDAEEMQKKIMSANF 410 (481)
Q Consensus 338 ~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e-------~~~~~~~~~~~~k~~~~~~ 410 (481)
...++.+.+....-..|. ++.+ .|..-|. .+..+.+...+ .++++...+...+++..++
T Consensus 130 ~~~l~~~~~~~~~~~~f~-------~ivp------iSA~~g~-n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 130 KTVLLKLIAFLKKLLPFK-------EIVP------ISALKGD-NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred HHHHHHHHHHHHhhCCcc-------eEEE------eeccccC-CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence 543334333322111111 0111 1111111 12222222233 3356777888899999999
Q ss_pred cHHHHHHHHhhh
Q 011624 411 DFNDFLKQTRTV 422 (481)
Q Consensus 411 dl~~l~~~~~~~ 422 (481)
.+|+++..+++-
T Consensus 196 iREk~~~~l~eE 207 (298)
T COG1159 196 IREKLLLLLREE 207 (298)
T ss_pred HHHHHHHhcccc
Confidence 999999988764
No 108
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.86 E-value=3.2e-08 Score=110.72 Aligned_cols=172 Identities=25% Similarity=0.260 Sum_probs=99.7
Q ss_pred EEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 186 I~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
+.++|. +|+|||+++..|+.+|.++|++|. .|||...+.+ .+..... .+..+......+.+.+.+..+. .
T Consensus 5 l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg-----~fKPi~~~p~-~~~~~~~--~~~~~~~~~~~~~I~~~~~~l~-~ 75 (684)
T PRK05632 5 IYLAPTGTGVGLTSVSLGLMRALERKGVKVG-----FFKPIAQPPL-TMSEVEA--LLASGQLDELLEEIVARYHALA-K 75 (684)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEE-----EeCCcccCCC-CHHHHHH--HHhccCChHHHHHHHHHHHHhc-c
Confidence 455555 999999999999999999999999 6666432211 0000000 0000000111233445555553 7
Q ss_pred CCcEEEEcCCCCcccc---HHHHHHHHhhhhccCCceEEEEEeCc--chHHHHHHH----HHhh--hcCCeeEEEEcC--
Q 011624 265 NVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV----TTFN--IEIGITGAILTK-- 331 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d---~~~~~el~~i~~~~~p~~vvLVvda~--~~~~~~~~~----~~f~--~~~~i~GvIlnK-- 331 (481)
+||++|||+++....+ ..+..++++.+. .++++|+++. +..++.+.+ ..|. ....+.|+|+||
T Consensus 76 ~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~----~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~ 151 (684)
T PRK05632 76 DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG----AEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLN 151 (684)
T ss_pred CCCEEEEeCcCCCCcCcccCchHHHHHHHhC----CCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCC
Confidence 8999999998654321 223455555555 7899999883 222333222 3342 457899999999
Q ss_pred CCCCCchhHHHHH------------------HHHhCCCeEEeecCCCCCCCCCcChhhHh
Q 011624 332 LDGDSRGGAALSV------------------KEVSGKPIKLVGRGERMEDLEPFYPDRMA 373 (481)
Q Consensus 332 vD~~~~~g~~~~~------------------~~~~glPV~~ig~g~~v~dl~~f~~~~~~ 373 (481)
++.. ..+.+... ....++|+ +|..|....|....-..+.
T Consensus 152 v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~--LG~IP~d~~L~~~t~~~i~ 208 (684)
T PRK05632 152 APVD-EQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPL--LGVVPWSPDLIAPRVIDIA 208 (684)
T ss_pred CCHH-HHHHHHHHHHhhhccccccchhcchhhhcCCCce--EEEccCccccCCCCHHHHH
Confidence 5544 22222221 12345666 8888888776644334333
No 109
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.84 E-value=5.2e-08 Score=86.88 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=82.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCC
Q 011624 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266 (481)
Q Consensus 187 ~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~ 266 (481)
.++| .|+||||++..|+..|+++|.+|. .|||... +
T Consensus 4 ~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~-----~~kp~~~--------------------------------------~ 39 (134)
T cd03109 4 FGTG-TDIGKTVATAILARALKEKGYRVA-----PLKPVQT--------------------------------------Y 39 (134)
T ss_pred EeCC-CCcCHHHHHHHHHHHHHHCCCeEE-----EEecCCC--------------------------------------C
Confidence 3446 559999999999999999999999 7776642 6
Q ss_pred cEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCCCCc--h
Q 011624 267 DVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR--G 338 (481)
Q Consensus 267 D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~~~--~ 338 (481)
|++|||++|.... ......++.+..+ .++++|.+...+ .++...++.. ...+.+.|+|.|+.+.... .
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~----~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~ 115 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELN----LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLAT 115 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhC----CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhh
Confidence 9999999987653 2222334433333 678888877333 2233333222 3356789999999886432 1
Q ss_pred hHHHHHHHHhCCCeEEeecC
Q 011624 339 GAALSVKEVSGKPIKLVGRG 358 (481)
Q Consensus 339 g~~~~~~~~~glPV~~ig~g 358 (481)
..+..+.+.+++|+ +|..
T Consensus 116 ~~~~~i~~~~gip~--LG~I 133 (134)
T cd03109 116 LNVETIERLTGIPV--LGIV 133 (134)
T ss_pred hhHHHHHHhcCCCE--EEeC
Confidence 23466778889998 7654
No 110
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.84 E-value=3.5e-08 Score=80.89 Aligned_cols=34 Identities=50% Similarity=0.759 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+++++|++|+||||++.+||..|++.|++|+++|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678899999999999999999999999999998
No 111
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.81 E-value=2.3e-08 Score=93.38 Aligned_cols=145 Identities=23% Similarity=0.301 Sum_probs=95.7
Q ss_pred CCC-EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-CC--HHHHHHH
Q 011624 181 SRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VK--PSQIAKQ 256 (481)
Q Consensus 181 ~~~-~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-~~--~~~~l~~ 256 (481)
.+| ..|.+.|++|||||++..++...|+++ +++++|..|.|...-.+.+... .|.+++...+. .. ++.....
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~ 85 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLE 85 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHH
Confidence 356 678889999999999999999999987 9999999999973333333221 67777655443 33 6667777
Q ss_pred HHHHHHc--CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCC
Q 011624 257 GLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG 334 (481)
Q Consensus 257 ~l~~~~~--~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~ 334 (481)
+++++.. .+.|++||++.|.+.- ....++ ..+-.++|+|.+.|.+.-... +..-..-.-+|+||.|.
T Consensus 86 ai~~l~~~~~~~Dll~iEs~GNL~~--~~sp~L-------~d~~~v~VidvteGe~~P~K~--gP~i~~aDllVInK~DL 154 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVGNLVC--PFSPDL-------GDHLRVVVIDVTEGEDIPRKG--GPGIFKADLLVINKTDL 154 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCcceec--ccCcch-------hhceEEEEEECCCCCCCcccC--CCceeEeeEEEEehHHh
Confidence 7877743 2379999999993321 011111 113568899988776543221 11001124489999998
Q ss_pred CCchhH
Q 011624 335 DSRGGA 340 (481)
Q Consensus 335 ~~~~g~ 340 (481)
....|.
T Consensus 155 a~~v~~ 160 (202)
T COG0378 155 APYVGA 160 (202)
T ss_pred HHHhCc
Confidence 766554
No 112
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.81 E-value=1.6e-07 Score=89.80 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=81.5
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC---CCHHHHHHH
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAKQ 256 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~---~~~~~~l~~ 256 (481)
.++++++.++|..|+||||+..+++..+. .+.+|.++..|+...-..+.++ ..|.+++..... ........+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~----~~~~~~~~l~~gcic~~~~~~~~~ 93 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLR----KYGAPAIQINTGKECHLDAHMVAH 93 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHH----HcCCcEEEEcCCCcccCChHHHHH
Confidence 34688999999999999999999988765 4689999999987432222332 233443332211 111222335
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH-HHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~-~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.+..+...++|+|||||.|.+.... . . . ......+.|+|+..+... ......+. ...-+++||.|..
T Consensus 94 ~l~~~~~~~~d~IiIEt~G~l~~~~----~---~-~-~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 94 ALEDLPLDDIDLLFIENVGNLVCPA----D---F-D-LGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADLA 161 (207)
T ss_pred HHHHhccCCCCEEEEecCCCcCCCc----c---c-c-cccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHcc
Confidence 5555533478999999999432111 0 0 0 112444677887544322 11111121 1235899999974
Q ss_pred C
Q 011624 336 S 336 (481)
Q Consensus 336 ~ 336 (481)
.
T Consensus 162 ~ 162 (207)
T TIGR00073 162 E 162 (207)
T ss_pred c
Confidence 3
No 113
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.80 E-value=1.3e-08 Score=99.48 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=28.7
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 188 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 188 i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++|+.||||||.+.++..++...|++|.+|..||-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 57999999999999999999999999999999974
No 114
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.79 E-value=2.8e-07 Score=88.82 Aligned_cols=168 Identities=26% Similarity=0.390 Sum_probs=105.4
Q ss_pred EEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH---H-----HHHHHhhhhcCCCe-------ecCCCC
Q 011624 184 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I-----DQLVILGEQVGVPV-------YTAGTE 247 (481)
Q Consensus 184 ~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a---i-----dql~~~~~~~gv~v-------~~~~~~ 247 (481)
+.+.++|. +|+|||++++.|+.+|+.+|++|. .|+|-. . ++...+.+..+++. +.....
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~-----~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P 77 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA-----GYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEP 77 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE-----EECceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCC
Confidence 35677777 999999999999999999999999 666421 0 22334455444441 111112
Q ss_pred CCHH------------HHHHHHHHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HH
Q 011624 248 VKPS------------QIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 310 (481)
Q Consensus 248 ~~~~------------~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~ 310 (481)
..|. +.+...+..+. ..||+|||+++|..-. +...+..+....+ .+++||+....| ..
T Consensus 78 ~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~----lpvILV~~~~LGtINH 152 (223)
T COG0132 78 LSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQ----LPVILVVGIKLGTINH 152 (223)
T ss_pred CCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcC----CCEEEEecCCccHHHH
Confidence 2222 12234444554 5899999999998754 3344444444444 789999987444 23
Q ss_pred HHHHHHHh-hhcCCeeEEEEcCCCCCC-chhHH-HHHHHHhCCCeEEeecCCCCCC
Q 011624 311 AAALVTTF-NIEIGITGAILTKLDGDS-RGGAA-LSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 311 ~~~~~~~f-~~~~~i~GvIlnKvD~~~-~~g~~-~~~~~~~glPV~~ig~g~~v~d 363 (481)
+.-.++.. ...+++.|+|+|...... +.... ..+...++.|+ +|..|...+
T Consensus 153 tlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~--~g~~p~~~~ 206 (223)
T COG0132 153 TLLTVEALRARGLPLAGWVANGINPELDHYAEINATLLKRIGAPL--LGIIPYLPE 206 (223)
T ss_pred HHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhcCCCc--cccccCCcc
Confidence 32222222 457889999999987543 33333 35677889998 777766554
No 115
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.74 E-value=8.6e-08 Score=89.54 Aligned_cols=147 Identities=21% Similarity=0.234 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC---CCHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAKQGLEEA 261 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~---~~~~~~l~~~l~~~ 261 (481)
|++++|.-|+||||+..+|.. ...+|.++++|-.|.-..+.-.++ -...|+++...... ......+...+..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~---l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAEL---LQEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHH---HHTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhh---hcccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 789999999999999999998 667799999999997654432222 12235555444321 11112223445554
Q ss_pred Hc-C--CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 262 KK-K--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 262 ~~-~--~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.. . ++|+|||++.|..+...- +..-..+...+..+.++.|+|+..- ......+...-... .-||+||.|..
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--DvIvlnK~D~~ 154 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA--DVIVLNKIDLV 154 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---SEEEEE-GGGH
T ss_pred HHhcCCCcCEEEECCccccccchh-hhccccccccccccceeEEeccccccccccchhhhhhcchhc--CEEEEeccccC
Confidence 32 3 579999999996543322 1112223333445788999999432 22222222211111 45899999975
Q ss_pred Cch
Q 011624 336 SRG 338 (481)
Q Consensus 336 ~~~ 338 (481)
...
T Consensus 155 ~~~ 157 (178)
T PF02492_consen 155 SDE 157 (178)
T ss_dssp HHH
T ss_pred Chh
Confidence 544
No 116
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.73 E-value=2.7e-07 Score=91.65 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=81.8
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH--HHHHHHHhhhcCC-eeEEEEcCCCCCCc-h
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--AAALVTTFNIEIG-ITGAILTKLDGDSR-G 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~--~~~~~~~f~~~~~-i~GvIlnKvD~~~~-~ 338 (481)
++++++.||||||... ...++..... ..+.+++|+|+..+.. .....+... ..+ ...+++||+|.... .
T Consensus 61 ~~~~~i~liDtPG~~~----f~~~~~~~l~--~aD~~i~Vvd~~~g~~~~~~~~~~~~~-~~~~p~iivvNK~D~~~~~~ 133 (268)
T cd04170 61 WKGHKINLIDTPGYAD----FVGETRAALR--AADAALVVVSAQSGVEVGTEKLWEFAD-EAGIPRIIFINKMDRERADF 133 (268)
T ss_pred ECCEEEEEEECcCHHH----HHHHHHHHHH--HCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEEEEEECCccCCCCH
Confidence 4678899999999753 2222322333 2478899999965421 112222111 222 25579999996532 3
Q ss_pred h-HHHHHHHHhCCCeEE--ee--cCCCCCCCCCcChhhHhhh-------hcCC-chhHHHHHHHHHhhc---hhHHHHHH
Q 011624 339 G-AALSVKEVSGKPIKL--VG--RGERMEDLEPFYPDRMAGR-------ILGM-GDVLSFVEKAQEVMQ---QEDAEEMQ 402 (481)
Q Consensus 339 g-~~~~~~~~~glPV~~--ig--~g~~v~dl~~f~~~~~~~r-------~lGl-gd~~~lve~a~e~~~---~~~~~~~~ 402 (481)
. .+..+...++.++.. ++ .+.++..+..........+ ...+ .+....++.+++.+. .+..++++
T Consensus 134 ~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~ 213 (268)
T cd04170 134 DKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELM 213 (268)
T ss_pred HHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 3 334455567776542 22 2222211100000000000 0011 122222333333332 24456788
Q ss_pred Hhhhcc-cccHHHHHHHHhhhhccCCccc
Q 011624 403 KKIMSA-NFDFNDFLKQTRTVARMGSMSR 430 (481)
Q Consensus 403 ~k~~~~-~~dl~~l~~~~~~~~~~g~~~~ 430 (481)
++++++ +++-+++.+.++..-..|.+.+
T Consensus 214 e~yl~~~~~~~~~l~~~l~~~~~~~~~~p 242 (268)
T cd04170 214 EKYLEGGELTEEELHAGLRRALRAGLLVP 242 (268)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 899986 8999999998887765555443
No 117
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.73 E-value=1.8e-07 Score=85.83 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-------CCCHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-------EVKPSQIAKQG 257 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-------~~~~~~~l~~~ 257 (481)
+++++|..|+||||+...++... .|.++.++..|....+.-.+. .. ..+.+++.... ..+..+.+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~-~~--~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQL-VV--DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHH-Hh--CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 67899999999999999887653 488999988886544432222 11 23344444332 11222222222
Q ss_pred HHHH--HcCCCcEEEEcCCCCccccHHHHHHH---HhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCe-eEEEEcC
Q 011624 258 LEEA--KKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 331 (481)
Q Consensus 258 l~~~--~~~~~D~VIIDt~G~~~~d~~~~~el---~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i-~GvIlnK 331 (481)
+..+ ...++|+|+|||+|..... ..+..+ ..+......+.++.|+|+............+...+.. .-||+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 3332 1257899999999987432 233221 1122233357789999985433222111111111111 3489999
Q ss_pred CCC
Q 011624 332 LDG 334 (481)
Q Consensus 332 vD~ 334 (481)
.|.
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 983
No 118
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.68 E-value=3.8e-07 Score=90.95 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=83.8
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCC-ch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDS-RG 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~-~~ 338 (481)
++++.+.+|||||... ...++...... .+.+++|+|+..+. .....++... ...++ -+++||+|... ..
T Consensus 61 ~~~~~i~liDTPG~~d----f~~~~~~~l~~--aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVD----FTIEVERSLRV--LDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADF 133 (270)
T ss_pred ECCEEEEEEECCCcHH----HHHHHHHHHHH--cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCCH
Confidence 4678899999999753 33343333333 37889999995541 1112222111 12333 48999999643 33
Q ss_pred hH-HHHHHHHhCCCeE--EeecCCC-----CCCCCCcChhhHhh------hhcC-CchhHHHHHHHHHhhch---hHHHH
Q 011624 339 GA-ALSVKEVSGKPIK--LVGRGER-----MEDLEPFYPDRMAG------RILG-MGDVLSFVEKAQEVMQQ---EDAEE 400 (481)
Q Consensus 339 g~-~~~~~~~~glPV~--~ig~g~~-----v~dl~~f~~~~~~~------r~lG-lgd~~~lve~a~e~~~~---~~~~~ 400 (481)
.. +..+.+.++..+. .++.+.. +-|+-.-..-.+.. .... ..+..+.++.+++.+-+ +..++
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~ 213 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDE 213 (270)
T ss_pred HHHHHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 33 3455556654322 2222221 11221100000000 0000 11223334444443322 45667
Q ss_pred HHHhhhcc-cccHHHHHHHHhhhhccCCccc
Q 011624 401 MQKKIMSA-NFDFNDFLKQTRTVARMGSMSR 430 (481)
Q Consensus 401 ~~~k~~~~-~~dl~~l~~~~~~~~~~g~~~~ 430 (481)
++++++++ +++.+++.+.++..-..|.+-+
T Consensus 214 L~e~yl~~~~~~~~el~~~l~~~~~~~~~~P 244 (270)
T cd01886 214 LMEKYLEGEEITEEEIKAAIRKGTIANKIVP 244 (270)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCcEEE
Confidence 89999998 8999999999988765555443
No 119
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.64 E-value=2.1e-07 Score=95.73 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=77.7
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh-----HHHHH------HHhhhhcCCCeecCC---
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-----AIDQL------VILGEQVGVPVYTAG--- 245 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~-----aidql------~~~~~~~gv~v~~~~--- 245 (481)
...+.+++++|+.+|||||+++-||..+..+|++|.+||+|+-.++ .+.-. ..+.+......+-.+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 3456799999999999999999999999999999999999986533 21100 000111111111111
Q ss_pred CCCCHHHH---HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 246 TEVKPSQI---AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 246 ~~~~~~~~---l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+...+... +..+++.++ +..|++||||+|....+ ..+.-...+..+++|+.++.+=++
T Consensus 150 P~~~~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~-~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 150 PQGFPGRYIAGVARLVDLAK-KEADFILIDTDGWIKGW-GGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CCCChHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCc-hHHHHHHHHHhhcCCCEEEEeccc
Confidence 11222222 345566664 44799999999997532 333444556677788877766444
No 120
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.62 E-value=4.5e-07 Score=88.48 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
+++..|+|||||||++++||.+++++|++|+++|+|+..+..
T Consensus 5 ~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 5 HMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 344459999999999999999999999999999999998754
No 121
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.60 E-value=4.2e-07 Score=72.63 Aligned_cols=75 Identities=29% Similarity=0.595 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHH
Q 011624 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDEL 165 (481)
Q Consensus 88 l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 165 (481)
|+++|.++.+++.+...++++++++++++|+.+|+++||+.+++.+|++++++...+ ..+.++.+.+.++++++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 678999999999988777899999999999999999999999999999999995444 345677788888888775
No 122
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.59 E-value=6.6e-07 Score=87.56 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L-~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.++++|++|+||||+...|+... ...| ...++..|.+-....+...++.....+. ....+..+ +.+.++.+..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~--~g~~t~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~~-v~~~i~~~~~ 101 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLILQLINSSTEYAEFLHCKG---KKFTDFDE-VRNEIEAETD 101 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccC--CCcccccceEEEccCCCCcceEEEecCC---cccCCHHH-HHHHHHHHHH
Confidence 67889999999999999998431 1111 2233333333222111112222222221 11122222 2333332210
Q ss_pred ---------------------CCCcEEEEcCCCCccc---c--HHHHHHHHhhh-hccC-C-ceEEEEEeCcc---hHHH
Q 011624 264 ---------------------KNVDVVIVDTAGRLQI---D--KAMMDELKDVK-RVLN-P-TEVLLVVDAMT---GQEA 311 (481)
Q Consensus 264 ---------------------~~~D~VIIDt~G~~~~---d--~~~~~el~~i~-~~~~-p-~~vvLVvda~~---~~~~ 311 (481)
.-.|+.||||||.... + ......+.++. ..+. + +-+++|+|+.. .+++
T Consensus 102 ~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~ 181 (240)
T smart00053 102 RVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA 181 (240)
T ss_pred HhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH
Confidence 1278999999999642 1 22222333221 2222 2 35688888843 3455
Q ss_pred HHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCC
Q 011624 312 AALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (481)
Q Consensus 312 ~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glP 351 (481)
...++.+++.-.-.-+|+||+|....+..+.+++.....|
T Consensus 182 l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~ 221 (240)
T smart00053 182 LKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLP 221 (240)
T ss_pred HHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccc
Confidence 6777777765445567999999877666666665543333
No 123
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.57 E-value=1.9e-06 Score=84.27 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=79.6
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-HHHHHHHHh-h-hcCCeeEEEEcCCCCC-Cch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTF-N-IEIGITGAILTKLDGD-SRG 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~~~~~~~f-~-~~~~i~GvIlnKvD~~-~~~ 338 (481)
++++.+.++||||.... ..+....... .+.+++|+|+..+. .....+..+ . ..++ .-+++||+|.. ...
T Consensus 61 ~~~~~i~liDTPG~~~f----~~~~~~~l~~--aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~ 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDF----IAEVERSLSV--LDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGADL 133 (237)
T ss_pred ECCEEEEEEeCCCccch----HHHHHHHHHH--hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCCH
Confidence 46778999999998542 2233222232 37889999996542 111222221 1 1233 34899999964 343
Q ss_pred hH-HHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcc-cccHHHHH
Q 011624 339 GA-ALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFL 416 (481)
Q Consensus 339 g~-~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~-~~dl~~l~ 416 (481)
.. +..+...++.++..+.. |.+.+. +. .. -.. -..++|.+.| ..++++++++++ +++-++++
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~-p~~~~~--~~--~~----~~~--~~~l~e~vae-----~dd~l~e~yl~~~~~~~~el~ 197 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQK-VGLAPN--IC--ET----NEI--DDEFWETLAE-----GDDELLEKYLEGGPIEELELD 197 (237)
T ss_pred HHHHHHHHHHHCCCeEEEEC-CcEeee--ee--ee----eec--cHHHHHHHhc-----CCHHHHHHHhCCCCCCHHHHH
Confidence 33 45666777766532221 111110 00 00 000 0223333332 345688888888 89999999
Q ss_pred HHHhhhhccCCccc
Q 011624 417 KQTRTVARMGSMSR 430 (481)
Q Consensus 417 ~~~~~~~~~g~~~~ 430 (481)
+.++..-..|.+-+
T Consensus 198 ~~l~~~~~~~~~~P 211 (237)
T cd04168 198 NELSARIAKRKVFP 211 (237)
T ss_pred HHHHHHHHhCCeEE
Confidence 99988766555443
No 124
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.51 E-value=6e-07 Score=82.59 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=42.0
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
.++|.+|.++|.+|+||||++..|...|.++|++|.++|+|.-|-+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 3568899999999999999999999999999999999999986643
No 125
>PRK00089 era GTPase Era; Reviewed
Probab=98.49 E-value=6.4e-07 Score=90.02 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=68.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..+|+++|.+||||||++..|. |.++..+...++... ....+ ++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~--------~~i~~--i~~------------------ 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR--------HRIRG--IVT------------------ 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCCCCCccc--------ccEEE--EEE------------------
Confidence 34588999999999999998886 777776655443110 00000 110
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhh--hhccCCceEEEEEeCcc--hHHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i--~~~~~p~~vvLVvda~~--~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.++++++++||||.......+-..+... ......+.+++|+|+.. .......+......-...-+|+||+|....
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 1346899999999864332222211111 11224578899999854 222222223222111234589999997633
No 126
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.48 E-value=1.3e-06 Score=87.28 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC---CCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQGL 258 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~---~~~~~~~l~~~l 258 (481)
+..++.++|.+|+||||+..+|...|... .++.+|..|.....-.+-+ ...|++++.... .......+.+++
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI----~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARI----RATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHH----HhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 45789999999999999999999888654 5899999998654322222 345666654433 222344566778
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCe-eEEEEcCCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i-~GvIlnKvD~~~ 336 (481)
..+...+.|++||++.|.+...... .+. . ...+.|++...+.+. ...|...+.. .-+|+||+|...
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f--dlg---e----~~~v~vlsV~eg~dk---plKyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF--DLG---E----KHKVAVLSVTEGEDK---PLKYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc--chh---h----ceeEEEEECcccccc---chhccchhhcCcEEEEEhHHcCc
Confidence 8876678899999999964211110 111 1 222455565444221 1122222222 458999999754
No 127
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.47 E-value=1.1e-06 Score=83.72 Aligned_cols=57 Identities=32% Similarity=0.476 Sum_probs=46.3
Q ss_pred HHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHH
Q 011624 166 VKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 229 (481)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidq 229 (481)
.++++++.. +..++.++|++|+|||+++..++....++|.+|++++++-+.+..+.+
T Consensus 2 D~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 2 DELLGGGVE-------RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred hhhhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 345666553 468999999999999999999999998889999999998666554443
No 128
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.43 E-value=2.1e-06 Score=82.83 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=49.4
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql 230 (481)
..|.++++++.. ...++.++|++|+||||++..+|....+.|.+|++++++.+.+....++
T Consensus 10 ~~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~ 70 (225)
T PRK09361 10 KMLDELLGGGFE-------RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQI 70 (225)
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH
Confidence 456777766553 4679999999999999999999999988999999999996555544443
No 129
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.42 E-value=2.7e-06 Score=84.69 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=47.8
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-HHHHHHHHhhh--cCCeeEEEEcCCCCCCc-h
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNI--EIGITGAILTKLDGDSR-G 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~~~~~~~f~~--~~~i~GvIlnKvD~~~~-~ 338 (481)
++++.+.++||||... ...+...... ..+.+++|+|+..+. .....+..+.. +.+ .-+++||+|.... .
T Consensus 68 ~~~~~i~liDTPG~~d----f~~~~~~~l~--~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHED----FSEDTYRTLT--AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRDP 140 (267)
T ss_pred eCCEEEEEEECCCchH----HHHHHHHHHH--HCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCCH
Confidence 4678899999999743 2222222222 247889999996542 11122222221 233 4578999996433 3
Q ss_pred hH-HHHHHHHhCCCeE
Q 011624 339 GA-ALSVKEVSGKPIK 353 (481)
Q Consensus 339 g~-~~~~~~~~glPV~ 353 (481)
.. +..+...++.++.
T Consensus 141 ~~~~~~l~~~l~~~~~ 156 (267)
T cd04169 141 LELLDEIEEELGIDCT 156 (267)
T ss_pred HHHHHHHHHHHCCCce
Confidence 23 3456666777664
No 130
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.3e-06 Score=88.08 Aligned_cols=100 Identities=25% Similarity=0.495 Sum_probs=76.0
Q ss_pred HHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe
Q 011624 162 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (481)
Q Consensus 162 ~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v 241 (481)
..||.+++|++.. +..++++.|-+|.||||+...++..+++++ +|++|.+. ....|++..++++|++.
T Consensus 79 ~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~RL~~~~ 146 (456)
T COG1066 79 IEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRADRLGLPT 146 (456)
T ss_pred hHHHHhhhcCCcc-------cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHHHhCCCc
Confidence 4789999998775 457999999999999999999999999998 99999988 45678888888888765
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCC
Q 011624 242 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275 (481)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G 275 (481)
.+. .+.+.-.+.+.++.+...++|++|||+--
T Consensus 147 ~~l--~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 147 NNL--YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred cce--EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 322 12222223344445555789999999863
No 131
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.41 E-value=7.8e-07 Score=88.55 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=63.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.|+++|.+||||||+...|. |.++..+..-++. +.....++ .. ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~~~~T--------Tr~~i~~i--~~-------------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSPKAQT--------TRNRISGI--HT-------------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCCCCCc--------ccCcEEEE--EE-------------------cC
Confidence 47888999999999999987 6666644332221 10001111 10 13
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHh-hhh-ccCCceEEEEEeCcchHHHHHH-HHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKD-VKR-VLNPTEVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~-i~~-~~~p~~vvLVvda~~~~~~~~~-~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
++.++++||||.......+...+.+ ... ....+-+++|+|+......... .......-...-+|+||+|...
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKF 121 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCC
Confidence 4568999999976432222221211 111 1245788999999543211121 2222211123458999999753
No 132
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.41 E-value=6.4e-07 Score=94.44 Aligned_cols=109 Identities=27% Similarity=0.398 Sum_probs=76.0
Q ss_pred hHHHHHH--HHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCc-ccccc----ccC-C
Q 011624 110 IVEPMRD--IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGE-VSELV----FAK-S 181 (481)
Q Consensus 110 i~~~l~~--i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~-~~~~~----~~~-~ 181 (481)
.+.++.. +.+.|+++||+++++.+|++.+++.+..... .......+...+.+.+.+.++.. ...+. +.. .
T Consensus 176 ~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~--~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k 253 (475)
T PRK12337 176 PRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGD--RVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPP 253 (475)
T ss_pred CCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccC
Confidence 3455666 8999999999999999999999988742211 11234556666766666655432 11111 122 4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
+|.+|+++|.+|+||||++.+||..+ |. ..++..|..|-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~iR~ 292 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDAVRE 292 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhHHHH
Confidence 68999999999999999999999766 33 23788898663
No 133
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.40 E-value=2.6e-06 Score=81.74 Aligned_cols=53 Identities=34% Similarity=0.450 Sum_probs=45.1
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..|.++++++.. +..++.++|++|+||||++..+|..+..+|.+|++++++..
T Consensus 6 ~~LD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 6 KGLDELLGGGVE-------RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred hHHHHHhcCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 356777776553 56899999999999999999999999889999999999854
No 134
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.40 E-value=8.7e-06 Score=77.53 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=76.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec--C-CC-----CCCHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--A-GT-----EVKPSQIA 254 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~--~-~~-----~~~~~~~l 254 (481)
|..+.++|++|+||||+...+...+.. ..++.++..|.+.....+.+...+....-.++. . +. +.+....
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMN- 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHH-
Confidence 457899999999999999999877765 356888999987643222222211100001111 1 11 1122111
Q ss_pred HHHHHHHH--cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCe-eEEEEcC
Q 011624 255 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 331 (481)
Q Consensus 255 ~~~l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i-~GvIlnK 331 (481)
..++..+. ..++|+++|+|.|..-.. .....+ .+.++.|+|+..+.+.... ....+.. .-+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~~-~~~~~l--------~~~~i~vvD~~~~~~~~~~---~~~qi~~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLSA-TFSPEL--------ADLTIFVIDVAAGDKIPRK---GGPGITRSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCccc-ccchhh--------hCcEEEEEEcchhhhhhhh---hHhHhhhccEEEEEh
Confidence 22233331 246899999999942111 111111 2568999999766543221 1112222 3489999
Q ss_pred CCCCC
Q 011624 332 LDGDS 336 (481)
Q Consensus 332 vD~~~ 336 (481)
.|...
T Consensus 147 ~d~~~ 151 (199)
T TIGR00101 147 IDLAP 151 (199)
T ss_pred hhccc
Confidence 99753
No 135
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.8e-06 Score=78.35 Aligned_cols=112 Identities=25% Similarity=0.406 Sum_probs=67.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC----------------
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---------------- 246 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~---------------- 246 (481)
+.-|.++|++||||||++.+++..|.++|++|.=+-+---|-+ +...|..++...+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g--------GkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG--------GKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC--------CeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 4568899999999999999999999999999884433322211 1111111111100
Q ss_pred -----CC-CHHHHHHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 247 -----EV-KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 247 -----~~-~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.. ...+++..+++.+. +..|+||||--|-+.. ...+...+..++..-. +++.++.-
T Consensus 77 GkY~V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k--pliatlHr 139 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGK--PLIATLHR 139 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCC--cEEEEEec
Confidence 01 11234556666664 5689999999988765 3445555555555332 24555543
No 136
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.34 E-value=1.3e-06 Score=79.83 Aligned_cols=132 Identities=25% Similarity=0.251 Sum_probs=74.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
|+++|.+.|||||+-..|. |.++.+- .| |+ ..+...... +...+
T Consensus 3 ialvG~PNvGKStLfN~Lt------g~~~~v~---n~-pG-------------~Tv~~~~g~-------------~~~~~ 46 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALT------GAKQKVG---NW-PG-------------TTVEKKEGI-------------FKLGD 46 (156)
T ss_dssp EEEEESTTSSHHHHHHHHH------TTSEEEE---ES-TT-------------SSSEEEEEE-------------EEETT
T ss_pred EEEECCCCCCHHHHHHHHH------CCCceec---CC-CC-------------CCeeeeeEE-------------EEecC
Confidence 7889999999999998887 6553311 12 22 111100000 01245
Q ss_pred CcEEEEcCCCCccccHHHHHHH--HhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhH---
Q 011624 266 VDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGA--- 340 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el--~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~--- 340 (481)
..+.+||+||.......+.+|. .+.+..-+++-+++|+|++.-+.-......+.+.-...-+++||+|...+.|.
T Consensus 47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id 126 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEID 126 (156)
T ss_dssp EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-
T ss_pred ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEEC
Confidence 7899999999654322221111 11222346799999999966554445554444322335689999998665443
Q ss_pred HHHHHHHhCCCeE
Q 011624 341 ALSVKEVSGKPIK 353 (481)
Q Consensus 341 ~~~~~~~~glPV~ 353 (481)
...+.+.+|+||.
T Consensus 127 ~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 127 AEKLSERLGVPVI 139 (156)
T ss_dssp HHHHHHHHTS-EE
T ss_pred HHHHHHHhCCCEE
Confidence 3566778899994
No 137
>PHA02542 41 41 helicase; Provisional
Probab=98.34 E-value=0.00011 Score=78.96 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHhh-ccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 011624 128 LPVVRRFVQAVSEQAVG-VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206 (481)
Q Consensus 128 ~~~v~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~ 206 (481)
..+..+.++.+.++... .....++..+ ...|.++++++.. +..+++++|.+|+||||++.++|..
T Consensus 148 ~~~~~~~~~~ie~~~~~~~~~~~gi~TG-------~~~LD~~t~gGl~-------~G~LiiIaarPgmGKTtfalniA~~ 213 (473)
T PHA02542 148 SSVGHDYFEDYEERYDSYQSKANKIPFK-------LEILNKITKGGAE-------RKTLNVLLAGVNVGKSLGLCSLAAD 213 (473)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCccCCC-------cHHHHHhccCCCC-------CCcEEEEEcCCCccHHHHHHHHHHH
Confidence 55566666666554211 1112222222 2466677733332 4568999999999999999999998
Q ss_pred HHHcCCeEEEEeccCCc
Q 011624 207 LKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 207 L~~~G~kVlLId~D~~r 223 (481)
.++.|++|++++++.-+
T Consensus 214 ~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 214 YLQQGYNVLYISMEMAE 230 (473)
T ss_pred HHhcCCcEEEEeccCCH
Confidence 88889999999999654
No 138
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.34 E-value=1.4e-06 Score=79.67 Aligned_cols=44 Identities=39% Similarity=0.536 Sum_probs=39.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
+|.+|+++|.+|+||||++..|...|..+|.+|.++|.|..|.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 47899999999999999999999999999999999999987744
No 139
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.33 E-value=9.3e-07 Score=88.23 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=57.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc----hhHHHHHHHhhhhcCCCe---ecCCCCC--CHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR----PAAIDQLVILGEQVGVPV---YTAGTEV--KPSQIA 254 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r----p~aidql~~~~~~~gv~v---~~~~~~~--~~~~~l 254 (481)
+++.++|.+||||||++.+|+..|+++| +|++|+.|+.. ++ .|..+.+ ..|.+. ++..... .....+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g-~Ds~~~~--~aGa~~v~~~s~~~~~~~~~~~~l 77 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDG-TDTGRHF--DAGADVVYGLTDGEWVASGRDRSL 77 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCC-CCcHHHH--HCCCcEEEEecCCeEEEEecCCCH
Confidence 4789999999999999999999999999 89999999843 33 1222111 123221 1111000 000112
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCcc
Q 011624 255 KQGLEEAKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 255 ~~~l~~~~~~~~D~VIIDt~G~~~ 278 (481)
.+.+..+. .++|+|||||.+...
