Query 011624
Match_columns 481
No_of_seqs 550 out of 4052
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1.9E-69 6.5E-74 566.5 38.1 397 83-481 1-400 (443)
2 3kl4_A SRP54, signal recogniti 100.0 1.1E-65 3.7E-70 538.0 35.9 392 90-481 4-403 (433)
3 2xxa_A Signal recognition part 100.0 1.2E-62 4.3E-67 516.7 36.7 398 84-481 1-401 (433)
4 2ffh_A Protein (FFH); SRP54, s 100.0 5E-62 1.7E-66 509.5 36.2 387 84-481 1-387 (425)
5 2j37_W Signal recognition part 100.0 9E-58 3.1E-62 486.7 21.7 398 83-481 1-405 (504)
6 2v3c_C SRP54, signal recogniti 100.0 4.8E-57 1.6E-61 474.2 24.4 394 85-481 1-397 (432)
7 1j8m_F SRP54, signal recogniti 100.0 1.4E-43 4.9E-48 355.1 33.7 293 86-379 1-296 (297)
8 1ls1_A Signal recognition part 100.0 3.1E-41 1E-45 338.0 34.3 295 84-380 1-295 (295)
9 3e70_C DPA, signal recognition 100.0 2.8E-41 9.6E-46 342.7 30.0 299 80-379 3-325 (328)
10 1zu4_A FTSY; GTPase, signal re 100.0 7.3E-40 2.5E-44 331.4 30.8 286 86-382 12-313 (320)
11 1vma_A Cell division protein F 100.0 1.3E-39 4.4E-44 327.5 32.1 279 82-378 13-305 (306)
12 2yhs_A FTSY, cell division pro 100.0 3.4E-37 1.2E-41 325.2 33.8 293 80-380 191-496 (503)
13 2og2_A Putative signal recogni 100.0 2.2E-36 7.4E-41 309.9 33.6 291 81-378 53-359 (359)
14 1rj9_A FTSY, signal recognitio 100.0 2.7E-37 9.1E-42 310.5 25.2 284 83-378 2-303 (304)
15 3b9q_A Chloroplast SRP recepto 100.0 1.5E-33 5E-38 283.1 33.1 271 101-378 23-302 (302)
16 2px0_A Flagellar biosynthesis 100.0 1.1E-32 3.7E-37 276.1 27.3 257 108-378 36-296 (296)
17 4dzz_A Plasmid partitioning pr 99.7 3.2E-15 1.1E-19 139.4 18.9 151 184-352 2-161 (206)
18 3end_A Light-independent proto 99.6 3.2E-15 1.1E-19 149.2 16.8 168 181-360 39-246 (307)
19 3la6_A Tyrosine-protein kinase 99.6 3.5E-15 1.2E-19 148.2 16.4 147 182-337 91-269 (286)
20 2ph1_A Nucleotide-binding prot 99.6 3.1E-15 1.1E-19 146.1 15.3 169 183-359 18-227 (262)
21 3bfv_A CAPA1, CAPB2, membrane 99.6 7.2E-15 2.5E-19 144.8 17.7 146 182-336 81-258 (271)
22 3ea0_A ATPase, para family; al 99.6 3.4E-15 1.2E-19 143.2 14.5 165 182-358 3-205 (245)
23 1hyq_A MIND, cell division inh 99.6 6.9E-15 2.4E-19 143.0 15.5 165 184-359 3-197 (263)
24 3cio_A ETK, tyrosine-protein k 99.6 9.8E-15 3.3E-19 145.9 16.4 147 182-337 103-281 (299)
25 1cp2_A CP2, nitrogenase iron p 99.6 2.3E-14 8E-19 139.7 17.8 170 184-360 2-210 (269)
26 3k9g_A PF-32 protein; ssgcid, 99.6 6.6E-15 2.3E-19 143.7 13.7 170 181-364 25-236 (267)
27 2oze_A ORF delta'; para, walke 99.6 9.2E-15 3.1E-19 145.0 13.6 152 190-350 44-242 (298)
28 1g3q_A MIND ATPase, cell divis 99.6 9.8E-15 3.3E-19 139.4 13.1 165 184-359 3-198 (237)
29 2afh_E Nitrogenase iron protei 99.6 1.3E-14 4.6E-19 143.4 14.2 170 184-360 3-213 (289)
30 3fwy_A Light-independent proto 99.6 3E-14 1E-18 143.3 16.3 167 182-361 47-254 (314)
31 3q9l_A Septum site-determining 99.6 3.2E-14 1.1E-18 137.6 15.2 167 184-360 3-213 (260)
32 3kjh_A CO dehydrogenase/acetyl 99.6 1.3E-14 4.3E-19 139.1 11.5 155 186-352 3-211 (254)
33 3cwq_A Para family chromosome 99.5 1.6E-13 5.5E-18 129.7 16.1 143 185-352 3-152 (209)
34 1byi_A Dethiobiotin synthase; 99.5 4.9E-13 1.7E-17 126.6 19.3 171 185-362 3-207 (224)
35 1wcv_1 SOJ, segregation protei 99.5 5E-14 1.7E-18 137.0 11.5 162 182-352 5-201 (257)
36 2xj4_A MIPZ; replication, cell 99.5 2.5E-13 8.6E-18 134.4 15.4 167 183-361 4-221 (286)
37 3ug7_A Arsenical pump-driving 99.5 4.7E-13 1.6E-17 136.5 17.0 41 182-222 25-65 (349)
38 2woo_A ATPase GET3; tail-ancho 99.4 3.2E-12 1.1E-16 129.2 18.8 41 182-222 18-58 (329)
39 3pg5_A Uncharacterized protein 99.4 6.7E-13 2.3E-17 135.9 13.1 42 184-225 2-44 (361)
40 3fgn_A Dethiobiotin synthetase 99.4 2.5E-12 8.5E-17 125.3 16.4 167 183-363 26-226 (251)
41 2jqe_A SRP54, signal recogniti 99.4 2.3E-14 7.7E-19 122.8 1.5 79 403-481 3-83 (119)
42 3zq6_A Putative arsenical pump 99.4 2.1E-12 7.3E-17 130.2 15.1 40 183-222 14-53 (324)
43 3iqw_A Tail-anchored protein t 99.4 3.4E-12 1.2E-16 129.4 15.9 42 182-223 15-56 (334)
44 3p32_A Probable GTPase RV1496/ 99.4 2E-12 6.9E-17 132.0 13.9 145 182-337 78-232 (355)
45 3ez9_A Para; DNA binding, wing 99.4 1.1E-12 3.7E-17 136.1 11.7 172 180-362 108-350 (403)
46 3of5_A Dethiobiotin synthetase 99.4 3E-12 1E-16 123.0 13.4 161 184-359 5-206 (228)
47 2woj_A ATPase GET3; tail-ancho 99.4 2.4E-12 8.2E-17 131.6 13.0 40 183-222 18-59 (354)
48 3ez2_A Plasmid partition prote 99.4 2.6E-12 8.9E-17 132.9 13.0 164 180-352 105-338 (398)
49 3fkq_A NTRC-like two-domain pr 99.4 4.4E-12 1.5E-16 130.3 13.8 145 179-332 139-322 (373)
50 1hq1_A Signal recognition part 99.3 1.2E-13 4.1E-18 115.8 0.5 73 409-481 1-74 (105)
51 1ihu_A Arsenical pump-driving 99.3 2.1E-11 7E-16 132.6 15.2 45 181-226 6-50 (589)
52 1mfq_C SRP54, signal recogniti 99.3 2E-13 6.7E-18 118.1 -0.7 75 407-481 12-93 (129)
53 3qxc_A Dethiobiotin synthetase 99.3 1.8E-11 6.2E-16 118.5 12.5 149 182-337 20-204 (242)
54 1yrb_A ATP(GTP)binding protein 99.3 4.9E-12 1.7E-16 122.5 7.7 148 181-336 12-185 (262)
55 3io3_A DEHA2D07832P; chaperone 99.3 2E-11 6.8E-16 124.4 11.7 41 182-222 17-59 (348)
56 2p67_A LAO/AO transport system 99.2 5E-11 1.7E-15 121.0 13.7 143 181-336 54-208 (341)
57 1qb2_A SRP54, human signal rec 99.2 5.6E-13 1.9E-17 112.5 -2.3 73 409-481 1-80 (109)
58 3igf_A ALL4481 protein; two-do 99.2 1.5E-10 5.1E-15 119.0 14.4 39 183-222 2-40 (374)
59 1ihu_A Arsenical pump-driving 99.1 2.5E-10 8.6E-15 124.0 10.2 42 182-223 326-367 (589)
60 2www_A Methylmalonic aciduria 98.9 5.2E-09 1.8E-13 106.6 13.0 143 182-336 73-226 (349)
61 4a0g_A Adenosylmethionine-8-am 98.9 1.2E-08 4.2E-13 115.0 14.0 93 265-363 201-299 (831)
62 2wsm_A Hydrogenase expression/ 98.8 1.5E-08 5.2E-13 95.0 11.4 135 182-335 29-167 (221)
63 2qm8_A GTPase/ATPase; G protei 98.8 6.2E-08 2.1E-12 98.1 14.0 143 181-334 53-205 (337)
64 2r8r_A Sensor protein; KDPD, P 98.7 2.1E-08 7.2E-13 95.7 7.6 43 184-226 7-49 (228)
65 2e87_A Hypothetical protein PH 98.4 9E-06 3.1E-10 82.6 17.7 137 182-356 166-316 (357)
66 3izq_1 HBS1P, elongation facto 98.4 1E-06 3.5E-11 96.1 10.8 68 83-167 36-103 (611)
67 2hf9_A Probable hydrogenase ni 98.3 2.2E-06 7.5E-11 80.4 9.4 136 182-335 37-177 (226)
68 1xjc_A MOBB protein homolog; s 98.3 1.3E-06 4.5E-11 79.7 7.4 40 183-222 4-43 (169)
69 2cvh_A DNA repair and recombin 98.2 1.2E-05 4.2E-10 74.7 13.5 48 164-221 8-55 (220)
70 2obn_A Hypothetical protein; s 98.2 1.3E-05 4.4E-10 81.1 14.3 158 183-352 152-331 (349)
71 2dr3_A UPF0273 protein PH0284; 98.2 1.1E-05 3.7E-10 76.3 12.1 51 165-222 12-62 (247)
72 3hr8_A Protein RECA; alpha and 98.2 1.7E-05 5.7E-10 80.8 13.9 100 163-277 47-151 (356)
73 1xp8_A RECA protein, recombina 98.2 1.4E-05 4.9E-10 81.6 13.1 101 163-278 60-165 (366)
74 3vqt_A RF-3, peptide chain rel 98.2 1.7E-06 5.9E-11 93.1 6.5 141 182-353 30-185 (548)
75 3iev_A GTP-binding protein ERA 98.1 6.7E-06 2.3E-10 81.9 9.9 117 182-335 9-135 (308)
76 1u94_A RECA protein, recombina 98.1 6.9E-06 2.4E-10 83.7 10.1 101 163-278 49-154 (356)
77 2h5e_A Peptide chain release f 98.1 5.7E-06 2E-10 88.6 9.1 150 183-353 13-167 (529)
78 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.5E-05 8.5E-10 72.9 12.5 41 182-222 22-62 (235)
79 2z43_A DNA repair and recombin 98.1 9.7E-06 3.3E-10 81.3 10.3 56 163-225 94-156 (324)
80 2rdo_7 EF-G, elongation factor 98.1 5.8E-05 2E-09 83.5 17.4 82 264-352 80-166 (704)
81 2xex_A Elongation factor G; GT 98.1 4.2E-05 1.4E-09 84.5 15.7 81 264-351 73-158 (693)
82 1v5w_A DMC1, meiotic recombina 98.1 1.6E-05 5.3E-10 80.5 11.2 56 163-225 109-171 (343)
83 3lda_A DNA repair protein RAD5 98.1 8.7E-05 3E-09 76.7 16.8 140 123-277 121-285 (400)
84 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 9.8E-06 3.3E-10 78.6 9.0 42 182-223 3-44 (260)
85 3iby_A Ferrous iron transport 98.0 1.5E-05 5.2E-10 77.2 10.2 93 264-356 46-147 (256)
86 2i1q_A DNA repair and recombin 98.0 2.4E-05 8.2E-10 78.1 11.7 91 123-225 41-157 (322)
87 3k53_A Ferrous iron transport 98.0 1.5E-05 5.2E-10 77.5 10.0 137 183-355 3-145 (271)
88 2r6a_A DNAB helicase, replicat 98.0 0.0011 3.8E-08 69.3 24.7 41 182-222 202-243 (454)
89 3bgw_A DNAB-like replicative h 98.0 0.0002 6.7E-09 75.0 18.5 118 182-305 196-318 (444)
90 2zr9_A Protein RECA, recombina 98.0 1.6E-05 5.5E-10 80.7 9.8 101 163-278 47-152 (349)
91 3j25_A Tetracycline resistance 98.0 6.8E-06 2.3E-10 90.0 7.4 137 186-352 5-151 (638)
92 3bh0_A DNAB-like replicative h 98.0 0.00021 7.1E-09 71.3 17.2 119 182-306 67-190 (315)
93 1dar_A EF-G, elongation factor 98.0 0.00011 3.8E-09 81.1 16.3 81 264-351 75-160 (691)
94 3io5_A Recombination and repai 97.9 4.4E-05 1.5E-09 76.3 11.1 101 163-278 12-124 (333)
95 4fn5_A EF-G 1, elongation fact 97.9 0.00016 5.6E-09 80.0 16.7 143 184-352 14-169 (709)
96 3i8s_A Ferrous iron transport 97.9 3.6E-05 1.2E-09 75.3 10.1 138 183-356 3-149 (274)
97 3a1s_A Iron(II) transport prot 97.9 2.8E-05 9.5E-10 75.4 9.2 137 184-356 6-147 (258)
98 2q6t_A DNAB replication FORK h 97.9 0.0015 5E-08 68.2 22.1 144 182-333 199-363 (444)
99 2ged_A SR-beta, signal recogni 97.9 0.00011 3.8E-09 66.5 11.7 23 182-204 47-69 (193)
100 1ega_A Protein (GTP-binding pr 97.9 6.5E-05 2.2E-09 74.5 10.9 120 182-336 7-130 (301)
101 4a1f_A DNAB helicase, replicat 97.8 0.00017 5.7E-09 72.9 13.6 128 163-305 34-164 (338)
102 3tr5_A RF-3, peptide chain rel 97.8 1.6E-05 5.6E-10 85.1 6.5 146 183-353 13-167 (528)
103 1n0w_A DNA repair protein RAD5 97.8 5.7E-05 2E-09 71.2 9.6 52 163-221 11-68 (243)
104 3b1v_A Ferrous iron uptake tra 97.8 5.3E-05 1.8E-09 74.2 9.6 137 183-356 3-144 (272)
105 3ec2_A DNA replication protein 97.8 6.5E-05 2.2E-09 68.0 9.4 86 183-289 38-124 (180)
106 1jwy_B Dynamin A GTPase domain 97.8 6.1E-05 2.1E-09 74.3 9.3 72 265-338 130-214 (315)
107 1wf3_A GTP-binding protein; GT 97.8 4.7E-05 1.6E-09 75.6 8.4 117 184-337 8-132 (301)
108 2i3b_A HCR-ntpase, human cance 97.8 4E-06 1.4E-10 77.8 0.3 27 185-211 3-29 (189)
109 2b8t_A Thymidine kinase; deoxy 97.7 7E-05 2.4E-09 71.2 8.5 101 182-292 11-114 (223)
110 3lxx_A GTPase IMAP family memb 97.7 0.00011 3.8E-09 69.7 9.8 89 264-352 76-185 (239)
111 2c78_A Elongation factor TU-A; 97.7 0.00021 7.1E-09 73.7 12.2 128 183-336 11-142 (405)
112 1np6_A Molybdopterin-guanine d 97.7 6.4E-05 2.2E-09 68.7 7.2 40 183-222 6-45 (174)
113 2p5t_B PEZT; postsegregational 97.7 0.00031 1.1E-08 67.5 12.4 43 180-225 29-71 (253)
114 2ce2_X GTPase HRAS; signaling 97.7 0.00028 9.5E-09 61.3 11.1 85 264-355 49-144 (166)
115 2wji_A Ferrous iron transport 97.7 0.00012 4E-09 65.1 8.7 88 265-352 49-141 (165)
116 1gvn_B Zeta; postsegregational 97.7 5.3E-05 1.8E-09 74.7 6.8 65 150-223 6-70 (287)
117 1pzn_A RAD51, DNA repair and r 97.7 0.00054 1.8E-08 69.4 14.2 88 123-221 73-175 (349)
118 2zts_A Putative uncharacterize 97.6 0.00017 5.8E-09 68.1 9.8 52 164-222 18-70 (251)
119 3lxw_A GTPase IMAP family memb 97.6 0.00017 5.6E-09 69.3 9.6 89 264-352 68-179 (247)
120 1cr0_A DNA primase/helicase; R 97.6 0.00065 2.2E-08 66.5 14.1 40 182-221 34-74 (296)
121 2ehv_A Hypothetical protein PH 97.6 0.00019 6.4E-09 67.9 9.8 41 182-222 29-70 (251)
122 2dyk_A GTP-binding protein; GT 97.6 0.0002 6.8E-09 62.4 9.3 70 265-337 48-123 (161)
123 1z0f_A RAB14, member RAS oncog 97.6 0.00027 9.1E-09 62.6 10.2 82 265-352 63-154 (179)
124 3bos_A Putative DNA replicatio 97.6 0.00024 8.2E-09 66.3 10.2 40 183-222 52-91 (242)
125 2xtp_A GTPase IMAP family memb 97.6 0.00011 3.9E-09 70.5 8.1 23 182-204 21-43 (260)
126 2yvu_A Probable adenylyl-sulfa 97.6 6.9E-05 2.3E-09 68.2 6.0 43 181-223 11-53 (186)
127 1q57_A DNA primase/helicase; d 97.6 0.00068 2.3E-08 71.8 14.5 41 182-222 241-282 (503)
128 2wjg_A FEOB, ferrous iron tran 97.6 0.00024 8.1E-09 63.9 9.5 133 182-353 6-146 (188)
129 4a74_A DNA repair and recombin 97.6 0.00025 8.7E-09 66.0 9.8 52 163-221 12-69 (231)
130 3gee_A MNME, tRNA modification 97.6 0.00071 2.4E-08 71.4 14.2 71 264-337 279-358 (476)
131 1g16_A RAS-related protein SEC 97.6 0.00027 9.1E-09 62.1 9.4 83 265-353 51-142 (170)
132 1d2e_A Elongation factor TU (E 97.6 0.00032 1.1E-08 72.2 11.3 126 184-336 4-133 (397)
133 1z2a_A RAS-related protein RAB 97.5 0.00012 4.1E-09 64.2 6.7 82 265-353 53-144 (168)
134 3clv_A RAB5 protein, putative; 97.5 0.00047 1.6E-08 62.1 10.7 82 266-353 93-181 (208)
135 1nlf_A Regulatory protein REPA 97.5 0.0012 4.1E-08 64.2 14.1 41 182-222 29-79 (279)
136 3tkl_A RAS-related protein RAB 97.5 0.00024 8.1E-09 64.3 8.4 85 265-355 64-158 (196)
137 2efe_B Small GTP-binding prote 97.5 0.00037 1.3E-08 62.0 9.4 83 265-353 60-152 (181)
138 1g5t_A COB(I)alamin adenosyltr 97.5 0.00043 1.5E-08 64.4 9.9 90 182-276 28-131 (196)
139 2hxs_A RAB-26, RAS-related pro 97.5 0.00093 3.2E-08 59.2 12.0 133 183-354 6-151 (178)
140 1h65_A Chloroplast outer envel 97.5 0.00027 9.2E-09 68.5 9.0 72 264-335 85-167 (270)
141 3avx_A Elongation factor TS, e 97.5 0.004 1.4E-07 71.8 19.7 125 184-336 297-426 (1289)
142 1z0j_A RAB-22, RAS-related pro 97.5 0.00023 7.9E-09 62.5 7.7 82 265-352 54-145 (170)
143 4dcu_A GTP-binding protein ENG 97.5 0.00011 3.8E-09 77.0 6.5 118 183-335 23-144 (456)
144 3def_A T7I23.11 protein; chlor 97.5 0.00022 7.6E-09 68.9 8.2 72 264-335 82-164 (262)
145 3t1o_A Gliding protein MGLA; G 97.5 0.00053 1.8E-08 61.7 10.2 82 264-352 72-168 (198)
146 3tw8_B RAS-related protein RAB 97.5 0.00019 6.6E-09 63.7 7.0 84 265-354 57-149 (181)
147 2nzj_A GTP-binding protein REM 97.5 0.00088 3E-08 59.1 11.2 83 265-352 51-145 (175)
148 2bcg_Y Protein YP2, GTP-bindin 97.4 0.00019 6.6E-09 65.8 6.9 83 265-353 56-148 (206)
149 4dhe_A Probable GTP-binding pr 97.4 0.00026 8.8E-09 65.7 7.9 73 264-336 77-158 (223)
150 2p5s_A RAS and EF-hand domain 97.4 0.00056 1.9E-08 62.5 10.0 23 182-204 27-49 (199)
151 2fg5_A RAB-22B, RAS-related pr 97.4 0.00021 7.3E-09 64.9 7.1 83 264-352 70-162 (192)
152 3cph_A RAS-related protein SEC 97.4 0.00049 1.7E-08 63.1 9.6 83 265-353 68-159 (213)
153 2axn_A 6-phosphofructo-2-kinas 97.4 0.00094 3.2E-08 71.3 12.9 44 181-224 33-76 (520)
154 1xx6_A Thymidine kinase; NESG, 97.4 0.00028 9.7E-09 65.4 7.8 96 182-292 7-106 (191)
155 2kjq_A DNAA-related protein; s 97.4 0.0003 1E-08 62.4 7.5 40 183-222 36-75 (149)
156 3con_A GTPase NRAS; structural 97.4 0.00039 1.3E-08 62.7 8.5 82 265-353 68-160 (190)
157 1nrj_B SR-beta, signal recogni 97.4 0.00034 1.2E-08 64.8 8.2 22 183-204 12-33 (218)
158 2dy1_A Elongation factor G; tr 97.4 0.0014 4.8E-08 72.0 14.3 140 182-349 8-154 (665)
159 1z08_A RAS-related protein RAB 97.4 0.00053 1.8E-08 60.2 9.1 83 265-353 54-146 (170)
160 2qu8_A Putative nucleolar GTP- 97.4 0.0012 4.1E-08 61.8 12.0 23 182-204 28-50 (228)
161 1tf7_A KAIC; homohexamer, hexa 97.4 0.00067 2.3E-08 72.4 11.4 88 182-274 280-379 (525)
162 1f60_A Elongation factor EEF1A 97.4 0.001 3.6E-08 69.7 12.6 66 264-335 83-158 (458)
163 2aka_B Dynamin-1; fusion prote 97.4 0.0023 7.7E-08 62.3 14.1 21 184-204 27-47 (299)
164 3p26_A Elongation factor 1 alp 97.4 0.00044 1.5E-08 73.0 9.6 67 264-336 109-185 (483)
165 2g0t_A Conserved hypothetical 97.4 0.001 3.5E-08 67.3 11.8 147 183-352 169-331 (350)
166 2hup_A RAS-related protein RAB 97.4 0.0008 2.7E-08 61.8 10.2 82 265-352 77-169 (201)
167 1zbd_A Rabphilin-3A; G protein 97.4 0.00069 2.4E-08 61.8 9.7 83 265-353 56-148 (203)
168 2g6b_A RAS-related protein RAB 97.4 0.0014 4.6E-08 58.2 11.4 83 265-353 59-151 (180)
169 2y8e_A RAB-protein 6, GH09086P 97.4 0.00032 1.1E-08 62.1 7.1 84 265-354 62-155 (179)
170 1svi_A GTP-binding protein YSX 97.4 0.0012 4.2E-08 59.5 11.1 23 182-204 22-44 (195)
171 2erx_A GTP-binding protein DI- 97.4 0.0011 3.6E-08 58.1 10.4 81 265-352 50-143 (172)
172 2x2e_A Dynamin-1; nitration, h 97.4 0.0002 6.8E-09 72.4 6.3 20 185-204 33-52 (353)
173 1u8z_A RAS-related protein RAL 97.3 0.00065 2.2E-08 59.2 8.9 81 265-352 51-143 (168)
174 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.3E-09 66.9 5.0 43 181-223 23-65 (200)
175 2a5j_A RAS-related protein RAB 97.3 0.00056 1.9E-08 62.0 8.7 83 265-353 69-161 (191)
176 3j2k_7 ERF3, eukaryotic polype 97.3 0.00043 1.5E-08 72.3 8.9 66 264-335 93-168 (439)