T Consensus 78 ~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 78 DDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred HHHHHhhC-cCCCEEEEECCCCCC
Confidence 34444443 579999999998754
No 140
>PRK15494 era GTPase Era; Provisional
Probab=98.33 E-value=1.6e-06 Score=89.26 Aligned_cols=190 Identities=15% Similarity=0.240 Sum_probs=93.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
..-++++|.+||||||+...|. |.++..+..-++ . +.....+ ++.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~k~~---t-----Tr~~~~~--~~~------------------- 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII------GEKLSIVTPKVQ---T-----TRSIITG--IIT------------------- 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh------CCceeeccCCCC---C-----ccCcEEE--EEE-------------------
Confidence 3468889999999999998885 555553322111 0 1010111 111
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhh--hhccCCceEEEEEeCcch-HHH-HHHHHHhhh-cCCeeEEEEcCCCCCCc
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG-QEA-AALVTTFNI-EIGITGAILTKLDGDSR 337 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i--~~~~~p~~vvLVvda~~~-~~~-~~~~~~f~~-~~~i~GvIlnKvD~~~~ 337 (481)
.+++.++++||||.......+...+.+. ......+.+++|+|+..+ .+. ...+..... ...+ -+|+||+|....
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~-IlViNKiDl~~~ 175 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVP-IFLLNKIDIESK 175 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEEhhcCccc
Confidence 1356789999999753222222222111 112245788999998433 111 112222211 1223 478999997433
Q ss_pred -hhHHHHHHHHhC--CCeEEeec--CCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhcccccH
Q 011624 338 -GGAALSVKEVSG--KPIKLVGR--GERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 412 (481)
Q Consensus 338 -~g~~~~~~~~~g--lPV~~ig~--g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~~~~dl 412 (481)
...+...+...+ .++..+.. |.+++++. +.+ ..+.......++++...+...+++..++-.
T Consensus 176 ~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~--------~~L------~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 176 YLNDIKAFLTENHPDSLLFPISALSGKNIDGLL--------EYI------TSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHH--------HHH------HHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 112222222222 23322221 22222211 100 000111122334555666677888888889
Q ss_pred HHHHHHHhhh
Q 011624 413 NDFLKQTRTV 422 (481)
Q Consensus 413 ~~l~~~~~~~ 422 (481)
|.++..+++-
T Consensus 242 e~~~~~~~~E 251 (339)
T PRK15494 242 EQLFLNLQKE 251 (339)
T ss_pred HHHHhhCCcc
Confidence 9999888764
No 141
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.33 E-value=9.9e-06 Score=78.78 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=65.9
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhc-----
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV----- 237 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~----- 237 (481)
..|.++++++.. ++.+++++|++|+||||++..++....++|.+|++++.+--.....+++..++-..
T Consensus 12 ~~LD~~l~gG~~-------~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~ 84 (234)
T PRK06067 12 EELDRKLGGGIP-------FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFL 84 (234)
T ss_pred HHHHHhhCCCCc-------CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHh
Confidence 456777776553 56799999999999999999999887788999999999854333333332222100
Q ss_pred --CCCeecCC------CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 238 --GVPVYTAG------TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 238 --gv~v~~~~------~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
.+.++... ......+.+......+...+++++|||.+..
T Consensus 85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 01111110 0111223333333333334789999999863
No 142
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.33 E-value=1e-05 Score=72.33 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=64.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...|+++|++|+||||++..|. |.++..+..++.... ......+ .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~~----------~~~~~~~-------------------~ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR----------NRIRGIY-------------------T 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCcee----------ceEEEEE-------------------E
Confidence 4579999999999999999886 566664443322100 0000000 0
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHh--hhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~--i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..+++++++||||...........+.. .......+.+++|+|+... +........+...-....+|+||+|...
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 135789999999976432211111110 1112234778999998543 2222222222211123568999999763
No 143
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.31 E-value=6.3e-06 Score=84.08 Aligned_cols=159 Identities=20% Similarity=0.240 Sum_probs=85.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCC-------CCCCHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-------TEVKPSQIAKQ 256 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~-------~~~~~~~~l~~ 256 (481)
.|.+++|.-|+||||+..+|... ..|.++++|-.|.-..+.-..+ . . ..+..++.+. ...+-...+.+
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~l-l-~-~~~~~v~eL~~GCiCCs~~~~l~~~l~~ 79 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQL-I-G-DRATQIKTLTNGCICCSRSNELEDALLD 79 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHH-H-h-CcCceEEEECCCEEEEccCchHHHHHHH
Confidence 48899999999999999999753 4689999999886543321122 1 1 1122222221 11222223333
Q ss_pred HHHHHHcC--CCcEEEEcCCCCccccHHHHHHH---HhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC-eeEEEEc
Q 011624 257 GLEEAKKK--NVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG-ITGAILT 330 (481)
Q Consensus 257 ~l~~~~~~--~~D~VIIDt~G~~~~d~~~~~el---~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~-i~GvIln 330 (481)
.+.....+ .+|+|||+|.|.... ..++..+ ..+...+.-+.++.|+|+............+...+. -.-||+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p-~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCH-HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 33332211 599999999998642 2233322 111222223678999999543221111111111121 1458999
Q ss_pred CCCCCCchhHHHHHHHHh
Q 011624 331 KLDGDSRGGAALSVKEVS 348 (481)
Q Consensus 331 KvD~~~~~g~~~~~~~~~ 348 (481)
|+|.......+.......
T Consensus 159 K~Dl~~~~~~~~~~l~~l 176 (318)
T PRK11537 159 KTDVAGEAEKLRERLARI 176 (318)
T ss_pred ccccCCHHHHHHHHHHHh
Confidence 999765444444444444
No 144
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.29 E-value=6e-06 Score=84.01 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=66.0
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v 241 (481)
..|..+|+ ++.. +.+++.+.|++|+||||++..++....++|.+|++||+.-. .++ .+....|++.
T Consensus 41 ~~LD~~Lg~GGlp-------~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~----~~~--~~a~~lGvd~ 107 (321)
T TIGR02012 41 LSLDLALGVGGLP-------RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA----LDP--VYARKLGVDI 107 (321)
T ss_pred HHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch----hHH--HHHHHcCCCH
Confidence 46677777 5543 56899999999999999999999999999999999998732 122 1344445432
Q ss_pred ---ecCCCCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCCc
Q 011624 242 ---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 242 ---~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~~ 277 (481)
+.... ....+.+ ..+.. .+...+++||||+...+
T Consensus 108 ~~l~v~~p-~~~eq~l-~~~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 108 DNLLVSQP-DTGEQAL-EIAETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHeEEecC-CCHHHHH-HHHHHHhhccCCcEEEEcchhhh
Confidence 11111 1223332 22322 33467999999997654
No 145
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=98.29 E-value=2.2e-06 Score=82.75 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=37.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
-+-|.+.|+|||||||.++.||..|++-+.+|++|..||-.
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 35788889999999999999999999999999999999854
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.29 E-value=8.9e-06 Score=70.06 Aligned_cols=91 Identities=29% Similarity=0.310 Sum_probs=59.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+..+++.|++|+||||++..||..+...+..+.+++++........+.. ....................+..++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999988877778999999976543322211 0011111112233344445555555
Q ss_pred cCCCcEEEEcCCCCccc
Q 011624 263 KKNVDVVIVDTAGRLQI 279 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~ 279 (481)
...+++++||.++....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44569999999988754
No 147
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.29 E-value=3.8e-06 Score=83.28 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
++.+++++|++|+||||++..++...+++|.+|++++.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 4679999999999999999999998888899999999984
No 148
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.28 E-value=3.4e-06 Score=84.79 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=75.0
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCcccc-cc-----ccCCCCEEEEEEc
Q 011624 117 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LV-----FAKSRPTVILLAG 190 (481)
Q Consensus 117 i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~-~~-----~~~~~~~VI~i~G 190 (481)
|.+.|..+|+++.++-++...+.+.+...... ....+.+.+.+.+.|.+..++.... +. .....|.+|+++|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~--~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGIK--EITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCCE--EeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 67789999999999999999998887765321 2345667777777777765543221 11 1235788999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 191 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 191 ~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++|+||||++.+||..| |.. .+|.+|.+|
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 99999999999999888 555 468899887
No 149
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.24 E-value=7.2e-06 Score=88.43 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=69.5
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe-
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV- 241 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v- 241 (481)
.+|.++++++.. +..+++++|++|+||||++..+++..+++|.+|+++..+--. +|+...++..|++.
T Consensus 250 ~~lD~~lgGG~~-------~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~----~~i~~~~~~lg~~~~ 318 (484)
T TIGR02655 250 VRLDEMCGGGFF-------KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR----AQLLRNAYSWGIDFE 318 (484)
T ss_pred HhHHHHhcCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH----HHHHHHHHHcCCChH
Confidence 567777877654 568999999999999999999999999999999999988543 34444444444432
Q ss_pred ----------ecCC-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCC
Q 011624 242 ----------YTAG-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275 (481)
Q Consensus 242 ----------~~~~-~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G 275 (481)
+... ....+.+.+...++.+...+++.|+||+-.
T Consensus 319 ~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 319 EMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1111 122334455555555544567788888743
No 150
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.24 E-value=9e-06 Score=84.61 Aligned_cols=99 Identities=26% Similarity=0.453 Sum_probs=67.2
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
.+|.++|+++.. +..++++.|.+|+||||++..+|..+++.|.+|++++.+-- .+|++..+...|+..-
T Consensus 69 ~eLD~vLgGGi~-------~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 69 EELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHHhhcCCcc-------CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcc
Confidence 577888887654 45799999999999999999999999998999999988732 3455444555554321
Q ss_pred cC--CCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 243 TA--GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 243 ~~--~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
.. ....+. + +.++.+...++++||||.-..
T Consensus 138 ~l~l~~e~~l-e---~I~~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 138 NLYLLAETNL-E---DILASIEELKPDLVIIDSIQT 169 (372)
T ss_pred cEEEEccCcH-H---HHHHHHHhcCCcEEEEcchHH
Confidence 11 011122 2 223333345789999999643
No 151
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.23 E-value=7.8e-06 Score=75.79 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+++.+|+++|.+|+||||++..|+..+...|.+|.+++.|.+|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4578999999999999999999999999889999999999775
No 152
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.23 E-value=5.8e-06 Score=80.51 Aligned_cols=108 Identities=25% Similarity=0.353 Sum_probs=68.6
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhc-----
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV----- 237 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~----- 237 (481)
++|.+.++++.. +..++++.|++|+||||++.+++..+.++|.++.+++.+-.....++++..++...
T Consensus 11 ~~ld~~l~ggi~-------~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~ 83 (230)
T PRK08533 11 DELHKRLGGGIP-------AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLI 83 (230)
T ss_pred eeeehhhCCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhh
Confidence 456666765432 35699999999999999999999988889999999999877666666654332111
Q ss_pred --CCCeecCCC-CC---CHHHHHHHHHHHHHcCCCcEEEEcCCCCc
Q 011624 238 --GVPVYTAGT-EV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 238 --gv~v~~~~~-~~---~~~~~l~~~l~~~~~~~~D~VIIDt~G~~ 277 (481)
.+....... .. .....+...+......++++++||.+...
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 84 SGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred cCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 010111100 11 11233344444443346889999998653
No 153
>PRK09354 recA recombinase A; Provisional
Probab=98.21 E-value=1.3e-05 Score=82.22 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=66.5
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v 241 (481)
..|..+|+ ++.. +.+++.+.|++|+||||++..++....++|.+|++||+.-. .++ .+....|+++
T Consensus 46 ~~LD~~LG~GGip-------~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s----~~~--~~a~~lGvdl 112 (349)
T PRK09354 46 LALDIALGIGGLP-------RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA----LDP--VYAKKLGVDI 112 (349)
T ss_pred HHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc----hHH--HHHHHcCCCH
Confidence 46777788 6553 56899999999999999999999988889999999999742 111 2344445542
Q ss_pred ---ecCCCCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCCc
Q 011624 242 ---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 242 ---~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~~ 277 (481)
+... .....+.+ ..+.. ++....++||||+...+
T Consensus 113 d~lli~q-p~~~Eq~l-~i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 113 DNLLVSQ-PDTGEQAL-EIADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHeEEec-CCCHHHHH-HHHHHHhhcCCCCEEEEeChhhh
Confidence 1111 11233333 22322 34467999999997654
No 154
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.20 E-value=1.6e-05 Score=77.64 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql 230 (481)
..|.++++++.. ++.++++.|++|+||||++..++....++|.+|++++.+-.....++++
T Consensus 8 ~~LD~~l~GG~~-------~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHH
Confidence 356777776654 5689999999999999999999987778899999999986433333433
No 155
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.20 E-value=1.1e-05 Score=82.22 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=65.3
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC-chhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~-rp~aidql~~~~~~~gv~ 240 (481)
..|..+|+ ++.. +.+++.+.|++|+||||++..++....++|.+|++||+.-. .|. +....|++
T Consensus 41 ~~LD~~Lg~GGlp-------~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-------~a~~lGvd 106 (325)
T cd00983 41 LSLDIALGIGGYP-------KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-------YAKKLGVD 106 (325)
T ss_pred HHHHHHhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-------HHHHcCCC
Confidence 46677777 5553 56799999999999999999999999999999999998632 222 23333443
Q ss_pred eecC--CCCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCCc
Q 011624 241 VYTA--GTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 241 v~~~--~~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~~ 277 (481)
.-.. .......+.+ ..++. ++...+++||||+...+
T Consensus 107 ~~~l~v~~p~~~eq~l-~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 107 LDNLLISQPDTGEQAL-EIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHheecCCCCHHHHH-HHHHHHHhccCCCEEEEcchHhh
Confidence 2111 1111233332 22332 24467999999997544
No 156
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.19 E-value=2.3e-05 Score=70.23 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhh---hhcCCCeecCCCCCCHHH-HHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---EQVGVPVYTAGTEVKPSQ-IAKQGLEE 260 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~---~~~gv~v~~~~~~~~~~~-~l~~~l~~ 260 (481)
++++.|++|+||||++..++..+..+|.+|++++.+.........+.... ...+..++.......... ........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976554433321111 111222322222222121 11122222
Q ss_pred HHcCCCcEEEEcCCCCc
Q 011624 261 AKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~ 277 (481)
....+++++|||.+..+
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 33467889999997653
No 157
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.18 E-value=5.7e-05 Score=76.94 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHH---------HHHHH
Q 011624 95 AWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKI---------VRDEL 165 (481)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~L 165 (481)
.+++|...+.-|-+++-.. .-.+.....|++...+.++.+.+.+.... +......+.+. --..|
T Consensus 13 ~~~~L~~~g~~t~~~~~~~--~~~~L~~~~gls~~~~~~i~~~~~~~~~~-----~~~ta~~~~~~~~~~~~isTG~~~L 85 (313)
T TIGR02238 13 DIKKLKSAGICTVNGVIMT--TRRALCKIKGLSEAKVDKIKEAASKIINP-----GFITAFEISQKRKKVLKITTGSQAL 85 (313)
T ss_pred HHHHHHHcCCCcHHHHHhC--CHHHHHHhcCCCHHHHHHHHHHHHhhhcc-----cCccHHHHHHhhccCceeCCCCHHH
Confidence 3455555444444433221 11222344888888888888877665321 12222222111 11467
Q ss_pred HHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHH------HcCCeEEEEeccC-CchhHHHHHHHhhhhcC
Q 011624 166 VKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDV-YRPAAIDQLVILGEQVG 238 (481)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~------~~G~kVlLId~D~-~rp~aidql~~~~~~~g 238 (481)
.++|+++.. ...|+-++|++|+|||+++..++.... ..|.+|++||+.- |+|.-+.++ ++..|
T Consensus 86 D~lLgGGi~-------~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~---a~~~g 155 (313)
T TIGR02238 86 DGILGGGIE-------SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI---AERFG 155 (313)
T ss_pred HHHhCCCCc-------CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH---HHHcC
Confidence 777877654 467999999999999999999986433 2357999999985 677755443 33333
Q ss_pred CCe-------ecCCCCCCHHH---HHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 239 VPV-------YTAGTEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 239 v~v-------~~~~~~~~~~~---~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
++. +.. ...+..+ .+......+...++++||||+-..
T Consensus 156 ~d~~~~l~~i~~~-~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 156 VDPDAVLDNILYA-RAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred CChHHhcCcEEEe-cCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 321 111 1112222 222222233345788999998653
No 158
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.17 E-value=4.5e-06 Score=88.06 Aligned_cols=166 Identities=22% Similarity=0.352 Sum_probs=99.9
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH---------------HHHHHHhhhhcCC---------
Q 011624 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---------------IDQLVILGEQVGV--------- 239 (481)
Q Consensus 185 VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a---------------idql~~~~~~~gv--------- 239 (481)
.|++.|. +.+|||++++.|+..+.++|++|. ||++.- ..|+ .-+...++
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~-----PFK~QNMsLNs~it~~G~EIgraQ~-~QA~Aa~i~p~v~mNPv 76 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVA-----PFKSQNMSLNSAITPGGGEIGRAQA-LQALAAGIEPSVHMNPV 76 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccC-----CCchhhcccccEECCCCcEEehhhh-HHHHHcCCCCccccCCE
Confidence 3566666 999999999999999999999999 997542 1122 11111121
Q ss_pred ----------CeecCCC---CCCHHH-----------HHHHHHHHHHcCCCcEEEEcCCCCccc----cHHH-HHHHHhh
Q 011624 240 ----------PVYTAGT---EVKPSQ-----------IAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAM-MDELKDV 290 (481)
Q Consensus 240 ----------~v~~~~~---~~~~~~-----------~l~~~l~~~~~~~~D~VIIDt~G~~~~----d~~~-~~el~~i 290 (481)
.++..+. ..++.+ .+.+.++.+ ...||+|+++++|.... +..+ .-.++++
T Consensus 77 LLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l-~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~ 155 (486)
T COG1492 77 LLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL-DREYDVVVIEGAGSPAEINLRDRDIANMGVAEI 155 (486)
T ss_pred EEeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh-hhcccEEEEecCCChhhcCcccccccceeeehh
Confidence 1221111 112222 224555554 47899999999987532 1110 1112222
Q ss_pred hhccCCceEEEEEeCcchH---HHHHHHHHh--hhcCCeeEEEEcCCCCCCc--hhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 291 KRVLNPTEVLLVVDAMTGQ---EAAALVTTF--NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 291 ~~~~~p~~vvLVvda~~~~---~~~~~~~~f--~~~~~i~GvIlnKvD~~~~--~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
. ..+++||.|-..|- +..-...-. ..+-.+.|+|+||+.++.. ...+..+.+.+|+|| +|..|..++
T Consensus 156 ~----dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~v--lGv~P~~~~ 229 (486)
T COG1492 156 A----DAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPV--LGVLPYLKD 229 (486)
T ss_pred c----CCCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhhCCee--Eeecccccc
Confidence 2 27889998874431 111111111 2234689999999998765 344566777899999 999988855
No 159
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.15 E-value=1.5e-05 Score=84.96 Aligned_cols=99 Identities=25% Similarity=0.440 Sum_probs=67.3
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
.+|.++++++.. +..++++.|.+|+||||++..++..++++|.+|++++++-. .+|+...++..|...-
T Consensus 67 ~~LD~~LgGGi~-------~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees----~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 67 GELDRVLGGGLV-------PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES----ASQIKLRAERLGLPSD 135 (446)
T ss_pred HHHHHHhcCCcc-------CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc----HHHHHHHHHHcCCChh
Confidence 577888887654 45799999999999999999999999888999999998632 3455444455554221
Q ss_pred c--CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 243 T--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 243 ~--~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
. .....+.. +.++.++..++++||||....
T Consensus 136 ~l~~~~e~~l~----~i~~~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 136 NLYLLAETNLE----AILATIEEEKPDLVVIDSIQT 167 (446)
T ss_pred cEEEeCCCCHH----HHHHHHHhhCCCEEEEechhh
Confidence 1 11112222 233333345789999999753
No 160
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.13 E-value=9.4e-05 Score=76.16 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHH---------HHHH
Q 011624 94 AAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKI---------VRDE 164 (481)
Q Consensus 94 ~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~ 164 (481)
..+++|...+.-|-+++-.. .-.+.....|++..-+.++++...+.... +......+.+. -...
T Consensus 42 ~~~~kL~~~g~~tv~~~~~~--~~~~L~~~~g~s~~~~~ki~~~a~~~~~~-----~~~ta~~~~~~~~~~~~isTG~~~ 114 (344)
T PLN03187 42 GDVKKLQDAGIYTCNGLMMH--TKKNLTGIKGLSEAKVDKICEAAEKLLNQ-----GFITGSDALLKRKSVVRITTGSQA 114 (344)
T ss_pred HHHHHHHHcCCCcHHHHHhC--CHHHHHHhcCCCHHHHHHHHHHHHHhhcc-----cCCcHHHHHhhhccCceecCCcHh
Confidence 45667766665555444221 11222345899999999999887765421 22222222211 1145
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCeEEEEeccC-CchhHHHHH
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~---~---G~kVlLId~D~-~rp~aidql 230 (481)
|.++|+++.. ...|+-++|++|+|||+++..|+..... . +.+|++||..- |+|.-+.++
T Consensus 115 LD~lLgGGi~-------~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i 180 (344)
T PLN03187 115 LDELLGGGIE-------TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI 180 (344)
T ss_pred HHhhcCCCCC-------CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH
Confidence 7777776553 4579999999999999999999865431 2 26999999974 788755544
No 161
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.13 E-value=1.6e-05 Score=74.01 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=37.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 228 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aid 228 (481)
++++.|++|+|||+++..++....++|.+|++++.+.-.....+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 36789999999999999999999899999999999865433333
No 162
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.09 E-value=8.4e-06 Score=74.59 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
|+.++|++|+||||++.+|+..|..+|++|.+|..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5788999999999999999999999999999998764
No 163
>PTZ00035 Rad51 protein; Provisional
Probab=98.08 E-value=0.00015 Score=74.67 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=74.6
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHH---------HHHH
Q 011624 94 AAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKI---------VRDE 164 (481)
Q Consensus 94 ~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~ 164 (481)
..+++|...+.-|-+++-.. .-.+.....|++..-+++|++..++.... +......+.+. -...
T Consensus 34 ~~~~kL~~~g~~t~~~~~~~--~~~~L~~~~gis~~~~~~i~~~~~~~~~~-----~~~ta~~~~~~~~~~~~isTG~~~ 106 (337)
T PTZ00035 34 ADIKKLKEAGICTVESVAYA--TKKDLCNIKGISEAKVEKIKEAASKLVPM-----GFISATEYLEARKNIIRITTGSTQ 106 (337)
T ss_pred HHHHHHHHcCCCcHHHHHhC--CHHHHHHhhCCCHHHHHHHHHHHHHhccc-----CCCCHHHHHHhhccCccccCCcHH
Confidence 34455555454444433221 11222335888888888888877665321 12222222111 1246
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccC-CchhHHHHH
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~------~G~kVlLId~D~-~rp~aidql 230 (481)
|.++|+++.. ...++.++|++|+||||++..|+..... .+.+|++||... |+|..+.++
T Consensus 107 LD~lLgGGi~-------~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i 172 (337)
T PTZ00035 107 LDKLLGGGIE-------TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI 172 (337)
T ss_pred HHHHhCCCCC-------CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH
Confidence 7777776554 4679999999999999999999865542 456898999874 677655444
No 164
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.06 E-value=2.9e-05 Score=75.02 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=44.4
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHH
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQ 229 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidq 229 (481)
.|.++++++.. ++.++++.|++|+|||+++..++...+++ |.+|++++.+.-....+++
T Consensus 7 ~LD~~l~GGip-------~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 7 GLDELLGGGIP-------KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp THHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred hHHHhhcCCCC-------CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 46777766654 56799999999999999999999888888 9999999998543333333
No 165
>PRK04328 hypothetical protein; Provisional
Probab=98.05 E-value=3.9e-05 Score=75.62 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
..|.++++++.. ++.++++.|++|+|||+++..++....++|.++++++.+-..
T Consensus 10 ~~LD~lL~GGip-------~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 10 PGMDEILYGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP 63 (249)
T ss_pred hhHHHHhcCCCc-------CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence 356777776653 467999999999999999999998877889999999998643
No 166
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00011 Score=73.42 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=71.6
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC-CchhHHHHHHHhhhhcCCCee
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~-~rp~aidql~~~~~~~gv~v~ 242 (481)
.|.++||++.. +.+|+=+.|+.|+||||+|..++....+.|.+|.+||+.- ++|.++.++.... ..++.+.
T Consensus 48 ~LD~~LGGGl~-------~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~ 119 (279)
T COG0468 48 ALDEALGGGLP-------RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVS 119 (279)
T ss_pred hHHHHhcCCcc-------cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-hcceeEe
Confidence 56667776554 5678889999999999999999999999999999999986 8999988874331 2334443
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCc
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~ 277 (481)
..+......+.+.. +.....+.+|+||||+...+
T Consensus 120 ~~~~~e~q~~i~~~-~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 120 QPDTGEQQLEIAEK-LARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred cCCCHHHHHHHHHH-HHHhccCCCCEEEEecCccc
Confidence 33222222222222 22222235999999997654
No 167
>PRK12739 elongation factor G; Reviewed
Probab=98.04 E-value=0.0001 Score=82.91 Aligned_cols=144 Identities=20% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+.+-|+++|+.++||||++..|....... .+..-++.. ....|.+ ......|+.+-... ..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~---~~~~D~~-~~E~~rgiti~~~~-------------~~~ 68 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDG---AATMDWM-EQEQERGITITSAA-------------TTC 68 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCC---ccccCCC-hhHhhcCCCcccee-------------EEE
Confidence 45678999999999999999987543211 011101100 0000000 00011122111100 011
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH--HHHHHHHh-hhcCCeeEEEEcCCCCCC-c
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--AAALVTTF-NIEIGITGAILTKLDGDS-R 337 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~--~~~~~~~f-~~~~~i~GvIlnKvD~~~-~ 337 (481)
.++++.+++|||||... .+.++...... .|.+++|+|+..+.. ....+... ..+.++ -+++||+|... .
T Consensus 69 ~~~~~~i~liDTPG~~~----f~~e~~~al~~--~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~~~ 141 (691)
T PRK12739 69 FWKGHRINIIDTPGHVD----FTIEVERSLRV--LDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIGAD 141 (691)
T ss_pred EECCEEEEEEcCCCHHH----HHHHHHHHHHH--hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC
Confidence 24678899999999743 33444433333 378999999965511 11222211 223444 48999999653 2
Q ss_pred -hhHHHHHHHHhCC
Q 011624 338 -GGAALSVKEVSGK 350 (481)
Q Consensus 338 -~g~~~~~~~~~gl 350 (481)
...+..+...++.
T Consensus 142 ~~~~~~~i~~~l~~ 155 (691)
T PRK12739 142 FFRSVEQIKDRLGA 155 (691)
T ss_pred HHHHHHHHHHHhCC
Confidence 2233444455554
No 168
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=98.04 E-value=0.0017 Score=68.78 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=67.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHH--HHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~--~l~~~ 257 (481)
+..+++++|.+|+|||+++.++|..++ ++|++|++++.+.-....... ..+...|++...... .....+ .+..+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~R--l~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGER--LLASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH--HHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456999999999999999999998887 679999999998643222222 234445665432211 222232 23344
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+ .+..+.|-|+++.. . ..+...+..+.... +..-++|||.
T Consensus 271 ~~~l--~~~~l~i~d~~~~t-~-~~i~~~~r~~~~~~-~~~~lvvIDy 313 (421)
T TIGR03600 271 VDRL--SEKDLYIDDTGGLT-V-AQIRSIARRIKRKK-GGLDLIVVDY 313 (421)
T ss_pred HHHH--hcCCEEEECCCCCC-H-HHHHHHHHHHHHhc-CCCCEEEEec
Confidence 4554 34567666766542 1 22333333332221 1223677776
No 169
>PRK04296 thymidine kinase; Provisional
Probab=98.04 E-value=1.2e-05 Score=75.90 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=56.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec--cCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~--D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..+++++|+.|+||||.+..++..+..+|++|+++.. |. |.+. .......|+++... ......+.... +..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~~~-~~~ 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIFEL-IEE 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHHHH-HHh
Confidence 3588999999999999999999999989999998843 43 2221 12233344433221 11222333322 222
Q ss_pred HHcCCCcEEEEcCCCCcc
Q 011624 261 AKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~ 278 (481)
..+++|+|+||.+..+.
T Consensus 75 -~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred -hCCCCCEEEEEccccCC
Confidence 34589999999997763
No 170
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.02 E-value=0.0001 Score=69.95 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE--EeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCML--VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlL--Id~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-++++|..++||||++..|.....+.|..-.. -..|... .....|+.+-.... .+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~---------~E~~rg~Ti~~~~~-------------~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAP---------EEKARGITINTAHV-------------EYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCCh---------hhhhcCccEEeeee-------------Eec
Confidence 47889999999999999998766555432110 0111110 01112332221110 112
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCe--eEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI--TGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i--~GvIlnKvD~~ 335 (481)
.++..+++|||||... +..++..... ..+.+++|+|+..+ ......+... ...++ .-+++||+|..
T Consensus 62 ~~~~~i~~iDtPG~~~----~~~~~~~~~~--~~D~~ilVvda~~g~~~~~~~~~~~~-~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 62 TANRHYAHVDCPGHAD----YIKNMITGAA--QMDGAILVVSATDGPMPQTREHLLLA-RQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCCeEEEEEECcCHHH----HHHHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHH-HHcCCCcEEEEEeCCCCC
Confidence 3566799999999742 3444322222 35888999999543 2222222222 12333 33678999974
No 171
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.02 E-value=1.9e-05 Score=84.40 Aligned_cols=99 Identities=22% Similarity=0.379 Sum_probs=67.1
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
.+|.++++++.. +..++++.|.+|+||||++..++..+.++|.+|++++.+-- .+|+...+...|+..-
T Consensus 81 ~~LD~vLgGGi~-------~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 81 GELDRVLGGGIV-------PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEP 149 (454)
T ss_pred HHHHHHhcCCcc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChH
Confidence 578888887654 46799999999999999999999999988999999998743 3455444444554321
Q ss_pred cC--CCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 243 TA--GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 243 ~~--~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
.. -...+.. .+ ...+...+++++|||.-..
T Consensus 150 ~l~~~~e~~~~-~I---~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 150 NLYVLSETNWE-QI---CANIEEENPQACVIDSIQT 181 (454)
T ss_pred HeEEcCCCCHH-HH---HHHHHhcCCcEEEEecchh
Confidence 11 1112222 22 2333335789999998543
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.00 E-value=4.2e-05 Score=71.72 Aligned_cols=128 Identities=22% Similarity=0.252 Sum_probs=66.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+.|++.|+.|+||||++..|..........-. .. ......+.. ......++..-....... . .
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~-~~---~~~~~~~~~-~~e~~~~~ti~~~~~~~~----------~-~ 66 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGI-EE---TKNAFLDKH-PEERERGITIDLSFISFE----------K-N 66 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHH-HH---HHHCHHHSS-HHHHHCTSSSSSEEEEEE----------B-T
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccc-cc---ccccccccc-chhhhccccccccccccc----------c-c
Confidence 367889999999999999999865532111000 00 000001100 001111221110000000 0 1
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--H---HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~---~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
...+.+.+|||||... ++.++..... .++.+++|+|+..+ . .....+..++ ++ .-|++||+|..
T Consensus 67 ~~~~~i~~iDtPG~~~----f~~~~~~~~~--~~D~ailvVda~~g~~~~~~~~l~~~~~~~--~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHED----FIKEMIRGLR--QADIAILVVDANDGIQPQTEEHLKILRELG--IP-IIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSHH----HHHHHHHHHT--TSSEEEEEEETTTBSTHHHHHHHHHHHHTT---S-EEEEEETCTSS
T ss_pred ccccceeecccccccc----eeecccceec--ccccceeeeecccccccccccccccccccc--cc-eEEeeeeccch
Confidence 3567899999999743 4555544433 45889999999544 2 2233333332 34 56899999976
No 173
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.00 E-value=4.2e-05 Score=70.49 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=63.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
|+++|.+|+||||++..|.......++.....+........ + ...++..... ...+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~-------------~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-E------RERGITIKSG-------------VATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-H------HHcCCCeecc-------------eEEEeeCC
Confidence 67889999999999999986544333333332211111110 0 1112211100 00011235
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+++++||||.......... ... ..+.+++|+|+..+. .....+......-...-+++||+|...
T Consensus 62 ~~~~liDtpG~~~~~~~~~~----~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIR----GLS--VSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHH----HHH--hcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 78999999996532111111 111 357889999985432 222222222221223458899999753
No 174
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.99 E-value=4.6e-05 Score=73.34 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=43.9
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcC------CeEEEEeccC-Cchh
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG------KSCMLVAGDV-YRPA 225 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G------~kVlLId~D~-~rp~ 225 (481)
.+|.++++++.. ...++.++|++|+|||+++..+|......| .+|++++++- +.+.
T Consensus 6 ~~lD~~l~GG~~-------~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~ 68 (226)
T cd01393 6 KALDELLGGGIP-------TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPE 68 (226)
T ss_pred HHHHHHhCCCCc-------CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHH
Confidence 356666765443 457999999999999999999998877777 8999999974 3443
No 175
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.99 E-value=7.4e-05 Score=72.09 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=43.4
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.|.++++++.. ++.++++.|.+|+|||+++..++....++|.+|++++.+--
T Consensus 4 ~LD~~l~gGi~-------~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 4 GLDEMLGGGFP-------EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred hhHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 46667765543 46799999999999999999999888788999999999863
No 176
>PRK00007 elongation factor G; Reviewed
Probab=97.98 E-value=0.00011 Score=82.87 Aligned_cols=141 Identities=21% Similarity=0.231 Sum_probs=72.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+-|+++|..++||||++..|....... .+..-++....-.+...+ ....|+.+-.... .+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~g~v~~~~~~~D~~~~----E~~rg~ti~~~~~-------------~~~ 71 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVN-HKIGEVHDGAATMDWMEQ----EQERGITITSAAT-------------TCF 71 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCc-cccccccCCcccCCCCHH----HHhCCCCEeccEE-------------EEE
Confidence 4678999999999999999987543321 011101100000010000 1112222211110 112
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCCC-
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGDS- 336 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~~- 336 (481)
+.++.+.+|||||... .+.++...+... +.+++|+|+..+ + .....+... ..+. -+++||+|...
T Consensus 72 ~~~~~~~liDTPG~~~----f~~ev~~al~~~--D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~-iv~vNK~D~~~~ 142 (693)
T PRK00007 72 WKDHRINIIDTPGHVD----FTIEVERSLRVL--DGAVAVFDAVGGVEPQSETVWRQADKY--KVPR-IAFVNKMDRTGA 142 (693)
T ss_pred ECCeEEEEEeCCCcHH----HHHHHHHHHHHc--CEEEEEEECCCCcchhhHHHHHHHHHc--CCCE-EEEEECCCCCCC
Confidence 4678899999999753 334444444433 788999998544 2 122222222 2343 48999999643
Q ss_pred ch-hHHHHHHHHhCC
Q 011624 337 RG-GAALSVKEVSGK 350 (481)
Q Consensus 337 ~~-g~~~~~~~~~gl 350 (481)
.. ..+..+.+.++.