177 1fnn_A CDC6P, cell division co 97.3 0.0047 1.6E-07 61.9 16.4 103 185-292 46-150 (389)
178 2a9k_A RAS-related protein RAL 97.3 0.0008 2.7E-08 59.9 9.4 81 265-352 65-157 (187)
179 1zun_B Sulfate adenylate trans 97.3 0.0015 5E-08 68.0 12.8 65 264-336 102-171 (434)
180 1ek0_A Protein (GTP-binding pr 97.3 0.00056 1.9E-08 59.8 8.3 82 265-352 51-145 (170)
181 3cmu_A Protein RECA, recombina 97.3 0.0005 1.7E-08 83.2 10.3 87 182-275 1426-1515(2050)
182 1r2q_A RAS-related protein RAB 97.3 0.00041 1.4E-08 60.7 7.3 82 265-352 54-145 (170)
183 1rz3_A Hypothetical protein rb 97.3 0.00025 8.5E-09 65.7 6.1 42 182-223 21-62 (201)
184 3bc1_A RAS-related protein RAB 97.3 0.00075 2.6E-08 60.4 9.1 82 265-353 69-162 (195)
185 3t34_A Dynamin-related protein 97.3 0.0001 3.6E-09 74.6 3.7 74 265-338 135-219 (360)
186 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00055 1.9E-08 68.5 8.8 72 183-277 123-194 (331)
187 3q85_A GTP-binding protein REM 97.3 0.0016 5.4E-08 57.1 11.0 82 265-352 50-143 (169)
188 2gf9_A RAS-related protein RAB 97.3 0.00033 1.1E-08 63.3 6.6 84 264-353 69-162 (189)
189 1a7j_A Phosphoribulokinase; tr 97.3 0.00011 3.9E-09 72.4 3.8 42 182-223 4-45 (290)
190 2oil_A CATX-8, RAS-related pro 97.3 0.00034 1.2E-08 63.3 6.7 84 264-353 72-165 (193)
191 1ky3_A GTP-binding protein YPT 97.3 0.0014 4.7E-08 58.1 10.5 22 183-204 8-29 (182)
192 1nks_A Adenylate kinase; therm 97.3 0.0002 6.9E-09 64.7 5.0 37 184-220 2-38 (194)
193 2il1_A RAB12; G-protein, GDP, 97.3 0.00043 1.5E-08 63.0 7.2 65 265-335 74-144 (192)
194 2hjg_A GTP-binding protein ENG 97.3 0.00025 8.6E-09 73.8 6.3 116 185-335 5-124 (436)
195 2yc2_C IFT27, small RAB-relate 97.3 0.00076 2.6E-08 61.4 8.7 83 265-353 72-168 (208)
196 3t61_A Gluconokinase; PSI-biol 97.3 0.0025 8.5E-08 58.5 12.2 38 182-224 17-54 (202)
197 3c8u_A Fructokinase; YP_612366 97.3 0.00068 2.3E-08 63.0 8.4 43 181-223 20-62 (208)
198 2pez_A Bifunctional 3'-phospho 97.2 0.00024 8.2E-09 64.2 5.0 42 182-223 4-45 (179)
199 2fu5_C RAS-related protein RAB 97.2 0.001 3.5E-08 59.4 9.1 82 265-352 56-147 (183)
200 2lkc_A Translation initiation 97.2 0.00068 2.3E-08 60.1 7.9 67 264-336 53-121 (178)
201 1x3s_A RAS-related protein RAB 97.2 0.0006 2.1E-08 61.4 7.5 83 264-352 62-154 (195)
202 3pqc_A Probable GTP-binding pr 97.2 0.00074 2.5E-08 60.7 8.1 21 184-204 24-44 (195)
203 3geh_A MNME, tRNA modification 97.2 0.00087 3E-08 70.5 9.7 70 264-336 270-344 (462)
204 1m7g_A Adenylylsulfate kinase; 97.2 0.00022 7.4E-09 66.4 4.5 42 182-223 24-66 (211)
205 1dul_A Signal recognition part 97.2 3.3E-05 1.1E-09 59.5 -1.0 33 449-481 8-40 (69)
206 3cmw_A Protein RECA, recombina 97.2 0.0013 4.4E-08 78.7 11.9 90 182-277 1430-1521(1706)
207 1mky_A Probable GTP-binding pr 97.2 0.0015 5.1E-08 68.0 11.3 114 185-335 3-123 (439)
208 3cmw_A Protein RECA, recombina 97.2 0.0013 4.5E-08 78.7 12.0 102 164-278 370-474 (1706)
209 1kht_A Adenylate kinase; phosp 97.2 0.00022 7.6E-09 64.4 4.3 38 183-220 3-40 (192)
210 2ew1_A RAS-related protein RAB 97.2 0.00079 2.7E-08 62.2 8.1 82 265-352 74-165 (201)
211 2bov_A RAla, RAS-related prote 97.2 0.0019 6.4E-08 58.7 10.6 83 265-354 61-155 (206)
212 2o52_A RAS-related protein RAB 97.2 0.00096 3.3E-08 61.1 8.7 82 265-352 73-164 (200)
213 3tqc_A Pantothenate kinase; bi 97.2 0.00067 2.3E-08 68.0 8.1 43 181-223 90-134 (321)
214 3e1s_A Exodeoxyribonuclease V, 97.2 0.00058 2E-08 73.8 8.2 110 183-305 204-315 (574)
215 1jny_A EF-1-alpha, elongation 97.2 0.0012 4.2E-08 68.6 10.4 67 264-336 82-158 (435)
216 1kao_A RAP2A; GTP-binding prot 97.2 0.0017 5.9E-08 56.4 9.9 84 265-354 50-144 (167)
217 4dsu_A GTPase KRAS, isoform 2B 97.2 0.0015 5.2E-08 58.2 9.6 83 265-353 51-143 (189)
218 1odf_A YGR205W, hypothetical 3 97.2 0.00065 2.2E-08 67.0 7.5 43 181-223 29-74 (290)
219 4bas_A ADP-ribosylation factor 97.2 0.00079 2.7E-08 60.9 7.6 23 182-204 16-38 (199)
220 3cb4_D GTP-binding protein LEP 97.2 0.0011 3.6E-08 72.0 9.6 80 265-351 70-154 (599)
221 4dcu_A GTP-binding protein ENG 97.2 0.0029 9.8E-08 66.2 12.7 23 182-204 194-216 (456)
222 1nij_A Hypothetical protein YJ 97.1 0.0022 7.5E-08 63.9 11.3 172 184-359 5-189 (318)
223 3zvr_A Dynamin-1; hydrolase, D 97.1 0.0073 2.5E-07 67.0 16.4 74 265-339 149-234 (772)
224 3kkq_A RAS-related protein M-R 97.1 0.0031 1.1E-07 56.2 11.2 85 265-356 65-161 (183)
225 2ywe_A GTP-binding protein LEP 97.1 0.0014 4.8E-08 71.0 10.4 79 265-350 72-155 (600)
226 2bme_A RAB4A, RAS-related prot 97.1 0.0011 3.6E-08 59.4 8.0 82 265-352 58-149 (186)
227 1r8s_A ADP-ribosylation factor 97.1 0.0016 5.4E-08 56.8 9.0 68 264-337 42-116 (164)
228 1zj6_A ADP-ribosylation factor 97.1 0.0018 6.1E-08 58.3 9.6 110 182-336 15-131 (187)
229 3cmu_A Protein RECA, recombina 97.1 0.0011 3.8E-08 80.2 10.3 89 182-277 382-473 (2050)
230 1l8q_A Chromosomal replication 97.1 0.00064 2.2E-08 67.4 7.1 40 183-222 37-76 (324)
231 3dz8_A RAS-related protein RAB 97.1 0.00062 2.1E-08 61.6 6.4 83 264-352 70-162 (191)
232 1uj2_A Uridine-cytidine kinase 97.1 0.00033 1.1E-08 67.2 4.7 43 181-223 20-67 (252)
233 1z06_A RAS-related protein RAB 97.1 0.0011 3.8E-08 59.7 7.9 83 265-353 68-162 (189)
234 2h17_A ADP-ribosylation factor 97.1 0.00072 2.5E-08 60.7 6.3 110 182-336 20-136 (181)
235 3t5d_A Septin-7; GTP-binding p 97.1 0.0026 9E-08 61.6 10.8 21 184-204 9-29 (274)
236 1fzq_A ADP-ribosylation factor 97.1 0.0021 7.1E-08 57.8 9.4 110 182-336 15-131 (181)
237 1vg8_A RAS-related protein RAB 97.1 0.00054 1.9E-08 62.5 5.5 22 183-204 8-29 (207)
238 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.0022 7.5E-08 56.6 9.3 21 184-204 8-28 (177)
239 2f7s_A C25KG, RAS-related prot 97.0 0.00076 2.6E-08 62.3 6.4 84 265-354 83-177 (217)
240 2cxx_A Probable GTP-binding pr 97.0 0.0044 1.5E-07 55.3 11.2 20 185-204 3-22 (190)
241 2gf0_A GTP-binding protein DI- 97.0 0.005 1.7E-07 55.5 11.6 81 265-352 55-147 (199)
242 3dpu_A RAB family protein; roc 97.0 0.0059 2E-07 65.1 13.9 93 264-363 96-197 (535)
243 2fn4_A P23, RAS-related protei 97.0 0.0018 6E-08 57.3 8.3 22 183-204 9-30 (181)
244 1upt_A ARL1, ADP-ribosylation 97.0 0.00078 2.7E-08 59.2 5.9 67 265-337 50-123 (171)
245 2hjg_A GTP-binding protein ENG 97.0 0.0016 5.5E-08 67.7 9.2 23 182-204 174-196 (436)
246 2qby_A CDC6 homolog 1, cell di 97.0 0.0022 7.4E-08 64.1 9.8 94 181-277 43-140 (386)
247 1f6b_A SAR1; gtpases, N-termin 97.0 0.0018 6E-08 59.3 8.4 22 183-204 25-46 (198)
248 3umf_A Adenylate kinase; rossm 97.0 0.0025 8.5E-08 60.2 9.5 39 181-223 27-65 (217)
249 2qby_B CDC6 homolog 3, cell di 97.0 0.0046 1.6E-07 62.1 12.2 40 182-221 44-91 (384)
250 1c1y_A RAS-related protein RAP 97.0 0.0022 7.5E-08 55.9 8.5 82 264-352 49-143 (167)
251 3q72_A GTP-binding protein RAD 97.0 0.0021 7.3E-08 56.1 8.4 82 264-352 47-140 (166)
252 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0051 1.7E-07 62.5 12.4 21 184-204 180-200 (364)
253 2fh5_B SR-beta, signal recogni 97.0 0.0022 7.7E-08 58.9 8.9 22 183-204 7-28 (214)
254 1zd9_A ADP-ribosylation factor 97.0 0.0007 2.4E-08 61.2 5.3 66 264-336 65-138 (188)
255 1moz_A ARL1, ADP-ribosylation 97.0 0.0008 2.7E-08 60.0 5.5 110 182-336 17-133 (183)
256 4eaq_A DTMP kinase, thymidylat 97.0 0.019 6.3E-07 54.3 15.3 35 182-217 25-59 (229)
257 2b6h_A ADP-ribosylation factor 97.0 0.0025 8.6E-08 57.9 8.9 67 264-336 71-144 (192)
258 1nn5_A Similar to deoxythymidy 96.9 0.00086 2.9E-08 61.8 5.7 37 182-218 8-44 (215)
259 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.017 5.8E-07 54.7 15.0 73 182-277 38-110 (262)
260 2v1u_A Cell division control p 96.9 0.0053 1.8E-07 61.3 12.0 94 182-278 43-143 (387)
261 4fcw_A Chaperone protein CLPB; 96.9 0.0072 2.5E-07 58.9 12.5 42 183-224 47-88 (311)
262 2qpt_A EH domain-containing pr 96.9 0.0013 4.3E-08 70.7 7.5 22 183-204 65-86 (550)
263 1ly1_A Polynucleotide kinase; 96.9 0.00049 1.7E-08 61.5 3.6 37 183-223 2-38 (181)
264 3cpj_B GTP-binding protein YPT 96.9 0.00089 3E-08 62.4 5.6 82 265-352 61-152 (223)
265 2gj8_A MNME, tRNA modification 96.9 0.0011 3.7E-08 59.4 5.8 22 183-204 4-25 (172)