T Consensus 143 ~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 143 DFYRVVEQIKDRLGA 157 (693)
T ss_pred CHHHHHHHHHHHhCC
Confidence 22 233445555554
No 177
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=7e-05 Score=83.46 Aligned_cols=143 Identities=22% Similarity=0.244 Sum_probs=82.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCC--eEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~--kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
+-+-|.+.++-.+||||++-.|.++-..-.+ +|. +++++ .+..+| ...-|+.+-.....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g~~~-~D~~e~----EqeRGITI~saa~s------------ 69 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DGAAT-MDWMEQ----EQERGITITSAATT------------ 69 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CCCcc-CCCcHH----HHhcCCEEeeeeeE------------
Confidence 4578999999999999999998654322111 111 00000 111111 12234444322111
Q ss_pred HHHcC-CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-----HHHHHHHHHhhhcCCeeEEEEcCCC
Q 011624 260 EAKKK-NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIEIGITGAILTKLD 333 (481)
Q Consensus 260 ~~~~~-~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-----~~~~~~~~~f~~~~~i~GvIlnKvD 333 (481)
+.|+ ++.+.||||||..+ ++.|+...++++ |.+++|+|+..| ....+++..++ + ..-+++||+|
T Consensus 70 -~~~~~~~~iNlIDTPGHVD----Ft~EV~rslrvl--DgavvVvdaveGV~~QTEtv~rqa~~~~--v-p~i~fiNKmD 139 (697)
T COG0480 70 -LFWKGDYRINLIDTPGHVD----FTIEVERSLRVL--DGAVVVVDAVEGVEPQTETVWRQADKYG--V-PRILFVNKMD 139 (697)
T ss_pred -EEEcCceEEEEeCCCCccc----cHHHHHHHHHhh--cceEEEEECCCCeeecHHHHHHHHhhcC--C-CeEEEEECcc
Confidence 1245 48999999999875 666776666665 788999999655 23334444332 2 2458899999
Q ss_pred CC-Cchh-HHHHHHHHhCCCeE
Q 011624 334 GD-SRGG-AALSVKEVSGKPIK 353 (481)
Q Consensus 334 ~~-~~~g-~~~~~~~~~glPV~ 353 (481)
.. .... ....+...++.++.
T Consensus 140 R~~a~~~~~~~~l~~~l~~~~~ 161 (697)
T COG0480 140 RLGADFYLVVEQLKERLGANPV 161 (697)
T ss_pred ccccChhhhHHHHHHHhCCCce
Confidence 53 3333 33556666766443
No 178
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=4.3e-05 Score=66.67 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=63.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-----G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~ 256 (481)
..+++++.|++|+|||+++..++..+... ..+|+.+++.... ...+-........+.+... .....+....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHHHHHHH
Confidence 35689999999999999999999988754 6788888887665 1111222334444544433 2344555544
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
..+.+......++|||-+-.+. +...+..+..+.+
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred HHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence 4444443344589999987653 4556666655555
No 179
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.95 E-value=0.00032 Score=69.48 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~l~~~l~ 259 (481)
+..+++++|++|+||||++..++..++.+ |.+|++++++.-.......+ .+...++++...+. .....+.+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRL--LGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHH--HHHHhCCCcccCCccccccHHHHHHHHH
Confidence 35689999999999999999999988877 99999999986322222221 12223444322111 1111223334444
Q ss_pred HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.+. ..-.+.++|.++... -..+...+..+.... ..-++|+|.
T Consensus 107 ~~~-~~~~l~i~d~~~~~~-~~~i~~~i~~~~~~~--~~~~vvID~ 148 (271)
T cd01122 107 EFE-GTGRLFMYDSFGEYS-MDSVLEKVRYMAVSH--GIQHIIIDN 148 (271)
T ss_pred Hhc-CCCcEEEEcCCCccC-HHHHHHHHHHHHhcC--CceEEEECC
Confidence 442 223467778776532 223444444333322 233788887
No 180
>PRK08760 replicative DNA helicase; Provisional
Probab=97.94 E-value=0.0028 Score=68.34 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..+++++|.+|+||||++.++|...+ +.|++|++++.+.-.......+ .+...+++...... .+...++ +..+
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl--~a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRL--ISSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHH--HHhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 457999999999999999999998876 4599999998886544433322 22333444322221 2233332 3345
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+. +..+.|-|+++.. -..+...+..+..... .-++|+|.
T Consensus 306 ~~~l~--~~~l~I~d~~~~t--~~~I~~~~r~l~~~~~--~~lVvIDy 347 (476)
T PRK08760 306 IKMLK--ETKIFIDDTPGVS--PEVLRSKCRRLKREHD--LGLIVIDY 347 (476)
T ss_pred HHHHh--cCCEEEeCCCCCC--HHHHHHHHHHHHHhcC--CCEEEEec
Confidence 55543 4567777777643 2233344444433222 23677776
No 181
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.93 E-value=2.9e-05 Score=72.21 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
.+.++.++|++|+||||++.+|...|..+|++|..|-.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 56699999999999999999999999999999999965
No 182
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.93 E-value=0.00025 Score=68.91 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=37.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~ 222 (481)
+..+++++|++|+||||++..++..++.+ |.+|++++++--
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 45799999999999999999999988877 999999999864
No 183
>PRK06696 uridine kinase; Validated
Probab=97.92 E-value=3.6e-05 Score=74.46 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
.+|.+|+++|.+|+||||++..|+..|...|.+|..+..|-|-.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 36789999999999999999999999998899999999998753
No 184
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.91 E-value=0.00023 Score=68.85 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=43.3
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..|.++++++.. +..++++.|++|+||||++..++....++|.+|++++.+..
T Consensus 7 ~~LD~~l~GGi~-------~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 7 EGLDKLLEGGIP-------RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred hhHHHhhcCCCc-------CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 356667765543 46799999999999999999999877778999999998754
No 185
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.90 E-value=1.8e-05 Score=75.87 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=35.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
-+++||+|+||||-+..+...|...|++|++|..||-.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 46789999999999999999999999999999999853
No 186
>PRK05439 pantothenate kinase; Provisional
Probab=97.90 E-value=5.9e-05 Score=76.52 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~ 222 (481)
+.|.+|.++|++||||||++..|+..|.+ .|.+|.+|..|-|
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 46889999999999999999999998876 3789999999987
No 187
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.90 E-value=0.00023 Score=63.29 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhh--hhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCCch
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i--~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~ 338 (481)
.++++.|+||||...........+... ......+.+++|+|+... .......+.....-...-+|+||+|.....
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChH
Confidence 357799999999865322111111111 111234788999998432 111122222221112356899999976543
No 188
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.89 E-value=0.00017 Score=74.39 Aligned_cols=120 Identities=14% Similarity=0.222 Sum_probs=67.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhc---CCCeecCCC---CCCHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGT---EVKPSQIAKQG 257 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~---gv~v~~~~~---~~~~~~~l~~~ 257 (481)
.|.+++|--|+||||+..+|... .+|.++++|-.|.-..+.-..+..-.... .-.++.+.. .....+-+...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 38899999999999999999753 46899999999865433212221110000 002222221 11112223344
Q ss_pred HHHHH--cCCCcEEEEcCCCCccccHHHHHHHH--hhhhccCCceEEEEEeCc
Q 011624 258 LEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 258 l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~--~i~~~~~p~~vvLVvda~ 306 (481)
+..+. ...+|+|||+|.|... ...+...+. .+...+.-+.++.|||+.
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~-P~~i~~~~~~~~l~~~~~l~~vvtvVDa~ 134 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLAL-PKPLVQAFQWPEIRSRVTVDGVVTVVDGP 134 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCC-HHHHHHHhcCccccceEEeeeEEEEEECc
Confidence 44442 2568999999999863 223333321 111222336789999985
No 189
>PRK05973 replicative DNA helicase; Provisional
Probab=97.88 E-value=0.00011 Score=71.82 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=39.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 229 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidq 229 (481)
+..++++.|.+|+||||++..++...+++|.+|++++.+--.....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 456899999999999999999999888889999999998654333333
No 190
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.87 E-value=0.00019 Score=73.17 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=60.5
Q ss_pred HCCCChHHHHHHHHHHHHHHhhccccCCCChhHHH--------HHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQL--------VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 123 ~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
..|++.+.+.++.+......... ...++.+.. .......+..+++++.. .+.++.++|++|+
T Consensus 44 ~~g~~~~~a~~l~~~a~~~~~~~---~~~t~~~l~~~~ks~~~~~Tg~~~lD~~l~GGi~-------~g~vtei~G~~Gs 113 (317)
T PRK04301 44 AAGIGESTAAKIIEAAREAADIG---GFETALEVLERRKNVGKITTGSKELDELLGGGIE-------TQSITEFYGEFGS 113 (317)
T ss_pred hcCCCHHHHHHHHHHHHHhhccc---cCccHHHHHHhhccCCccCCCCHHHHHHhcCCcc-------CCcEEEEECCCCC
Confidence 34777788888877765432110 001111100 11112455666665443 4679999999999
Q ss_pred CHHHHHHHHHHHHHHc------CCeEEEEeccC-CchhHHHHH
Q 011624 195 GKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 195 GKTTta~~LA~~L~~~------G~kVlLId~D~-~rp~aidql 230 (481)
|||+++..++...... +.+|++||++- |++..+.+.
T Consensus 114 GKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 114 GKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 9999999999766532 35899999985 677655443
No 191
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.87 E-value=7.2e-05 Score=67.22 Aligned_cols=46 Identities=33% Similarity=0.543 Sum_probs=41.8
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
++.-+|.++|.+|+||||+++.|..+|.++|+-...+|+|..|-+.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 3567999999999999999999999999999999999999877554
No 192
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.85 E-value=0.008 Score=63.94 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
++.+++++|.+|+||||++.++|..++. .|++|++++.+.-.......+ .+...+++...... .+...+. +..+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~--~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRM--LSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 4579999999999999999999998775 699999999997544433332 23334555322211 2233332 3344
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
...+. +..+.|-|+++.. -..+...+..+..... .-++|+|.
T Consensus 272 ~~~l~--~~~l~i~d~~~~~--~~~i~~~i~~~~~~~~--~~~vvID~ 313 (434)
T TIGR00665 272 AGKLS--EAPLYIDDTPGLT--ITELRAKARRLKREHG--LGLIVIDY 313 (434)
T ss_pred HHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhcC--CCEEEEcc
Confidence 44442 3456666766532 1223333333333222 23677776
No 193
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.85 E-value=0.00011 Score=72.07 Aligned_cols=40 Identities=38% Similarity=0.648 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
+|+++|.+||||||++..|+.+|...|.+|.+++.|..|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 4789999999999999999999998899999999887653
No 194
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.85 E-value=0.00012 Score=74.81 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCC-------CCCCHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-------TEVKPSQIAKQG 257 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~-------~~~~~~~~l~~~ 257 (481)
|.+++|-=|+||||+..+|..... |+|+++|-.+.--.+ +|. ...-...+.+++... -..+....+.+.
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvg-ID~-~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L 78 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVG-IDG-GALLSDTGEEVVELTNGCICCTVRDDLLPALERL 78 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCcccc-ccC-CCccccCCccEEEeCCceEEEeccchhHHHHHHH
Confidence 788999999999999999976555 899999887743222 221 000111122222111 111233334444
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHh---hhhccCCceEEEEEeCcchHH-HHHHHHHhhhcCCe-eEEEEcCC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD---VKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKL 332 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~---i~~~~~p~~vvLVvda~~~~~-~~~~~~~f~~~~~i-~GvIlnKv 332 (481)
.. . .+.+|+|||+|.|..+. ......+.. +...+.-+.++-|||+..... .......+...+.. .-||+||.
T Consensus 79 ~~-~-~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~ 155 (323)
T COG0523 79 LR-R-RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKT 155 (323)
T ss_pred Hh-c-cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecc
Confidence 44 3 35699999999998653 122222211 112222367899999943321 11122222222222 34899999
Q ss_pred CCCCchh
Q 011624 333 DGDSRGG 339 (481)
Q Consensus 333 D~~~~~g 339 (481)
|......
T Consensus 156 Dlv~~~~ 162 (323)
T COG0523 156 DLVDAEE 162 (323)
T ss_pred cCCCHHH
Confidence 9765543
No 195
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.85 E-value=0.00025 Score=72.02 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=44.4
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccC-CchhHHHHH
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~------~G~kVlLId~D~-~rp~aidql 230 (481)
..+.++|+++.. .+.++.++|++|+||||++..+|...+. .+.+|++||++- |++..+.++
T Consensus 82 ~~lD~~l~GGi~-------~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 82 KELDELLGGGIE-------TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 345566666543 4679999999999999999999876542 123899999885 676654433
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.85 E-value=0.0003 Score=73.70 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=72.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.+|+++|.+.|||||+-..|+ |.++++|+-=+ +. +. -.++. .+++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~p---Gv-----TR-----Dr~y~----------------~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDTP---GV-----TR-----DRIYG----------------DAEW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeecCC---CC-----cc-----CCccc----------------eeEE
Confidence 478999999999999999998 88888664322 21 00 01111 1134
Q ss_pred CCCcEEEEcCCCCcccc-HHHHHHHHhhhh--ccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQID-KAMMDELKDVKR--VLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d-~~~~~el~~i~~--~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.+..+.+|||+|.-..+ ..+..++.+-.. .-..|-++||+|+..| ..-...++.+...-...-+++||+|..
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 66779999999987544 334444332221 2235888999999554 111223333333324566899999986
No 197
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0012 Score=67.83 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=97.1
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCc-hh--------------------HHHHHH----Hhh
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR-PA--------------------AIDQLV----ILG 234 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~r-p~--------------------aidql~----~~~ 234 (481)
+.+++.|. .++|+|=||+|.++|..++. .+..|.|+|.|.+- .+ -.||.- ...
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 45677775 55999999999999999985 48999999999642 11 111110 000
Q ss_pred hhcCCCeecCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-
Q 011624 235 EQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG- 308 (481)
Q Consensus 235 ~~~gv~v~~~~~~~~~-----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~- 308 (481)
-..|..++........ .......++.++ ..||+||+|-| +.+......+ +. ..+++++|++.+..
T Consensus 183 ~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp---~~~~~~t~~v---L~--~Sd~iviv~e~sl~s 253 (366)
T COG4963 183 LASGLKLLAAPTELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLP---NIWTDWTRQV---LS--GSDEIVIVAEPSLAS 253 (366)
T ss_pred cCCCceeecCCcchhhhcccccchHHHHHHHhh-ccCCeEEEcCC---CccchHHHHH---Hh--cCCeEEEEecccHHH
Confidence 1123334333221111 112344555553 68999999999 2333333332 22 24889999887432
Q ss_pred ----HHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCe
Q 011624 309 ----QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (481)
Q Consensus 309 ----~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV 352 (481)
.+..+.+++++.+-...-.|+||++...... ...+.+.+|++-
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~-~~dl~~~~~i~~ 300 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE-PSDLEEILGIES 300 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC-HHHHHHHhCCch
Confidence 4555666777665556668999998665544 445666667665
No 198
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.84 E-value=0.00048 Score=77.60 Aligned_cols=143 Identities=21% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId-~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
+-+-|+++|+.++||||++..|....... .+..-++ .+.+ -+...+ ....|+.+-... ..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~~~-~D~~~~----e~~rgiti~~~~-------------~~ 69 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGAAT-MDWMEQ----EKERGITITSAA-------------TT 69 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCccc-cCCCHH----HHhcCCCEecce-------------EE
Confidence 34688999999999999999987532211 0111000 0000 000000 011222221110 01
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHh-hhcCCeeEEEEcCCCCCC-
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDS- 336 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f-~~~~~i~GvIlnKvD~~~- 336 (481)
+.++++.+.+|||||.... ..++...... .+.+++|+|+..+. .....+... ....+ .-+++||+|...
T Consensus 70 ~~~~~~~i~liDTPG~~~~----~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 142 (689)
T TIGR00484 70 VFWKGHRINIIDTPGHVDF----TVEVERSLRV--LDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGA 142 (689)
T ss_pred EEECCeEEEEEECCCCcch----hHHHHHHHHH--hCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence 1246788999999998542 2233222332 37889999996542 111222211 12233 347899999643
Q ss_pred chh-HHHHHHHHhCC
Q 011624 337 RGG-AALSVKEVSGK 350 (481)
Q Consensus 337 ~~g-~~~~~~~~~gl 350 (481)
... .+..+...++.
T Consensus 143 ~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 143 NFLRVVNQIKQRLGA 157 (689)
T ss_pred CHHHHHHHHHHHhCC
Confidence 323 33445555554
No 199
>PRK13351 elongation factor G; Reviewed
Probab=97.84 E-value=0.0004 Score=78.25 Aligned_cols=145 Identities=20% Similarity=0.205 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+-|++.|..|+||||++..|......- .+..-++...+-.+.... ....++.+.... ..+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~-~~~~~v~~~~~~~d~~~~----e~~r~~ti~~~~-------------~~~~ 69 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKI-HKMGEVEDGTTVTDWMPQ----EQERGITIESAA-------------TSCD 69 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCc-cccccccCCcccCCCCHH----HHhcCCCcccce-------------EEEE
Confidence 4678899999999999999887532110 011101100000010000 011112111000 0112
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCC-ch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDS-RG 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~-~~ 338 (481)
+.++.+.++||||... ...+....... .+.+++|+|+..+. .......... ..+++ -+++||+|... ..
T Consensus 70 ~~~~~i~liDtPG~~d----f~~~~~~~l~~--aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~~~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHID----FTGEVERSLRV--LDGAVVVFDAVTGVQPQTETVWRQADRYGIPR-LIFINKMDRVGADL 142 (687)
T ss_pred ECCEEEEEEECCCcHH----HHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEECCCCCCCCH
Confidence 3577899999999753 22333333332 37889999995542 2222222222 23333 47999999543 33
Q ss_pred h-HHHHHHHHhCCCe
Q 011624 339 G-AALSVKEVSGKPI 352 (481)
Q Consensus 339 g-~~~~~~~~~glPV 352 (481)
. .+..+...++.++
T Consensus 143 ~~~~~~i~~~l~~~~ 157 (687)
T PRK13351 143 FKVLEDIEERFGKRP 157 (687)
T ss_pred HHHHHHHHHHHCCCe
Confidence 3 3355666677654
No 200
>PRK06526 transposase; Provisional
Probab=97.83 E-value=6.4e-05 Score=74.33 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=53.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+.-++++|++|+|||+++.+|+..+.++|++|.++.+. ..++++... . ..+ . ....+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~-~-------~~~---~----~~~~l~~l- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAA-H-------HAG---R----LQAELVKL- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHH-H-------hcC---c----HHHHHHHh-
Confidence 34588999999999999999999999999999864442 233333211 0 000 1 11223343
Q ss_pred cCCCcEEEEcCCCCccccHHH
Q 011624 263 KKNVDVVIVDTAGRLQIDKAM 283 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~ 283 (481)
.++|++|||..|....+...
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred -ccCCEEEEcccccCCCCHHH
Confidence 57899999999987654433
No 201
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.82 E-value=5.7e-05 Score=73.29 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=67.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---hhhhcCCC----eecCCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGEQVGVP----VYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---~~~~~gv~----v~~~~~~~~~~~~l~~~l 258 (481)
++++|..|+||||++..+.......|.-......|.++-.. +...+ .....|.. +.+...... .. ...
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~-~~---~~~ 76 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHL-SE---SDI 76 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCcc-cc---ccc
Confidence 56779999999999999986444445555544444332110 00000 00011111 011000000 00 000
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~ 335 (481)
+.....++.+.+|||||.-. ...++........++.+++|+|+..+ ......+... ..+.+ .-+++||+|..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~----~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~ 151 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHER----YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLA 151 (224)
T ss_pred eeeeeCCcEEEEEECCCcHH----HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECcccc
Confidence 11122467789999999632 33333222221246888999998433 2212222211 12234 45889999964
No 202
>PRK09165 replicative DNA helicase; Provisional
Probab=97.81 E-value=0.0045 Score=67.10 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=80.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc---------------CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT 246 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~---------------G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~ 246 (481)
+..+++++|.+|+||||++.++|...+++ |.+|+++....-....... ..+...+++......
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R--~la~~s~v~~~~i~~ 293 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR--ILSEQSEISSSKIRR 293 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH--HHHHhcCCCHHHHhc
Confidence 45689999999999999999999877643 7899999888654443332 234445665533222
Q ss_pred -CCCHHHH--HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc---c------h----HH
Q 011624 247 -EVKPSQI--AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T------G----QE 310 (481)
Q Consensus 247 -~~~~~~~--l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~---~------~----~~ 310 (481)
.+...+. +.++...+ ....+.|-|+++.. -..+...+.++..... .-++|||.. . . +.
T Consensus 294 ~~l~~~e~~~l~~a~~~l--~~~~l~I~d~~~~t--i~~i~~~ir~l~~~~~--~~lvvIDyLqli~~~~~~~~~~r~~e 367 (497)
T PRK09165 294 GKISEEDFEKLVDASQEL--QKLPLYIDDTPALS--ISQLRARARRLKRQHG--LDLLVVDYLQLIRGSSKRSSDNRVQE 367 (497)
T ss_pred CCCCHHHHHHHHHHHHHH--hcCCeEEeCCCCCC--HHHHHHHHHHHHHhcC--CCEEEEcchHhccCCCCCCCCchHHH
Confidence 2233332 23344444 34556666666542 1233333333333222 125666641 0 0 11
Q ss_pred ---HHHHHHHhhhcCCeeEEEEcCCC
Q 011624 311 ---AAALVTTFNIEIGITGAILTKLD 333 (481)
Q Consensus 311 ---~~~~~~~f~~~~~i~GvIlnKvD 333 (481)
....++.+....++.-+++..+.
T Consensus 368 v~~is~~LK~lAkel~ipVi~lsQLn 393 (497)
T PRK09165 368 ISEITQGLKALAKELNIPVIALSQLS 393 (497)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeccc
Confidence 22333556667778778877765
No 203
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.80 E-value=0.00029 Score=66.51 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCcccc---HHHHHHHHhhhhc--cCCceEEEEEeCcc-hHH---HHHHHH-Hhhhc-CCeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT-GQE---AAALVT-TFNIE-IGITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d---~~~~~el~~i~~~--~~p~~vvLVvda~~-~~~---~~~~~~-~f~~~-~~i~GvIlnKv 332 (481)
.+..+.||||||..... .....++...... ..++.+++|+++.. .++ +++.++ .|.+. ....-+++|+.
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 45679999999987542 2334444433322 24577899998742 222 222222 23322 23456889999
Q ss_pred CCC
Q 011624 333 DGD 335 (481)
Q Consensus 333 D~~ 335 (481)
|.-
T Consensus 127 d~l 129 (196)
T cd01852 127 DDL 129 (196)
T ss_pred ccc
Confidence 964
No 204
>PRK08233 hypothetical protein; Provisional
Probab=97.79 E-value=6.8e-05 Score=69.35 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
++.+|+++|++|+||||++..|+..|. +..+...|.+-
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEE
Confidence 357999999999999999999998774 23555555553
No 205
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.78 E-value=0.00013 Score=70.69 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=40.1
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeccC
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 221 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~------G~kVlLId~D~ 221 (481)
.|.++++++.. +..++.++|++|+||||++..++...... +.+|++++++.
T Consensus 7 ~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 7 ALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhHhhccCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45666776553 46799999999999999999998765433 47999999975
No 206
>PRK07667 uridine kinase; Provisional
Probab=97.77 E-value=6.2e-05 Score=71.22 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+.+|.++|.+|+||||++..|+..|.+.|.+|.+++.|-|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 34799999999999999999999999999999999999975
No 207
>PRK05748 replicative DNA helicase; Provisional
Probab=97.77 E-value=0.0043 Score=66.39 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCC-CCCCHHH--HHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ--IAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~-~~~~~~~--~l~~~ 257 (481)
+..+++++|.+|+||||++.++|...+ +.|++|++++.+.-.......+ .+...+++..... ..+...+ .+..+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~--l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM--LCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH--HHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 456999999999999999999998876 4699999999887544333322 2223344432211 1223333 23445
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+ .+..+.|-|+++.. . ..+...+..+.... +..-++|||.
T Consensus 280 ~~~l--~~~~~~i~d~~~~t-i-~~i~~~~r~~~~~~-~~~~~vvIDy 322 (448)
T PRK05748 280 MGSL--SDAPIYIDDTPGIK-V-TEIRARCRRLAQEH-GGLGLILIDY 322 (448)
T ss_pred HHHH--hcCCEEEECCCCCC-H-HHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 5554 34556666776642 1 23334444443322 1123677776
No 208
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.76 E-value=9.9e-05 Score=70.07 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc---hhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r---p~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~ 257 (481)
..|.++++.|.+|+||||++..+...+. +....+|++|.+| |.+.+-... ... ...... ......+....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~-~~~~~~---~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKA-DPD-EASELT---QKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHH-HCC-CTHHHH---HHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhh-hhh-hhHHHH---HHHHHHHHHHH
Confidence 5799999999999999999998876665 6677889999998 444332211 100 000000 00112234455
Q ss_pred HHHHHcCCCcEEEEcCCCCc
Q 011624 258 LEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~ 277 (481)
++.+...++++| +||....
T Consensus 86 ~~~a~~~~~nii-~E~tl~~ 104 (199)
T PF06414_consen 86 IEYAIENRYNII-FEGTLSN 104 (199)
T ss_dssp HHHHHHCT--EE-EE--TTS
T ss_pred HHHHHHcCCCEE-EecCCCC
Confidence 666655677654 5887653
No 209
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.76 E-value=0.001 Score=75.79 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCCCCch
Q 011624 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~~~~ 338 (481)
.+|++||+|+|.+.. +..++..+.+-.+ .+++||++...| ...+-.++.. ...+.+.|||+|.-+ +
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~----lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~----~ 255 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQCDLYRPLR----LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG----L 255 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCHHHHHHHhC----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc----c
Confidence 579999999988754 2334444443333 789999998544 2332222222 346789999999432 2
Q ss_pred hHHHHHHHH--hCCCeEEeecCC
Q 011624 339 GAALSVKEV--SGKPIKLVGRGE 359 (481)
Q Consensus 339 g~~~~~~~~--~glPV~~ig~g~ 359 (481)
.....+... .++||.-++..|
T Consensus 256 ~N~~~l~~~~~~~~pv~~lp~~p 278 (817)
T PLN02974 256 SNEKALLSYLSNRVPVFVLPPVP 278 (817)
T ss_pred chHHHHHHHHhcCCcEEeCCCCC
Confidence 222222232 399995554433
No 210
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.76 E-value=3.8e-05 Score=74.62 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+++.++|.+|+||||++.+|+..|.++|++|.++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 48899999999999999999999999999999994
No 211
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.74 E-value=0.00029 Score=69.64 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=48.2
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~ 231 (481)
|.++++++.. +..+++++|.+|+|||+++.+.+...++.|.+|++|+.|--.....+++.
T Consensus 12 lD~~l~GG~p-------~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 12 LDEILGGGLP-------RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred hHHHhcCCCc-------CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 4555555443 46799999999999999999999999999999999999976555555443
No 212
>PRK05595 replicative DNA helicase; Provisional
Probab=97.74 E-value=0.0065 Score=64.95 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHH--HHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~--~l~~~ 257 (481)
+..+++++|.+|+||||++.++|..++ ++|++|++++.+.-...... +..+...+++...... .....+ .+.++
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~--R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~ 277 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY--KLLCSEANVDMLRLRTGNLEDKDWENIARA 277 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH--HHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 356889999999999999999998766 67999999988864332222 2334555666543322 122222 23344
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
...+ .+..+-|-|+++.. -..+...+..+..... .-++|||.
T Consensus 278 ~~~l--~~~~l~i~d~~~~t--~~~i~~~~r~~~~~~~--~~~vvIDy 319 (444)
T PRK05595 278 SGPL--AAAKIFIDDTAGVS--VMEMRSKCRRLKIEHG--IDMILIDY 319 (444)
T ss_pred HHHH--hcCCEEEECCCCCC--HHHHHHHHHHHHHhcC--CCEEEEeH
Confidence 4444 23456666776642 1233444444433222 22667775
No 213
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.73 E-value=0.0004 Score=65.65 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
..|+++|.+||||||+...|.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~ 62 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT 62 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 478888999999999998775
No 214
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.72 E-value=0.00021 Score=77.86 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec---cCCc-hhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~---D~~r-p~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~ 257 (481)
+.+-|+++|+.|+||||++-+|..+-.. -.+..-++. +... .++.+ .....|+.+....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~-i~~~g~v~~~~~~~~~~~D~~~----~E~~rgiSi~~~~------------ 71 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGA-IQEAGTVKGRKSGRHATSDWME----MEKQRGISVTSSV------------ 71 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCC-ccccceeeccccCccccCCCcH----HHHhhCCceeeee------------
Confidence 4568999999999999999998643211 011222221 0000 11110 0111222221110
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-HHHHHHHHhh--hcCCeeEEEEcCCCC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFN--IEIGITGAILTKLDG 334 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~~~~~~~f~--~~~~i~GvIlnKvD~ 334 (481)
..+.++++.+.++||||... ...+....+. ..+.+++|+|+..+. .....+..+. .+++ .-+++||+|.
T Consensus 72 -~~~~~~~~~inliDTPG~~d----f~~~~~~~l~--~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~ 143 (526)
T PRK00741 72 -MQFPYRDCLINLLDTPGHED----FSEDTYRTLT--AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDR 143 (526)
T ss_pred -EEEEECCEEEEEEECCCchh----hHHHHHHHHH--HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcc
Confidence 01123577899999999753 2222222222 248899999996542 1111221221 2333 4578999996
Q ss_pred CC-chhH-HHHHHHHhCCCeE
Q 011624 335 DS-RGGA-ALSVKEVSGKPIK 353 (481)
Q Consensus 335 ~~-~~g~-~~~~~~~~glPV~ 353 (481)
.. .... +..+...++.++.
T Consensus 144 ~~a~~~~~l~~i~~~l~~~~~ 164 (526)
T PRK00741 144 DGREPLELLDEIEEVLGIACA 164 (526)
T ss_pred cccCHHHHHHHHHHHhCCCCe
Confidence 43 3333 3556666777653
No 215
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.71 E-value=0.00021 Score=64.59 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
.++++.++||||..... ..... . ....+.+++|+|+..+ ......+.... .+. ..-+|+||+|..
T Consensus 48 ~~~~~~iiDtpG~~~~~-~~~~~---~--~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFT-NMRAR---G--ASLTDIAILVVAADDGVMPQTIEAIKLAKAANV-PFIVALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHH-HHHHH---H--HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEEceecc
Confidence 46789999999964211 11111 1 1234778999998543 22222222221 122 346889999964
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.71 E-value=0.00026 Score=69.52 Aligned_cols=76 Identities=24% Similarity=0.422 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.-+++.|++|+|||+++.++|.++.++|++|+++++. .....++. .. . ...... .+.++.+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~----~l~~~l~~---~~-----~-~~~~~~----~~~l~~l-- 160 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA----DIMSAMKD---TF-----S-NSETSE----EQLLNDL-- 160 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH----HHHHHHHH---HH-----h-hccccH----HHHHHHh--
Confidence 3688999999999999999999999999999988652 22222211 00 0 001111 1334444
Q ss_pred CCCcEEEEcCCCCcc
Q 011624 264 KNVDVVIVDTAGRLQ 278 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~ 278 (481)
..+|++|||..|...
T Consensus 161 ~~~dlLvIDDig~~~ 175 (244)
T PRK07952 161 SNVDLLVIDEIGVQT 175 (244)
T ss_pred ccCCEEEEeCCCCCC
Confidence 479999999998764
No 217
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.70 E-value=0.00018 Score=67.40 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~----------~G~kVlLId~D~~r 223 (481)
..+.+++|++|+||||++..++..+.. ++.+|+++++|--.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 458999999999999999999998886 57899999999653
No 218
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.70 E-value=0.00016 Score=66.54 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+++.++|.+|+||||++.+|+..|..+|++|.+|..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 589999999999999999999999999999999887654
No 219
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.69 E-value=0.00077 Score=63.32 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~ 335 (481)
+++.+.++||||... +......... ..+.+++|+|+..+ .......... ....+ .-+++||+|..
T Consensus 63 ~~~~~~l~DtpG~~~----~~~~~~~~~~--~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHAD----FGGEVERVLS--MVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHH----HHHHHHHHHH--hcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 467789999999743 2222222222 34788999998543 1111222222 22333 45789999974
No 220
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.69 E-value=0.00022 Score=77.59 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC-CchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~-~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
+.+-++++|++|+||||++.+|..+...- .+..-++.+. .+....|.. ......|+.+..... .
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~~-~~E~~rgisi~~~~~-------------~ 74 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDWM-EMEKQRGISITTSVM-------------Q 74 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCCC-HHHHhcCCcEEEEEE-------------E
Confidence 45689999999999999999886432110 1122222111 000111100 111112333221100 0
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-HHHHHHHHHh-h-hcCCeeEEEEcCCCCC-C
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTF-N-IEIGITGAILTKLDGD-S 336 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~~~~~~~f-~-~~~~i~GvIlnKvD~~-~ 336 (481)
+.++++.+.|+||||... +..+....+. ..+.+++|+|+..+ ......+... . ... ..-+++||+|.. .
T Consensus 75 ~~~~~~~inliDTPG~~d----f~~~~~~~l~--~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~-PiivviNKiD~~~~ 147 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHED----FSEDTYRTLT--AVDNCLMVIDAAKGVETRTRKLMEVTRLRDT-PIFTFMNKLDRDIR 147 (527)
T ss_pred EeeCCeEEEEEECCChhh----HHHHHHHHHH--hCCEEEEEEECCCCCCHHHHHHHHHHHhcCC-CEEEEEECccccCC
Confidence 123578899999999742 2233322222 34889999999654 1111122111 1 123 355789999964 3
Q ss_pred chhHH-HHHHHHhCCC
Q 011624 337 RGGAA-LSVKEVSGKP 351 (481)
Q Consensus 337 ~~g~~-~~~~~~~glP 351 (481)
....+ ..+....+.+
T Consensus 148 ~~~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 148 DPLELLDEVENELKIN 163 (527)
T ss_pred CHHHHHHHHHHHhCCC
Confidence 44344 4455556654
No 221
>PRK06762 hypothetical protein; Provisional
Probab=97.68 E-value=0.00015 Score=66.35 Aligned_cols=38 Identities=42% Similarity=0.711 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
|++|+++|++|+||||++..|+..+ |..+.+++.|.+|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 6799999999999999999999877 4568888877654
No 222
>PRK15453 phosphoribulokinase; Provisional
Probab=97.67 E-value=0.00023 Score=71.04 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=39.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
++.+|+++|.+||||||++..|+..|...|.++.+++.|.|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4679999999999999999999999988888999999999864
No 223
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.67 E-value=0.00029 Score=76.49 Aligned_cols=52 Identities=33% Similarity=0.614 Sum_probs=42.0
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
..|.++++++.. ++.++++.|++|+|||+++..++...+++|.+|++++.+-
T Consensus 260 ~~lD~~l~GG~~-------~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 260 PDLDEMLGGGFF-------RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred HHHHHhhcCCCC-------CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 345555544332 4578999999999999999999998889999999998874
No 224
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.67 E-value=0.00017 Score=71.47 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
||.++|.+||||||++.+|+..|.+.|.+|.+|+.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5789999999999999999999999999999999999865
No 225
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.66 E-value=0.00028 Score=74.03 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
=|+++|.++|||||+...|.
T Consensus 161 dValVG~PNaGKSTLln~Lt 180 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS 180 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh
Confidence 47889999999999999886
No 226
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00017 Score=70.04 Aligned_cols=99 Identities=25% Similarity=0.406 Sum_probs=67.4
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCcccc----c--cccCCCCEEEEEEc
Q 011624 117 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE----L--VFAKSRPTVILLAG 190 (481)
Q Consensus 117 i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~----~--~~~~~~~~VI~i~G 190 (481)
+.+.|..+||.+.++-.+.-.+++.+.+.+.. +-..+++.+ ++..+.+--+++... | -.....|.||++.|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~--~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG 96 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGIR--LVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG 96 (299)
T ss_pred HHHHHHhcccChhHHHHHHHHHHHHHHhCCCe--EeeHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhccCCCeEEEecC
Confidence 56789999999999999999998888765532 233455555 444444433332211 1 11234589999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 191 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 191 ~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+||||||++.-||..| |.+- ++.+|.-
T Consensus 97 asGVGkStIA~ElA~rL---gI~~-visTD~I 124 (299)
T COG2074 97 ASGVGKSTIAGELARRL---GIRS-VISTDSI 124 (299)
T ss_pred CCCCChhHHHHHHHHHc---CCce-eecchHH
Confidence 99999999999998766 5443 4677754
No 227
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.66 E-value=0.00031 Score=79.72 Aligned_cols=136 Identities=21% Similarity=0.151 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..|+++|.++|||||+..+|. |.+.. . ++..|+.+...... ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~--------v---------gn~pGvTve~k~g~-------------~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR--------V---------GNWAGVTVERKEGQ-------------FST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc--------c---------CCCCCceEeeEEEE-------------EEc
Confidence 468899999999999999884 32211 0 01122222100000 012
Q ss_pred CCCcEEEEcCCCCccccH----HHHHHH-H-hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDK----AMMDEL-K-DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~----~~~~el-~-~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.++++.++||||...... ...+|. . .....-.++-+++|+|++..+..........+.-...-+++||+|...+
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 467899999999754311 122222 1 1111225688999999965543332222222211235689999997533
Q ss_pred hh---HHHHHHHHhCCCeEEe
Q 011624 338 GG---AALSVKEVSGKPIKLV 355 (481)
Q Consensus 338 ~g---~~~~~~~~~glPV~~i 355 (481)
.+ ....+.+..|.|+..+
T Consensus 128 ~~i~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 128 QNIRIDIDALSARLGCPVIPL 148 (772)
T ss_pred cCcHHHHHHHHHHhCCCEEEE
Confidence 22 2345667789998643
No 228
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.65 E-value=9e-05 Score=65.10 Aligned_cols=71 Identities=20% Similarity=0.090 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCccccHHH---HHHHHhhhhccCCceEEEEEeCcchHHHHHH--HHHhhhcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAM---MDELKDVKRVLNPTEVLLVVDAMTGQEAAAL--VTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~---~~el~~i~~~~~p~~vvLVvda~~~~~~~~~--~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.++++++||||........ ........ ..++.+++|+|+......... ...+.......-+++||+|....
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 6789999999975431111 11111122 235788999998544221111 22222122234589999997654
No 229
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.64 E-value=0.00075 Score=60.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..++++|.+|+||||++..|.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~ 23 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL 23 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh
Confidence 4468899999999999998885
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.64 E-value=0.00024 Score=68.01 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L 207 (481)
-++++|..|+||||++..|....
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 47788999999999999997644
No 231
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.62 E-value=0.00032 Score=60.22 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCccccHHHH--HHHHhhhhc-cCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMM--DELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTK 331 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~--~el~~i~~~-~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnK 331 (481)
.+..+.|+||||......... ....++.+. ...+-+++|+|+... .+....++.+. .-...-+|+||
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 355679999999865422111 112222222 234778999998443 22334444443 33455688887
No 232
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.62 E-value=0.00017 Score=73.44 Aligned_cols=100 Identities=25% Similarity=0.374 Sum_probs=62.7
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC-CchhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~-~rp~aidql~~~~~~~gv~ 240 (481)
..|...|+ ++.. +.+++-+.|++|+||||++..+.+.+.+.|..+++||++- +-|.+ ....|++
T Consensus 39 ~~LD~aLg~GG~p-------~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~-------a~~lGvd 104 (322)
T PF00154_consen 39 PALDYALGIGGLP-------RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY-------AESLGVD 104 (322)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH-------HHHTT--
T ss_pred cccchhhccCccc-------cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH-------HHhcCcc
Confidence 45666676 4332 4579999999999999999999999888999999999963 22332 3334543
Q ss_pred e---ecCCCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCcc
Q 011624 241 V---YTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 241 v---~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIIDt~G~~~ 278 (481)
+ +... .+..+.+.+.++.+ +.+.+|+||||..+.+.
T Consensus 105 l~rllv~~--P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 105 LDRLLVVQ--PDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp GGGEEEEE---SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred ccceEEec--CCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 2 1111 12233333444443 45678999999988775
No 233
>COG4240 Predicted kinase [General function prediction only]
Probab=97.62 E-value=0.00048 Score=66.11 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeccCCchhHHHHH
Q 011624 158 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 158 ~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G-~kVlLId~D~~rp~aidql 230 (481)
.+.+.+....++. ...++.+..++|.|+.++|++|+||||+++.|-..|..+| .+++-...|-+=-...+++
T Consensus 26 ~~~~~dl~Lpll~-Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl 98 (300)
T COG4240 26 AALAQDLHLPLLA-KIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRL 98 (300)
T ss_pred HHHHHHHHHHHHH-hhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHH
Confidence 3444444444433 2333444556799999999999999999999999999888 7999999986543334555
No 234
>PRK09866 hypothetical protein; Provisional
Probab=97.61 E-value=0.0016 Score=71.31 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCcccc-HHHHHHHHhhhhccCCceEEEEEeCcc--hHHHHHHHHHhhhcC--CeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEI--GITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d-~~~~~el~~i~~~~~p~~vvLVvda~~--~~~~~~~~~~f~~~~--~i~GvIlnKvD~~ 335 (481)
.+.+|+|||||..... ..+...+.+. .-..+-+++|+|+.. +.+-...++.....- ...-+|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eq--L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQ--LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHH--HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 5789999999997542 2232333332 223588999999954 222222222222111 1455899999974
No 235
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.61 E-value=0.00081 Score=71.19 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=60.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
|+++|.+||||||+...|. |.+..+++.. |+.. ..... ....+.+
T Consensus 2 i~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~t-----------~d~~~---------------~~~~~~~ 46 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT------GKRDAIVSDT---PGVT-----------RDRKY---------------GDAEWGG 46 (429)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCcceecCC---CCcc-----------cCceE---------------EEEEECC
Confidence 7889999999999998885 3333322111 1100 00000 0001245
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhh--hccCCceEEEEEeCcchH-----HHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~--~~~~p~~vvLVvda~~~~-----~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
..+.|+||||.......+..++.... ..-.++.+++|+|+..+. .....++.. . ...-+|+||+|....
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~-~piilVvNK~D~~~~ 122 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--G-KPVILVANKIDGKKE 122 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--C-CCEEEEEECccCCcc
Confidence 56899999997433222222221111 112357889999995431 122333322 2 234578999997543
No 236
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.60 E-value=0.00076 Score=66.51 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+..|++.|++||||||++..|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHh
Confidence 45678889999999999998876
No 237
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.59 E-value=0.0004 Score=75.01 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=65.3
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCC-
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVP- 240 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~- 240 (481)
..|.++++++.. +++++++.|++|+||||++..++..-+++ |.++++|+.+--......+ +...|.+
T Consensus 8 ~gLD~il~GGlp-------~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~----~~~~G~~~ 76 (484)
T TIGR02655 8 EGFDDISHGGLP-------IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKN----ARSFGWDL 76 (484)
T ss_pred hhHHHhcCCCCC-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHH----HHHcCCCH
Confidence 356777776654 57899999999999999999998765555 9999999998432222222 2222221
Q ss_pred ----------eecCC---------CCCCHHHHHHHHHHHHHcCCCcEEEEcCC
Q 011624 241 ----------VYTAG---------TEVKPSQIAKQGLEEAKKKNVDVVIVDTA 274 (481)
Q Consensus 241 ----------v~~~~---------~~~~~~~~l~~~l~~~~~~~~D~VIIDt~ 274 (481)
++... ...+..+.+......+...+.+.|+||..
T Consensus 77 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 77 QKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred HHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 11110 12344455555555655567899999953
No 238
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.59 E-value=0.002 Score=66.46 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHH---------HHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVK---------IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 124 ~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
.+++..-++++...+.+... .+......+.+ .-...|.++|+++.. ...++.+.|.+|+
T Consensus 67 ~~is~~~~~~~~~~~~~~~~-----~~~~ta~~~~~~~~~~~~i~tG~~~LD~lL~GG~~-------~g~i~~i~G~~g~ 134 (342)
T PLN03186 67 KGISEAKVEKILEAASKLVP-----LGFTTASQLHAQRQEIIQITTGSRELDKILEGGIE-------TGSITEIYGEFRT 134 (342)
T ss_pred cCCCHHHHHHHHHHHHHhcc-----cccchHHHHhhcccCcceeCCCCHHHHHhhcCCCc-------CceEEEEECCCCC
Confidence 67777777777666644321 11111111111 111456666666543 4578999999999
Q ss_pred CHHHHHHHHHHHHH---Hc---CCeEEEEeccC-CchhHHHHH
Q 011624 195 GKTTVSAKLANYLK---KQ---GKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 195 GKTTta~~LA~~L~---~~---G~kVlLId~D~-~rp~aidql 230 (481)
|||+++..|+.... .+ +.+|++||++- |+|.-+.++
T Consensus 135 GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qi 177 (342)
T PLN03186 135 GKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQI 177 (342)
T ss_pred CccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHH
Confidence 99999999986433 12 24899999985 777755554
No 239
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.59 E-value=0.001 Score=63.43 Aligned_cols=109 Identities=26% Similarity=0.362 Sum_probs=73.9
Q ss_pred HHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhc----
Q 011624 162 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV---- 237 (481)
Q Consensus 162 ~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~---- 237 (481)
.++|.+-||+++. -|.++++-|..|.|||-++..+++-+..+|++|.++....---.++.|+....-..
T Consensus 14 ndelDkrLGGGiP-------~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~ 86 (235)
T COG2874 14 NDELDKRLGGGIP-------VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFL 86 (235)
T ss_pred cHHHHhhccCCCc-------cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHH
Confidence 4788888988764 47899999999999999999999999999999999998865556676664322110
Q ss_pred --C-CCeecC--CC-CCC---HHHHHHHHHHHHHcCCCcEEEEcCCCCc
Q 011624 238 --G-VPVYTA--GT-EVK---PSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 238 --g-v~v~~~--~~-~~~---~~~~l~~~l~~~~~~~~D~VIIDt~G~~ 277 (481)
| ..+++. +. ..+ ....+...++..+..+.|++|||+-...
T Consensus 87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~ 135 (235)
T COG2874 87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAF 135 (235)
T ss_pred hcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHH
Confidence 1 112222 11 111 1123344444445568899999996443
No 240
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.59 E-value=0.0011 Score=59.49 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
++.+.++||||.-. ....+... ....+.+++|+|+..+ ........... ......-+++||+|...
T Consensus 50 ~~~~~~~DtpG~~~----~~~~~~~~--~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 50 GKRLGFIDVPGHEK----FIKNMLAG--AGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred CcEEEEEECCChHH----HHHHHHhh--hhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 45789999999632 22222211 2245788999998542 11112111111 12223458899999754
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=97.59 E-value=0.00063 Score=71.62 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE--eccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI--d~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.-++++|..++||||++..|.....+.|..-... ..|.. ......|+.+-.... .+
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~---------~~E~~rg~Ti~~~~~-------------~~ 70 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKA---------PEEKARGITINTAHV-------------EY 70 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCC---------hHHHhcCeEEeeeEE-------------EE
Confidence 3477889999999999999987665554311100 11111 011112222211100 01
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HH---HHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE---AAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~---~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..++..+++|||||.. .+..++.... ...+.+++|+|+..+ .. ....+..+ ..+..-|++||+|...
T Consensus 71 ~~~~~~i~~iDtPG~~----~f~~~~~~~~--~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 71 ETEKRHYAHVDCPGHA----DYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVD 142 (396)
T ss_pred cCCCeEEEEEECCCHH----HHHHHHHhhh--ccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcc
Confidence 1245679999999963 3444443222 345889999999544 11 22222222 2333335789999753
No 242
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.56 E-value=0.00039 Score=69.35 Aligned_cols=104 Identities=29% Similarity=0.449 Sum_probs=57.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec-CCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT-AGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~-~~~~~~~~~~l~~~l~~~~~ 263 (481)
.|+++|.|||||||.+..|+.+|.+.+++|.+|+-|... +. . +. +. ...+......++..+++...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---------~~-~-~~--y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---------ID-R-ND--YADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----------T-T-SS--S--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---------cc-h-hh--hhchhhhHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999999999866332 00 0 01 11 00011112234555555543
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.+ ++||+|..-.. .++-.|+-.+.+.......++-+++
T Consensus 70 ~~-~iVI~Dd~nYi---Kg~RYelyclAr~~~~~~c~i~~~~ 107 (270)
T PF08433_consen 70 KD-TIVILDDNNYI---KGMRYELYCLARAYGTTFCVIYCDC 107 (270)
T ss_dssp T--SEEEE-S---S---HHHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred cC-eEEEEeCCchH---HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 44 89999997554 4677777777776654444444444
No 243
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.56 E-value=0.0001 Score=69.84 Aligned_cols=44 Identities=36% Similarity=0.563 Sum_probs=39.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
++|.+++++|++|+||||++..|+..|..+|..+.+++.|..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 46889999999999999999999999988899999999998763
No 244
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.56 E-value=0.0014 Score=66.11 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=62.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-..++++|.+.|||||+..+|.. ..-.|+ +| +.. .+ ++.+ | ++.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~----AkpEvA-----~Y------PFT--TK--~i~v---G--------------hfe 211 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTT----AKPEVA-----PY------PFT--TK--GIHV---G--------------HFE 211 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhc----CCCccC-----CC------Ccc--cc--ceeE---e--------------eee
Confidence 35788999999999999988851 111222 22 110 11 1111 1 111
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHH--Hhhhhcc-CCceEEEEEeC--cchHHHHHHHHH---hhhcCC-eeEEEEcCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVL-NPTEVLLVVDA--MTGQEAAALVTT---FNIEIG-ITGAILTKLD 333 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el--~~i~~~~-~p~~vvLVvda--~~~~~~~~~~~~---f~~~~~-i~GvIlnKvD 333 (481)
.+...+=+|||||.++....-+.++ ..+.... -.+-+++++|+ ..|.+...|..- ..+.+. ..-+|+||+|
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D 291 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKID 291 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 1344688999999987632222211 1111111 12567899998 344444444432 233333 4668999999
Q ss_pred CC
Q 011624 334 GD 335 (481)
Q Consensus 334 ~~ 335 (481)
..
T Consensus 292 ~~ 293 (346)
T COG1084 292 IA 293 (346)
T ss_pred cc
Confidence 65
No 245
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.56 E-value=0.00036 Score=62.35 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCccccHH-HHHHHHh-hhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCch---h
Q 011624 265 NVDVVIVDTAGRLQIDKA-MMDELKD-VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG---G 339 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~-~~~el~~-i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~---g 339 (481)
+.++.++||||....... .-..+.. ....-..+.+++|+|+................-...-+++||+|..... .
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchh
Confidence 457999999997532110 0011111 1111245888999998554332222222221112345889999964321 1
Q ss_pred HHHHHHHHhCCCeEEe
Q 011624 340 AALSVKEVSGKPIKLV 355 (481)
Q Consensus 340 ~~~~~~~~~glPV~~i 355 (481)
....+....+.|+..+
T Consensus 122 ~~~~~~~~~~~~~~~i 137 (158)
T cd01879 122 DLDKLSELLGVPVVPT 137 (158)
T ss_pred hHHHHHHhhCCCeEEE
Confidence 1234444557776443
No 246
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.56 E-value=0.00061 Score=74.05 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=47.5
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHH
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql 230 (481)
..|.++++++.. ++.++++.|.+|+||||++..++...+++ |.+|++|+++--.....+++
T Consensus 18 ~~LD~~l~GG~p-------~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~ 79 (509)
T PRK09302 18 EGFDDITHGGLP-------KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNV 79 (509)
T ss_pred hhHHHhhcCCCC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHH
Confidence 466777765543 46899999999999999999999877766 99999999997544443433
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=97.56 E-value=0.00097 Score=71.27 Aligned_cols=123 Identities=23% Similarity=0.220 Sum_probs=65.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCe--EEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKS--CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~k--VlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..|++.|..++||||++..|.....+.|.. ...-.+|... . ....|+.+-.... .+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~-~--------E~~rGiTi~~~~~-------------~~ 119 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP-E--------EKARGITIATAHV-------------EY 119 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh-h--------HhhcCceeeeeEE-------------EE
Confidence 457788999999999999998666555542 1111123211 0 1111222111000 01
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..++..+++|||||... ++..+..-. ...|.++||+|+..+ + +.+..+..+ .++..-+++||+|...
T Consensus 120 ~~~~~~i~~iDtPGh~~----f~~~~~~g~--~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~ 191 (447)
T PLN03127 120 ETAKRHYAHVDCPGHAD----YVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVD 191 (447)
T ss_pred cCCCeEEEEEECCCccc----hHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCC
Confidence 12456799999999743 333332222 235889999999543 2 222222222 2222236799999753
No 248
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.55 E-value=0.00061 Score=61.79 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+||||||+...|.
T Consensus 3 v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred eEEECCCCCCHHHHHHHHh
Confidence 6788999999999998885
No 249
>PRK08727 hypothetical protein; Validated
Probab=97.55 E-value=0.00078 Score=65.69 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.+++.|++|+|||+++..++..+.++|++|.++.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 588999999999999999999999999999988753
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.55 E-value=0.0012 Score=63.35 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+..+++.|++|+||||++..++..+.+.|.++.+++++.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 35688899999999999999999988888889998888754
No 251
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.55 E-value=0.00072 Score=76.12 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=65.7
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC-CchhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~-~rp~aidql~~~~~~~gv~ 240 (481)
.+|..+|+ ++.. +.+++.+.|++|+||||++..++....++|.+|++||.+- +++. +++..|++
T Consensus 46 ~~LD~lLg~GGip-------~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-------~A~~lGvD 111 (790)
T PRK09519 46 IALDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-------YAKKLGVD 111 (790)
T ss_pred HHHHHhhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-------HHHHcCCC
Confidence 46777887 5553 4689999999999999999999888888899999999874 3333 33344543
Q ss_pred e---ecCCCCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCC
Q 011624 241 V---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGR 276 (481)
Q Consensus 241 v---~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~ 276 (481)
. +... ..+.+.+...+.. ++...+++||||+...
T Consensus 112 l~~llv~~--~~~~E~~l~~i~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 112 TDSLLVSQ--PDTGEQALEIADMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred hhHeEEec--CCCHHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence 2 1111 1222333233333 3346799999999653
No 252
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.54 E-value=0.00065 Score=68.76 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=69.7
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
++|.++++.-.. .......|++.|.+|+||||+...|. |.+|..+.. |.+. +....
T Consensus 22 ~~l~~~l~~l~~----~~~~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s~------------t~~~~ 77 (313)
T TIGR00991 22 TKLLELLGKLKE----EDVSSLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQSE------------GLRPM 77 (313)
T ss_pred HHHHHHHHhccc----ccccceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCCc------------ceeEE
Confidence 566666653221 12234578899999999999998886 555543221 1110 00000
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCcccc---HHHHHHHHhhhhccCCceEEEEE--eCc-ch---HHHHH
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVV--DAM-TG---QEAAA 313 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d---~~~~~el~~i~~~~~p~~vvLVv--da~-~~---~~~~~ 313 (481)
.... ...+..+.||||||..... ......+........++-+++|. |.. .. ..+.+
T Consensus 78 ~~~~---------------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk 142 (313)
T TIGR00991 78 MVSR---------------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIR 142 (313)
T ss_pred EEEE---------------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHH
Confidence 0000 0146679999999987532 12222233323223467777774 331 11 23333
Q ss_pred HH-HHhhhcC-CeeEEEEcCCCCC
Q 011624 314 LV-TTFNIEI-GITGAILTKLDGD 335 (481)
Q Consensus 314 ~~-~~f~~~~-~i~GvIlnKvD~~ 335 (481)
.+ ..|...+ ...-|++|+.|..
T Consensus 143 ~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 143 AITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHhhhhhhccEEEEEECCccC
Confidence 33 3343322 3356889999954
No 253
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.54 E-value=0.0003 Score=67.75 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L 207 (481)
|+++|+.|+||||++..|....
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~ 23 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLL 23 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHh
Confidence 6788999999999999997543
No 254
>PRK08506 replicative DNA helicase; Provisional
Probab=97.53 E-value=0.017 Score=62.18 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQGL 258 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~l 258 (481)
+..+++++|.+|+|||+++.++|...+++|++|+++..+.-....... ..+...+++...... .+...+. +.+++
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~R--lla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLR--MLSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHH--HHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999888889999999998654333222 233445665433221 2333332 34455
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
..+. +..+.|.|+++.. -..+.+.+.++.... +..-++|||.
T Consensus 269 ~~l~--~~~l~I~d~~~~t--i~~I~~~~r~l~~~~-~~~~lvvIDy 310 (472)
T PRK08506 269 DELS--KKKLFVYDSGYVN--IHQVRAQLRKLKSQH-PEIGLAVIDY 310 (472)
T ss_pred HHHH--cCCeEEECCCCCC--HHHHHHHHHHHHHhC-CCCCEEEEcC
Confidence 5543 4457777776532 122333333333221 1223666776
No 255
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.53 E-value=9.6e-05 Score=68.50 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=37.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++|.+|+++|++|+||||++..|+..|...+..+.+++.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 357899999999999999999999999988888998988754
No 256
>PRK12735 elongation factor Tu; Reviewed
Probab=97.53 E-value=0.0017 Score=68.45 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCE-EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 182 RPT-VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~-VI~i~G~~GvGKTTta~~LA~~L~~~G~-kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
+|. .|++.|..++||||++..|.....+.|. +.. . + ...++. ......|+.+-.....
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~-~----~--~~~d~~-~~E~~rGiT~~~~~~~------------ 69 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAK-A----Y--DQIDNA-PEEKARGITINTSHVE------------ 69 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccc-h----h--hhccCC-hhHHhcCceEEEeeeE------------
Confidence 444 4778899999999999999876555442 111 0 0 001111 1111223322211000
Q ss_pred HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
+..++..+++|||||.. .+...+... ....+.+++|+|+..+ ....+.+.... ..++..-+++||+|..
T Consensus 70 -~~~~~~~i~~iDtPGh~----~f~~~~~~~--~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 70 -YETANRHYAHVDCPGHA----DYVKNMITG--AAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred -EcCCCcEEEEEECCCHH----HHHHHHHhh--hccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 11245568999999963 233443222 2245888999999543 12222222221 1233333468999975
No 257
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.53 E-value=9.8e-05 Score=69.07 Aligned_cols=39 Identities=38% Similarity=0.530 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+|+++|.+||||||++..|+..|...|.++.++..|-|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 578999999999999999999999999999999999764
No 258
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.51 E-value=0.00092 Score=59.29 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCccccHHHHH-HHH-hhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMD-ELK-DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~-el~-~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.++++.++||||.......... .+. ........+.+++|+|+... ......... ... ...-+++||+|....
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~-~~vi~v~nK~D~~~~ 122 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-PAD-KPIIVVLNKSDLLPD 122 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-hcC-CCEEEEEEchhcCCc
Confidence 3567899999997543211100 000 11112245788999998632 222222222 112 234589999997543
No 259
>PRK06749 replicative DNA helicase; Provisional
Probab=97.51 E-value=0.014 Score=62.02 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC---CCCHHHH--HHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQI--AKQ 256 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~---~~~~~~~--l~~ 256 (481)
++.++++.|.+|+|||+++.++|...+++|++|++...+.-....... ..+...+++...... .....++ +.+
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R--~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~ 262 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKR--MASCVGEVSGGRLKNPKHRFAMEDWEKVSK 262 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHH--HHHhccCCCHHHHhcCcccCCHHHHHHHHH
Confidence 456899999999999999999999999889999999888654333222 333444555332211 1233332 345
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
++..+ .+..+-|.|+++..- ..+.+.+.++........-++|||-
T Consensus 263 a~~~l--~~~~i~i~d~~~~t~--~~I~~~~r~~~~~~~~~~~lvvIDy 307 (428)
T PRK06749 263 AFAEI--GELPLEIYDNAGVTV--QDIWMQTRKLKRKHGDKKILIIVDY 307 (428)
T ss_pred HHHHH--hcCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 55554 356677888877532 2244444444432221123667776
No 260
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.51 E-value=0.00088 Score=71.15 Aligned_cols=117 Identities=22% Similarity=0.335 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.|+++|.+||||||+...|. |.+...+... |+. ....... .....
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~~---~~~-----------t~d~~~~---------------~~~~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVADT---PGV-----------TRDRIYG---------------EAEWL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCCC---CCC-----------cccceEE---------------EEEEC
Confidence 57788999999999998885 4443322211 110 0000000 00124
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhh--hccCCceEEEEEeCcchH--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~--~~~~p~~vvLVvda~~~~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
+.++.|+||||....+.....++.... .....+.+++|+|+..+. .....+..+...-...-+++||+|...
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 577999999998642222222222111 122458899999985431 111222222211123458899999644
No 261
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.51 E-value=0.00056 Score=66.74 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeccCCchhHHHHHHHh
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKK------------QGKSCMLVAGDVYRPAAIDQLVIL 233 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~------------~G~kVlLId~D~~rp~aidql~~~ 233 (481)
.+.+++|++|+||||++..+|...+. .+.+|++++++--.....+.+...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 46788999999999999999987652 467899999997554444444333
No 262
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.50 E-value=0.0035 Score=61.86 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=62.7
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
.|.+++++ .. ++.++++.|.+|+|||+++.++|..++.+ |.+|++++.+.-...... +..+...+++..
T Consensus 8 ~LD~~lgG-~~-------~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~--R~la~~s~v~~~ 77 (259)
T PF03796_consen 8 ALDRLLGG-LR-------PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAA--RLLARLSGVPYN 77 (259)
T ss_dssp HHHHHHSS-B--------TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHH--HHHHHHHTSTHH
T ss_pred HHHHHhcC-CC-------cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH--HHHHHhhcchhh
Confidence 45666663 21 45699999999999999999999998887 699999999975443322 234445566543
Q ss_pred cCCC-CCCHHH--HHHHHHHHHHcCCCcEEEEcCCCC
Q 011624 243 TAGT-EVKPSQ--IAKQGLEEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 243 ~~~~-~~~~~~--~l~~~l~~~~~~~~D~VIIDt~G~ 276 (481)
.... ...+.+ .+.++...+ .+..+.|.|+++.
T Consensus 78 ~i~~g~l~~~e~~~~~~~~~~l--~~~~l~i~~~~~~ 112 (259)
T PF03796_consen 78 KIRSGDLSDEEFERLQAAAEKL--SDLPLYIEDTPSL 112 (259)
T ss_dssp HHHCCGCHHHHHHHHHHHHHHH--HTSEEEEEESSS-
T ss_pred hhhccccCHHHHHHHHHHHHHH--hhCcEEEECCCCC
Confidence 2222 122232 223344444 3556777787764
No 263
>PRK07773 replicative DNA helicase; Validated
Probab=97.49 E-value=0.014 Score=67.59 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~ 222 (481)
+..+++++|.+|+|||+++.++|...+. .|.+|+++..+.-
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4568999999999999999999998875 4899999999854
No 264
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.49 E-value=0.00017 Score=68.72 Aligned_cols=40 Identities=35% Similarity=0.530 Sum_probs=35.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+|+++|++||||||++..|+..+ .+..|.+++.|.|-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 57899999999999999999999887 46789999999863
No 265
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.49 E-value=0.0036 Score=63.96 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHH---------HHHHHHHHHhcCccccccccCCCCEEEEEEcCCCC
Q 011624 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVK---------IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (481)
Q Consensus 124 ~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~Gv 194 (481)
.+++..-++++...+.+.... .......+.+ .-...|.++|+++.. ...++.+.|++|+
T Consensus 40 ~~ls~~~~~~~~~~~~~~~~~-----~~~t~~~l~~~~~~~~~~~tg~~~lD~ll~gGi~-------~g~i~~i~G~~g~ 107 (316)
T TIGR02239 40 KGISEAKADKILAEAAKLVPM-----GFTTATEFHQRRQEVIQLTTGSKELDKLLGGGIE-------TGSITEIFGEFRT 107 (316)
T ss_pred hCCCHHHHHHHHHHHHHhccc-----ccccHHHHHhcccccceeCCCCHHHHHHhcCCCC-------CCeEEEEECCCCC
Confidence 677777777777766544211 1111111111 111456776776553 4679999999999
Q ss_pred CHHHHHHHHHHHHH---HcC---CeEEEEeccC-CchhH
Q 011624 195 GKTTVSAKLANYLK---KQG---KSCMLVAGDV-YRPAA 226 (481)
Q Consensus 195 GKTTta~~LA~~L~---~~G---~kVlLId~D~-~rp~a 226 (481)
||||++..++.... ..| .+|++||+.. |++.-
T Consensus 108 GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 108 GKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred CcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 99999999986322 233 4889999875 56653
No 266
>PRK05636 replicative DNA helicase; Provisional
Probab=97.48 E-value=0.02 Score=62.20 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=67.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..+++++|.+|+||||++.++|...+ +.|++|+++....-....... ..+...+++...... .++..++ +.++
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R--~ls~~s~v~~~~i~~g~l~~~e~~~~~~a 341 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMR--LLSAEAEVRLSDMRGGKMDEDAWEKLVQR 341 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHH--HHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456889999999999999999998776 568999999888765443332 234445555433222 2233332 3344
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+ .+..+.|-|+++..- ..+...+.++..... .-++|||.
T Consensus 342 ~~~l--~~~~l~I~d~~~~ti--~~I~~~~r~~~~~~~--~~lvvIDY 383 (505)
T PRK05636 342 LGKI--AQAPIFIDDSANLTM--MEIRSKARRLKQKHD--LKLIVVDY 383 (505)
T ss_pred HHHH--hcCCEEEECCCCCCH--HHHHHHHHHHHHhcC--CCEEEEcc
Confidence 4444 345566667775421 123333333333221 22667775
No 267
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.48 E-value=0.0012 Score=65.64 Aligned_cols=140 Identities=20% Similarity=0.249 Sum_probs=79.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH------------HhhhhcCCCeecCCCCCCHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV------------ILGEQVGVPVYTAGTEVKPS 251 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~------------~~~~~~gv~v~~~~~~~~~~ 251 (481)
.+-+++|-=|+||||+...++ ..+.|+||++|-...--...++.-. +..-..|.-|... .-+..
T Consensus 58 PvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV--k~~gv 133 (391)
T KOG2743|consen 58 PVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV--KDNGV 133 (391)
T ss_pred ceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe--cchHH
Confidence 478889999999999997774 3466999998876543222222110 1111223333322 22333
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHH----HhhhhccCCceEEEEEeCcchH-------------HHHHH
Q 011624 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL----KDVKRVLNPTEVLLVVDAMTGQ-------------EAAAL 314 (481)
Q Consensus 252 ~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el----~~i~~~~~p~~vvLVvda~~~~-------------~~~~~ 314 (481)
..+.+.++ +.+.+|+|+|+|.|..+. +-++++ ..+..-+.-|.++-|+||.-.. ++..+
T Consensus 134 raie~lvq--kkGkfD~IllETTGlAnP--aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 134 RAIENLVQ--KKGKFDHILLETTGLANP--APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred HHHHHHHh--cCCCcceEEEeccCCCCc--HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 44444444 357899999999987643 222221 1222333447889999984321 11222
Q ss_pred HHHhhhcCCeeEEEEcCCCCCCc
Q 011624 315 VTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 315 ~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
+. --..+|+||.|.-.+
T Consensus 210 iA------~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 210 IA------LADRIIMNKTDLVSE 226 (391)
T ss_pred Hh------hhheeeeccccccCH
Confidence 21 124689999997554
No 268
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.48 E-value=0.00018 Score=64.68 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-EEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl-LId~D~ 221 (481)
+++++|+.|+||||++..|..+|.++|++|. +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7889999999999999999999999999999 888887
No 269
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.47 E-value=0.002 Score=59.14 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHh-hhcCCeeEEEEcCCCCCCc-hh
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDSR-GG 339 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f-~~~~~i~GvIlnKvD~~~~-~g 339 (481)
.++.+.|+||||.... ......... ..+.+++|+|+..+. ......... ....+ .-+|+||+|.... ..
T Consensus 65 ~~~~~~l~Dt~G~~~~----~~~~~~~~~--~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 65 QEYLLNLIDTPGHVDF----SYEVSRSLA--ACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADPE 137 (179)
T ss_pred CcEEEEEEECCCChhh----HHHHHHHHH--hcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCHH
Confidence 4567889999997432 122222222 347889999985431 122222221 22333 4589999996432 22
Q ss_pred H-HHHHHHHhCCC
Q 011624 340 A-ALSVKEVSGKP 351 (481)
Q Consensus 340 ~-~~~~~~~~glP 351 (481)
. ...+....+.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (179)
T cd01890 138 RVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHhCCC
Confidence 2 23444445554
No 270
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.00016 Score=75.89 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
+|+.|+|.+|+||||++.+|+..|.++|++|.+|--|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4899999999999999999999999999999997654
No 271
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.46 E-value=0.00026 Score=73.67 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=37.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++++|.++|.+|+||||++.+|...|.++|++|.+|--|..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 46699999999999999999999999999999999987654
No 272
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.46 E-value=0.0019 Score=63.83 Aligned_cols=58 Identities=31% Similarity=0.413 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCe--EEEEeccCCc
Q 011624 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS--CMLVAGDVYR 223 (481)
Q Consensus 160 ~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~k--VlLId~D~~r 223 (481)
.+..++...++. ...+.|.||.++|+.|+||||++..|+..+++.+.+ |.+|..|-|-
T Consensus 65 ~~~~~~~~~l~~------~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 65 RLFAELLRFLGT------NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred HHHHHHHHHhcc------CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 344455555552 134578999999999999999999999999988754 9999999885
No 273
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0026 Score=60.41 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.|+++|.+||||||.+..||..|.+++++|..+..|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 688999999999999999999999999999998886
No 274
>PF13245 AAA_19: Part of AAA domain
Probab=97.46 E-value=0.00021 Score=57.37 Aligned_cols=45 Identities=33% Similarity=0.416 Sum_probs=34.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeccCCchhHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~----G~kVlLId~D~~rp~aidql 230 (481)
..+.++.|++|+||||++.+++.++... |.+|+++. |...+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a---~t~~aa~~l 58 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA---PTRAAADEL 58 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC---CCHHHHHHH
Confidence 4578889999999999999999888765 88899884 444444444
No 275
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.45 E-value=0.00065 Score=61.51 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=36.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh-----hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN-----IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~-----~~~~i~GvIlnKvD~~ 335 (481)
.+..+.++||||..... ....... ..++.+++|+|+...... ......+. ... ..-+|+||+|..
T Consensus 48 ~~~~~~l~Dt~G~~~~~----~~~~~~~--~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D~~ 120 (167)
T cd04160 48 GNARLKFWDLGGQESLR----SLWDKYY--AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGV-PLLILANKQDLP 120 (167)
T ss_pred CCEEEEEEECCCChhhH----HHHHHHh--CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCC-CEEEEEEccccc
Confidence 35779999999864311 1111111 235788999998654322 12222211 123 355899999964
Q ss_pred C
Q 011624 336 S 336 (481)
Q Consensus 336 ~ 336 (481)
.