266 3syl_A Protein CBBX; photosynt 96.9 0.034 1.2E-06 54.0 17.2 38 182-219 66-107 (309)
267 2h57_A ADP-ribosylation factor 96.9 0.0011 3.9E-08 59.7 5.9 66 264-336 65-140 (190)
268 3gj0_A GTP-binding nuclear pro 96.9 0.00084 2.9E-08 62.4 5.2 82 264-352 62-151 (221)
269 1qhx_A CPT, protein (chloramph 96.9 0.00043 1.5E-08 62.1 3.1 37 183-222 3-39 (178)
270 1ksh_A ARF-like protein 2; sma 96.9 0.0028 9.4E-08 56.8 8.4 110 182-336 17-133 (186)
271 3sjy_A Translation initiation 96.9 0.0018 6.2E-08 66.6 8.0 66 266-337 75-144 (403)
272 3lv8_A DTMP kinase, thymidylat 96.9 0.0014 4.7E-08 62.8 6.6 43 179-221 23-65 (236)
273 2w58_A DNAI, primosome compone 96.9 0.00095 3.3E-08 61.2 5.2 38 183-220 54-91 (202)
274 1r5b_A Eukaryotic peptide chai 96.9 0.001 3.5E-08 69.9 6.1 66 264-335 119-194 (467)
275 3reg_A RHO-like small GTPase; 96.8 0.0016 5.5E-08 58.9 6.5 82 264-352 69-164 (194)
276 3asz_A Uridine kinase; cytidin 96.8 0.001 3.5E-08 61.4 5.3 38 182-222 5-42 (211)
277 2z0h_A DTMP kinase, thymidylat 96.8 0.0013 4.3E-08 59.8 5.7 34 185-218 2-35 (197)
278 2j9r_A Thymidine kinase; TK1, 96.8 0.0016 5.6E-08 61.3 6.6 38 181-218 26-63 (214)
279 3mca_A HBS1, elongation factor 96.8 0.00033 1.1E-08 76.0 2.0 23 184-206 178-200 (592)
280 3cbq_A GTP-binding protein REM 96.8 0.0058 2E-07 55.8 10.2 82 265-352 71-164 (195)
281 3oes_A GTPase rhebl1; small GT 96.8 0.0021 7.1E-08 58.7 7.2 82 264-352 70-163 (201)
282 3t5g_A GTP-binding protein RHE 96.8 0.0025 8.6E-08 56.7 7.4 81 265-352 53-145 (181)
283 2j1l_A RHO-related GTP-binding 96.8 0.0038 1.3E-07 57.8 8.8 22 183-204 34-55 (214)
284 3zvl_A Bifunctional polynucleo 96.8 0.0051 1.8E-07 63.6 10.7 38 181-223 256-293 (416)
285 1zo1_I IF2, translation initia 96.8 0.0016 5.5E-08 69.1 6.8 109 182-335 3-116 (501)
286 1m2o_B GTP-binding protein SAR 96.8 0.0024 8.1E-08 58.0 7.1 66 264-336 65-138 (190)
287 2plr_A DTMP kinase, probable t 96.8 0.0013 4.5E-08 60.3 5.4 35 182-217 3-37 (213)
288 1x6v_B Bifunctional 3'-phospho 96.8 0.001 3.5E-08 72.4 5.2 42 182-223 51-92 (630)
289 2wwf_A Thymidilate kinase, put 96.7 0.0013 4.5E-08 60.5 5.3 37 182-218 9-45 (212)
290 2orw_A Thymidine kinase; TMTK, 96.7 0.0016 5.3E-08 59.8 5.6 36 183-218 3-38 (184)
291 2pbr_A DTMP kinase, thymidylat 96.7 0.0017 5.7E-08 58.7 5.7 34 185-218 2-35 (195)
292 2elf_A Protein translation elo 96.7 0.003 1E-07 64.3 8.2 97 185-334 23-125 (370)
293 2f6r_A COA synthase, bifunctio 96.7 0.003 1E-07 61.8 7.9 37 180-222 72-108 (281)
294 2j69_A Bacterial dynamin-like 96.7 0.0043 1.5E-07 68.5 9.9 22 183-204 69-90 (695)
295 2gco_A H9, RHO-related GTP-bin 96.7 0.0031 1.1E-07 57.6 7.5 66 265-337 72-144 (201)
296 3h4m_A Proteasome-activating n 96.7 0.0039 1.3E-07 60.2 8.5 72 182-276 50-121 (285)
297 2atv_A RERG, RAS-like estrogen 96.7 0.0077 2.6E-07 54.5 10.0 80 265-352 75-166 (196)
298 3jvv_A Twitching mobility prot 96.7 0.01 3.6E-07 60.1 11.9 108 183-307 123-232 (356)
299 3bwd_D RAC-like GTP-binding pr 96.7 0.0018 6E-08 57.5 5.4 22 183-204 8-29 (182)
300 1n0u_A EF-2, elongation factor 96.7 0.0012 4.2E-08 74.4 5.3 64 265-335 97-163 (842)
301 1vco_A CTP synthetase; tetrame 96.7 0.0067 2.3E-07 64.8 10.7 40 183-222 12-53 (550)
302 1c9k_A COBU, adenosylcobinamid 96.7 0.0011 3.6E-08 61.0 3.9 33 185-221 1-33 (180)
303 3llm_A ATP-dependent RNA helic 96.7 0.013 4.5E-07 55.1 11.8 124 184-310 77-221 (235)
304 2rhm_A Putative kinase; P-loop 96.7 0.0016 5.5E-08 58.9 5.1 37 182-223 4-40 (193)
305 3te6_A Regulatory protein SIR3 96.6 0.042 1.5E-06 54.7 15.7 102 182-290 44-156 (318)
306 1s1m_A CTP synthase; CTP synth 96.6 0.006 2E-07 65.1 10.0 39 184-222 4-44 (545)
307 1m8p_A Sulfate adenylyltransfe 96.6 0.0012 4.1E-08 71.3 4.6 44 180-223 393-437 (573)
308 1g7s_A Translation initiation 96.6 0.0017 5.8E-08 70.4 5.8 24 182-205 4-27 (594)
309 1sq5_A Pantothenate kinase; P- 96.6 0.0018 6.2E-08 64.1 5.6 43 181-223 78-122 (308)
310 2gks_A Bifunctional SAT/APS ki 96.6 0.0022 7.4E-08 68.9 6.5 43 181-223 370-412 (546)
311 1gtv_A TMK, thymidylate kinase 96.6 0.00048 1.7E-08 63.6 1.2 37 185-221 2-38 (214)
312 2v54_A DTMP kinase, thymidylat 96.6 0.0021 7.2E-08 58.7 5.6 37 182-220 3-39 (204)
313 3t15_A Ribulose bisphosphate c 96.6 0.0016 5.5E-08 64.0 5.0 36 181-219 34-69 (293)
314 3sr0_A Adenylate kinase; phosp 96.6 0.0031 1E-07 59.0 6.6 86 185-278 2-87 (206)
315 4edh_A DTMP kinase, thymidylat 96.6 0.0024 8.2E-08 60.0 5.9 36 182-217 5-40 (213)
316 4djt_A GTP-binding nuclear pro 96.6 0.00075 2.6E-08 62.4 2.3 65 266-336 61-131 (218)
317 1wb1_A Translation elongation 96.6 0.0044 1.5E-07 65.4 8.5 64 264-336 71-139 (482)
318 2atx_A Small GTP binding prote 96.6 0.0083 2.9E-07 54.0 9.3 65 265-336 65-136 (194)
319 2z4s_A Chromosomal replication 96.6 0.005 1.7E-07 64.1 8.7 40 183-222 130-171 (440)
320 2x77_A ADP-ribosylation factor 96.5 0.0019 6.6E-08 58.1 4.8 68 264-337 64-138 (189)
321 2fv8_A H6, RHO-related GTP-bin 96.5 0.0036 1.2E-07 57.4 6.7 65 265-336 72-143 (207)
322 2jeo_A Uridine-cytidine kinase 96.5 0.0023 7.9E-08 60.9 5.3 44 179-222 21-69 (245)
323 3ld9_A DTMP kinase, thymidylat 96.5 0.0033 1.1E-07 59.6 6.3 44 180-223 18-62 (223)
324 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.015 5.3E-07 57.7 11.5 74 182-277 44-117 (322)
325 1knq_A Gluconate kinase; ALFA/ 96.5 0.0025 8.4E-08 57.0 5.1 37 182-223 7-43 (175)
326 2q3h_A RAS homolog gene family 96.5 0.0067 2.3E-07 55.0 8.2 22 183-204 20-41 (201)
327 2qt1_A Nicotinamide riboside k 96.5 0.0025 8.6E-08 58.7 5.3 38 181-222 19-56 (207)
328 1y63_A LMAJ004144AAA protein; 96.5 0.0017 6E-08 58.9 4.1 36 181-220 8-43 (184)
329 3llu_A RAS-related GTP-binding 96.5 0.014 4.8E-07 52.9 10.2 65 264-335 67-142 (196)
330 4eun_A Thermoresistant glucoki 96.5 0.0021 7.3E-08 59.1 4.7 37 182-223 28-64 (200)
331 2f1r_A Molybdopterin-guanine d 96.5 0.0015 5E-08 59.4 3.4 39 184-222 3-41 (171)
332 3aez_A Pantothenate kinase; tr 96.5 0.0033 1.1E-07 62.6 6.2 43 181-223 88-132 (312)
333 2j0v_A RAC-like GTP-binding pr 96.5 0.0026 9E-08 58.4 5.1 64 265-335 56-126 (212)
334 1mky_A Probable GTP-binding pr 96.4 0.021 7.2E-07 59.2 12.6 23 182-204 179-201 (439)
335 3l0i_B RAS-related protein RAB 96.4 0.00028 9.6E-09 64.5 -1.7 22 183-204 33-54 (199)
336 1jbk_A CLPB protein; beta barr 96.4 0.0036 1.2E-07 55.6 5.6 37 183-219 43-86 (195)
337 3exa_A TRNA delta(2)-isopenten 96.4 0.0089 3E-07 59.6 8.9 36 182-222 2-37 (322)
338 3d8b_A Fidgetin-like protein 1 96.4 0.011 3.8E-07 59.6 9.9 70 182-274 116-185 (357)
339 1w5s_A Origin recognition comp 96.4 0.021 7E-07 57.8 11.9 41 182-222 49-97 (412)
340 1g8f_A Sulfate adenylyltransfe 96.4 0.004 1.4E-07 66.2 6.7 40 182-221 394-435 (511)
341 3upu_A ATP-dependent DNA helic 96.4 0.015 5.3E-07 60.6 11.1 33 185-217 47-80 (459)
342 3d3q_A TRNA delta(2)-isopenten 96.4 0.0027 9.1E-08 64.0 5.0 35 183-222 7-41 (340)
343 3o47_A ADP-ribosylation factor 96.4 0.0036 1.2E-07 62.6 6.0 22 183-204 165-186 (329)
344 4dkx_A RAS-related protein RAB 96.4 0.036 1.2E-06 51.9 12.5 82 264-352 60-152 (216)
345 1tev_A UMP-CMP kinase; ploop, 96.4 0.0025 8.6E-08 57.5 4.3 34 182-220 2-35 (196)
346 1zp6_A Hypothetical protein AT 96.4 0.0025 8.6E-08 57.6 4.4 37 182-221 8-44 (191)
347 4b3f_X DNA-binding protein smu 96.4 0.0065 2.2E-07 66.3 8.4 55 185-242 207-261 (646)
348 3c5c_A RAS-like protein 12; GD 96.4 0.0087 3E-07 53.9 8.0 81 264-352 67-161 (187)
349 2iwr_A Centaurin gamma 1; ANK 96.3 0.015 5.1E-07 51.3 9.3 21 184-204 8-28 (178)
350 3vaa_A Shikimate kinase, SK; s 96.3 0.0023 8E-08 58.7 4.0 36 181-221 23-58 (199)
351 1s0u_A EIF-2-gamma, translatio 96.3 0.016 5.4E-07 59.6 10.5 64 266-336 81-149 (408)
352 4a9a_A Ribosome-interacting GT 96.3 0.011 3.7E-07 60.4 9.0 117 180-334 69-194 (376)
353 1lnz_A SPO0B-associated GTP-bi 96.3 0.0043 1.5E-07 62.6 5.9 81 266-349 206-301 (342)
354 1kk1_A EIF2gamma; initiation o 96.3 0.012 4.1E-07 60.5 9.4 63 266-336 83-151 (410)
355 2orv_A Thymidine kinase; TP4A 96.2 0.011 3.7E-07 56.4 8.1 85 181-278 17-103 (234)
356 2qgz_A Helicase loader, putati 96.2 0.0038 1.3E-07 61.9 5.2 38 183-220 152-190 (308)
357 3kb2_A SPBC2 prophage-derived 96.2 0.0026 8.8E-08 56.2 3.7 35 184-223 2-36 (173)
358 1qf9_A UMP/CMP kinase, protein 96.2 0.0035 1.2E-07 56.4 4.6 34 182-220 5-38 (194)
359 3lw7_A Adenylate kinase relate 96.2 0.0034 1.1E-07 55.2 4.4 28 184-215 2-29 (179)
360 2c95_A Adenylate kinase 1; tra 96.2 0.0028 9.5E-08 57.4 3.9 35 182-221 8-42 (196)
361 2chg_A Replication factor C sm 96.2 0.017 5.7E-07 52.4 9.2 28 186-213 41-68 (226)
362 3eie_A Vacuolar protein sortin 96.2 0.012 4.2E-07 58.2 8.9 73 182-277 50-122 (322)
363 3q3j_B RHO-related GTP-binding 96.2 0.0053 1.8E-07 56.9 5.8 65 264-335 73-144 (214)
364 4gp7_A Metallophosphoesterase; 96.2 0.0074 2.5E-07 54.2 6.4 22 182-203 8-29 (171)
365 4tmk_A Protein (thymidylate ki 96.2 0.0075 2.6E-07 56.6 6.6 39 183-222 3-42 (213)
366 3b9p_A CG5977-PA, isoform A; A 96.2 0.015 5.1E-07 56.5 9.1 73 182-277 53-125 (297)
367 3trf_A Shikimate kinase, SK; a 96.2 0.0031 1.1E-07 56.8 3.9 35 183-222 5-39 (185)
368 3izy_P Translation initiation 96.2 0.0025 8.4E-08 68.2 3.6 24 182-205 3-26 (537)
369 2cdn_A Adenylate kinase; phosp 96.2 0.0037 1.3E-07 57.3 4.4 35 181-220 18-52 (201)
370 1lv7_A FTSH; alpha/beta domain 96.1 0.031 1.1E-06 53.1 11.0 35 183-220 45-79 (257)
371 3v9p_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 59.0 4.6 35 182-216 24-62 (227)
372 3cm0_A Adenylate kinase; ATP-b 96.1 0.0036 1.2E-07 56.4 4.0 34 182-220 3-36 (186)
373 2p65_A Hypothetical protein PF 96.1 0.0043 1.5E-07 55.1 4.4 37 183-219 43-86 (187)
374 2vli_A Antibiotic resistance p 96.1 0.002 6.7E-08 57.8 2.2 31 182-215 4-34 (183)
375 1ukz_A Uridylate kinase; trans 96.1 0.0038 1.3E-07 57.1 4.1 36 180-220 12-47 (203)
376 3tau_A Guanylate kinase, GMP k 96.1 0.0027 9.2E-08 58.9 3.0 26 182-207 7-32 (208)
377 3qq5_A Small GTP-binding prote 96.1 0.0027 9.1E-08 66.0 3.2 87 267-355 84-175 (423)
378 3a8t_A Adenylate isopentenyltr 96.0 0.0043 1.5E-07 62.5 4.5 36 182-222 39-74 (339)
379 3r7w_A Gtpase1, GTP-binding pr 96.0 0.0098 3.3E-07 58.7 7.0 21 184-204 4-24 (307)
380 3lvq_E ARF-GAP with SH3 domain 96.0 0.012 4.2E-07 61.8 8.1 81 264-351 364-451 (497)
381 1sxj_E Activator 1 40 kDa subu 96.0 0.013 4.4E-07 58.3 7.8 26 182-208 36-61 (354)
382 2bwj_A Adenylate kinase 5; pho 96.0 0.004 1.4E-07 56.5 3.6 34 183-221 12-45 (199)
383 1njg_A DNA polymerase III subu 96.0 0.026 9.1E-07 51.6 9.4 28 183-210 45-72 (250)
384 4b4t_K 26S protease regulatory 96.0 0.022 7.5E-07 59.1 9.6 71 181-274 204-274 (428)
385 1uf9_A TT1252 protein; P-loop, 96.0 0.0053 1.8E-07 55.9 4.5 36 181-222 6-41 (203)
386 1kgd_A CASK, peripheral plasma 96.0 0.0036 1.2E-07 56.6 3.3 26 182-207 4-29 (180)
387 2qor_A Guanylate kinase; phosp 96.0 0.0029 9.9E-08 58.4 2.7 26 182-207 11-36 (204)
388 2ze6_A Isopentenyl transferase 96.0 0.0049 1.7E-07 59.2 4.4 34 184-222 2-35 (253)
389 4b4t_L 26S protease subunit RP 96.0 0.023 7.9E-07 59.1 9.7 71 181-274 213-283 (437)
390 1aky_A Adenylate kinase; ATP:A 95.9 0.0047 1.6E-07 57.5 4.1 34 182-220 3-36 (220)
391 3pzx_A Formate--tetrahydrofola 95.9 0.0088 3E-07 62.5 6.3 36 182-217 56-95 (557)
392 2eyu_A Twitching motility prot 95.9 0.01 3.4E-07 57.5 6.5 39 182-220 24-63 (261)
393 3a00_A Guanylate kinase, GMP k 95.9 0.0027 9.3E-08 57.7 2.2 26 183-208 1-26 (186)
394 1ltq_A Polynucleotide kinase; 95.9 0.0034 1.2E-07 61.3 3.0 37 183-223 2-38 (301)
395 3szr_A Interferon-induced GTP- 95.9 0.012 4.3E-07 63.7 7.7 73 265-337 146-229 (608)
396 3hjn_A DTMP kinase, thymidylat 95.9 0.0087 3E-07 55.3 5.6 33 185-217 2-34 (197)
397 4b4t_M 26S protease regulatory 95.9 0.021 7E-07 59.5 8.9 71 181-274 213-283 (434)
398 3foz_A TRNA delta(2)-isopenten 95.9 0.0099 3.4E-07 59.1 6.2 35 182-221 9-43 (316)
399 1zak_A Adenylate kinase; ATP:A 95.9 0.0041 1.4E-07 58.0 3.3 27 182-208 4-30 (222)
400 3iij_A Coilin-interacting nucl 95.9 0.0048 1.6E-07 55.4 3.6 34 182-220 10-43 (180)
401 3tlx_A Adenylate kinase 2; str 95.8 0.0064 2.2E-07 57.9 4.6 26 182-207 28-53 (243)
402 1wxq_A GTP-binding protein; st 95.8 0.027 9.2E-07 57.9 9.6 19 186-204 3-21 (397)
403 1kag_A SKI, shikimate kinase I 95.8 0.0038 1.3E-07 55.5 2.8 34 183-221 4-37 (173)
404 3u61_B DNA polymerase accessor 95.8 0.063 2.1E-06 52.7 11.9 40 182-224 47-86 (324)
405 3crm_A TRNA delta(2)-isopenten 95.8 0.0059 2E-07 61.1 4.3 35 183-222 5-39 (323)
406 3tr0_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 56.2 3.5 26 182-207 6-31 (205)
407 3th5_A RAS-related C3 botulinu 94.8 0.0016 5.4E-08 59.6 0.0 22 183-204 30-51 (204)
408 2c5m_A CTP synthase; cytidine 95.8 0.057 1.9E-06 51.7 10.5 41 183-223 23-65 (294)
409 1jjv_A Dephospho-COA kinase; P 95.7 0.005 1.7E-07 56.5 3.3 32 184-221 3-34 (206)
410 2bbw_A Adenylate kinase 4, AK4 95.7 0.0064 2.2E-07 57.7 4.1 26 182-207 26-51 (246)
411 1ofh_A ATP-dependent HSL prote 95.7 0.019 6.4E-07 55.7 7.5 38 182-222 49-86 (310)
412 2qp9_X Vacuolar protein sortin 95.7 0.019 6.7E-07 57.8 7.8 73 182-277 83-155 (355)
413 2qag_A Septin-2, protein NEDD5 95.7 0.015 5E-07 59.0 6.9 21 184-204 38-58 (361)
414 2iyv_A Shikimate kinase, SK; t 95.7 0.0049 1.7E-07 55.4 3.0 34 184-222 3-36 (184)
415 2grj_A Dephospho-COA kinase; T 95.7 0.0071 2.4E-07 55.8 4.1 36 182-222 11-46 (192)
416 1a5t_A Delta prime, HOLB; zinc 95.7 0.072 2.5E-06 53.0 11.8 28 182-209 23-50 (334)
417 3bs4_A Uncharacterized protein 95.7 0.029 9.9E-07 54.3 8.5 53 163-222 8-60 (260)
418 1tf7_A KAIC; homohexamer, hexa 95.7 0.031 1.1E-06 59.4 9.6 40 182-221 38-78 (525)
419 2vo1_A CTP synthase 1; pyrimid 95.7 0.11 3.9E-06 50.0 12.3 42 182-223 22-65 (295)
420 2j41_A Guanylate kinase; GMP, 95.7 0.0048 1.7E-07 56.3 2.8 26 182-207 5-30 (207)
421 1z6t_A APAF-1, apoptotic prote 95.7 0.043 1.5E-06 58.6 10.7 41 182-222 146-190 (591)
422 1d2n_A N-ethylmaleimide-sensit 95.7 0.018 6.1E-07 55.3 7.0 34 182-218 63-96 (272)
423 1zd8_A GTP:AMP phosphotransfer 95.6 0.0052 1.8E-07 57.6 3.0 34 182-220 6-39 (227)
424 1w4r_A Thymidine kinase; type 95.6 0.022 7.5E-07 52.8 7.1 39 182-220 19-57 (195)
425 2ewv_A Twitching motility prot 95.6 0.014 4.8E-07 59.4 6.3 38 182-219 135-173 (372)
426 4b4t_I 26S protease regulatory 95.6 0.056 1.9E-06 56.0 10.7 70 181-273 214-283 (437)
427 4b4t_J 26S protease regulatory 95.6 0.03 1E-06 57.6 8.7 70 182-274 181-250 (405)
428 1cke_A CK, MSSA, protein (cyti 95.5 0.0087 3E-07 55.6 4.2 34 183-221 5-38 (227)
429 1e6c_A Shikimate kinase; phosp 95.5 0.007 2.4E-07 53.6 3.3 34 184-222 3-36 (173)
430 1lvg_A Guanylate kinase, GMP k 95.5 0.0064 2.2E-07 56.0 3.2 26 183-208 4-29 (198)
431 2jaq_A Deoxyguanosine kinase; 95.5 0.0084 2.9E-07 54.4 3.9 24 185-208 2-25 (205)
432 1sxj_B Activator 1 37 kDa subu 95.5 0.026 8.9E-07 54.9 7.7 27 183-210 43-69 (323)
433 1xzp_A Probable tRNA modificat 95.5 0.011 3.7E-07 62.4 5.2 22 183-204 243-264 (482)
434 1zuh_A Shikimate kinase; alpha 95.5 0.0088 3E-07 53.0 3.8 34 183-221 7-40 (168)
435 3be4_A Adenylate kinase; malar 95.5 0.0097 3.3E-07 55.4 4.2 33 183-220 5-37 (217)
436 3n70_A Transport activator; si 95.5 0.013 4.3E-07 51.1 4.7 36 185-221 26-61 (145)
437 2r2a_A Uncharacterized protein 95.5 0.0086 2.9E-07 55.6 3.8 40 183-222 5-50 (199)
438 1vht_A Dephospho-COA kinase; s 95.5 0.014 4.8E-07 54.0 5.3 34 182-221 3-36 (218)
439 1bif_A 6-phosphofructo-2-kinas 95.5 0.0099 3.4E-07 62.3 4.7 42 181-222 37-78 (469)
440 2if2_A Dephospho-COA kinase; a 95.5 0.0065 2.2E-07 55.6 2.9 31 185-221 3-33 (204)
441 4b4t_H 26S protease regulatory 95.4 0.033 1.1E-06 58.2 8.5 71 181-274 241-311 (467)
442 3ney_A 55 kDa erythrocyte memb 95.4 0.0083 2.8E-07 55.7 3.5 26 182-207 18-43 (197)
443 3nh6_A ATP-binding cassette SU 95.4 0.028 9.6E-07 55.7 7.5 30 178-207 75-104 (306)
444 1via_A Shikimate kinase; struc 95.4 0.0088 3E-07 53.4 3.4 33 185-222 6-38 (175)
445 3ake_A Cytidylate kinase; CMP 95.3 0.0083 2.9E-07 54.7 3.2 33 185-222 4-36 (208)
446 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.9E-07 52.0 3.9 33 185-222 2-34 (168)