T Consensus 121 ~ 121 (167)
T cd04160 121 D 121 (167)
T ss_pred c
Confidence 3
No 276
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.45 E-value=0.00064 Score=75.10 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~---~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
+-|+++|+.++||||++.+|..... +++ .|. | + ..|.. ......|+.+..... .
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~-~v~----~--~--~~D~~-~~ErerGiTI~~~~~-------------~ 58 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANE-AVA----E--R--VMDSN-DLERERGITILAKNT-------------A 58 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccc-cce----e--e--cccCc-hHHHhCCccEEeeeE-------------E
Confidence 3588999999999999999965321 111 111 0 0 01111 111223444332111 1
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HH--HHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~--~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+.++++.+.||||||... +..++...... .+.++||+|+..+ +. ....+.. ..+++ -|++||+|..
T Consensus 59 v~~~~~kinlIDTPGh~D----F~~ev~~~l~~--aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~-IVviNKiD~~ 129 (594)
T TIGR01394 59 IRYNGTKINIVDTPGHAD----FGGEVERVLGM--VDGVLLLVDASEGPMPQTRFVLKKALE--LGLKP-IVVINKIDRP 129 (594)
T ss_pred EEECCEEEEEEECCCHHH----HHHHHHHHHHh--CCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCE-EEEEECCCCC
Confidence 124678899999999743 33444444443 4889999999544 21 1222222 23443 5889999964
No 277
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.44 E-value=0.00077 Score=65.34 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDG 334 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~ 334 (481)
.++.+.|+||||.... ..++..... ..+.+++|+|+..+ ......++.. ...++ .-+++||+|.
T Consensus 71 ~~~~i~iiDTPG~~~f----~~~~~~~l~--~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 71 NEYLINLIDSPGHVDF----SSEVTAALR--LCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred CceEEEEECCCCcccc----HHHHHHHHH--hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 3677899999998642 223322222 24788999999654 2222223222 22343 4578999995
No 278
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.44 E-value=0.00012 Score=66.28 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
+++++|.+|+||||++..|+..+...|.++.+++.|.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5788999999999999999999998899999999998764
No 279
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00053 Score=72.97 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
=+.++.+=--||||++-.|.. ..| .|+.+..+....|.+ ...+.-|+.+-.-...+. -+ ...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe---~tg----~i~~~~~q~q~LDkl-~vERERGITIkaQtasif---------y~-~~~ 123 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLE---LTG----TIDNNIGQEQVLDKL-QVERERGITIKAQTASIF---------YK-DGQ 123 (650)
T ss_pred ceEEEEEecCCcchHHHHHHH---HhC----CCCCCCchhhhhhhh-hhhhhcCcEEEeeeeEEE---------EE-cCC
Confidence 344455556789999977743 223 566666777777777 445556776653221110 00 023
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCC-CchhH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD-SRGGA 340 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~-~~~g~ 340 (481)
.|-+-+|||||..+ +..|+...+.. ++.++|||||..| |..+....+|..++.+. .|+||+|.. +....
T Consensus 124 ~ylLNLIDTPGHvD----Fs~EVsRslaa--c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVD----FSGEVSRSLAA--CDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLPSADPER 196 (650)
T ss_pred ceEEEeecCCCccc----ccceehehhhh--cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCCCCCHHH
Confidence 48899999999876 44555544443 4889999999766 45555556676555443 689999964 44444
Q ss_pred HH-HHHHHhCCC
Q 011624 341 AL-SVKEVSGKP 351 (481)
Q Consensus 341 ~~-~~~~~~glP 351 (481)
+. .+.+.+++|
T Consensus 197 V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 197 VENQLFELFDIP 208 (650)
T ss_pred HHHHHHHHhcCC
Confidence 43 344455554
No 280
>PRK08006 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.035 Score=59.84 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=67.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..++++.|.+|+|||+++.++|...+ ++|++|+++....-.....+. ..+...+++...... .++..++ +..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~R--lla~~~~v~~~~i~~~~l~~~e~~~~~~a 300 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMR--MLASLSRVDQTRIRTGQLDDEDWARISGT 300 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH--HHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 457899999999999999999998876 469999999988654333332 234445555432221 2333333 2233
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+. ....+.|-|+++... ..+.+.+.++.... +..-++|||.
T Consensus 301 ~~~~~-~~~~l~I~d~~~~t~--~~i~~~~r~~~~~~-~~~~lvvIDY 344 (471)
T PRK08006 301 MGILL-EKRNMYIDDSSGLTP--TEVRSRARRIFREH-GGLSLIMIDY 344 (471)
T ss_pred HHHHH-hcCCEEEECCCCCCH--HHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 44432 344566667765431 22333333333221 1123666775
No 281
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.00069 Score=58.83 Aligned_cols=43 Identities=30% Similarity=0.443 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
+..+++.|++|+||||++..++..+...+.+|..+++..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 4578899999999999999999988877889999988766543
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.43 E-value=0.00072 Score=76.50 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=39.7
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHH-hhhcCCeeEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~-f~~~~~i~GvIlnKvD~~ 335 (481)
+.++++.||||||..... .++...+. ..|.+++|+|+..+ .......+. .....++. +++||+|..
T Consensus 83 ~~~~~i~liDTPG~~~f~----~~~~~al~--~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFG----GDVTRAMR--AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred CCceEEEEEeCCCccccH----HHHHHHHH--hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence 467899999999986422 22222222 24888999998654 222222222 13334443 899999964
No 283
>PRK06893 DNA replication initiation factor; Validated
Probab=97.42 E-value=0.00065 Score=66.05 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
..+.+.|++|+|||+++..+|..+.++|.+|.++.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3688999999999999999999999889999887764
No 284
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.42 E-value=0.00084 Score=62.96 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHh-hhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f-~~~~~i~GvIlnKvD~~ 335 (481)
+++.+.++||||... +..++.... ...+.+++|+|+..+. ......... ....+ .-+++||+|..
T Consensus 66 ~~~~~~i~DtpG~~~----~~~~~~~~~--~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHAS----LIRTIIGGA--QIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcHH----HHHHHHHHH--hhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccC
Confidence 467899999999732 333332211 2347889999996431 111111111 11233 34889999964
No 285
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.41 E-value=0.0002 Score=61.76 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+|+++|++||||||++..||..+ |..+. +.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i--~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVI--SMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEE--EEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEE--Eecc
Confidence 68899999999999999998776 66554 4443
No 286
>PRK12736 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.0014 Score=68.85 Aligned_cols=126 Identities=22% Similarity=0.254 Sum_probs=65.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
..-|+++|+.++||||++..|.....+.|...... + ...|.. ......|+.+-.... .+.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~----~--~~~d~~-~~E~~rg~T~~~~~~-------------~~~ 71 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKD----Y--DSIDAA-PEEKERGITINTAHV-------------EYE 71 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccc----h--hhhcCC-HHHHhcCccEEEEee-------------Eec
Confidence 34578889999999999999986554444321100 0 001111 111122332211110 011
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCe--eEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI--TGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i--~GvIlnKvD~~ 335 (481)
.++..+.+|||||.. .++..+.. .....+.+++|+|+..+ ....+.+... ...++ .-+++||+|..
T Consensus 72 ~~~~~i~~iDtPGh~----~f~~~~~~--~~~~~d~~llVvd~~~g~~~~t~~~~~~~-~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 72 TEKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVAATDGPMPQTREHILLA-RQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred CCCcEEEEEECCCHH----HHHHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHHHH-HHcCCCEEEEEEEecCCc
Confidence 245678999999953 23333322 22245888999999643 1112222211 12334 33679999964
No 287
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.41 E-value=0.0011 Score=65.73 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=45.8
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHH--H----cCCeEEEEeccC-CchhHHHHH
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK--K----QGKSCMLVAGDV-YRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~--~----~G~kVlLId~D~-~rp~aidql 230 (481)
..|.++|+++.. ...|+=++|++|+|||.++..||.... . .+.+|++||++- |.+.-+.++
T Consensus 25 ~~lD~~L~GGi~-------~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 25 KSLDELLGGGIP-------TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp HHHHHHTTSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHH
T ss_pred HHHHHhhCCCCC-------CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHH
Confidence 467778887664 356888999999999999999986543 1 257899999996 676655554
No 288
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.41 E-value=0.00026 Score=67.62 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-HHHHHHHHhhhcCC--eeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIG--ITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~~~~~~~f~~~~~--i~GvIlnKvD~~~ 336 (481)
++..+.|+||||... +..++... ....+.+++|+|+..+. ........+....+ ..-+++||+|...
T Consensus 75 ~~~~~~liDTpG~~~----~~~~~~~~--~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 75 PKRKFIIADTPGHEQ----YTRNMVTG--ASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred CCceEEEEECCcHHH----HHHHHHHh--hhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 566799999999632 22222221 22458889999996541 11111111211222 2335799999753
No 289
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.40 E-value=0.0016 Score=61.92 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
-.++.||.|+||||.+..+-.+...-|+++-+|..||-
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA 42 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA 42 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence 35567999999999999999999999999999999974
No 290
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.0015 Score=65.60 Aligned_cols=90 Identities=26% Similarity=0.358 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHH----cC------CeEEEEeccCCchhHHHHHHHhhhhcCCC---eecCCC----
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKK----QG------KSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGT---- 246 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~----~G------~kVlLId~D~~rp~aidql~~~~~~~gv~---v~~~~~---- 246 (481)
.++++.|.+|+||||++.-|.-+|+. -| .+|++|++..+|+...+.++......|++ +.+.+.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 45666799999999999988876653 14 48999999999999988887766666653 222111
Q ss_pred -------CCCHHHHHHHHHHHHHcCCCcEEEEcCC
Q 011624 247 -------EVKPSQIAKQGLEEAKKKNVDVVIVDTA 274 (481)
Q Consensus 247 -------~~~~~~~l~~~l~~~~~~~~D~VIIDt~ 274 (481)
.+.| .+.++....+....+|+||||+-
T Consensus 170 Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred cCCCccccccH-HHHHHHHHHHHHhCCCeEEEcch
Confidence 1222 34555555565568999999984
No 291
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.001 Score=68.28 Aligned_cols=90 Identities=26% Similarity=0.342 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.-+++.|++|+|||+++.++|..+.++|++|.+++++- ..+.+.... . +.... ....+..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~----l~~~l~~~~-------~--~~~~~----~~~~~~~l-- 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE----LIEILREIR-------F--NNDKE----LEEVYDLL-- 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH----HHHHHHHHH-------h--ccchh----HHHHHHHh--
Confidence 46889999999999999999999999999999887753 333332110 0 00001 11113443
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
.++|++|||--|..........++-.+.+
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~iin 273 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNLIN 273 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 57899999999887554444444444443
No 292
>PRK07004 replicative DNA helicase; Provisional
Probab=97.37 E-value=0.022 Score=61.25 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..+++++|.+|+|||+++.++|...+ +.|++|+++....-.......+ .+...+++...... .+...++ +..+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~--la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRM--LGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456899999999999999999998876 5699999999987654443332 23344554432211 2233332 3455
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+ .+..+.|-|+|+.. ...+.+.+.++..... ..-++|+|-
T Consensus 290 ~~~l--~~~~l~I~d~~~~~--~~~i~~~~r~l~~~~~-~~~lviIDY 332 (460)
T PRK07004 290 VQKM--SEAQLFIDETGGLN--PMELRSRARRLARQCG-KLGLIIIDY 332 (460)
T ss_pred HHHH--hcCCEEEECCCCCC--HHHHHHHHHHHHHhCC-CCCEEEECh
Confidence 5555 34567777887642 2233344444433211 122566665
No 293
>CHL00071 tufA elongation factor Tu
Probab=97.36 E-value=0.0014 Score=69.27 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.-++++|..++||||++..|...+..-..+.... ....|+. ......|+.+-.... .+..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~------~~~~d~~-~~e~~rg~T~~~~~~-------------~~~~ 72 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKK------YDEIDSA-PEEKARGITINTAHV-------------EYET 72 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccc------cccccCC-hhhhcCCEeEEccEE-------------EEcc
Confidence 4578899999999999999975543211111100 0111111 111122332211100 0112
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCe--eEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI--TGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i--~GvIlnKvD~~~ 336 (481)
++..+++|||||.. .+...+.... ...+.+++|+|+..+ ....+.+... ...++ .-+++||+|...
T Consensus 73 ~~~~~~~iDtPGh~----~~~~~~~~~~--~~~D~~ilVvda~~g~~~qt~~~~~~~-~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 73 ENRHYAHVDCPGHA----DYVKNMITGA--AQMDGAILVVSAADGPMPQTKEHILLA-KQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred CCeEEEEEECCChH----HHHHHHHHHH--HhCCEEEEEEECCCCCcHHHHHHHHHH-HHcCCCEEEEEEEccCCCC
Confidence 45678999999953 2344432222 245889999999543 1222222211 12333 336799999754
No 294
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.35 E-value=0.002 Score=58.73 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=43.9
Q ss_pred EEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH-HHHHHhhhcCCeeEEEEcCCCCCC-chhHHHHHHHH
Q 011624 270 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGDS-RGGAALSVKEV 347 (481)
Q Consensus 270 IIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~-~~~~~f~~~~~i~GvIlnKvD~~~-~~g~~~~~~~~ 347 (481)
+|||||..........++... ...++.+++|+|+....+.. ..+..+.... ..-+++||.|... ....+...+..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~--~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~-~ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITT--LQDVDMLIYVHGANDPESRLPAGLLDIGVSK-RQIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred cccCCccccCCHHHHHHHHHH--HhcCCEEEEEEeCCCcccccCHHHHhccCCC-CeEEEEEccccCcccHHHHHHHHHH
Confidence 589999743333333333222 22458889999996543221 1222222222 2458999999643 23333444555
Q ss_pred hCC--CeEEe
Q 011624 348 SGK--PIKLV 355 (481)
Q Consensus 348 ~gl--PV~~i 355 (481)
.+. |+.++
T Consensus 118 ~~~~~p~~~~ 127 (158)
T PRK15467 118 TGFEEPIFEL 127 (158)
T ss_pred cCCCCCEEEE
Confidence 554 66443
No 295
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.35 E-value=0.00088 Score=66.85 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=73.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
---+++.|.+.+||||++..+. |.||..+..-+.. +....+|+ +.
T Consensus 72 ~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~T--------Tr~~ilgi--~t------------------- 116 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHT--------TRHRILGI--IT------------------- 116 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhh------CCccccccccccc--------eeeeeeEE--Ee-------------------
Confidence 3467788999999999999987 8888865554331 11222222 21
Q ss_pred cCCCcEEEEcCCCCccccHH-----HHHHHHhhhhcc-CCceEEEEEeCcch-----HHHHHHHHHhhhcCCeeEEEEcC
Q 011624 263 KKNVDVVIVDTAGRLQIDKA-----MMDELKDVKRVL-NPTEVLLVVDAMTG-----QEAAALVTTFNIEIGITGAILTK 331 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~-----~~~el~~i~~~~-~p~~vvLVvda~~~-----~~~~~~~~~f~~~~~i~GvIlnK 331 (481)
.+++.+|++||||.+..... .+.-+.....++ ..|-+++|+|+... -......+.|.. + ..-+++||
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~-i-ps~lvmnk 194 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK-I-PSILVMNK 194 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc-C-Cceeeccc
Confidence 26788999999998855221 111111111222 24777888898522 244555666652 1 13368999
Q ss_pred CCCCCchhHHHH
Q 011624 332 LDGDSRGGAALS 343 (481)
Q Consensus 332 vD~~~~~g~~~~ 343 (481)
+|.-..-..++.
T Consensus 195 id~~k~k~~Ll~ 206 (379)
T KOG1423|consen 195 IDKLKQKRLLLN 206 (379)
T ss_pred hhcchhhhHHhh
Confidence 986544433333
No 296
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.35 E-value=0.00021 Score=67.54 Aligned_cols=39 Identities=36% Similarity=0.552 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCe----EEEEeccCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~k----VlLId~D~~r 223 (481)
||.++|++||||||++..|+..|.+.|.. +.++..|.|-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68899999999999999999999988876 7888888775
No 297
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.35 E-value=0.0049 Score=65.99 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.-+++.|++|+|||+++..++..+.++ |.+|.+++++.|.......+.. + .. ....+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~-----~-----------~~---~~~~~~~ 209 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRN-----N-----------TM---EEFKEKY 209 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHc-----C-----------cH---HHHHHHH
Confidence 347889999999999999999998877 7899999888664333222210 0 01 1222333
Q ss_pred HcCCCcEEEEcCCCCcccc
Q 011624 262 KKKNVDVVIVDTAGRLQID 280 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d 280 (481)
..+|+++||=...+...
T Consensus 210 --~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 210 --RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred --hcCCEEEEehhhhhcCC
Confidence 46899999998766443
No 298
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.35 E-value=0.0074 Score=63.87 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
++.-++++|.+|+||||++..|.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~ 193 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALL 193 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34567888999999999998875
No 299
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.33 E-value=0.00032 Score=65.56 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=39.2
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
+++.+++++|.+|+||||++..|+..+...|..+.+++.|..|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 35789999999999999999999999988898899999997663
No 300
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.33 E-value=0.0011 Score=71.45 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCC--eecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP--VYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~--v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..|+++|.+||||||+...|. |.+...+. + .| |+. ..... .
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~-~--~~-------------gvT~d~~~~~---------------~ 81 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRIL------GRREAVVE-D--VP-------------GVTRDRVSYD---------------A 81 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHh------CcCccccc-C--CC-------------CCCEeeEEEE---------------E
Confidence 468899999999999998886 32222111 1 11 111 00000 0
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhh--hccCCceEEEEEeCcchH--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~--~~~~p~~vvLVvda~~~~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
...+..+.|+||||.......+...+.... .....+.+++|+|+..+. .....+..+...-...-+|+||+|...
T Consensus 82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 124556899999997532222222221111 122358899999996441 112222222222233558899999743
No 301
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.33 E-value=0.00077 Score=60.68 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=46.6
Q ss_pred EEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH--HHHHHHhhhcCCeeEEEEcCCCCCCc---hhHHHH
Q 011624 269 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDSR---GGAALS 343 (481)
Q Consensus 269 VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~--~~~~~~f~~~~~i~GvIlnKvD~~~~---~g~~~~ 343 (481)
.+|||||-.-....+...|... ..+.+-+++|.|++..... -..+..|+ .++.| |+||+|.... ...+..
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~t--a~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvIG-VITK~Dl~~~~~~i~~a~~ 113 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVT--AQDADVVLLLQDATEPRSVFPPGFASMFN--KPVIG-VITKIDLPSDDANIERAKK 113 (143)
T ss_pred cEEECChhheeCHHHHHHHHHH--HhhCCEEEEEecCCCCCccCCchhhcccC--CCEEE-EEECccCccchhhHHHHHH
Confidence 4499999765566666665333 3356888999999655432 23345564 24555 5799997733 334445
Q ss_pred HHHHhCC
Q 011624 344 VKEVSGK 350 (481)
Q Consensus 344 ~~~~~gl 350 (481)
.+...|.
T Consensus 114 ~L~~aG~ 120 (143)
T PF10662_consen 114 WLKNAGV 120 (143)
T ss_pred HHHHcCC
Confidence 5566565
No 302
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.33 E-value=0.00051 Score=66.69 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=37.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE-EeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlL-Id~D~~r 223 (481)
.+|.++.++|++|+||||++..|+..+...+..+.+ +..|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 468899999999999999999999999987777666 8888764
No 303
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.32 E-value=0.001 Score=71.09 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=38.6
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHhhhcCCe--eEEEEcC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTK 331 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f~~~~~i--~GvIlnK 331 (481)
.+++.+.||||||... +..++.... ..++.++||+|+..+. ...+.+. ....+++ .-|++||
T Consensus 82 ~~~~~i~lIDtPGh~~----f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRD----FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTLGVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChHH----HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHcCCCeEEEEEEc
Confidence 3577899999999542 444443322 2458889999996541 1112221 2223444 2368999
Q ss_pred CCC
Q 011624 332 LDG 334 (481)
Q Consensus 332 vD~ 334 (481)
+|.
T Consensus 155 mD~ 157 (446)
T PTZ00141 155 MDD 157 (446)
T ss_pred ccc
Confidence 994
No 304
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.32 E-value=0.0028 Score=66.69 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=64.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE--EeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCML--VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlL--Id~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..|++.|..++||||++..|...+.+.|..-.. -..|.. ......|+.+-.... .+
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~---------~~E~~rG~Ti~~~~~-------------~~ 70 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNA---------PEEKARGITINTAHV-------------EY 70 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCC---------HHHHhcCcceeeEEE-------------EE
Confidence 457888999999999999997665544432110 011211 011112332211100 00
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
..++..+.||||||... +...+. ......+.+++|+|+..+ ....+.+.... ..++..-+++||+|...
T Consensus 71 ~~~~~~~~liDtpGh~~----f~~~~~--~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 71 ETENRHYAHVDCPGHAD----YVKNMI--TGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred cCCCEEEEEEECCchHH----HHHHHH--HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 12456789999999642 333332 222345888999999653 22222222221 12232234689999643
No 305
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.0043 Score=58.90 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLV 217 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLI 217 (481)
+++++|++|+||||+...|+.++... +.++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 78999999999999999998888754 4455533
No 306
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.31 E-value=0.0035 Score=58.31 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
.|.+.+.+|.||||.+..+|...+.+|++|+++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 444444599999999999999999999999766
No 307
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.31 E-value=0.00039 Score=76.80 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.+++.++|.+|+||||++.+|...|.++|++|.+|-.|.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 569999999999999999999999999999999999854
No 308
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.31 E-value=0.003 Score=59.21 Aligned_cols=86 Identities=29% Similarity=0.453 Sum_probs=45.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...++++|+.|+|||++-..|.. |..+. + +.-. .+..... .. .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~-----~~~~~-----T-----------~tS~--e~n~~~~--~~------------~ 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN-----GKTVP-----T-----------VTSM--ENNIAYN--VN------------N 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH-----SS--------B--------------S--SEEEECC--GS------------S
T ss_pred CceEEEEcCCCCCHHHHHHHHhc-----CCcCC-----e-----------eccc--cCCceEE--ee------------c
Confidence 35788999999999999988863 22221 1 1111 1111000 00 0
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~ 308 (481)
..+..+-|||.||..-.-..+..++.... ..-.+++|+|+.+.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~---~~k~IIfvvDSs~~ 88 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKYLS---NAKGIIFVVDSSTD 88 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHHHG---GEEEEEEEEETTTH
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhchh---hCCEEEEEEeCccc
Confidence 13446899999998654444555432222 23678999999654
No 309
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.30 E-value=0.00033 Score=64.40 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=35.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+.|+.++|..||||||++.+|...|..+|++|.+|--..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 469999999999999999999999999999999886654
No 310
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.29 E-value=0.0011 Score=70.75 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=38.4
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHhhhcCCe--eEEEEcC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTK 331 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f~~~~~i--~GvIlnK 331 (481)
.+++.+.||||||... +...+..- ...++.++||+|+..+. ...+.+. +....++ .-|++||
T Consensus 82 ~~~~~i~liDtPGh~d----f~~~~~~g--~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~-~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 82 TTKYYCTVIDAPGHRD----FIKNMITG--TSQADCAVLIIDSTTGGFEAGISKDGQTREHAL-LAFTLGVKQMICCCNK 154 (447)
T ss_pred CCCEEEEEEECCCHHH----HHHHHHhh--hhhccEEEEEEEcccCceecccCCCchHHHHHH-HHHHcCCCcEEEEEEc
Confidence 3567899999999643 44444222 23458899999996541 1111111 1223344 3456899
Q ss_pred CCCC
Q 011624 332 LDGD 335 (481)
Q Consensus 332 vD~~ 335 (481)
+|..
T Consensus 155 mD~~ 158 (447)
T PLN00043 155 MDAT 158 (447)
T ss_pred ccCC
Confidence 9964
No 311
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.0011 Score=66.13 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.-+++.|++|+|||.++..++..+.++|++|.++.+. ..++.+... .. .... .+.+..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a-~~----------~~~~----~~~l~~l-- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVA-RR----------ELQL----ESAIAKL-- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHH-Hh----------CCcH----HHHHHHH--
Confidence 3588999999999999999999999999999977653 344444211 00 0011 1234444
Q ss_pred CCCcEEEEcCCCCccccH
Q 011624 264 KNVDVVIVDTAGRLQIDK 281 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~ 281 (481)
..+|++|||=.|....+.
T Consensus 166 ~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred hcCCEEEEeccccccCCH
Confidence 578999999988765543
No 312
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.29 E-value=0.0053 Score=64.71 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..+++.|++|+|||+++..++..+.++ |.+|.+++++.|.......+. .+ . . ....+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~-----~~----------~-~---~~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALR-----NN----------K-M---EEFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHH-----cC----------C-H---HHHHHHH
Confidence 457889999999999999999998876 789999988755332222210 00 0 1 1222333
Q ss_pred HcCCCcEEEEcCCCCccc
Q 011624 262 KKKNVDVVIVDTAGRLQI 279 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~ 279 (481)
..+|+++||=...+..
T Consensus 198 --~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 198 --RSVDLLLIDDIQFLAG 213 (405)
T ss_pred --HhCCEEEEehhhhhcC
Confidence 4589999999876644
No 313
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.29 E-value=0.0018 Score=57.18 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHHHHHHhhhc---CCeeEEEEcCCCCC-C
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIE---IGITGAILTKLDGD-S 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~~~~~f~~~---~~i~GvIlnKvD~~-~ 336 (481)
..+++.++|+||.... ......... ..+.+++|+|+..... +......+... -...-+|+||+|.. .
T Consensus 47 ~~~~~~l~D~~g~~~~----~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 47 KTVKLQIWDTAGQERF----RSITPSYYR--GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ 120 (159)
T ss_pred EEEEEEEEecCChHHH----HHHHHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc
Confidence 3467899999997421 111111222 3478899999855322 22222222211 13456899999974 2
Q ss_pred c---hhHHHHHHHHhCCCeEEe
Q 011624 337 R---GGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 337 ~---~g~~~~~~~~~glPV~~i 355 (481)
. ...+.......+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 121 RQVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred ccccHHHHHHHHHHcCCeEEEE
Confidence 2 223344444456666433
No 314
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.28 E-value=0.0033 Score=67.71 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+..|+++|.+||||||++..|. |.....+.. .|+. ....+.. .+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~---~~gt-----------T~d~~~~---------------~~ 254 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD---VAGT-----------TVDPVDS---------------LI 254 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC---CCCc-----------cCCcceE---------------EE
Confidence 35678889999999999998885 222111110 0110 0000000 00
Q ss_pred HcCCCcEEEEcCCCCccc-----cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~-----d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~ 334 (481)
...+..+.|+||||.... .......+.........+.+++|+|++.+ ..-...+......-...-+|+||+|.
T Consensus 255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 113456789999995211 11222222222222345888999998544 22223333222222235588999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 335 ~~ 336 (472)
T PRK03003 335 VD 336 (472)
T ss_pred CC
Confidence 43
No 315
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.28 E-value=0.0016 Score=60.73 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=36.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHh-hh---cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF-NI---EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f-~~---~~~i~GvIlnKvD~~ 335 (481)
+++.+.++|+||.... ...... . ....+.+++|+|+....... .....+ .. .-.+.-+|+||.|..
T Consensus 59 ~~~~~~~~D~~G~~~~-~~~~~~---~--~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 59 GNIKFTTFDLGGHQQA-RRLWKD---Y--FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CCEEEEEEECCCCHHH-HHHHHH---H--hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 4567899999997421 111111 1 12358889999996543221 112111 10 112356889999964
No 316
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.28 E-value=0.0017 Score=58.25 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHH---hhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTT---FNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~---f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.++|+||.... . ....... ...+.+++|+|.....+... .... +...-.+.-+|.||+|....
T Consensus 48 ~~~~~l~D~~G~~~~-~---~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 48 RVKLQIWDTAGQERF-R---SITSSYY--RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEEEECCChHHH-H---HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 356889999996321 1 1111122 23578899999865433221 1122 22112245588999996541
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+.......+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (164)
T smart00175 122 QVSREEAEAFAEEHGLPF 139 (164)
T ss_pred CCCHHHHHHHHHHcCCeE
Confidence 233455566667775
No 317
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.27 E-value=0.017 Score=61.72 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHH--HHh-hhhccCCceEEEEEeCcchHHHHH-HHHHhh-hcCCeeEEEEcCCCCCCch
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDE--LKD-VKRVLNPTEVLLVVDAMTGQEAAA-LVTTFN-IEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~e--l~~-i~~~~~p~~vvLVvda~~~~~~~~-~~~~f~-~~~~i~GvIlnKvD~~~~~ 338 (481)
.++.+.|+||||.-... ..... +.. ....-..+.+++|+|++...+... .+.... ...+ .-+|+||+|....
T Consensus 249 ~g~~v~l~DTaG~~~~~-~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~p-iIlV~NK~Dl~~~- 325 (442)
T TIGR00450 249 NGILIKLLDTAGIREHA-DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKP-FILVLNKIDLKIN- 325 (442)
T ss_pred CCEEEEEeeCCCcccch-hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCC-EEEEEECccCCCc-
Confidence 45668899999974322 11111 111 112224588899999854322111 222222 1233 3489999997543
Q ss_pred hHHHHHHHHhCCCeEEe
Q 011624 339 GAALSVKEVSGKPIKLV 355 (481)
Q Consensus 339 g~~~~~~~~~glPV~~i 355 (481)
.........+.|+..+
T Consensus 326 -~~~~~~~~~~~~~~~v 341 (442)
T TIGR00450 326 -SLEFFVSSKVLNSSNL 341 (442)
T ss_pred -chhhhhhhcCCceEEE
Confidence 2223344556675433
No 318
>PRK06904 replicative DNA helicase; Validated
Probab=97.27 E-value=0.095 Score=56.54 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC--CCCHHHH--HHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT--EVKPSQI--AKQ 256 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~--~~~~~~~--l~~ 256 (481)
+..+++++|.+|+|||+++.++|...+. .|++|+++..+.-....... ..+...+++...... .++..++ +..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~R--lla~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMR--MLASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH--HHHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 4568999999999999999999987764 69999999998654333332 234445555433221 2343333 233
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
++..+. ....+-|-|+++... ..+.+.+.++.... ...-++|||-
T Consensus 298 a~~~l~-~~~~l~I~d~~~~t~--~~i~~~~r~~~~~~-~~~~lvvIDY 342 (472)
T PRK06904 298 TVGMFK-QKPNLYIDDSSGLTP--TELRSRARRVYREN-GGLSLIMVDY 342 (472)
T ss_pred HHHHHh-cCCCEEEECCCCCCH--HHHHHHHHHHHHhC-CCCCEEEEec
Confidence 444442 234577778877532 22333333333211 1122667775
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.00027 Score=62.69 Aligned_cols=33 Identities=36% Similarity=0.677 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+|+++|++|+||||++..|+..+ | ..+|+.|.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~---~--~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL---G--AVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS---T--EEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---C--CEEEeHHHH
Confidence 58899999999999998887544 3 566788764
No 320
>PF13479 AAA_24: AAA domain
Probab=97.26 E-value=0.00048 Score=66.20 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=48.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++..+++.|++|+||||++..+ -+++++|+|.---. +..+. +.+.+... ...+ +.+.+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~----~~~~~---~~~~i~i~---s~~~-~~~~~~~l 62 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS----LKFLD---DGDVIPIT---SWED-FLEALDEL 62 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc----hhhhc---CCCeeCcC---CHHH-HHHHHHHH
Confidence 4567889999999999998777 68999999964111 11111 33343332 2222 33444333
Q ss_pred --HcCCCcEEEEcCCCCc
Q 011624 262 --KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 --~~~~~D~VIIDt~G~~ 277 (481)
...+||.||||+...+
T Consensus 63 ~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 63 EEDEADYDTIVIDSISWL 80 (213)
T ss_pred HhccCCCCEEEEECHHHH
Confidence 2368999999997654
No 321
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.26 E-value=0.0021 Score=64.76 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~~r 223 (481)
+.|.||.++|++||||||++..|...+.+. +.+|.++..|.|-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 468999999999999999998888777643 4589999999875
No 322
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.26 E-value=0.0007 Score=63.34 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=49.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+.-+++.|++|+|||.++..++..+.++|++|.+++.+ ..++.++.. ...+ . ..+.+..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~~--------~~~~---~----~~~~~~~l- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQS--------RSDG---S----YEELLKRL- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHCC--------HCCT---T----HCHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceecccccc--------cccc---c----hhhhcCcc-
Confidence 34688899999999999999999999999999988764 344444211 1000 1 11334554
Q ss_pred cCCCcEEEEcCCCCccc
Q 011624 263 KKNVDVVIVDTAGRLQI 279 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~ 279 (481)
.++|++|||=-|....
T Consensus 107 -~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 107 -KRVDLLILDDLGYEPL 122 (178)
T ss_dssp -HTSSCEEEETCTSS--
T ss_pred -ccccEecccccceeee
Confidence 4789999999987654
No 323
>PRK06321 replicative DNA helicase; Provisional
Probab=97.26 E-value=0.046 Score=58.88 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..+++++|.+|+|||+++.++|...+ +.|++|++++.+.-.....+.+ .+...+++.-.... .....++ +..+
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI--ICSRSEVESKKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 356899999999999999999998877 5699999999887544443332 33344555432211 2233332 2344
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+ .+..+.|-|+|+.. -..+.+.+..+..... .-++|||.
T Consensus 303 ~~~l--~~~~~~idd~~~~t--i~~i~~~~r~~~~~~~--~~lvvIDy 344 (472)
T PRK06321 303 VNEM--QEHTLLIDDQPGLK--ITDLRARARRMKESYD--IQFLIIDY 344 (472)
T ss_pred HHHH--HcCCEEEeCCCCCC--HHHHHHHHHHHHHhcC--CCEEEEcc
Confidence 4444 23456666676542 1223344444333221 12677776
No 324
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.25 E-value=0.00035 Score=67.58 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~r 223 (481)
|+.++|++||||||++..|+..|.. .+.+|.+|..|-|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5788999999999999999998875 56789999999874
No 325
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.25 E-value=0.0026 Score=57.03 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHHHHHHhh-----hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFN-----IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~~~~~f~-----~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||..... .... .... ..+.+++|+|.....+ .......+. ...+ .-+++||+|...
T Consensus 47 ~~~~~i~D~~g~~~~~-~~~~---~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYA-AIRD---NYHR--SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhh-HHHH---HHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccc
Confidence 4678999999974321 1111 1122 2366788888754432 222222221 1223 458899999643
Q ss_pred -c---hhHHHHHHHHhCCCeEE
Q 011624 337 -R---GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 337 -~---~g~~~~~~~~~glPV~~ 354 (481)
. ...........+.|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04139 120 KRQVSSEEAANLARQWGVPYVE 141 (164)
T ss_pred ccccCHHHHHHHHHHhCCeEEE
Confidence 1 22334555566777643
No 326
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.24 E-value=0.0038 Score=66.33 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+.-++++|.+|+||||++..|.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll 194 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL 194 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35678889999999999998875
No 327
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.009 Score=63.83 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=49.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+++.|++|+|||+++..++..+.+. +.+|.+++++.|.....+.+.. + . . .+..+.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~-----~----------~-~---~~f~~~~~ 192 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE-----G----------K-L---NEFREKYR 192 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc-----c----------c-H---HHHHHHHH
Confidence 38889999999999999999988765 6799999887554333222210 0 0 1 11222222
Q ss_pred cCCCcEEEEcCCCCcc
Q 011624 263 KKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~ 278 (481)
..+|++|||-+..+.
T Consensus 193 -~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 193 -KKVDVLLIDDVQFLI 207 (440)
T ss_pred -hcCCEEEEechhhhc
Confidence 468999999987653
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.24 E-value=0.0015 Score=61.99 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=59.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
.++.++.|++|+||||+...++..+...|++|.+++.- . .+.+.+ .+..++++............. ..-....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT-~--~Aa~~L---~~~~~~~a~Ti~~~l~~~~~~-~~~~~~~ 90 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT-N--KAAKEL---REKTGIEAQTIHSFLYRIPNG-DDEGRPE 90 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS-H--HHHHHH---HHHHTS-EEEHHHHTTEECCE-ECCSSCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc-H--HHHHHH---HHhhCcchhhHHHHHhcCCcc-ccccccc
Confidence 35889999999999999999999999999999866432 2 222223 333344443221100000000 0000000
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~ 306 (481)
....+++|||=++++. ...+..+....... ...+++|-|..
T Consensus 91 ~~~~~vliVDEasmv~--~~~~~~ll~~~~~~-~~klilvGD~~ 131 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD--SRQLARLLRLAKKS-GAKLILVGDPN 131 (196)
T ss_dssp -TSTSEEEESSGGG-B--HHHHHHHHHHS-T--T-EEEEEE-TT
T ss_pred CCcccEEEEecccccC--HHHHHHHHHHHHhc-CCEEEEECCcc
Confidence 2456899999999874 33344433332221 24678887864
No 329
>PRK12377 putative replication protein; Provisional
Probab=97.23 E-value=0.0014 Score=64.56 Aligned_cols=75 Identities=25% Similarity=0.400 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
.-+++.|++|+|||+++..++..+.++|++|.+++.. ...+.++..-. .+ .. ..+.+..+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~----~l~~~l~~~~~--------~~--~~----~~~~l~~l-- 161 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESYD--------NG--QS----GEKFLQEL-- 161 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH----HHHHHHHHHHh--------cc--ch----HHHHHHHh--
Confidence 4688999999999999999999999999999987664 33444322110 00 00 11334444
Q ss_pred CCCcEEEEcCCCCcc
Q 011624 264 KNVDVVIVDTAGRLQ 278 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~ 278 (481)
..+|++|||--|...
T Consensus 162 ~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 162 CKVDLLVLDEIGIQR 176 (248)
T ss_pred cCCCEEEEcCCCCCC
Confidence 689999999987754
No 330
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.23 E-value=0.0047 Score=59.88 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANY 206 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~ 206 (481)
.+|.+++++|++|+||||++..|...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999888643
No 331
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.23 E-value=0.0051 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..-|+++|.+|+||||+...|.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Confidence 34567889999999999998775
No 332
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.22 E-value=0.0032 Score=57.12 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHH---HHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALV---TTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~---~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
..+++-|.||+|.-.. ..+... .. ...+.+++|+|.....+. .... +...... ..-+|.||+|....
T Consensus 47 ~~~~~~i~Dt~G~~~~-~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-p~ivv~nK~Dl~~~ 119 (161)
T cd04124 47 KTILVDFWDTAGQERF-QTMHAS---YY--HKAHACILVFDVTRKITYKNLSKWYEELREYRPEI-PCIVVANKIDLDPS 119 (161)
T ss_pred EEEEEEEEeCCCchhh-hhhhHH---Hh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC-cEEEEEECccCchh
Confidence 3567889999986421 111111 11 234788999998654322 1122 2222233 34589999996432
Q ss_pred -hhHHHHHHHHhCCCeE
Q 011624 338 -GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 -~g~~~~~~~~~glPV~ 353 (481)
...........+.|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (161)
T cd04124 120 VTQKKFNFAEKHNLPLY 136 (161)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 1122333444556653
No 333
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.21 E-value=0.0027 Score=57.49 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
.|+++|.+|+||||+...|.
T Consensus 2 ~i~~~G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 57889999999999998885
No 334
>PTZ00416 elongation factor 2; Provisional
Probab=97.21 E-value=0.0011 Score=76.14 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
++-+.+|||||... +..++..... ..|.+++|+|+..+ .......+... .+. ..-+++||+|..
T Consensus 91 ~~~i~liDtPG~~~----f~~~~~~al~--~~D~ailVvda~~g~~~~t~~~~~~~~~~~~-p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVD----FSSEVTAALR--VTDGALVVVDCVEGVCVQTETVLRQALQERI-RPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHh----HHHHHHHHHh--cCCeEEEEEECCCCcCccHHHHHHHHHHcCC-CEEEEEEChhhh
Confidence 56689999999864 4455433333 24888999998554 11122222222 122 345889999976
No 335
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.21 E-value=0.0026 Score=57.11 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHh-hh---cCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF-NI---EIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f-~~---~~~i~GvIlnKvD~~ 335 (481)
.+.+.++||||...... ... ... ...+.+++|+|+....+.. ...... .. .-...-+++||.|..
T Consensus 43 ~~~l~i~D~~G~~~~~~-~~~---~~~--~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 43 HLSLTVWDVGGQEKMRT-VWK---CYL--ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred ceEEEEEECCCCHhHHH-HHH---HHh--ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 46789999998642111 111 111 2347889999996543221 112111 10 112356899999974
No 336
>PRK09183 transposase/IS protein; Provisional
Probab=97.20 E-value=0.0033 Score=62.39 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=51.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...+++.|++|+|||+++..|+..+..+|++|.++++. ....++... ...+ . +...+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~----~l~~~l~~a-~~~~----------~----~~~~~~~~- 161 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA----DLLLQLSTA-QRQG----------R----YKTTLQRG- 161 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH----HHHHHHHHH-HHCC----------c----HHHHHHHH-
Confidence 34677999999999999999998888899999977643 222232111 1100 0 11222222
Q ss_pred cCCCcEEEEcCCCCccccH
Q 011624 263 KKNVDVVIVDTAGRLQIDK 281 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~ 281 (481)
...+|++|||--|....+.
T Consensus 162 ~~~~dlLiiDdlg~~~~~~ 180 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQ 180 (259)
T ss_pred hcCCCEEEEcccccCCCCh
Confidence 2567999999998765443
No 337
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.20 E-value=0.00078 Score=64.09 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
..+.|+||||.. .+..++.... ...+.+++|+|+..+ ......+.... ......-+++||+|...
T Consensus 83 ~~i~~iDtPG~~----~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHE----ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChH----HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 568999999953 2333332222 234788999998542 12222222221 12222347999999753
No 338
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.20 E-value=0.0012 Score=74.35 Aligned_cols=55 Identities=31% Similarity=0.494 Sum_probs=42.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
..++.|.||+|||||.+.|.+.|...|++|+|. .|...|+|.+-.--...++++.
T Consensus 687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLt---syThsAVDNILiKL~~~~i~~l 741 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLIKILVALGKKVLLT---SYTHSAVDNILIKLKGFGIYIL 741 (1100)
T ss_pred hheeecCCCCCchhhHHHHHHHHHHcCCeEEEE---ehhhHHHHHHHHHHhccCccee
Confidence 677889999999999999999999999999977 4666666665433334444444
No 339
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.19 E-value=0.0022 Score=57.51 Aligned_cols=37 Identities=38% Similarity=0.659 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
+++++|++|+||||++..|+..+ ...+++.|.++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~ 37 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPA 37 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHH
Confidence 47889999999999999998764 34678999998653
No 340
>PRK12740 elongation factor G; Reviewed
Probab=97.19 E-value=0.0016 Score=73.09 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=47.6
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCC-ch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDS-RG 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~-~~ 338 (481)
+.++++++|||||... ...++..... ..+.+++|+|+..+. .......... .+.+ .-+|+||+|... ..
T Consensus 57 ~~~~~i~liDtPG~~~----~~~~~~~~l~--~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVD----FTGEVERALR--VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADF 129 (668)
T ss_pred ECCEEEEEEECCCcHH----HHHHHHHHHH--HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH
Confidence 4688999999999753 2222222222 348889999995542 1112222221 1222 447999999643 33
Q ss_pred h-HHHHHHHHhCCCeE
Q 011624 339 G-AALSVKEVSGKPIK 353 (481)
Q Consensus 339 g-~~~~~~~~~glPV~ 353 (481)
. .+..+.+.++.|+.
T Consensus 130 ~~~~~~l~~~l~~~~~ 145 (668)
T PRK12740 130 FRVLAQLQEKLGAPVV 145 (668)
T ss_pred HHHHHHHHHHHCCCce
Confidence 2 33455566777653
No 341
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.19 E-value=0.0021 Score=71.15 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~---~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
-+-++++|..|+||||++..|..... +++.. ..+.|.+ ......|+.+........ ..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~----------~~~lD~~-~~ErerGiTi~~~~v~~~--------~~ 67 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK----------AQVLDSM-DLERERGITIKAQAVRLN--------YK 67 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc----------cccccCc-hHHhhcCCcccccEEEEE--------EE
Confidence 45788899999999999988875321 11111 1111111 011122333221100000 00
Q ss_pred HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
....+++.+.|+||||... ...++..... ..+.+++|+|+..+ ++..........+++ .-+++||+|...
T Consensus 68 ~~dg~~~~lnLiDTPGh~d----F~~~v~~sl~--~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 68 AKDGETYILNLIDTPGHVD----FSYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred ccCCCcEEEEEEECCCcHH----HHHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 0011357789999999754 3333333333 24789999999654 222111111222344 458899999643
Q ss_pred -chhHH-HHHHHHhCCC
Q 011624 337 -RGGAA-LSVKEVSGKP 351 (481)
Q Consensus 337 -~~g~~-~~~~~~~glP 351 (481)
..... ..+....+++
T Consensus 141 a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 141 ADPERVKQEIEDVIGID 157 (600)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 22222 3444445654
No 342
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.18 E-value=0.003 Score=57.19 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH------HHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~------~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
.+.+-|+||||.... ..... ... ...+.+++|+|++...+.... +..+. ... ..-+|.||.|....
T Consensus 50 ~~~~~i~D~~G~~~~-~~~~~---~~~--~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~-~~iiv~nK~Dl~~~ 122 (166)
T cd01869 50 TIKLQIWDTAGQERF-RTITS---SYY--RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENV-NKLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEEECCCcHhH-HHHHH---HHh--CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC-cEEEEEEChhcccc
Confidence 456789999995321 11111 111 235788999998655433222 12222 122 34578899996432
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 011624 338 ----GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~ 353 (481)
...+...+...+.|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 123 RVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred cCCCHHHHHHHHHHcCCeEE
Confidence 2334555566677764
No 343
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.00043 Score=65.39 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
||.++|++||||||++..|+..+ .+.++.++..|.|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999998887 56789999999764
No 344
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.18 E-value=0.0036 Score=64.86 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..++++|.+++||||+...|. |.++. +.--+|. ..+. . ...+.. .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~------~~~~~-v~~~~~t--T~d~------~--~~~i~~------------------~ 234 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALT------GADVY-AADQLFA--TLDP------T--TRRLDL------------------P 234 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCcee-eccCCcc--ccCC------E--EEEEEe------------------C
Confidence 468888999999999998886 33322 2111110 0000 0 000000 1
Q ss_pred CCCcEEEEcCCCCccc-cHHHHHHHHhhhh-ccCCceEEEEEeCcchH--HHH----HHHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQI-DKAMMDELKDVKR-VLNPTEVLLVVDAMTGQ--EAA----ALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~-d~~~~~el~~i~~-~~~p~~vvLVvda~~~~--~~~----~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.+..+.|+||||.... ............. ....+-+++|+|++... +.. ..++.....-...-+|+||+|..
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 3457899999997422 2222232222221 22458889999985432 111 22232221112345899999975
Q ss_pred C
Q 011624 336 S 336 (481)
Q Consensus 336 ~ 336 (481)
.
T Consensus 315 ~ 315 (351)
T TIGR03156 315 D 315 (351)
T ss_pred C
Confidence 3
No 345
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.18 E-value=0.0025 Score=58.42 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
..++++|.+||||||++..|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc
Confidence 456788999999999987775
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.17 E-value=0.00058 Score=53.55 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
+++++|.+|+||||++..|+..| .|.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47789999999999999999988 6778887765
No 347
>PLN03126 Elongation factor Tu; Provisional
Probab=97.17 E-value=0.0025 Score=68.69 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE--EEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl--LId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..++++|..++||||++..|...+..-+.+.. ....|... .....|+.+-..... +
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~---------~Er~rGiTi~~~~~~-------------~ 139 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAP---------EERARGITINTATVE-------------Y 139 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCCh---------hHHhCCeeEEEEEEE-------------E
Confidence 45788899999999999999755432111110 00011110 011122221110000 0
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCe--eEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI--TGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i--~GvIlnKvD~~~ 336 (481)
..++..+.+|||||... +..++..-. ...|.+++|+|+..+ ....+.+.. ....++ .-+++||+|...
T Consensus 140 ~~~~~~i~liDtPGh~~----f~~~~~~g~--~~aD~ailVVda~~G~~~qt~e~~~~-~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 140 ETENRHYAHVDCPGHAD----YVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILL-AKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred ecCCcEEEEEECCCHHH----HHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEEEecccccC
Confidence 12456789999999643 333432222 245888999998644 111122221 112333 336799999753
No 348
>PRK05642 DNA replication initiation factor; Validated
Probab=97.17 E-value=0.0015 Score=63.68 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..+++.|++|+|||.++..++..+.++|++|.+++++-+- .. . ...++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~--------~~----------------~----~~~~~~~-- 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL--------DR----------------G----PELLDNL-- 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH--------hh----------------h----HHHHHhh--
Confidence 4678899999999999999999888889999988876321 00 0 1223333
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRV 293 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~ 293 (481)
.++|+++||-.+..........++-.+.+.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 467999999887654333333445444443
No 349
>PRK11058 GTPase HflX; Provisional
Probab=97.17 E-value=0.0038 Score=66.30 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.++++|.+++||||+...|. |.++. +.--++. ..+.. ...+.. ..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~~~~t--Tld~~--------~~~i~l------------------~~ 243 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRIT------EARVY-AADQLFA--TLDPT--------LRRIDV------------------AD 243 (426)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcee-eccCCCC--CcCCc--------eEEEEe------------------CC
Confidence 57888999999999998885 44443 2111110 00000 000000 12
Q ss_pred CCcEEEEcCCCCccc-cHHHHHHHHhhh-hccCCceEEEEEeCcchH--HHH----HHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQI-DKAMMDELKDVK-RVLNPTEVLLVVDAMTGQ--EAA----ALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~-d~~~~~el~~i~-~~~~p~~vvLVvda~~~~--~~~----~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
...++|+||||.... .......+.... .....+.+++|+|++... ... ..+......-...-+|+||+|...
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 236789999998432 223333332222 233468899999995432 221 222322211123458999999743
No 350
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=97.17 E-value=0.014 Score=58.69 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 199 VSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 199 ta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+++++|.+++++|++|++||+|+..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3678899999999999999999864
No 351
>PRK08840 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.13 Score=55.40 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..++++.|.+|+|||+++.++|...+ ++|++|+++..+.-....... ..+...+++...... .+...++ +..+
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~R--lla~~s~v~~~~i~~~~l~~~e~~~~~~a 293 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMR--MLASLSRVDQTKIRTGQLDDEDWARISST 293 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHH--HHHhhCCCCHHHHhcCCCCHHHHHHHHHH
Confidence 457899999999999999999998876 469999999988653332222 233444554422211 2333333 2333
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+..+. ....+-|-|+++..- ..+.+.+.++.... ...-++|||-
T Consensus 294 ~~~l~-~~~~l~I~d~~~~ti--~~i~~~~r~~~~~~-~~~~lvvIDY 337 (464)
T PRK08840 294 MGILM-EKKNMYIDDSSGLTP--TEVRSRARRIAREH-GGLSMIMVDY 337 (464)
T ss_pred HHHHH-hcCCEEEECCCCCCH--HHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 44442 234566667776531 23333433333221 1123667775
No 352
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.16 E-value=0.0011 Score=57.52 Aligned_cols=68 Identities=31% Similarity=0.419 Sum_probs=44.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
|++.|++|+||||++..+|..+ |..+.-+++...... ........+...+..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS--------------------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS--------------------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc--------------------cccccccccccccccccccc
Confidence 5789999999999999999876 567776666532100 11223444556666664343
Q ss_pred -CcEEEEcCCCC
Q 011624 266 -VDVVIVDTAGR 276 (481)
Q Consensus 266 -~D~VIIDt~G~ 276 (481)
.-+++||-...
T Consensus 58 ~~~vl~iDe~d~ 69 (132)
T PF00004_consen 58 KPCVLFIDEIDK 69 (132)
T ss_dssp TSEEEEEETGGG
T ss_pred cceeeeeccchh
Confidence 57888877543
No 353
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.16 E-value=0.00091 Score=64.20 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCccc---cHHHHHHHHhhhhc--cCCceEEEEEeCc--ch--HHHHHHH-HHhhhc-CCeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAM--TG--QEAAALV-TTFNIE-IGITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~--~~p~~vvLVvda~--~~--~~~~~~~-~~f~~~-~~i~GvIlnKv 332 (481)
.+..+.||||||..+. +.....++.+.... ..|+.++||++.. +. ...++.+ ..|.+. .+-.-||+|..
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 4677999999998654 34455566554332 3467789999873 22 2233333 345433 23456788988
Q ss_pred CCC
Q 011624 333 DGD 335 (481)
Q Consensus 333 D~~ 335 (481)
|..
T Consensus 127 d~~ 129 (212)
T PF04548_consen 127 DEL 129 (212)
T ss_dssp GGG
T ss_pred ccc
Confidence 753
No 354
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0073 Score=63.07 Aligned_cols=154 Identities=23% Similarity=0.304 Sum_probs=84.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH---HHcCCeEEEEecc-CCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYL---KKQGKSCMLVAGD-VYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L---~~~G~kVlLId~D-~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
.+..++..++-+||||++-+|..+= ...|- |- +- ..+-+..|++ ...+.-|+.+...-.
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~-Vk---~rk~~~~a~SDWM-~iEkqRGISVtsSVM------------ 74 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGT-VK---GRKSGKHAKSDWM-EIEKQRGISVTSSVM------------ 74 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcce-ee---eccCCcccccHHH-HHHHhcCceEEeeEE------------
Confidence 4678888999999999999997532 22220 00 00 1122223333 455566777653311
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH--HHHHHHHh-hhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--AAALVTTF-NIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~--~~~~~~~f-~~~~~i~GvIlnKvD~~ 335 (481)
.+...++-+-|+||||.-........-| -+ .|..++|+|+.-|-+ .....+.- ...++| --.+||+|..
T Consensus 75 -qF~Y~~~~iNLLDTPGHeDFSEDTYRtL----tA--vDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI-~TFiNKlDR~ 146 (528)
T COG4108 75 -QFDYADCLVNLLDTPGHEDFSEDTYRTL----TA--VDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPI-FTFINKLDRE 146 (528)
T ss_pred -EeccCCeEEeccCCCCccccchhHHHHH----Hh--hheeeEEEecccCccHHHHHHHHHHhhcCCce-EEEeeccccc
Confidence 1112466788999999865432222222 11 177899999965522 22222211 123444 3578999965
Q ss_pred Cc--hhHHHHHHHHhCC---CeE-EeecCCCC
Q 011624 336 SR--GGAALSVKEVSGK---PIK-LVGRGERM 361 (481)
Q Consensus 336 ~~--~g~~~~~~~~~gl---PV~-~ig~g~~v 361 (481)
.+ ...+-++.+.+++ |+. -||.|...
T Consensus 147 ~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F 178 (528)
T COG4108 147 GRDPLELLDEIEEELGIQCAPITWPIGMGKDF 178 (528)
T ss_pred cCChHHHHHHHHHHhCcceecccccccCCccc
Confidence 44 3444556666665 443 46666544
No 355
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.15 E-value=0.0039 Score=63.74 Aligned_cols=146 Identities=26% Similarity=0.352 Sum_probs=80.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc-CCchhHHHHHH-Hhhhhc-----------------CCCee
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAAIDQLV-ILGEQV-----------------GVPVY 242 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D-~~rp~aidql~-~~~~~~-----------------gv~v~ 242 (481)
+|.+-++.-..|+|||+++..+++.|+.+|++|.+|..- +||..-+++.- .+.+.. .++..
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg 205 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTG 205 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccccc
Confidence 454444444499999999999999999999999987763 34433222110 111111 11111
Q ss_pred cCC-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-hHHHHHHHHHhhh
Q 011624 243 TAG-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNI 320 (481)
Q Consensus 243 ~~~-~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~~~~~~~~~~f~~ 320 (481)
... ...+-...++ +.. +..|+|+.|+.+..- --+.|+.-+.|+|+.. +++ +..|-.
T Consensus 206 ~~vlAGvdy~~vlk----e~~-~~aD~IlwdGgnndf-------------Pfvkpd~~Ivvvda~rpg~e----i~~~pG 263 (449)
T COG2403 206 GGVLAGVDYGTVLK----EGE-KEADFILWDGGNNDF-------------PFVKPDLHIVVVDALRPGEE----IGSFPG 263 (449)
T ss_pred cceEeeeeHHHHHH----HHh-hhccEEEEeCCCCCC-------------CcccCCeeEEEecCCCCchh----hccCCC
Confidence 000 0111122233 322 445999999976531 1234678888999954 444 334433
Q ss_pred cCCe---eEEEEcCCCCCCch--hHHHHHHHHhC
Q 011624 321 EIGI---TGAILTKLDGDSRG--GAALSVKEVSG 349 (481)
Q Consensus 321 ~~~i---~GvIlnKvD~~~~~--g~~~~~~~~~g 349 (481)
.+++ +-||+||+|....+ ..+....++.+
T Consensus 264 e~~irlAD~VIItkveea~~~kvrkI~~~I~~iN 297 (449)
T COG2403 264 ELRIRLADLVIITKVEEAMAEKVRKIVRNIEEIN 297 (449)
T ss_pred ceeeeeccEEEEecccccchHHHHHHHHHHHhhC
Confidence 3332 56899999976554 23344444444
No 356
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0022 Score=63.44 Aligned_cols=79 Identities=30% Similarity=0.483 Sum_probs=53.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++.=+++.|++|+|||.++++++..+.+.|.+|+++.. |+.+..++.--.. + .... +....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~~~~--------~---~~~~---~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAAFDE--------G---RLEE---KLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH----HHHHHHHHHHHhc--------C---chHH---HHHHHh
Confidence 34568899999999999999999999988999997654 3445555321111 0 0011 122223
Q ss_pred HcCCCcEEEEcCCCCcccc
Q 011624 262 KKKNVDVVIVDTAGRLQID 280 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d 280 (481)
..+|+.|||=-|....+
T Consensus 166 --~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFS 182 (254)
T ss_pred --hcCCEEEEecccCccCC
Confidence 58999999998886543
No 357
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.15 E-value=0.013 Score=62.62 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
-+++.|++|+|||+++..++..+.+.|.+|.+++++.|-....+.+. .+ . . +.+... ..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~------------~~---~-~----~~f~~~-~~ 201 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIR------------SG---E-M----QRFRQF-YR 201 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHh------------cc---h-H----HHHHHH-cc
Confidence 46788999999999999999999888999999987754322222210 00 0 1 112221 25
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhh
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVK 291 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~ 291 (481)
.+|+++||-.+.+........++-.+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~ 228 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTF 228 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHH
Confidence 789999998877654333334444443
No 358
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.15 E-value=0.0066 Score=65.02 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..++++|.+|+||||+...|. |.++.++..- |+. ....+.. .+..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~gt-----------T~d~~~~---------------~i~~ 260 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL------GEERAIVTDI---AGT-----------TRDVIEE---------------HINL 260 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---CCc-----------ccccEEE---------------EEEE
Confidence 467888999999999998886 3332222111 110 0000000 0012
Q ss_pred CCCcEEEEcCCCCccccHHHHHH--HH-hhhhccCCceEEEEEeCcchH--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDE--LK-DVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~e--l~-~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||..... ..... +. ........+.+++|+|++... +....... .... ..-+|+||+|...
T Consensus 261 ~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~-piiiV~NK~DL~~ 335 (449)
T PRK05291 261 DGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-LKDK-PVIVVLNKADLTG 335 (449)
T ss_pred CCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-cCCC-CcEEEEEhhhccc
Confidence 45678999999974321 11111 11 111222357889999985432 21222222 2222 3458999999743
No 359
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.14 E-value=0.0082 Score=55.14 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=51.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE---EeccCCchhHHHHHHHhhhhcCCCeecCCCC-----CCHHH---H
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCML---VAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-----VKPSQ---I 253 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlL---Id~D~~rp~aidql~~~~~~~gv~v~~~~~~-----~~~~~---~ 253 (481)
.|.+.+.+|.||||.+..+|...+.+|++|.+ +-++.. .+-..-+..+ .++.++..+.. .++.+ .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~-~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWK-YGELKALERL---PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCc-cCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHHH
Confidence 44444555999999999999999999999998 444311 1222222222 24555443321 12222 1
Q ss_pred HHHHH----HHHHcCCCcEEEEcCCCC
Q 011624 254 AKQGL----EEAKKKNVDVVIVDTAGR 276 (481)
Q Consensus 254 l~~~l----~~~~~~~~D~VIIDt~G~ 276 (481)
.++.+ +.+....||++|+|=-+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHh
Confidence 22222 233456899999998644
No 360
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.14 E-value=0.0084 Score=63.08 Aligned_cols=140 Identities=20% Similarity=0.242 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCccccccccC-CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeccCCchhHHHHHHHhhh
Q 011624 158 VKIVRDELVKLMGGEVSELVFAK-SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGE 235 (481)
Q Consensus 158 ~~~l~~~L~~~l~~~~~~~~~~~-~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~-kVlLId~D~~rp~aidql~~~~~ 235 (481)
...+.+++.+.+. ......... ..|.-++++|.+.+||||+...|. |. +|. ++.- |+.
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~I-v~~~---aGT--------- 212 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVI-VSDI---AGT--------- 212 (444)
T ss_pred HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEE-ecCC---CCc---------
Confidence 3456677777763 111111111 246788999999999999998886 43 443 2111 110
Q ss_pred hcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCcccc--------HHHHHHHHhhhhccCCceEEEEEeCcc
Q 011624 236 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--------KAMMDELKDVKRVLNPTEVLLVVDAMT 307 (481)
Q Consensus 236 ~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d--------~~~~~el~~i~~~~~p~~vvLVvda~~ 307 (481)
-.+.+.. .+..++..|++|||+|.=... -.....+..+. ..+-++||+|+..
T Consensus 213 --TRD~I~~---------------~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~---~a~vvllviDa~~ 272 (444)
T COG1160 213 --TRDSIDI---------------EFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIE---RADVVLLVIDATE 272 (444)
T ss_pred --cccceee---------------eEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHh---hcCEEEEEEECCC
Confidence 0111100 011356679999999864221 11222222222 2477899999965
Q ss_pred h--HHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 308 G--QEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 308 ~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
+ ..-...+......-.-.-|++||.|.-.+
T Consensus 273 ~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 273 GISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 5 22222332222222334588999996543
No 361
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.14 E-value=0.0027 Score=58.15 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
+++.+.++|+||.... ..+. .. .....+.+++|+|++...+. ......+.. .-.+.-+|.||.|...
T Consensus 41 ~~~~~~i~D~~G~~~~-~~~~---~~--~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 41 DKYEVCIFDLGGGANF-RGIW---VN--YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CCEEEEEEECCCcHHH-HHHH---HH--HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 4677899999996321 1111 11 11245788999998654322 222222211 1123458899999643
No 362
>PLN03118 Rab family protein; Provisional
Probab=97.14 E-value=0.0027 Score=60.48 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-++++|.+||||||+...|+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~ 35 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFI 35 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 457788999999999998885
No 363
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0083 Score=66.02 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-++|.|++|+|||.++..++.++.+ .|++|.+++++-|-......+. .+ . . ....+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~-----~~----------~-~---~~f~~~y- 375 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR-----DG----------K-G---DSFRRRY- 375 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH-----hc----------c-H---HHHHHHh-
Confidence 4788999999999999999998875 4899999988755322221110 00 0 0 1112222
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
..+|++|||-.+.+......-.++-.+.+
T Consensus 376 -~~~DLLlIDDIq~l~gke~tqeeLF~l~N 404 (617)
T PRK14086 376 -REMDILLVDDIQFLEDKESTQEEFFHTFN 404 (617)
T ss_pred -hcCCEEEEehhccccCCHHHHHHHHHHHH
Confidence 57899999998877554333344434443
No 364
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.13 E-value=0.0043 Score=70.39 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHH-hhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~-f~~~~~i~GvIlnKvD~~ 335 (481)
+++.+.+|||||... +..++...+.. .|.+++|+|+..+ ......++. .....++ -+++||+|..
T Consensus 85 ~~~~i~liDtPG~~d----f~~~~~~~l~~--~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVD----FGGDVTRAMRA--VDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccC----hHHHHHHHHHh--cCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchhh
Confidence 356789999999864 33444433333 3788999998554 111122221 1223343 5889999954
No 365
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.13 E-value=0.0042 Score=65.93 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc--h---H--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--G---Q--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~--~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
+++.+.|+||||.-... ..+.. .....+.+++|+|+.. + + .....+..+. ....-+++||+|...
T Consensus 82 ~~~~i~liDtpG~~~~~----~~~~~--~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV----KNMIT--GASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCcccch----hhHhh--chhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEcccccc
Confidence 57789999999963221 22211 1224588899999964 3 1 1122222222 222457899999753
No 366
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.13 E-value=0.0037 Score=55.76 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+|+||||++..|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6788999999999998886
No 367
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.12 E-value=0.0022 Score=62.66 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
..+++.|++|+|||+++..++..+.++|++|.++.+|.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 46889999999999999999999888899999888763
No 368
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.12 E-value=0.0014 Score=65.82 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+++|+++|++||||||++..|+..+. ...+++.|.+|
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHH
Confidence 46899999999999999999987662 45778888765
No 369
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.11 E-value=0.0059 Score=64.74 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch------HHH---HHHHHHhhhc--CCeeEEEEc
Q 011624 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEA---AALVTTFNIE--IGITGAILT 330 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~------~~~---~~~~~~f~~~--~~i~GvIln 330 (481)
+..++|+|+||.... ...+..+. +...-..+.+++|+|++.. .+. ...+..|.+. -...-||+|
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~f--Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQF--LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHH--HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 456999999997531 11222221 1111224778999998421 111 2223344332 134568999
Q ss_pred CCCCCCchhHHHHHHHHhCCCeEEee
Q 011624 331 KLDGDSRGGAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 331 KvD~~~~~g~~~~~~~~~glPV~~ig 356 (481)
|+|.......+..+....+.|+..+.
T Consensus 283 K~DL~~~~e~l~~l~~~l~~~i~~iS 308 (424)
T PRK12297 283 KMDLPEAEENLEEFKEKLGPKVFPIS 308 (424)
T ss_pred CCCCcCCHHHHHHHHHHhCCcEEEEe
Confidence 99974333334455556666664443
No 370
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.11 E-value=0.0031 Score=66.59 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+++.+.||||||... +..++... ....+.+++|+|+..+ + +....+..+. .+..-+++||+|..
T Consensus 78 ~~~~~~liDtPGh~~----f~~~~~~~--~~~aD~allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviNK~D~~ 146 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ----YTRNMATG--ASTADLAVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVNKMDLV 146 (406)
T ss_pred CCeEEEEEeCCCHHH----HHHHHHHH--HhhCCEEEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEEecccc
Confidence 566799999999532 33333222 2245889999999544 1 2223333222 22234689999964
No 371
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.11 E-value=0.0032 Score=57.95 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+|+||||++.++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47799999999999998775
No 372
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.11 E-value=0.0049 Score=66.50 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.++|||||+...|.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls 180 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALS 180 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHh
Confidence 357888999999999998886
No 373
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.10 E-value=0.0071 Score=55.06 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-+++.|++||||||+...|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh
Confidence 4568889999999999998775
No 374
>PRK13695 putative NTPase; Provisional
Probab=97.10 E-value=0.028 Score=51.96 Aligned_cols=31 Identities=42% Similarity=0.542 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
.++++|.+|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4788999999999999999988887788765
No 375
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.10 E-value=0.0033 Score=72.45 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
++-+-||||||... ...++...+. ..+.+++|+|+..| + ....++.. .+++ .-+++||+|..
T Consensus 97 ~~~inliDtPGh~d----F~~e~~~al~--~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p-~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALG--ERIR-PVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH----HHHHHHHHHh--hcCEEEEEEECCCCCcccHHHHHHHHHH--CCCC-EEEEEECCccc
Confidence 45578999999854 4555533333 34888999999655 1 22222222 2233 45899999976
No 376
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.10 E-value=0.0014 Score=72.08 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~r 223 (481)
+++.+|+++|.+|+||||++..|+..|.. .|.++.++|.|..|
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 46789999999999999999999999986 78899999999664
No 377
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.09 E-value=0.003 Score=55.77 Aligned_cols=19 Identities=53% Similarity=0.672 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|++||||||+...|.
T Consensus 2 i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc
Confidence 6789999999999998774
No 378
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.09 E-value=0.0025 Score=70.51 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+-++++|..|+||||++..|...... ++...+...+.+.+ ......|+.+........ .....
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~-------i~~~~~~~~~~D~~-~~ErerGiTi~~~~v~~~--------~~~~~ 66 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGA-------ISEREMREQVLDSM-DLERERGITIKAQAVRLN--------YKAKD 66 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCC-------CccccccccccCCC-hHHHhcCCCeeeeEEEEE--------EEcCC
Confidence 356889999999999999888753210 00000111111111 001122333321100000 00000
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCCC-ch
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-RG 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~~-~~ 338 (481)
...+.+.|+||||... ...++..... ..+.+++|+|+..+ ++..........++. .-+++||+|... ..
T Consensus 67 g~~~~l~liDTPG~~d----F~~~v~~~l~--~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~ 139 (595)
T TIGR01393 67 GETYVLNLIDTPGHVD----FSYEVSRSLA--ACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSADP 139 (595)
T ss_pred CCEEEEEEEECCCcHH----HHHHHHHHHH--hCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCH
Confidence 1246789999999854 3333333333 34788999999654 222211122222343 458899999643 22
Q ss_pred hHH-HHHHHHhCCC
Q 011624 339 GAA-LSVKEVSGKP 351 (481)
Q Consensus 339 g~~-~~~~~~~glP 351 (481)
... ..+....+.+
T Consensus 140 ~~~~~el~~~lg~~ 153 (595)
T TIGR01393 140 ERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHHhCCC
Confidence 222 3444555653
No 379
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.09 E-value=0.0022 Score=69.04 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-----HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-----~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+++.++||||||.- .+..++..- ....+.+++|+|+..+. .....+..+. ++..-|++||+|..
T Consensus 105 ~~~~i~~iDTPGh~----~f~~~~~~~--l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGHE----QYTRNMATG--ASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCcH----HHHHHHHHH--HhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeeccc
Confidence 56789999999943 233333222 23458899999995441 2222333232 23334799999965
No 380
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.08 E-value=0.0039 Score=65.45 Aligned_cols=148 Identities=23% Similarity=0.333 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh--HHHHH---HHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQL---VILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~--aidql---~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
+=|++..+---||||+.-+|.. +.| +||.. ..+.. ..+.+.-|+.++...+..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLk---QSG---------tf~~~e~v~ERvMDSnDlEkERGITILaKnTav---------- 63 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLK---QSG---------TFREREEVAERVMDSNDLEKERGITILAKNTAV---------- 63 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHh---hcc---------ccccccchhhhhcCccchhhhcCcEEEecccee----------
Confidence 3466667777899999988753 222 22211 00000 012234567776543321
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.++++.+-||||||... +-.|+..++..+ |.++|+|||.-| |.-.-.-+++...+++. ||+||+|..
T Consensus 64 ---~~~~~~INIvDTPGHAD----FGGEVERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp 133 (603)
T COG1217 64 ---NYNGTRINIVDTPGHAD----FGGEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRP 133 (603)
T ss_pred ---ecCCeEEEEecCCCcCC----ccchhhhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCC
Confidence 25788999999999865 345666666654 889999999433 44333335555555543 889999954
Q ss_pred -Cc-hhHH---HHHH-------HHhCCCeEEeecCCCCCC
Q 011624 336 -SR-GGAA---LSVK-------EVSGKPIKLVGRGERMED 363 (481)
Q Consensus 336 -~~-~g~~---~~~~-------~~~glPV~~ig~g~~v~d 363 (481)
++ ...+ +.+. ++++.|+.|-........