447 3vfd_A Spastin; ATPase, microt 95.3 0.037 1.3E-06 56.2 8.3 73 182-277 147-219 (389)
448 1sxj_C Activator 1 40 kDa subu 95.3 0.043 1.5E-06 54.5 8.6 26 186-211 49-74 (340)
449 3sfz_A APAF-1, apoptotic pepti 95.3 0.071 2.4E-06 61.5 11.6 40 182-221 146-189 (1249)
450 3cf0_A Transitional endoplasmi 95.3 0.021 7.1E-07 56.1 6.0 34 182-218 48-81 (301)
451 3eph_A TRNA isopentenyltransfe 95.3 0.017 5.7E-07 59.5 5.4 34 183-221 2-35 (409)
452 1r6b_X CLPA protein; AAA+, N-t 95.3 0.22 7.4E-06 55.1 14.9 36 184-222 489-524 (758)
453 1ak2_A Adenylate kinase isoenz 95.2 0.013 4.3E-07 55.2 4.2 34 182-220 15-48 (233)
454 3hws_A ATP-dependent CLP prote 95.2 0.03 1E-06 56.2 7.2 35 182-219 50-84 (363)
455 2a5y_B CED-4; apoptosis; HET: 95.2 0.063 2.2E-06 57.2 10.0 24 182-205 151-174 (549)
456 3cr8_A Sulfate adenylyltranfer 95.2 0.011 3.6E-07 63.6 3.9 41 182-222 368-409 (552)
457 2gk6_A Regulator of nonsense t 95.2 0.035 1.2E-06 60.3 8.1 53 185-240 197-250 (624)
458 2bdt_A BH3686; alpha-beta prot 95.2 0.01 3.5E-07 53.7 3.3 34 184-221 3-36 (189)
459 2ce7_A Cell division protein F 95.2 0.05 1.7E-06 57.2 9.0 71 183-276 49-119 (476)
460 3fb4_A Adenylate kinase; psych 95.2 0.012 4.3E-07 54.2 3.9 23 185-207 2-24 (216)
461 1z6g_A Guanylate kinase; struc 95.1 0.0088 3E-07 56.0 2.7 27 181-207 21-47 (218)
462 2xb4_A Adenylate kinase; ATP-b 95.1 0.018 6.2E-07 53.8 4.8 23 185-207 2-24 (223)
463 4hlc_A DTMP kinase, thymidylat 95.1 0.02 6.9E-07 53.2 5.1 33 184-217 3-35 (205)
464 4i1u_A Dephospho-COA kinase; s 95.1 0.14 4.9E-06 47.8 10.9 33 183-221 9-41 (210)
465 2qmh_A HPR kinase/phosphorylas 95.1 0.021 7.2E-07 53.2 5.0 34 182-221 33-66 (205)
466 3r20_A Cytidylate kinase; stru 95.0 0.015 5E-07 55.5 3.9 35 182-221 8-42 (233)
467 3lnc_A Guanylate kinase, GMP k 95.0 0.0074 2.5E-07 56.7 1.7 27 181-207 25-52 (231)
468 1e4v_A Adenylate kinase; trans 95.0 0.019 6.6E-07 53.1 4.5 30 185-219 2-31 (214)
469 2pl3_A Probable ATP-dependent 94.9 0.16 5.5E-06 47.2 11.0 39 185-225 64-109 (236)
470 3cf2_A TER ATPase, transitiona 94.9 0.11 3.7E-06 58.1 11.1 71 181-274 236-306 (806)
471 1htw_A HI0065; nucleotide-bind 94.9 0.018 6.2E-07 51.3 4.0 27 181-207 31-57 (158)
472 3nva_A CTP synthase; rossman f 94.9 0.14 4.7E-06 54.2 11.2 41 183-223 3-45 (535)
473 1znw_A Guanylate kinase, GMP k 94.9 0.015 5.1E-07 53.6 3.5 26 182-207 19-44 (207)
474 3dl0_A Adenylate kinase; phosp 94.9 0.014 4.7E-07 53.9 3.2 31 185-220 2-32 (216)
475 2wjy_A Regulator of nonsense t 94.8 0.048 1.6E-06 61.1 8.0 54 185-241 373-427 (800)
476 1p9r_A General secretion pathw 94.8 0.025 8.5E-07 58.5 5.3 38 182-219 166-203 (418)
477 4e22_A Cytidylate kinase; P-lo 94.8 0.016 5.4E-07 55.5 3.6 26 182-207 26-51 (252)
478 1ye8_A Protein THEP1, hypothet 94.8 0.019 6.6E-07 52.1 4.0 24 185-208 2-25 (178)
479 2zan_A Vacuolar protein sortin 94.8 0.028 9.7E-07 58.4 5.7 37 182-220 166-202 (444)
480 1t6n_A Probable ATP-dependent 94.8 0.16 5.4E-06 46.7 10.3 33 186-218 54-89 (220)
481 3hu3_A Transitional endoplasmi 94.8 0.053 1.8E-06 57.2 7.8 70 182-274 237-306 (489)
482 2bjv_A PSP operon transcriptio 94.8 0.023 7.7E-07 54.3 4.6 42 185-226 31-72 (265)
483 1ex7_A Guanylate kinase; subst 94.8 0.014 4.6E-07 53.7 2.8 22 185-206 3-24 (186)
484 1s96_A Guanylate kinase, GMP k 94.8 0.017 5.7E-07 54.4 3.5 27 182-208 15-41 (219)
485 1udx_A The GTP-binding protein 94.7 0.11 3.6E-06 53.8 9.8 22 183-204 157-178 (416)
486 1jr3_A DNA polymerase III subu 94.7 0.075 2.6E-06 52.9 8.5 27 183-209 38-64 (373)
487 2ocp_A DGK, deoxyguanosine kin 94.7 0.017 5.8E-07 54.6 3.5 27 182-208 1-27 (241)
488 3pxg_A Negative regulator of g 94.7 0.027 9.4E-07 58.9 5.3 25 185-209 203-227 (468)
489 1hv8_A Putative ATP-dependent 94.6 0.15 5.2E-06 50.0 10.2 130 185-318 46-199 (367)
490 2c9o_A RUVB-like 1; hexameric 94.5 0.1 3.5E-06 54.2 9.3 27 182-208 62-88 (456)
491 3fe2_A Probable ATP-dependent 94.4 0.26 9E-06 46.1 11.1 57 185-243 68-135 (242)
492 4ag6_A VIRB4 ATPase, type IV s 94.4 0.038 1.3E-06 56.1 5.5 37 184-220 36-72 (392)
493 3tui_C Methionine import ATP-b 94.3 0.1 3.4E-06 53.0 8.4 30 178-207 49-78 (366)
494 1sxj_A Activator 1 95 kDa subu 94.3 0.038 1.3E-06 58.6 5.3 39 183-224 77-115 (516)
495 2vp4_A Deoxynucleoside kinase; 94.3 0.025 8.7E-07 53.1 3.6 35 181-219 18-52 (230)
496 3ly5_A ATP-dependent RNA helic 94.2 0.33 1.1E-05 46.2 11.5 39 186-226 94-139 (262)
497 1q3t_A Cytidylate kinase; nucl 94.2 0.033 1.1E-06 52.4 4.2 37 181-222 14-50 (236)
498 1vec_A ATP-dependent RNA helic 94.2 0.51 1.8E-05 42.5 12.2 34 185-218 42-78 (206)
499 2x8a_A Nuclear valosin-contain 94.1 0.043 1.5E-06 53.3 5.0 31 186-219 47-77 (274)
500 3ber_A Probable ATP-dependent 94.1 0.55 1.9E-05 44.3 12.7 56 185-242 82-143 (249)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-69 Score=566.46 Aligned_cols=397 Identities=34% Similarity=0.597 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 011624 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (481)
Q Consensus 83 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 162 (481)
|||++|+++|+++++++.+...++++++++++++|+.+|+++||+.+++.+|++++++...+.++..++++.+++.++++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
++|.+++++....+... .+|.+|+++|++||||||++++||.+|+++|++|+++++|+|||++++|+..|++..|++++
T Consensus 81 ~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 99999998743333332 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~ 322 (481)
..+...+|.+++++++..++.++||+|||||||+.+.+..++.++..+.....|+.++||+|+++++++.++++.|++.+
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 88888899999999999987678999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhH--HHH
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEE 400 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~--~~~ 400 (481)
++.|||+||+|+++++|.++++...+|+||.|+|+|++++||++|+|+++++++||+||+.+|+|++++..++++ . +
T Consensus 240 ~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~-~ 318 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKE-E 318 (443)
T ss_dssp TTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHH-H
T ss_pred CCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998775 5 4
Q ss_pred HHHhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCC-ccccccchhhhcchhHHHHHHccChhhhccCCccccccc
Q 011624 401 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTF 479 (481)
Q Consensus 401 ~~~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~-~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~ 479 (481)
+.+++.+++|||+||++|++++.+||+++++++|+||+++ +........+..|+++++||+|||++|+.+|.|+++||+
T Consensus 319 ~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~~~sr~ 398 (443)
T 3dm5_A 319 DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINYSRI 398 (443)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCC-------------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGCCHHHH
T ss_pred HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhcChHHH
Confidence 8889999999999999999999999999999999999873 433333445778899999999999999999999999998
Q ss_pred CC
Q 011624 480 KR 481 (481)
Q Consensus 480 ~~ 481 (481)
+|
T Consensus 399 ~r 400 (443)
T 3dm5_A 399 KR 400 (443)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=1.1e-65 Score=538.03 Aligned_cols=392 Identities=34% Similarity=0.554 Sum_probs=346.1
Q ss_pred HHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHh
Q 011624 90 SGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLM 169 (481)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l 169 (481)
++|+++++++.+...++++++++++++|+.+|+++||+.+++.+|++++++.+.+.++..++++.+++.++++++|.+++
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred cCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCC
Q 011624 170 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 249 (481)
Q Consensus 170 ~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~ 249 (481)
++..........+|++++++|++||||||++++||.+|+++|++|+++++|+||+++++|+..+++..|++++......+
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC
Confidence 97533222233468999999999999999999999999999999999999999999999999999999999998887888
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEcCCCCcc--ccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEE
Q 011624 250 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327 (481)
Q Consensus 250 ~~~~l~~~l~~~~~~~~D~VIIDt~G~~~--~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~Gv 327 (481)
|..++..++..+...+||+|||||||+.+ .+..++.++..+.....|++++||+|+++++++.++++.|++.+++.||
T Consensus 164 p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gV 243 (433)
T 3kl4_A 164 PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSV 243 (433)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEE
Confidence 99988888888866799999999999998 8999999999999999999999999999999999999999989999999
Q ss_pred EEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHHhhhc
Q 011624 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 407 (481)
Q Consensus 328 IlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~k~~~ 407 (481)
|+||+|+++++|.++++...+|+||.|+|+|++++||++|+|+++++++||+||+.+++|++++..++++.+++.+++.+
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~ 323 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVME 323 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC---------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred c--cccHHHHHHHHhhhhccCCccccccCCCCCCC-cc---ccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 408 A--NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-IT---PAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 408 ~--~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~-~~---~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
+ +||++||++|++++.+||+++++++|+||+++ ++ .......+..|+++++||+|||++|+.+|.|+++||++|
T Consensus 324 g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~~~sr~~r 403 (433)
T 3kl4_A 324 GKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKSRMRR 403 (433)
T ss_dssp ----CCHHHHHHHHHHHHHCCSSSGGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCccccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhccHHHHHH
Confidence 9 89999999999999999999999999999874 32 122334567889999999999999999999999999886
No 3
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=1.2e-62 Score=516.74 Aligned_cols=398 Identities=48% Similarity=0.769 Sum_probs=356.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
||++|+++|+++++++.++..++++++++++++|+.+|+++||+.+++++|+++++++..+.++..+.+|.+++.+++++
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
++.+++++...++.+...+|++|+++|++||||||++++||.+|+++ |++|++||+|+||+++++|+..++...|++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999997655566555678999999999999999999999999998 99999999999999999999889999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~ 322 (481)
..+...+|.+++++++..+...+||+|||||||+++.+..++.++..+..+..|+++++|+|+++++++...++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l 240 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccC
Confidence 88777788888888888876578999999999999888889999988888888999999999988889999999998889
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHH
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~ 402 (481)
++.|||+||+|++++++.++++...+++|+.|+|.|++++++.+|+|++++++++|+||+.+++|.+++.+++++..++.
T Consensus 241 ~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~ 320 (433)
T 2xxa_A 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (433)
T ss_dssp CCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777788899
Q ss_pred Hhhhcc-cccHHHHHHHHhhhhccCCccccccCCCCCCCcccccc-chhhhcchhHHHHHHccChhhhccCCcccccccC
Q 011624 403 KKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFK 480 (481)
Q Consensus 403 ~k~~~~-~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~ 480 (481)
+|+.++ +|+++++++|++++.+||+++++++|+||++.+..... ...+..++++++||.|||++||.+|.++++||+|
T Consensus 321 ~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~~sr~~ 400 (433)
T 2xxa_A 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKR 400 (433)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC---------------CHHHHHHHHHHHHTSCHHHHHCGGGCCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhhhhhhccccHHHHHHHHHHHHcCCHHHhcCccccCHHHHH
Confidence 999999 89999999999999999999999999999865431111 0234568999999999999999999999999987
Q ss_pred C
Q 011624 481 R 481 (481)
Q Consensus 481 ~ 481 (481)
|
T Consensus 401 r 401 (433)
T 2xxa_A 401 R 401 (433)
T ss_dssp H
T ss_pred H
Confidence 6
No 4
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=5e-62 Score=509.53 Aligned_cols=387 Identities=45% Similarity=0.726 Sum_probs=349.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
||++|+++|+++++++.++..++++++++.+++|+.+|+++||+.+++++|+++++++..+.++..+.+|.+++.+++++
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
+|...++....++.+. +|.+++++|++|+||||++.+||.+++.+|++|+++++|+|||++.+|+..+++..|++++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998755455555 68899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.+...+|.++++++++.++..+||+|||||||+++.+..++.++..+.....|++++||+|+++++++++.++.|++.++
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~ 238 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC
Confidence 87777888888888888755799999999999998888899999988888889999999999888999999999998899
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHHH
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~~ 403 (481)
+.|||+||+|++.++|.++++...+|+||.|+|.|++++|+++|+|++++++++|+||+.+++|.+++..++++..++
T Consensus 239 i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~-- 316 (425)
T 2ffh_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKS-- 316 (425)
T ss_dssp CCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC-----------
T ss_pred ceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999887665544333
Q ss_pred hhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCccccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 404 k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
.+ +|+++|+++|++++.+||+++++++|+||++. .....+..|+++++||+|||++|+.+|.++++||++|
T Consensus 317 --~~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~----~~~~~~~~~~~~~~i~~smt~~e~~~p~~~~~sr~~r 387 (425)
T 2ffh_A 317 --AK-ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKR 387 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC----CTTSCHHHHHHHHHHHHTSCHHHHHCGGGCCHHHHHH
T ss_pred --HH-hcCHHHHHHHHHHhhCcCChhhhhccCCCchh----hccccHHHHHHHHHHHHcCCHHHhcCccccChHHHHH
Confidence 22 89999999999999999999999999999752 1124466889999999999999999999999999876
No 5
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=9e-58 Score=486.73 Aligned_cols=398 Identities=30% Similarity=0.539 Sum_probs=348.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 011624 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (481)
Q Consensus 83 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 162 (481)
|||++|+++|+++++++.+...++++++++++++++.+|+++||+.+++++|+++++++..+.++..++++.+++.++++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
++|.++++....++.+...+|++|+++|++||||||++.+||.+|+++|++|++|++|+|||++++++..++...+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999999765555554567899999999999999999999999999999999999999999999999999888999998
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC
Q 011624 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (481)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~ 322 (481)
......+|.+++++++..+.+.+||++||||||+.+.+..++.++..+.....|+.+++|+|++.+++....++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~ 240 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc
Confidence 87777788888888888876689999999999999877778888877776668899999999988877778888887767
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHH
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~ 402 (481)
++.++|+||+|...+++.++++.+.+|+||.|+|.+++++|+.+|+|..++++++|.||+.+++|.+.+. .+++.+++.