T Consensus 134 ~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 134 DARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 23 2222 2222 346788887665544433
No 381
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.08 E-value=0.0094 Score=60.74 Aligned_cols=42 Identities=36% Similarity=0.512 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
+| .++++|+.-+||||++.-|..|..++|++++.++.|+..+
T Consensus 103 GP-rv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 103 GP-RVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred CC-EEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 45 5667899999999999999999999999999999999763
No 382
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.07 E-value=0.018 Score=65.28 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=62.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..|+++|.++|||||+...|. |.+..+++- .|+. + ...... ...+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~---~pGv-----T------~d~~~~---------------~~~~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED---TPGV-----T------RDRVSY---------------DAEW 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC---CCCe-----e------EEEEEE---------------EEEE
Confidence 468899999999999998886 333332221 1111 0 000000 0012
Q ss_pred CCCcEEEEcCCCCcccc----HHHHHHHHhhhhccCCceEEEEEeCcchHHH--HHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQID----KAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d----~~~~~el~~i~~~~~p~~vvLVvda~~~~~~--~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.+..+.++||||..... ..+....... ...++.+++|+|+..+... ...+..+...-...-+|+||+|....
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIA--VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHH--HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 45678999999965321 1122222111 2245889999999543111 12222222222345578999997543
No 383
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.06 E-value=0.0029 Score=56.35 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HH---HHhhh-cCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LV---TTFNI-EIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~---~~f~~-~~~i~GvIlnKvD~~~~ 337 (481)
.+.+.++|+||.... ...... ... ..+.+++|+|.....+... .. ..... .....-+|+||+|....
T Consensus 46 ~~~~~l~D~~g~~~~-~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 46 TYTLDILDTAGQEEF-SAMRDL---YIR--QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEEECCChHHH-HHHHHH---HHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 466889999996431 111111 111 2377888888855433221 11 22221 12345689999996542
Q ss_pred ----hhHHHHHHHHhCCCe
Q 011624 338 ----GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV 352 (481)
...+.......+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~ 138 (160)
T cd00876 120 RQVSKEEGKALAKEWGCPF 138 (160)
T ss_pred ceecHHHHHHHHHHcCCcE
Confidence 233344555555565
No 384
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.06 E-value=0.0019 Score=57.94 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHHh-h---hcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF-N---IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~f-~---~~~~i~GvIlnKvD~~~~ 337 (481)
++++.++|+||.... ...... ... ..+.+++|+|+........ ....+ . ..-...-++.||+|...+
T Consensus 42 ~~~~~i~D~~G~~~~-~~~~~~---~~~--~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 42 NVSFTVWDVGGQDKI-RPLWKH---YYE--NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred CEEEEEEECCCChhh-HHHHHH---Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 567999999997532 111111 111 3478899999975532222 22211 1 111234577999997543
No 385
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.06 E-value=0.0028 Score=58.90 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=47.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId-~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
+++++|++|+||||++..|+..+ |.++.+++ ++++.....+.+..|...-+-.......+.+.. +.+... .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~----~~i~~~-~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLA----ELLRAD-A 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHH----HHHHhh-c
Confidence 68899999999999999998654 44544444 456655444444444433333333332222222 223332 1
Q ss_pred CCCcEEEEcCCCC
Q 011624 264 KNVDVVIVDTAGR 276 (481)
Q Consensus 264 ~~~D~VIIDt~G~ 276 (481)
.+.++|+||+-..
T Consensus 75 ~~~~~VlID~Lt~ 87 (170)
T PRK05800 75 APGRCVLVDCLTT 87 (170)
T ss_pred CCCCEEEehhHHH
Confidence 3456888888543
No 386
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00064 Score=65.28 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.+|.++|.+||||||++..|...|... +|.+|..|.|
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y 45 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY 45 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence 45788899999999999999999888744 8999999976
No 387
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.05 E-value=0.0046 Score=58.49 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+|+||||+...|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999998886
No 388
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.04 E-value=0.00091 Score=70.09 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=38.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+|.||.|+|++|+||||++..|...+...|.+|..|..|-|-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3689999999999999999999988887778999999999764
No 389
>PRK08116 hypothetical protein; Validated
Probab=97.04 E-value=0.032 Score=55.62 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.-+++.|++|+|||.++..++..+.++|.+|++++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4578899999999999999999999889999988754
No 390
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.03 E-value=0.0096 Score=53.43 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+|+||||+...+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~ 23 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFI 23 (164)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47788999999999987775
No 391
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.03 E-value=0.0053 Score=57.97 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+||||||++..+.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357888999999999997775
No 392
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0015 Score=59.93 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
+++++++|.+||||||++..+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999997776655
No 393
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.02 E-value=0.0067 Score=55.39 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh---hcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~---~~~~i~GvIlnKvD~~~ 336 (481)
++..+.++|+||..... .+... . ....+.+++|+|++...+. ...+..+. ...+ .-+|.||.|...
T Consensus 42 ~~~~l~i~Dt~G~~~~~-~~~~~---~--~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~ 113 (164)
T cd04162 42 QDAIMELLEIGGSQNLR-KYWKR---Y--LSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPA 113 (164)
T ss_pred CCeEEEEEECCCCcchh-HHHHH---H--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcC
Confidence 45678999999874321 11111 1 1234788999998654322 22222221 2233 448899999643
No 394
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.003 Score=69.25 Aligned_cols=134 Identities=23% Similarity=0.236 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.++++|.+.|||||+-..|. ....+|. +-.|+.+..... .++.+
T Consensus 5 ~valvGNPNvGKTtlFN~LT----G~~q~Vg-------------------NwpGvTVEkkeg-------------~~~~~ 48 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT----GANQKVG-------------------NWPGVTVEKKEG-------------KLKYK 48 (653)
T ss_pred eEEEecCCCccHHHHHHHHh----ccCceec-------------------CCCCeeEEEEEE-------------EEEec
Confidence 58999999999999998876 1123343 223444432111 01135
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHh--hhhccCCceEEEEEeCcchHHHHHHH-HHhhhcCCeeEEEEcCCCCCCchhHH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQEAAALV-TTFNIEIGITGAILTKLDGDSRGGAA 341 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~--i~~~~~p~~vvLVvda~~~~~~~~~~-~~f~~~~~i~GvIlnKvD~~~~~g~~ 341 (481)
+.++-|||.||..+-+..+.+|... .+..-+||-++-|+||+.-+...... +-+.-+.+ .-+.+|++|...+.|.-
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRGIR 127 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCCc
Confidence 6789999999987654333333321 22234578899999996544333322 22222233 55789999998776654
Q ss_pred ---HHHHHHhCCCeEEe
Q 011624 342 ---LSVKEVSGKPIKLV 355 (481)
Q Consensus 342 ---~~~~~~~glPV~~i 355 (481)
..+.+..|+||..+
T Consensus 128 ID~~~L~~~LGvPVv~t 144 (653)
T COG0370 128 IDIEKLSKLLGVPVVPT 144 (653)
T ss_pred ccHHHHHHHhCCCEEEE
Confidence 45667789999643
No 395
>PLN02796 D-glycerate 3-kinase
Probab=97.02 E-value=0.0026 Score=65.33 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+|.++.++|++||||||++..|...+...|.++..|..|-|-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 678999999999999999999999888778888888888764
No 396
>PTZ00301 uridine kinase; Provisional
Probab=97.02 E-value=0.0012 Score=63.42 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=33.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~-G-~kVlLId~D~~r 223 (481)
-.+|.++|++||||||++.+|+..+... | ..|.++..|-|-
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 3689999999999999999999888643 4 457788888773
No 397
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.00 E-value=0.0018 Score=58.65 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-++++|.+|+||||++..+.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357788999999999998763
No 398
>PRK10218 GTP-binding protein; Provisional
Probab=97.00 E-value=0.0045 Score=68.57 Aligned_cols=122 Identities=24% Similarity=0.297 Sum_probs=63.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH---HcCC-eEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK---KQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~---~~G~-kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
-+-|+++|..|+||||++..|..... +.+. .-.+.|.+. .....|+.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~-----------~E~erGiTi~~~~~------------ 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSND-----------LEKERGITILAKNT------------ 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeecccc-----------ccccCceEEEEEEE------------
Confidence 46789999999999999988864211 1110 001111111 01112332221100
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHH-hhhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTT-FNIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~-f~~~~~i~GvIlnKvD~~ 335 (481)
.+.++++.+.|+||||.... ..++..... ..+.+++|+|+..+. ........ ....+++ -+++||+|..
T Consensus 62 -~i~~~~~~inliDTPG~~df----~~~v~~~l~--~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~~ 133 (607)
T PRK10218 62 -AIKWNDYRINIVDTPGHADF----GGEVERVMS--MVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRP 133 (607)
T ss_pred -EEecCCEEEEEEECCCcchh----HHHHHHHHH--hCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCCC
Confidence 01135788999999997542 223322333 348889999996541 11111111 2223444 5889999964
No 399
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.00 E-value=0.008 Score=68.05 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCccc-----cHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~-----d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+.++.++||||.... .......+......-..+.+++|+|++.+ ......+......-...-+|+||+|...
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 4567889999995321 11222222222222345788999999544 2222233322222234558999999643
No 400
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.99 E-value=0.0028 Score=57.62 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=14.9
Q ss_pred EEcCCCCCHHHHHHHHH
Q 011624 188 LAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 188 i~G~~GvGKTTta~~LA 204 (481)
+.|++||||||+...|.
T Consensus 1 iiG~~~~GKStll~~l~ 17 (176)
T cd01881 1 LVGLPNVGKSTLLNALT 17 (176)
T ss_pred CCCCCCCcHHHHHHHHh
Confidence 46999999999998876
No 401
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.99 E-value=0.0064 Score=55.32 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH---H---HHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---V---TTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~---~---~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|.||||.... ..... ... -..+.+++|.|.....+.... . ..+...-...-+|.||.|....
T Consensus 51 ~~~l~l~D~~g~~~~-~~~~~---~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 51 KIKLQIWDTAGQERF-RTITT---AYY--RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEEeCCchHHH-HHHHH---HHh--CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 356789999996321 11111 111 234788999998655432221 1 2221111234588899996422
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+...+...+.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 125 VVSKEEGEALADEYGIKFL 143 (167)
T ss_pred CCCHHHHHHHHHHcCCEEE
Confidence 2233455556666663
No 402
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.99 E-value=0.006 Score=55.40 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHh---hhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF---NIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f---~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.+.||||.... ..+. ... ....+.+++|.|.....+.. ...... .......-+|.||+|....
T Consensus 49 ~~~~~l~Dt~g~~~~--~~~~--~~~--~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERY--RTIT--TAY--YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHH--HHHH--HHH--ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 356889999986321 1111 111 12347788899985443222 111122 1112235688999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
......+....+.|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 123 VVSSERGRQLADQLGFEFF 141 (165)
T ss_pred ccCHHHHHHHHHHcCCEEE
Confidence 2333445566666653
No 403
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.98 E-value=0.0023 Score=71.45 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
++..++||||||... +...+.. .....|.++||+|+..+ + +....+..+. .+..-|++||+|..
T Consensus 102 ~~~~~~liDtPG~~~----f~~~~~~--~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~D~~ 170 (632)
T PRK05506 102 PKRKFIVADTPGHEQ----YTRNMVT--GASTADLAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKMDLV 170 (632)
T ss_pred CCceEEEEECCChHH----HHHHHHH--HHHhCCEEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEecccc
Confidence 567899999999532 2222222 22245888999999544 1 2222333222 22334689999975
No 404
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00064 Score=69.97 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
+-|.+...-.+||||++..+.++- |+--. .+|.-..+.+.......+.-|+.+-..... +.|
T Consensus 38 rnigiiahidagktttterily~a---g~~~s--~g~vddgdtvtdfla~erergitiqsaav~-------------fdw 99 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLA---GAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVN-------------FDW 99 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHh---hhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeee-------------ccc
Confidence 456666777899999999986433 22111 122222222222223334456666543221 237
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH-HHHhhhcCCe-eEEEEcCCCCC-Cch-h
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-VTTFNIEIGI-TGAILTKLDGD-SRG-G 339 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~-~~~f~~~~~i-~GvIlnKvD~~-~~~-g 339 (481)
+++.+-+|||||... +.-|+...++++ +.++.|.|++.|.++... ++......++ ..+.+||+|.. +.. .
T Consensus 100 kg~rinlidtpghvd----f~leverclrvl--dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 100 KGHRINLIDTPGHVD----FRLEVERCLRVL--DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred ccceEeeecCCCcce----EEEEHHHHHHHh--cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhh
Confidence 899999999999875 334455555655 778999999777443221 2222222333 56789999954 333 3
Q ss_pred HHHHHHHHhCCC
Q 011624 340 AALSVKEVSGKP 351 (481)
Q Consensus 340 ~~~~~~~~~glP 351 (481)
.+.++.+..|..
T Consensus 174 avdsi~ekl~ak 185 (753)
T KOG0464|consen 174 AVDSIEEKLGAK 185 (753)
T ss_pred HHHHHHHHhCCc
Confidence 447788887754
No 405
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.98 E-value=0.0023 Score=61.84 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.|..+++.|++|+||||++..|+ .++++++.|--- ..+....++++...+.. .+.+.+.+.+..+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~-------~~l~g~~~~~v~~~d~~-~~~~~~~d~l~~~ 75 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSS-------KVLIGDENVDIADHDDM-PPIQAMVEFYVMQ 75 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccc-------hhccCCCCCceeecCCC-CCHHHHHHHHHHH
Confidence 36679999999999999998774 467888888521 11122223455443322 2333333444433
Q ss_pred H--cCCCcEEEEcCCCCc
Q 011624 262 K--KKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~--~~~~D~VIIDt~G~~ 277 (481)
. ..+||.||||+...+
T Consensus 76 ~~~~~~ydtVVIDsI~~l 93 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISAL 93 (220)
T ss_pred HhccccCCEEEEecHHHH
Confidence 2 257999999998664
No 406
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.97 E-value=0.011 Score=53.15 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|++.|.+||||||++..+.
T Consensus 3 i~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998875
No 407
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.97 E-value=0.0048 Score=55.46 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=43.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---H---HHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---L---VTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~---~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
.+.+.|+||||..... ....... ..++.+++|+|.....+... . ++.+. +.. ..-+|.||.|....
T Consensus 48 ~~~l~l~D~~G~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~ 120 (161)
T cd04113 48 RVKLQIWDTAGQERFR----SVTRSYY--RGAAGALLVYDITNRTSFEALPTWLSDARALASPNI-VVILVGNKSDLADQ 120 (161)
T ss_pred EEEEEEEECcchHHHH----HhHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEchhcchh
Confidence 4678899999963211 1111111 24578899999966533222 1 12222 222 34578899996432
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 011624 338 ----GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~ 353 (481)
...+.......+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 121 REVTFLEASRFAQENGLLFL 140 (161)
T ss_pred ccCCHHHHHHHHHHcCCEEE
Confidence 2233445556665553
No 408
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.96 E-value=0.012 Score=54.58 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec-cCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~-D~~r 223 (481)
+|++.|++||||||++..||..+ | +..++. |..|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECChHHH
Confidence 57889999999999999998765 4 344554 5554
No 409
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.036 Score=62.32 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=57.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-CCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGLEE 260 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-~~~~~~l~~~l~~ 260 (481)
+..++|+|+.|+||||++..||+.|.- .+. +..+.. .-.....+....-.+++..+.. ....+.+++.++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-----~~~PCG--~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~ 110 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGV-----TSQPCG--VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER 110 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCC-----CCCCCc--ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHH
Confidence 568889999999999999999988753 221 111110 0000111111111122222211 1223344555554
Q ss_pred HH----cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 261 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 261 ~~----~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+. ...|.++|||-.-++.. .....|.+++... +..+.|++-+
T Consensus 111 a~~~P~~gr~KVIIIDEah~LT~--~A~NALLKtLEEP-P~~v~FILaT 156 (830)
T PRK07003 111 AVYAPVDARFKVYMIDEVHMLTN--HAFNAMLKTLEEP-PPHVKFILAT 156 (830)
T ss_pred HHhccccCCceEEEEeChhhCCH--HHHHHHHHHHHhc-CCCeEEEEEE
Confidence 32 24688999999887743 2334444444432 2344555433
No 410
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.94 E-value=0.00091 Score=68.75 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 223 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~r 223 (481)
+++++|.+|+||||++..|+.+|. .+|++|.+++.|-+=
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 367899999999999999999997 689999999999753
No 411
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.94 E-value=0.001 Score=63.48 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.+++++|++|+||||++..|+..+.. ..+.++..|.|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 5679999999999999999999877653 56778888876
No 412
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.94 E-value=0.0014 Score=63.35 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=57.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
.+.+.|++|+|||.+..+++.++.+ .+.+|.+++++.|-....+.+.. + .. .+....+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~------------~---~~----~~~~~~~- 95 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD------------G---EI----EEFKDRL- 95 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT------------T---SH----HHHHHHH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc------------c---cc----hhhhhhh-
Confidence 4678999999999999999998876 47899999998775544443311 0 01 1223333
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
..+|+++||-...+........++-.+.+
T Consensus 96 -~~~DlL~iDDi~~l~~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 96 -RSADLLIIDDIQFLAGKQRTQEELFHLFN 124 (219)
T ss_dssp -CTSSEEEEETGGGGTTHHHHHHHHHHHHH
T ss_pred -hcCCEEEEecchhhcCchHHHHHHHHHHH
Confidence 68999999998766543333344444444
No 413
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.94 E-value=0.006 Score=54.76 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+||||||++..|.
T Consensus 3 i~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998875
No 414
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.93 E-value=0.0048 Score=56.82 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh-h---cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-I---EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~-~---~~~i~GvIlnKvD~~~ 336 (481)
.+..+.++|+||..... ....... ..++.+++|+|++...... .....+. . .-...-+++||+|...
T Consensus 57 ~~~~~~l~D~~G~~~~~----~~~~~~~--~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 KNIRFLMWDIGGQESLR----SSWNTYY--TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCeEEEEEECCCCHHHH----HHHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 35678999999974211 1111111 2457889999996553321 2122221 1 1123468999999643
No 415
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.93 E-value=0.0028 Score=70.74 Aligned_cols=45 Identities=29% Similarity=0.571 Sum_probs=41.0
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
.+|.+|+++|.+|+||||++..|+..|...|..+.+++.|.+|..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~ 502 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG 502 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc
Confidence 358899999999999999999999999888999999999998764
No 416
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.93 E-value=0.003 Score=69.84 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCCccccHHHHH-HHH-hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchh---
Q 011624 265 NVDVVIVDTAGRLQIDKAMMD-ELK-DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--- 339 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~-el~-~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g--- 339 (481)
+..+.++||||.........+ ++. .......++-+++|+|++..+..........+.-...-+++||+|...+.+
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~ 119 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRI 119 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChh
Confidence 456899999997543221111 111 111222468889999996544333333222211223458999999743322
Q ss_pred HHHHHHHHhCCCeEEee--cCCCCCC
Q 011624 340 AALSVKEVSGKPIKLVG--RGERMED 363 (481)
Q Consensus 340 ~~~~~~~~~glPV~~ig--~g~~v~d 363 (481)
....+.+..|.|+..+. .++++++
T Consensus 120 d~~~L~~~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 120 DEEKLEERLGVPVVPTSATEGRGIER 145 (591)
T ss_pred hHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 23456677889986444 3444444
No 417
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.92 E-value=0.0067 Score=54.75 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-++++|.+||||||+..+|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999998885
No 418
>PRK06921 hypothetical protein; Provisional
Probab=96.92 E-value=0.01 Score=59.16 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEec
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 219 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~ 219 (481)
..-+++.|++|+|||+++.++|..+.++ |++|+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3468889999999999999999999887 999998875
No 419
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.91 E-value=0.0055 Score=56.92 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
..+++.|++||||||+...|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 345899999999999998774
No 420
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.91 E-value=0.0035 Score=69.24 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+|.++++.|.+|+||||+..+|.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~ 27 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIR 27 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 56699999999999999998883
No 421
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.91 E-value=0.011 Score=60.83 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=59.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
=|.++|.++|||||+...|.. .++. |..-+|. +.....| ++.. ..
T Consensus 160 dVglVG~PNaGKSTLln~ls~------a~~~-va~ypfT--------T~~p~~G--~v~~------------------~~ 204 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSA------AKPK-IADYPFT--------TLHPNLG--VVRV------------------DD 204 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHc------CCCc-cCCCCCc--------eeCceEE--EEEe------------------CC
Confidence 367889999999999988852 1222 1111221 1111111 1110 12
Q ss_pred CCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch---HHH---HHHHHHhhhcC--CeeEEEEcCCC
Q 011624 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEA---AALVTTFNIEI--GITGAILTKLD 333 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~---~~~~~~f~~~~--~i~GvIlnKvD 333 (481)
...++|+|+||.... ...+..+..+ ..-..+.+++|+|++.. ++. ...+..|.+.+ ...-+|+||+|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flr--hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLK--HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHH--HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 346899999998632 1122222111 11124678999998532 222 22233443321 34568999999
Q ss_pred CC
Q 011624 334 GD 335 (481)
Q Consensus 334 ~~ 335 (481)
..
T Consensus 283 L~ 284 (335)
T PRK12299 283 LL 284 (335)
T ss_pred cC
Confidence 64
No 422
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.91 E-value=0.0045 Score=62.95 Aligned_cols=76 Identities=30% Similarity=0.346 Sum_probs=53.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+.-+.+.|++|+|||.++.++|..+.++|++|.++... ..+..++..- + .+ . ..+.+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~----~l~~~lk~~~---~-----~~---~----~~~~l~~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP----EFIRELKNSI---S-----DG---S----VKEKIDAV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH----HHHHHHHHHH---h-----cC---c----HHHHHHHh-
Confidence 34688899999999999999999999999999987664 4444442211 0 00 0 12334454
Q ss_pred cCCCcEEEEcCCCCccc
Q 011624 263 KKNVDVVIVDTAGRLQI 279 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~ 279 (481)
..+|++|||=-|....
T Consensus 216 -~~~dlLiIDDiG~e~~ 231 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQM 231 (306)
T ss_pred -cCCCEEEEecCCCccc
Confidence 5899999999886543
No 423
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.90 E-value=0.0017 Score=61.00 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=33.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
+.+|++.|..|+||||.+..|+.+|...|++|.++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4689999999999999999999999999999976543
No 424
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.89 E-value=0.006 Score=54.64 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHh------h-hcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF------N-IEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f------~-~~~~i~GvIlnKvD 333 (481)
.++.+.++||||.... ..+... . ....+.+++|+|++...+. ......+ . ... ..-+|+||+|
T Consensus 43 ~~~~~~l~Dt~G~~~~-~~~~~~---~--~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~NK~D 115 (162)
T cd04157 43 GNLSFTAFDMSGQGKY-RGLWEH---Y--YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRV-PILFFANKMD 115 (162)
T ss_pred CCEEEEEEECCCCHhh-HHHHHH---H--HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCC-CEEEEEeCcc
Confidence 4567889999997531 111111 1 1245888999999654322 1112211 1 122 3558999999
Q ss_pred CCC
Q 011624 334 GDS 336 (481)
Q Consensus 334 ~~~ 336 (481)
...
T Consensus 116 l~~ 118 (162)
T cd04157 116 LPD 118 (162)
T ss_pred ccC
Confidence 643
No 425
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.88 E-value=0.0077 Score=59.31 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=52.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHH---HHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA---KQGLE 259 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l---~~~l~ 259 (481)
+.+++++|++|+||||++..++..+...+. ..+....-.....+-+.......|++.-. ....+.. .+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~~~~~~~l~~i~~~lG~~~~~----~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTRVDAEDLLRMVAADFGLETEG----RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCCCCHHHHHHHHHHHcCCCCCC----CCHHHHHHHHHHHHH
Confidence 458899999999999999999877764332 22221111122223344455556665321 1222222 22222
Q ss_pred H-HHcCCCcEEEEcCCCCccccHHHHHHHHhhh
Q 011624 260 E-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 291 (481)
Q Consensus 260 ~-~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~ 291 (481)
. ...+..-++|||-+-.+. ......+..+.
T Consensus 117 ~~~~~~~~~vliiDe~~~l~--~~~~~~l~~l~ 147 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT--PELLEELRMLS 147 (269)
T ss_pred HHHhCCCCeEEEEECcccCC--HHHHHHHHHHh
Confidence 1 223455688888876553 23344444443
No 426
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0067 Score=66.73 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
++.|++|+||+|||||+++..+|.+|-++=+|..
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfS 470 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFS 470 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEe
Confidence 5679999999999999999999999976544433
No 427
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.87 E-value=0.0015 Score=60.96 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
+|++.|+.||||||++..|+.+|..+|++|..+.-
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68899999999999999999999999999975543
No 428
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.87 E-value=0.006 Score=55.80 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh--c--CCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI--E--IGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~--~--~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||..... ..... .. ...+.+++|+|.+..++.. .....+.. . -...-++.||.|...
T Consensus 41 ~~~~i~l~Dt~G~~~~~-~~~~~---~~--~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 41 KNLKFTIWDVGGKHKLR-PLWKH---YY--LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CCEEEEEEECCCChhcc-hHHHH---Hh--ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 45678999999964321 11111 11 2347889999986543222 21222211 1 123557899999753
No 429
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.87 E-value=0.009 Score=54.43 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-++++|.+||||||++..+.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57888999999999998774
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0011 Score=62.11 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ccCCchhH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAA 226 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId-~D~~rp~a 226 (481)
-|++.|++|+||||.|.+||.. ..+.-+| .|.+|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~-----~~i~hlstgd~~r~~~ 39 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK-----LGLPHLDTGDILRAAI 39 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-----hCCcEEcHhHHhHhhh
Confidence 3678899999999999999876 3445556 55666553
No 431
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.85 E-value=0.0053 Score=57.49 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.... ........ ...+.+++|+|.....+. . ..+..+...-.+.-+|.||.|....
T Consensus 49 ~~~~~i~Dt~G~~~~----~~~~~~~~--~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 49 KVKLQIWDTAGQERF----RSVTHAYY--RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEEEEEEeCCCcHHH----HHhhHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 456889999995321 11111111 234778999998554322 1 2222222211234578899996321
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
......+....+.|+
T Consensus 123 ~~~~~~~~~l~~~~~~~~ 140 (191)
T cd04112 123 VVKREDGERLAKEYGVPF 140 (191)
T ss_pred ccCHHHHHHHHHHcCCeE
Confidence 123344555566665
No 432
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.84 E-value=0.004 Score=59.29 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
.++++|++|||||++...|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 47788999999999987774
No 433
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.84 E-value=0.0052 Score=53.71 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+|+||||+...|.
T Consensus 3 ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999988775
No 434
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.84 E-value=0.0028 Score=57.12 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HH---HHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~---~~~f~~~~~i~GvIlnKvD~~ 335 (481)
....+.++||||.-. ...+... .. ..++.+++|.|.+...+.. .. +...... .+.-+|.||.|..
T Consensus 50 ~~~~l~i~Dt~G~~~-~~~~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~p~ilv~nK~Dl~ 120 (164)
T cd04101 50 NTVELFIFDSAGQEL-YSDMVSN---YW--ESPSVFILVYDVSNKASFENCSRWVNKVRTASKH-MPGVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEEECCCHHH-HHHHHHH---Hh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCEEEEEECcccc
Confidence 346789999998532 1111111 11 2458889999986543322 11 1222211 2345789999964
No 435
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.84 E-value=0.0053 Score=54.12 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+||||||+...|.
T Consensus 3 v~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6788999999999998774
No 436
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.84 E-value=0.0087 Score=53.62 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhhcC---CeeEEEEcCCCCCCch-
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGDSRG- 338 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~~~---~i~GvIlnKvD~~~~~- 338 (481)
+.+.++||||... ..... ..... ..+.+++|.|.....+. ......+.... ...-++.||+|...+.
T Consensus 49 ~~l~~~D~~G~~~-~~~~~---~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 49 VRLQLWDTAGQER-FRSLI---PSYIR--DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred EEEEEEECCCcHH-HHHHH---HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 4588999999642 11111 11222 34678899998654322 22222222111 2355889999973321
Q ss_pred ---hHHHHHHHHhCCCe
Q 011624 339 ---GAALSVKEVSGKPI 352 (481)
Q Consensus 339 ---g~~~~~~~~~glPV 352 (481)
..........+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~ 139 (161)
T cd01861 123 VSTEEGEKKAKELNAMF 139 (161)
T ss_pred cCHHHHHHHHHHhCCEE
Confidence 22334444555555
No 437
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.84 E-value=0.054 Score=56.54 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeccCCchhHHHHHHHhhhhc-CCCeecCCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYRPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G--~kVlLId~D~~rp~aidql~~~~~~~-gv~v~~~~~~~~~~~~l~~~l 258 (481)
.|..++++|++|+||||++..++..+.+.+ ..+..|+|....... .-+....... +.+.- .......+......
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~ 130 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY-AIFSEIARQLFGHPPP--SSGLSFDELFDKIA 130 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH-HHHHHHHHHhcCCCCC--CCCCCHHHHHHHHH
Confidence 345678999999999999999999987764 778888887654211 1111111211 11110 11223344444444
Q ss_pred HHHHc-CCCcEEEEcCCCCc
Q 011624 259 EEAKK-KNVDVVIVDTAGRL 277 (481)
Q Consensus 259 ~~~~~-~~~D~VIIDt~G~~ 277 (481)
+.+.. +..-+|+||-...+
T Consensus 131 ~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 131 EYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHhcCCEEEEEECCHhHh
Confidence 44332 33467888887655
No 438
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.84 E-value=0.0032 Score=60.58 Aligned_cols=92 Identities=15% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHH--HHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHH--HH
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLA--NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI--AK 255 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA--~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~--l~ 255 (481)
...+++++++|++|+||||+...++ ..++..|.-|. ++..+..+.+|+.. ....-..+..+......++ +.
T Consensus 26 ~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~---a~~~~~~~~d~i~~--~l~~~~si~~~~S~f~~el~~l~ 100 (213)
T cd03281 26 GGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP---ADSATIGLVDKIFT--RMSSRESVSSGQSAFMIDLYQVS 100 (213)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE---cCCcEEeeeeeeee--eeCCccChhhccchHHHHHHHHH
Confidence 3335899999999999999999988 45666676443 33344444444311 1111111111111111111 22
Q ss_pred HHHHHHHcCCCcEEEEcCCCCcc
Q 011624 256 QGLEEAKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 256 ~~l~~~~~~~~D~VIIDt~G~~~ 278 (481)
.++.. ..+..++|+|-|+..-
T Consensus 101 ~~l~~--~~~~slvllDE~~~gt 121 (213)
T cd03281 101 KALRL--ATRRSLVLIDEFGKGT 121 (213)
T ss_pred HHHHh--CCCCcEEEeccccCCC
Confidence 22222 3567899999998753
No 439
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.83 E-value=0.0083 Score=54.79 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHH---HHHhh--hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFN--IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~---~~~f~--~~~~i~GvIlnKvD~~~ 336 (481)
.+++.|+||+|.......+... .. ...+.+++|+|.....+. ... +.... ..+ ..-+|.||.|...
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 123 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQH---YY--RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEV-PRILVGNKCDLRE 123 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHH---hh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCC-CEEEEEECccchh
Confidence 4678999999863211111111 11 234778999998654322 121 12221 122 3458899999642
Q ss_pred c----hhHHHHHHHHhCCCe
Q 011624 337 R----GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV 352 (481)
. .......+...+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04115 124 QIQVPTDLAQRFADAHSMPL 143 (170)
T ss_pred hcCCCHHHHHHHHHHcCCcE
Confidence 2 233344555556665
No 440
>PRK04213 GTP-binding protein; Provisional
Probab=96.83 E-value=0.02 Score=53.80 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
..|++.|.+||||||+...|.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~ 30 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT 30 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999998874
No 441
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.83 E-value=0.0059 Score=54.94 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHh-hh---cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-NI---EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f-~~---~~~i~GvIlnKvD~~~ 336 (481)
.+..+.++||||...... ... ... ..++.+++|+|+...... ......+ .. .-.+.-+|+||+|...
T Consensus 41 ~~~~~~i~Dt~G~~~~~~-~~~---~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRP-YWR---CYY--SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCEEEEEEECCCCHHHHH-HHH---HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 356789999999743211 111 111 235788999998654221 1222111 11 1134568999999643
No 442
>PRK06851 hypothetical protein; Provisional
Probab=96.83 E-value=0.023 Score=59.04 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
.+++++.|++|+||||++.+++..+.++|++|.+.-| ++-|+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC-~~dPds 256 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC-GFDPDS 256 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC-CCCCCC
Confidence 5789999999999999999999999999999996655 344443
No 443
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.81 E-value=0.00056 Score=62.34 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCcccc---HHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCC
Q 011624 265 NVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 332 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d---~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKv 332 (481)
..+++||||||....+ ...+.+. . ...+.+++|+++... .+.....+.........-+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~---~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEY---L--PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHH---H--STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHh---h--ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3568999999986432 2333332 2 234788999998442 233333333344444577888884
No 444
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.0058 Score=56.72 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=47.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc-CCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D-~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
+++++|.+|+|||+++.+++.. .|.++.+++.- ++-....+....|...-+....... .+.+ +.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E---~~~~-l~~~l~~~-- 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIE---TPRD-LVSALKEL-- 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEee---cHHH-HHHHHHhc--
Confidence 3678999999999999999765 56777777554 3322222233334333332222211 1222 23334332
Q ss_pred CCCcEEEEcCCCC
Q 011624 264 KNVDVVIVDTAGR 276 (481)
Q Consensus 264 ~~~D~VIIDt~G~ 276 (481)
...++|+|||-+.
T Consensus 72 ~~~~~VLIDclt~ 84 (169)
T cd00544 72 DPGDVVLIDCLTL 84 (169)
T ss_pred CCCCEEEEEcHhH
Confidence 2578999999654
No 445
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.81 E-value=0.0092 Score=53.56 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-++++|++|+||||++..|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37788999999999998875
No 446
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=96.80 E-value=0.015 Score=59.72 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
=|+++|.++|||||+...|.
T Consensus 159 dV~lvG~pnaGKSTLl~~lt 178 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVS 178 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHh
Confidence 47788999999999998885
No 447
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.80 E-value=0.0085 Score=55.73 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH------HHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~------~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+++.+.||||.... .... .... ...+.+++|.|.....+.... +..+.....+.-+|.||.|....
T Consensus 48 ~~~~~i~Dt~g~~~~-~~~~---~~~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERF-RSLN---NSYY--RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHH-HhhH---HHHc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 456789999995321 1111 1111 235788999998655432221 22222222345678999996422
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 122 ~v~~~~~~~~~~~~~~~~ 139 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPF 139 (188)
T ss_pred cCCHHHHHHHHHHcCCeE
Confidence 122233444456655
No 448
>PLN02348 phosphoribulokinase
Probab=96.79 E-value=0.0021 Score=66.91 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHc---------------CCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~---------------G~kVlLId~D~~ 222 (481)
++|.+|.|+|.+||||||++..|+..|... +..+.+|..|-|
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 467899999999999999999999999754 247889999976
No 449
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.79 E-value=0.0041 Score=68.43 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=64.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..|+++|++|+||||++..|. |.++..+ +.+++..... ..... ..
T Consensus 119 lrIvLVGKTGVGKSSLINSIL------Gekvf~v--ss~~~~TTr~---------~ei~~------------------~i 163 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIF------GEVKFST--DAFGMGTTSV---------QEIEG------------------LV 163 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHh------ccccccc--cCCCCCceEE---------EEEEE------------------EE
Confidence 468899999999999999886 4444422 2233321100 00000 01
Q ss_pred CCCcEEEEcCCCCcccc------HHHHHHHHhhhhccCCceEEEEEeCc-ch---H--HHHHHH-HHhhhcC-CeeEEEE
Q 011624 264 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAM-TG---Q--EAAALV-TTFNIEI-GITGAIL 329 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d------~~~~~el~~i~~~~~p~~vvLVvda~-~~---~--~~~~~~-~~f~~~~-~i~GvIl 329 (481)
.+..+.||||||..... .....++...+....++.+++|.... .. . .++..+ ..|.+.+ .-.-|++
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 34569999999987542 12333344444434567677776532 11 1 223333 3344332 4466889
Q ss_pred cCCCCCC
Q 011624 330 TKLDGDS 336 (481)
Q Consensus 330 nKvD~~~ 336 (481)
|+-|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9998653
No 450
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.79 E-value=0.0064 Score=68.85 Aligned_cols=109 Identities=28% Similarity=0.378 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCC--CHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV--KPSQIAKQGLE 259 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G--~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~--~~~~~l~~~l~ 259 (481)
++++++|.+|+||||++..+...+...| .+|.+ .+-+-+++. ...+..|.+.......+ .+........+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l-~ApTg~AA~-----~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~ 412 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGL-AAPTGRAAK-----RLGEVTGLTASTIHRLLGYGPDTFRHNHLE 412 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEE-EeCchHHHH-----HHHHhcCCccccHHHHhhccCCccchhhhh
Confidence 4899999999999999999999888877 66664 444444331 22333444332211100 00000000000
Q ss_pred HHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccC-CceEEEEEeC
Q 011624 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDA 305 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~-p~~vvLVvda 305 (481)
....+|++|||=+++++ ..++..+. ..+. ...++||-|.
T Consensus 413 --~~~~~~llIvDEaSMvd--~~~~~~Ll---~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 413 --DPIDCDLLIVDESSMMD--TWLALSLL---AALPDHARLLLVGDT 452 (720)
T ss_pred --ccccCCEEEEeccccCC--HHHHHHHH---HhCCCCCEEEEECcc
Confidence 01368999999999874 44555543 3333 2456777775
No 451
>PRK04040 adenylate kinase; Provisional
Probab=96.79 E-value=0.0016 Score=61.46 Aligned_cols=32 Identities=38% Similarity=0.516 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
|.+|+++|.+|+||||++..|+..|. .+.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEE
Confidence 57899999999999999999998774 245543
No 452
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.77 E-value=0.01 Score=55.18 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-++++|.+|+||||+...|.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 357888999999999999886
No 453
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.77 E-value=0.028 Score=63.91 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch-hHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-AAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp-~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
..++|+||+|||||+++..||..+ +.++.-+|+..|.. .....+ .|-+.-.. ..+....+.+.+ +
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~l------ig~~~gyv--g~~~~~~l~~~~---~ 550 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRL------IGAPPGYV--GFEQGGLLTEAV---R 550 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHH------hcCCCCCc--ccchhhHHHHHH---H
Confidence 468899999999999999999887 56677677655531 111111 12211001 112222333333 3
Q ss_pred cCCCcEEEEcCCCCcc
Q 011624 263 KKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~ 278 (481)
...+.++++|-....+
T Consensus 551 ~~p~~VvllDEieka~ 566 (731)
T TIGR02639 551 KHPHCVLLLDEIEKAH 566 (731)
T ss_pred hCCCeEEEEechhhcC
Confidence 3678999999976654
No 454
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.76 E-value=0.006 Score=69.33 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=59.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
.+|.+|++.|..++||||++..|- +.+|. +.. + ++ .....+ .+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~e-~-~G-------IT~~ig--a~~v---------------- 332 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AGE-A-GG-------ITQHIG--AYQV---------------- 332 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--ccc-c-Cc-------eeeecc--EEEE----------------
Confidence 466789999999999999997773 22221 100 0 00 000011 1100
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHh-hhcCCeeEEEEcCCCCC
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 335 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~ 335 (481)
...++.+.|+||||.... ....... ....|.++||+|+..+ ......+... ...++ .-|++||+|..
T Consensus 333 -~~~~~~ItfiDTPGhe~F----~~m~~rg--a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~ 402 (787)
T PRK05306 333 -ETNGGKITFLDTPGHEAF----TAMRARG--AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKP 402 (787)
T ss_pred -EECCEEEEEEECCCCccc----hhHHHhh--hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECcccc
Confidence 123567899999997532 1111111 2234788999998543 1222222211 12234 45889999974
No 455
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.75 E-value=0.012 Score=53.38 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHH---HhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVT---TFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~---~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|.||||.... .... .... -..+.+++|.|.+...+.. ..+. .....-.+.-+|.||.|....
T Consensus 50 ~~~l~i~Dt~G~~~~-~~~~---~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 50 KIKLQIWDTAGQERF-RAVT---RSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEEECCCcHHH-HHHH---HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 467889999986321 1111 1111 2357889999986543322 2121 121111235578999996432
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (166)
T cd04122 124 DVTYEEAKQFADENGLLF 141 (166)
T ss_pred CcCHHHHHHHHHHcCCEE
Confidence 233444555556655
No 456
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0041 Score=62.18 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+...|+++|++|||||||.+++..++-+.-.+..+-==||
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP 163 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP 163 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc
Confidence 3458999999999999999999999876544333333343
No 457
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.74 E-value=0.0052 Score=65.30 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANY 206 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~ 206 (481)
...++++|+.++||||++..|...
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~ 30 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYK 30 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHH
Confidence 345788999999999999988753
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.73 E-value=0.022 Score=58.77 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLV 217 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLI 217 (481)
..+++++|++|+||||+...|..++.+. +.+|..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 3589999999999999999998877643 4555533
No 459
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.73 E-value=0.008 Score=53.93 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHHh---hhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~f---~~~~~i~GvIlnKvD~~~~- 337 (481)
..++.|+||||... ....... .. ...+.+++|.|.....+... ....+ ...++ .-+|.||+|...+
T Consensus 50 ~~~~~i~D~~G~~~-~~~~~~~---~~--~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEE-FDAITKA---YY--RGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHH-HHHhHHH---Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 46789999999632 1111111 11 23477888888855432221 11112 22333 3488999996432
Q ss_pred ---hhHHHHHHHHhCCCeEEe
Q 011624 338 ---GGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~~i 355 (481)
...+..+....+.|+..+
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~ 143 (162)
T cd04106 123 VITNEEAEALAKRLQLPLFRT 143 (162)
T ss_pred CCCHHHHHHHHHHcCCeEEEE
Confidence 223445566677776433
No 460
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.73 E-value=0.014 Score=52.42 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH------HHHhhhcCC-eeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIG-ITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~------~~~f~~~~~-i~GvIlnKvD~~~~ 337 (481)
.+++.++||||... ....... ..+ ..+.+++|+|.....+.... +..+....+ ..-+|.||.|....
T Consensus 48 ~~~~~l~D~~g~~~-~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQER-FRTLTSS---YYR--GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchh-hhhhhHH---HhC--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 46789999999532 1111111 111 35788999998654332221 222221111 24578899996522
Q ss_pred ---hhHHHHHHHHhCCCeEE
Q 011624 338 ---GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~~ 354 (481)
...........+.|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ 141 (161)
T cd01863 122 EVTREEGLKFARKHNMLFIE 141 (161)
T ss_pred ccCHHHHHHHHHHcCCEEEE
Confidence 23344555556666643
No 461
>PRK06547 hypothetical protein; Provisional
Probab=96.73 E-value=0.0017 Score=60.47 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.++.+|++.|++||||||++..|+..+ .+.+++.|.|-
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeeccccee
Confidence 357899999999999999999998763 35566777653
No 462
>PRK01184 hypothetical protein; Provisional
Probab=96.72 E-value=0.02 Score=53.18 Aligned_cols=34 Identities=35% Similarity=0.622 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ccCCc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYR 223 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId-~D~~r 223 (481)
.+|+++|++|+||||++ .+ +.+.|..+. + .|..|
T Consensus 2 ~~i~l~G~~GsGKsT~a-~~---~~~~g~~~i--~~~d~lr 36 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFS-KI---AREMGIPVV--VMGDVIR 36 (184)
T ss_pred cEEEEECCCCCCHHHHH-HH---HHHcCCcEE--EhhHHHH
Confidence 48899999999999975 34 345576653 4 35444
No 463
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.71 E-value=0.0064 Score=55.34 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH-------HHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-------LVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~-------~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.++++.|+||||.......... .. ...+.+++|+|.....+... .++...... ..-+|.||+|...
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~----~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAA----EI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhh----hc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence 4578999999987532211111 11 23477889999865543322 122222223 3457889999643
No 464
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.027 Score=53.60 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=39.8
Q ss_pred cccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc-hh
Q 011624 177 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-PA 225 (481)
Q Consensus 177 ~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r-p~ 225 (481)
.+......|..+-|++|+||||+..-||..|.-..-+|.+-.+|+.| |.
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH
Confidence 34445678999999999999999999998887555578888888877 44
No 465
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.71 E-value=0.013 Score=64.05 Aligned_cols=122 Identities=25% Similarity=0.330 Sum_probs=74.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCC--eEEEEeccCCchhHHHHHHHhhhhcCCCeec--------CC-----C-
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--------AG-----T- 246 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~--kVlLId~D~~rp~aidql~~~~~~~gv~v~~--------~~-----~- 246 (481)
..||+++|-+|+||||-. +.+|-..|+ +=.+.+.-|.|.+++.-.+..++.+|+++-. .+ +
T Consensus 371 n~vvvivgETGSGKTTQl---~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQL---AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred CcEEEEEecCCCCchhhh---HHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 469999999999999964 566666553 4466777788888887777777766543210 00 0
Q ss_pred --CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHH-HHHHHHhhhhccCCceEEEEEeCcch
Q 011624 247 --EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKA-MMDELKDVKRVLNPTEVLLVVDAMTG 308 (481)
Q Consensus 247 --~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~-~~~el~~i~~~~~p~~vvLVvda~~~ 308 (481)
++...-++++.+.......|.+||+|-+---..+.. ++.-+..++.- ..+--++|..|++.
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMD 511 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeecccc
Confidence 122223456666554446799999999843222333 33333333332 23556788888543
No 466
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.71 E-value=0.1 Score=53.85 Aligned_cols=106 Identities=23% Similarity=0.330 Sum_probs=57.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc----C--CeEEEEeccCCchhHHHHHHHhhhhc---CCCeecCCCCCCHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----G--KSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGTEVKPSQ 252 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~----G--~kVlLId~D~~rp~aidql~~~~~~~---gv~v~~~~~~~~~~~ 252 (481)
.+..++++|++|+|||+++..++..+.+. | ..+..++|...+... +.+....... +..+-. ......+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~~~~~--~~~~~~~ 115 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY-QVLVELANQLRGSGEEVPT--TGLSTSE 115 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH-HHHHHHHHHHhhcCCCCCC--CCCCHHH
Confidence 35578999999999999999999888642 2 467777776554211 1111112222 332211 1122233
Q ss_pred HHHHHHHHHHc-CCCcEEEEcCCCCccc-cHHHHHHHHhh
Q 011624 253 IAKQGLEEAKK-KNVDVVIVDTAGRLQI-DKAMMDELKDV 290 (481)
Q Consensus 253 ~l~~~l~~~~~-~~~D~VIIDt~G~~~~-d~~~~~el~~i 290 (481)
........+.. ...-++|||-...+.. +...+.++..+
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~ 155 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRA 155 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcc
Confidence 33333343321 3345788998876632 23445555444
No 467
>PHA00729 NTP-binding motif containing protein
Probab=96.70 E-value=0.0023 Score=61.97 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
.-|+++|++|+||||+|.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688899999999999999998764
No 468
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.69 E-value=0.0046 Score=69.71 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.++.+|++.|..|+||||++-.|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~ 265 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIR 265 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999997774
No 469
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.69 E-value=0.0077 Score=62.35 Aligned_cols=37 Identities=38% Similarity=0.662 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYL--KKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L--~~~G~kVlLId~D 220 (481)
.+++|.|.+|+|||.++..|+..+ ...+.++.++...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 588999999999999999999999 6677777766554
No 470
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.033 Score=64.15 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..++++||+|+|||+++..||..|-..+..+.-+|+.-|
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 457789999999999999999988655556665665444
No 471
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.68 E-value=0.0089 Score=54.83 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh----cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI----EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~----~~~i~GvIlnKvD~~ 335 (481)
.++.+.|.||||.... ..+... . ....+.+++|+|++...+.. ..+..+.. .-.+.-+|.||+|..
T Consensus 51 ~~~~~~l~Dt~G~~~~-~~~~~~---~--~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 KNVKFNVWDVGGQDKI-RPLWRH---Y--YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred CCEEEEEEECCCCHHH-HHHHHH---H--hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 3567899999997421 111111 1 12357889999986543222 22222211 112355889999964
No 472
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.68 E-value=0.11 Score=50.69 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=92.2
Q ss_pred EEEEE-cC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc---hhHHHHHHHhhh------------------------
Q 011624 185 VILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGE------------------------ 235 (481)
Q Consensus 185 VI~i~-G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r---p~aidql~~~~~------------------------ 235 (481)
.|.++ |. +|.||-.+++.|+..|+.+|++|..+-.|||= |+...+. .|++
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~-~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPY-QHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCc-cceeEEEccCCCcccccccchhhhcCCC
Confidence 35555 44 99999999999999999999999999999983 3321111 1111
Q ss_pred ------------------------hcCCCeecCCCCCCHHHHHHHHHHHHH-cCCCcEEEEcCCCCccc--cHHHHHHHH
Q 011624 236 ------------------------QVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQI--DKAMMDELK 288 (481)
Q Consensus 236 ------------------------~~gv~v~~~~~~~~~~~~l~~~l~~~~-~~~~D~VIIDt~G~~~~--d~~~~~el~ 288 (481)
.+|-.+-... .-.+.+++.+..+. ..++|++|++-.|.... ..-.++.+.
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviP---Hit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAir 157 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIP---HITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIR 157 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECc---CccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHH
Confidence 1111110000 00112334444432 35899999988776543 234566666
Q ss_pred hhhhccCCceEEEE-------EeCc------chHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCe
Q 011624 289 DVKRVLNPTEVLLV-------VDAM------TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (481)
Q Consensus 289 ~i~~~~~p~~vvLV-------vda~------~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV 352 (481)
++........++++ +.+. ..|-.++.++.+ .+.+.++|+|--+ .........+..-+++|+
T Consensus 158 q~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~--GIqPDgIVcRse~-pL~e~~keKIAlFcnVpv 231 (255)
T cd03113 158 QMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSI--GIQPDILVCRSEK-PLPPEIREKIALFCDVPP 231 (255)
T ss_pred HHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhC--CCCCCEEEEeCCC-CCchHHHHHHHHhcCCCH
Confidence 66665544443322 1221 114445555544 4778999999832 222333345666788887
No 473
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.68 E-value=0.0067 Score=57.54 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|++.|.+||||||++..+.
T Consensus 3 I~ivG~~~vGKTsLi~~~~ 21 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFL 21 (198)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6788999999999998775
No 474
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.67 E-value=0.0062 Score=55.13 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-++++|.+||||||+...+.
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999998875
No 475
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.66 E-value=0.017 Score=63.92 Aligned_cols=111 Identities=24% Similarity=0.253 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
+|+++|..++||||++.+|. |.. .|.+... ...|+.+-..... +...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~eE---------~~rGiTid~~~~~-------------~~~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLPEE---------KKRGMTIDLGFAY-------------FPLP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCChhH---------hcCCceEEeEEEE-------------EEeC
Confidence 67889999999999998885 322 2332110 0112211100000 0113
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHH--HHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEA--AALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~--~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
++.+.|+||||.-. +...+ +......+.+++|+|+..+ +.. ...+..+ .++-.-|++||+|...
T Consensus 49 ~~~v~~iDtPGhe~----f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 49 DYRLGFIDVPGHEK----FISNA--IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVN 117 (581)
T ss_pred CEEEEEEECCCHHH----HHHHH--HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCC
Confidence 46789999999532 22222 1222345889999999643 221 2222222 2332457899999754
No 476
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.66 E-value=0.009 Score=63.98 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
-+++.|++|+|||+++.+++.++.+ .|.+|.++.++-|-....+.+.. + .+.+.+....+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~-----~------------~~~~~~~~~~~- 204 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQK-----T------------HKEIEQFKNEI- 204 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHH-----h------------hhHHHHHHHHh-
Confidence 3788999999999999999998864 47999988887654333332211 0 01122233333
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhcc
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 294 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~ 294 (481)
..+|++|||-.+..........++-.+.+..
T Consensus 205 -~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~ 235 (450)
T PRK14087 205 -CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF 235 (450)
T ss_pred -ccCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence 5789999999987765445555555555543
No 477
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.66 E-value=0.011 Score=52.55 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=42.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---H---HHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---A---LVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~---~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
...+.++||||... ...+... .. ...+.+++|+|........ . .+..+...-...-+++||.|....
T Consensus 48 ~~~~~~~D~~g~~~-~~~~~~~---~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 48 RIDLAIWDTAGQER-YHALGPI---YY--RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEEEECCchHH-HHHhhHH---Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 34688999999632 1111111 11 2347889999986553321 1 112222221235578999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+.......+.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 122 VVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred CCCHHHHHHHHHHcCCEEE
Confidence 2233444555666663
No 478
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.66 E-value=0.011 Score=64.40 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK 209 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~ 209 (481)
++..++++|++|+||||++.-|+..+.-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4568999999999999999888765543
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.026 Score=52.77 Aligned_cols=106 Identities=19% Similarity=0.271 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc-CC---chhHHHHHHHhhhhcCCCeecCC---CCCCH
Q 011624 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD-VY---RPAAIDQLVILGEQVGVPVYTAG---TEVKP 250 (481)
Q Consensus 178 ~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D-~~---rp~aidql~~~~~~~gv~v~~~~---~~~~~ 250 (481)
+.-.++.++++.|++|+||||+...+. ...|. |.+..-+ .+ +..+..|. .+.+..++.-...+ ..+..
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~-v~~~~~~~~~~~~~~~~~~q~-~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGK-ARLISFLPKFSRNKLIFIDQL-QFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCc-EEECCcccccccccEEEEhHH-HHHHHcCCCccccCCCcCcCCH
Confidence 344466799999999999999997663 23443 3322111 11 11223332 22233343211111 12233
Q ss_pred HHHHHHHHHHHHcCC--CcEEEEcCCCCccccHHHHHHHHh
Q 011624 251 SQIAKQGLEEAKKKN--VDVVIVDTAGRLQIDKAMMDELKD 289 (481)
Q Consensus 251 ~~~l~~~l~~~~~~~--~D~VIIDt~G~~~~d~~~~~el~~ 289 (481)
.+.-+-++..+...+ .+++|+|-|-.. .|......+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~-LD~~~~~~l~~ 130 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTG-LHQQDINQLLE 130 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCccc-CCHHHHHHHHH
Confidence 333333444444456 899999998553 34444444333
No 480
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.66 E-value=0.072 Score=56.38 Aligned_cols=140 Identities=22% Similarity=0.262 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCC
Q 011624 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 239 (481)
Q Consensus 160 ~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv 239 (481)
.+.+++.+++......-.. ..+.-++++|+|.||||++...|+ |...++|+-= |+.. .
T Consensus 196 ~~~~~l~~ll~~~~~g~il--r~G~kvvIiG~PNvGKSSLLNaL~------~~d~AIVTdI---~GTT-----------R 253 (454)
T COG0486 196 ELIAELDELLATAKQGKIL--REGLKVVIIGRPNVGKSSLLNALL------GRDRAIVTDI---AGTT-----------R 253 (454)
T ss_pred HHHHHHHHHHHhhhhhhhh--hcCceEEEECCCCCcHHHHHHHHh------cCCceEecCC---CCCc-----------c
Confidence 3455666665432211000 234578889999999999998887 5555544321 1210 1
Q ss_pred CeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHH--HHhh-hhccCCceEEEEEeCcch--HHHHHH
Q 011624 240 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE--LKDV-KRVLNPTEVLLVVDAMTG--QEAAAL 314 (481)
Q Consensus 240 ~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~e--l~~i-~~~~~p~~vvLVvda~~~--~~~~~~ 314 (481)
+++... +.-+++.+-|+||+|.=..+. ..+. +.+. ...-..+-+++|+|++.. ..-...
T Consensus 254 Dviee~---------------i~i~G~pv~l~DTAGiRet~d-~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~ 317 (454)
T COG0486 254 DVIEED---------------INLNGIPVRLVDTAGIRETDD-VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL 317 (454)
T ss_pred ceEEEE---------------EEECCEEEEEEecCCcccCcc-HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH
Confidence 121110 012678899999999754421 1111 1111 111235889999999653 222222
Q ss_pred HHHhhhcCCeeEEEEcCCCCCCch
Q 011624 315 VTTFNIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 315 ~~~f~~~~~i~GvIlnKvD~~~~~ 338 (481)
.. ..+.-...-+|+||.|.....
T Consensus 318 ~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 318 IE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred HH-hcccCCCEEEEEechhccccc
Confidence 22 222223345899999976543
No 481
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.65 E-value=0.0031 Score=57.05 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHH-------HhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT-------TFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~-------~f~~~~~i~GvIlnKvD~~ 335 (481)
..+.+.++||||..... .+... .....+.+++|+|.....+...... .+... ...-+|.||.|..
T Consensus 46 ~~~~l~~~D~~g~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~ 117 (171)
T cd00157 46 KQVNLGLWDTAGQEEYD-----RLRPL-SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPN-VPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEEEeCCCccccc-----ccchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC-CCEEEEEccHHhh
Confidence 35678999999965321 11111 1123477899999865443332221 12222 2345889999954
No 482
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.65 E-value=0.017 Score=53.85 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHh-hh---cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF-NI---EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f-~~---~~~i~GvIlnKvD~~~ 336 (481)
++..+.|.|+||.... ..+... . ....+.+++|+|++...+.. ..+..+ .. .-.+.-++.||+|...
T Consensus 59 ~~~~~~i~D~~Gq~~~-~~~~~~---~--~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 KNISFTVWDVGGQDKI-RPLWRH---Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CCEEEEEEECCCCHHH-HHHHHH---H--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 4567899999996321 111111 1 12357889999996543322 222222 11 1123568899999643
Q ss_pred chhHHHHHHHHhCC
Q 011624 337 RGGAALSVKEVSGK 350 (481)
Q Consensus 337 ~~g~~~~~~~~~gl 350 (481)
.. ....+.+..++
T Consensus 133 ~~-~~~~~~~~l~l 145 (181)
T PLN00223 133 AM-NAAEITDKLGL 145 (181)
T ss_pred CC-CHHHHHHHhCc
Confidence 32 22334444444
No 483
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.63 E-value=0.025 Score=53.48 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-----CCHH---HHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-----VKPS---QIAK 255 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-----~~~~---~~l~ 255 (481)
..+.+.+.+|-||||.+..+|.....+|++|.++--=--...+-+ ........++.+...+.. .++. ..++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE-~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGE-RNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCH-HHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 467777889999999999999999999999998753221111111 112222224444433321 1111 1222
Q ss_pred HHH----HHHHcCCCcEEEEcCCCCc-cccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 256 QGL----EEAKKKNVDVVIVDTAGRL-QIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 256 ~~l----~~~~~~~~D~VIIDt~G~~-~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+++ +.+..+.||++|+|--... ..+--..+++.+++.. .|..+-+|+-.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlTG 155 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVITG 155 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEEC
Confidence 333 3334578999999985322 1111123344444443 34444555444
No 484
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.63 E-value=0.011 Score=65.41 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+|.++++.|..++||||+...|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~ 108 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR 108 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 55688999999999999998773
No 485
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.62 E-value=0.037 Score=55.88 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=84.9
Q ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 183 ~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
..+++++|. .-+||=||+..|...+.++|.++.++.+... -.+-...|+++-...... -...+..++.++
T Consensus 112 ~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT--------Gimia~~Gv~iDav~~DF-vaGavE~~v~~~ 182 (301)
T PF07755_consen 112 AKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT--------GIMIAGYGVPIDAVPSDF-VAGAVEALVPEA 182 (301)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH--------HHHCHSEC--GGGSBGGG-HHHHHHHHHHHH
T ss_pred CCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc--------eEEEecCCeeccchhhhh-HHHHHHHHHHhh
Confidence 456666666 8899999999999999999999998877632 222234455442221111 122233444444
Q ss_pred HcCCCcEEEEcCCCCcccc--HHHHHHHHhhhhccCCceEEEEEeCcc-------------hHHHHHHHHHhhh---cCC
Q 011624 262 KKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMT-------------GQEAAALVTTFNI---EIG 323 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d--~~~~~el~~i~~~~~p~~vvLVvda~~-------------~~~~~~~~~~f~~---~~~ 323 (481)
. ++.|++||++-|.+... ....-. ++.-.+|+.++|.-++.. -++.++....+.. ..+
T Consensus 183 ~-~~~d~ivVEGQgsL~hPay~gvsl~---lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~ 258 (301)
T PF07755_consen 183 A-EEHDWIVVEGQGSLSHPAYSGVSLG---LLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAGTKPPAK 258 (301)
T ss_dssp C-CC-SEEEEE--S-TTSTTTHHCHHH---HHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCCGC---E
T ss_pred C-cCCCEEEEeccccccCccccccchh---hhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhccCCCcc
Confidence 2 25599999998766432 232223 455567899999988721 1344455555532 234
Q ss_pred eeEEEEcCCCCCCc--hhHHHHHHHHhCCCe
Q 011624 324 ITGAILTKLDGDSR--GGAALSVKEVSGKPI 352 (481)
Q Consensus 324 i~GvIlnKvD~~~~--~g~~~~~~~~~glPV 352 (481)
+.||-+|--+.+.. ...+..+.+++|+|+
T Consensus 259 VvgIslNt~~l~~~e~~~~~~~~~~e~glPv 289 (301)
T PF07755_consen 259 VVGISLNTSGLSEEEAKAAIERIEEELGLPV 289 (301)
T ss_dssp EEEEECC-TTS-HHHHHHHHHHHHHHH-S-E
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCe
Confidence 88898988765432 233466778899999
No 486
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.61 E-value=0.023 Score=50.59 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|++.|.+||||||++..+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6778999999999998775
No 487
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.60 E-value=0.01 Score=56.84 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH------HHHHhhhc--CC-eeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA------LVTTFNIE--IG-ITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~------~~~~f~~~--~~-i~GvIlnKvD~~ 335 (481)
.+.+.|.||+|.-. ...+... . ....+.+++|.|.+...+... .+...... .+ +.-+|.||.|..
T Consensus 49 ~~~~~i~Dt~G~~~-~~~l~~~---~--~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSI-GGKMLDK---Y--IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHH-HHHHHHH---H--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 45688999998631 1112111 1 224588899999865433222 12222111 11 345789999964
Q ss_pred Cc----hhHHHHHHHHhCCCeEEe
Q 011624 336 SR----GGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 336 ~~----~g~~~~~~~~~glPV~~i 355 (481)
.. ......++...+.+...+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~i 146 (215)
T cd04109 123 HNRTVKDDKHARFAQANGMESCLV 146 (215)
T ss_pred cccccCHHHHHHHHHHcCCEEEEE
Confidence 21 123345555666665433
No 488
>PRK06761 hypothetical protein; Provisional
Probab=96.59 E-value=0.0024 Score=63.99 Aligned_cols=42 Identities=31% Similarity=0.618 Sum_probs=35.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE-EeccCCch
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRP 224 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlL-Id~D~~rp 224 (481)
+++|+++|++|+||||++..|+..|..+|.+|.. .+.|.++|
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p 45 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHP 45 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCc
Confidence 3589999999999999999999999888988875 56666555
No 489
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.59 E-value=0.013 Score=53.16 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHHHHHHh-hh---cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~~~~~f-~~---~~~i~GvIlnKvD~~ 335 (481)
.+..+.+.||||..... ... ... ....+.+++|+|++...+ +....... .. .-.+.-++.||.|..
T Consensus 42 ~~~~~~l~D~~G~~~~~-~~~---~~~--~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 42 KNISFTVWDVGGQDKIR-PLW---RHY--FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEECCCCHhHH-HHH---HHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 35668999999963211 111 111 123588899999965422 22222211 11 112345889999964
No 490
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.58 E-value=0.015 Score=53.56 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHHHHHHh-hh---cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~~~~~f-~~---~~~i~GvIlnKvD~~ 335 (481)
++..+.|.||||.... ..+... .. ...+.+++|+|.+...+ +.+....+ .. .-.+.-+|.||.|..
T Consensus 55 ~~~~l~l~D~~G~~~~-~~~~~~---~~--~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKI-RPLWRH---YY--TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhh-HHHHHH---Hh--CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 4567899999997431 111111 11 23578899999865432 22222222 11 112456899999964
No 491
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.58 E-value=0.018 Score=57.20 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~-kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
..++++++|.+|+||||+|..++.....+ .+ .|..+++...-.. .+-+.......+..........+..+......+
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccchh
Confidence 56899999999999999999998764432 23 4555555532211 122223334444442221223344444333333
Q ss_pred HHHcCCCcEEEEcCC
Q 011624 260 EAKKKNVDVVIVDTA 274 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~ 274 (481)
.+ .+..=++|+|..
T Consensus 97 ~L-~~~~~LlVlDdv 110 (287)
T PF00931_consen 97 LL-KDKRCLLVLDDV 110 (287)
T ss_dssp HH-CCTSEEEEEEEE
T ss_pred hh-ccccceeeeeee
Confidence 33 234446777764
No 492
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.15 Score=56.70 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCe-EEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-CCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~k-VlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-~~~~~~l~~~l~ 259 (481)
-+..++|+|+.|+||||++..||..|--.+.. -.-++.++.. ............-.+++..+.. ....+.+++.++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG--~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie 114 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG--QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLD 114 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc--ccHHHHHHHcCCCCcceEecccccCCHHHHHHHHH
Confidence 36788999999999999999999888632110 0001111110 0000001111111222222211 122344455554
Q ss_pred HHH----cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc
Q 011624 260 EAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 260 ~~~----~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~ 306 (481)
.+. .++|.++|||-+-++.. .....|.+.+... |..++|++-++
T Consensus 115 ~~~~~P~~gr~KViIIDEah~Ls~--~AaNALLKTLEEP-P~~v~FILaTt 162 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHMLTN--HAFNAMLKTLEEP-PEHVKFILATT 162 (700)
T ss_pred HHHhchhcCCceEEEEEChHhcCH--HHHHHHHHhhccC-CCCceEEEEeC
Confidence 432 35688999999988753 3344454444432 23445554443
No 493
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.58 E-value=0.0022 Score=58.63 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
++..|+++|++|+||||++..||..| | +.++|.|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEEChH
Confidence 45689999999999999999999877 3 34567774
No 494
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.095 Score=58.28 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=57.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-CCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGLEE 260 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-~~~~~~l~~~l~~ 260 (481)
+..++|+|+.|+||||++..||..+-- .+. +..+.... ...+........+++..+.. ....+.+++.+..
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~-----~~~pCg~C--~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~ 109 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGV-----TSTPCEVC--ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDN 109 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCC-----CCCCCccC--HHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 578999999999999999999988752 221 11111100 00111111222233322221 1223344454443
Q ss_pred HH----cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEE
Q 011624 261 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (481)
Q Consensus 261 ~~----~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVv 303 (481)
+. .+++.++|||-+-++.. .....+.+.+... |..+.+++
T Consensus 110 ~~y~P~~gk~KV~IIDEVh~LS~--~A~NALLKtLEEP-P~~v~FIL 153 (702)
T PRK14960 110 VPYAPTQGRFKVYLIDEVHMLST--HSFNALLKTLEEP-PEHVKFLF 153 (702)
T ss_pred HhhhhhcCCcEEEEEechHhcCH--HHHHHHHHHHhcC-CCCcEEEE
Confidence 31 24688999999987743 2344454454432 23344444
No 495
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.57 E-value=0.012 Score=54.88 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHh-hh---cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-NI---EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f-~~---~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||.... ...... . ....+.+++|+|++...+. ...+..+ .. .-...-+|.||.|...
T Consensus 59 ~~~~~~l~D~~G~~~~-~~~~~~---~--~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKL-RPLWRH---Y--YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCEEEEEEECCCCHhH-HHHHHH---H--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 4567899999997321 111111 1 1235788999998654322 2222222 11 1123558889999643
No 496
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.56 E-value=0.0094 Score=61.06 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.9
Q ss_pred EEEE--EcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 185 VILL--AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 185 VI~i--~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
||.+ .+.||+|||+++..|+.+|.++|++|+++.-.
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 7777 46699999999999999999999999998744
No 497
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.068 Score=61.32 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~l~~~l~ 259 (481)
-+..++|.|+.|+||||++..||+.|. .+|.... -|...+. ...+ ..+.....+++..+. .....+.+++..+
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--pCg~C~s--C~~~-~~g~~~~~dv~eidaas~~~Vd~iR~l~~ 110 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCGECDS--CVAL-APGGPGSLDVTEIDAASHGGVDDARELRE 110 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--CCcccHH--HHHH-HcCCCCCCcEEEecccccCCHHHHHHHHH
Confidence 356889999999999999999998875 2232110 1111111 0011 001011222322221 1112334444333
Q ss_pred HH----HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 260 EA----KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 260 ~~----~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.+ ....|.++|||-+-++.. .....|.+++... |..++|++-+
T Consensus 111 ~~~~~p~~~~~KV~IIDEad~lt~--~a~NaLLK~LEEp-P~~~~fIl~t 157 (824)
T PRK07764 111 RAFFAPAESRYKIFIIDEAHMVTP--QGFNALLKIVEEP-PEHLKFIFAT 157 (824)
T ss_pred HHHhchhcCCceEEEEechhhcCH--HHHHHHHHHHhCC-CCCeEEEEEe
Confidence 32 125788999999887753 3344555555543 3445555544
No 498
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.017 Score=57.62 Aligned_cols=132 Identities=24% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCCEE-EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 180 KSRPTV-ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 180 ~~~~~V-I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
..+|.+ |..+|.---||||++++|...|+++|.... ..-+.+|.. -..+..|+.+-....+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~------~~y~~id~a-PeEk~rGITIntahve----------- 69 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEA------KAYDQIDNA-PEEKARGITINTAHVE----------- 69 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccc------cchhhhccC-chHhhcCceeccceeE-----------
Confidence 345554 445699999999999999999998873322 111112211 1222345544322111
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+...+--|.-+||||....-.+++ ..+.+-|..+||+.|..+ |.--.++-.-.-.++..-+++||+|..
T Consensus 70 --yet~~rhyahVDcPGHaDYvKNMI------tgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv 141 (394)
T COG0050 70 --YETANRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV 141 (394)
T ss_pred --EecCCceEEeccCCChHHHHHHHh------hhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc
Confidence 112345689999999754322222 223334888999988544 332222211111344566889999975
Q ss_pred Cc
Q 011624 336 SR 337 (481)
Q Consensus 336 ~~ 337 (481)
..
T Consensus 142 dd 143 (394)
T COG0050 142 DD 143 (394)
T ss_pred Cc
Confidence 54
No 499
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.56 E-value=0.018 Score=52.06 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+||||||++..|.
T Consensus 3 i~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYV 21 (172)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999998875
No 500
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.55 E-value=0.025 Score=65.31 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..++|.|++|+|||+++..||..+...+.++..+|+..|..... .....|.|--..+ ......+... ++.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~-----~~~l~g~~~g~~g--~~~~g~l~~~---v~~ 665 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS-----VARLIGAPPGYVG--YEEGGQLTEA---VRR 665 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccch-----HHHhcCCCCCccC--cccccHHHHH---HHc
Confidence 57889999999999999999999887788899888887642211 1111222210011 1111122222 233
Q ss_pred CCCcEEEEcCCCCcc
Q 011624 264 KNVDVVIVDTAGRLQ 278 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~ 278 (481)
..+.++++|-....+
T Consensus 666 ~p~~vlllDeieka~ 680 (852)
T TIGR03346 666 KPYSVVLFDEVEKAH 680 (852)
T ss_pred CCCcEEEEeccccCC
Confidence 578899999987664
Done!