T Consensus 241 ~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~ 319 (504)
T 2j37_W 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALI 319 (504)
T ss_dssp CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTT
T ss_pred CceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 8889999999999888888889999999999999999999999999999999999999999999988877 344455678
Q ss_pred HhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCC--ccccccchhhhcchhHHHHHHccChhhhcc---CCcc--c
Q 011624 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPGIFFF---SIII--I 475 (481)
Q Consensus 403 ~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~--~~~~~~~d~a~~f~~~~~li~sm~~e~~~~---~~l~--~ 475 (481)
+|+.+++|++++|+++++++.++|++.++++++||++. +.......++..++++++||+|||++||.+ |.+| +
T Consensus 320 ~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~ 399 (504)
T 2j37_W 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQ 399 (504)
T ss_dssp TSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCC
Confidence 89999999999999999999999999999999999865 432222234567899999999999999999 8899 8
Q ss_pred ccccCC
Q 011624 476 GLTFKR 481 (481)
Q Consensus 476 ~~~~~~ 481 (481)
+||++|
T Consensus 400 ~sr~~r 405 (504)
T 2j37_W 400 PGRIQR 405 (504)
T ss_dssp THHHHH
T ss_pred hHHHHH
Confidence 999876
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=4.8e-57 Score=474.20 Aligned_cols=394 Identities=38% Similarity=0.643 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHH
Q 011624 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (481)
Q Consensus 85 ~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (481)
|++|+++|+++++++.+.+.++++++++.+++++.+|+++||+..++++++.++++...+.++..++++.+++.++++++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999998888888889998899999999
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecC
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 244 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~ 244 (481)
+.+++++...++.....+|++|+++|++||||||++.+||.+++++|++|+++++|+|||++++++..++...|++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999876444544445678999999999999999999999999999999999999999999999998888899999987
Q ss_pred C-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC-
Q 011624 245 G-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI- 322 (481)
Q Consensus 245 ~-~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~- 322 (481)
. ...+|.+++.+++..+ .+||+|||||||+.+.+..++.++..+.....|+.+++|+|++.++++...++.|+..+
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~ 238 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVG 238 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhccc
Confidence 5 4445555556666665 78999999999999878888899888888788999999999988888888888888778
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchhHHHHHHHHHhhchhHHHHHH
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~~~lve~a~e~~~~~~~~~~~ 402 (481)
++.|+|+||+|...+++.++++...++.|+.|+|.|++++|+.+|.|.+++++++|+||+.+++|.+.+.+++++ .++.
T Consensus 239 ~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~ 317 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESI 317 (432)
T ss_dssp SCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTH
T ss_pred CCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHH
Confidence 889999999999988888889999999999999999999999999999999999999999999999998887766 7789
Q ss_pred HhhhcccccHHHHHHHHhhhhccCCccccccCCCCCCCcc-ccccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 403 ~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~-~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
+++..++|++++++++++++.+||+++++++|+||++.+. ......++..+.+++++|.|||++||.+|.+|++||+||
T Consensus 318 ~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i~~sr~~r 397 (432)
T 2v3c_C 318 DAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIRR 397 (432)
T ss_dssp HHHCCSCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTCCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCccccCHHHHHH
Confidence 9999999999999999999999999999999999965421 111112345679999999999999999999999999876
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.4e-43 Score=355.12 Aligned_cols=293 Identities=37% Similarity=0.594 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHH
Q 011624 86 GQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDEL 165 (481)
Q Consensus 86 ~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 165 (481)
++|+++|+++++++.+++.++++++++++++++++|+++||+.+++++|+++++++..+.++.++.++.+++.+++.+++
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHhcCcccc-ccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecC
Q 011624 166 VKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 244 (481)
Q Consensus 166 ~~~l~~~~~~-~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~ 244 (481)
...+++...+ +.+... +.+++++|++|+||||++.+||.+++.+|++|+++|+|+|||++.+|+..+++..|++++..
T Consensus 81 ~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999876544 555544 89999999999999999999999999999999999999999999999998998899999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCcc--ccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC
Q 011624 245 GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (481)
Q Consensus 245 ~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~--~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~ 322 (481)
....+|.++++++++.+++.+||+|||||||+.+ .+..++.++.++.....++.+++|+|+++++++...++.|++.+
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~ 239 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS 239 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhC
Confidence 6667888888888888866799999999999998 76778888887777778899999999988888888888898788
Q ss_pred CeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCC
Q 011624 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGl 379 (481)
++.|+|+||+|...++|.++++...+++||.|++.|++++|+++|+|+++++++||+
T Consensus 240 ~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp TTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999999999999999999986
No 8
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=3.1e-41 Score=338.00 Aligned_cols=295 Identities=49% Similarity=0.794 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 011624 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (481)
Q Consensus 84 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (481)
||++|+++|+++++++.+++.++++++.+.+++++..|+.+|++..+++++++++.....+..+..+.++.+++.+.+.+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999887777655455677788888889
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeec
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~ 243 (481)
.+...++....++.+. ++.+++++|++|+||||++.+||..++..|.+|+++++|++|+.+.+|+..+.+..|++++.
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 9988887543345554 67899999999999999999999999999999999999999999999988888888999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCC
Q 011624 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (481)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~ 323 (481)
.+...+|.++.+.++..+...+||+|||||||..+.|...+.++..+.....|+.+++|+|+.+++++.+.++.|++.++
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~ 238 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCC
Confidence 76667888887888888755789999999999988888899999888888889999999999878888888888988899
Q ss_pred eeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCc
Q 011624 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 324 i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlg 380 (481)
+.|+|+||+|.+.++|.++++...+|+||.|+|+||+++|+++|+|+++++++||+|
T Consensus 239 i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 9
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2.8e-41 Score=342.71 Aligned_cols=299 Identities=34% Similarity=0.564 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------------------CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Q 011624 80 VRAEMFGQLTSGLEAAWNKLK-------------------GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSE 140 (481)
Q Consensus 80 ~~~~~~~~l~~~l~~~~~~~~-------------------~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~ 140 (481)
+-++||++|+++|+++.+++. +...++++++++++++|+.+|+++||+.+++++|++++++
T Consensus 3 ~~~~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~ 82 (328)
T 3e70_C 3 HMASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQ 82 (328)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 347899999999998887433 2678999999999999999999999999999999999999
Q ss_pred HHhhccccCCCChhHHHHHHHHHHHHHHhcCcccccc-----ccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 141 QAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELV-----FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~-----~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
++.+.++..+.++.+.+.+++++++.+++++.. ++. ....+|.+++++|++|+||||++.+||..+...|.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 83 KLVGKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp HHTTCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHhhcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 999988888888999999999999999998643 222 13457899999999999999999999999999999999
Q ss_pred EEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccC
Q 011624 216 LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 295 (481)
Q Consensus 216 LId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~ 295 (481)
++++|+||+++.+|+..++...|++++......+|...+.+.+......++|+++|||+|+.+.+..++.++..+.+++.
T Consensus 162 l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~ 241 (328)
T 3e70_C 162 IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK 241 (328)
T ss_dssp EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHC
T ss_pred EEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887777888888877777665578999999999998888889999999988889
Q ss_pred CceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhh
Q 011624 296 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGR 375 (481)
Q Consensus 296 p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r 375 (481)
|+++++|+|+++++++.++++.|+...+++++|+||+|++.++|.++++...+|+||.|+|.|++++|+++|+|++++++
T Consensus 242 ~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ 321 (328)
T 3e70_C 242 PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLER 321 (328)
T ss_dssp CSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHH
T ss_pred CCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 011624 376 ILGM 379 (481)
Q Consensus 376 ~lGl 379 (481)
++|-
T Consensus 322 llg~ 325 (328)
T 3e70_C 322 IFGE 325 (328)
T ss_dssp HTC-
T ss_pred HhCC
Confidence 9986
No 10
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=7.3e-40 Score=331.44 Aligned_cols=286 Identities=28% Similarity=0.461 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHhhC-CCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHH
Q 011624 86 GQLTSGLEAAWNKLKG-EETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (481)
Q Consensus 86 ~~l~~~l~~~~~~~~~-~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (481)
.+++++|.+.++++.+ ...+++ +.+++|+++|+++||+.+++++|+++++++..+.++. ..+.++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 81 (320)
T 1zu4_A 12 LKSAFNFSKDIKKLSKKYKQADD----EFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSF------ENIKDALVES 81 (320)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhH------HHHHHHHHHH
Confidence 3445555555555543 466776 3689999999999999999999999999987655432 1278899999
Q ss_pred HHHHhcCcc-----ccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhh---h
Q 011624 165 LVKLMGGEV-----SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE---Q 236 (481)
Q Consensus 165 L~~~l~~~~-----~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~---~ 236 (481)
|.++++... ..+.+...++.+++++|++|+||||++.+||.+++.+|.+|+++|+|+||+++.+++..+.+ .
T Consensus 82 l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~ 161 (320)
T 1zu4_A 82 LYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLN 161 (320)
T ss_dssp HHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSC
T ss_pred HHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhcccc
Confidence 999998655 45666667789999999999999999999999999999999999999999999889888876 6
Q ss_pred cCCCee-cCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccC------CceEEEEEeCcchH
Q 011624 237 VGVPVY-TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQ 309 (481)
Q Consensus 237 ~gv~v~-~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~------p~~vvLVvda~~~~ 309 (481)
.+++++ ......+|...+.+.+......+||+|||||||+++.+..++.++.++..++. |+.+++|+++++++
T Consensus 162 ~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~ 241 (320)
T 1zu4_A 162 NKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ 241 (320)
T ss_dssp TTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH
T ss_pred CCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH
Confidence 788888 43445677777667776655579999999999999877778888877665543 78999999998888
Q ss_pred HHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCchh
Q 011624 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382 (481)
Q Consensus 310 ~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlgd~ 382 (481)
+.+..++.|++.+++.|+|+||+|++..+|.++++...+|+||.|+|.||+++|+++|+|++++++++| ++.
T Consensus 242 ~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 242 NGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp HHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence 888889899888999999999999999999999999999999999999999999999999999999998 443
No 11
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=1.3e-39 Score=327.54 Aligned_cols=279 Identities=37% Similarity=0.625 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHH-------HHhh-CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCCh
Q 011624 82 AEMFGQLTSGLEAAW-------NKLK-GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRP 153 (481)
Q Consensus 82 ~~~~~~l~~~l~~~~-------~~~~-~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~ 153 (481)
+.+|+.|.++|+++. +++. ++ .+++ +.+++|+++|+++||+.+++++|++++++ .++
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~ 77 (306)
T 1vma_A 13 MGLFDFLKKGLQKTKETFFGRVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE----------KDG 77 (306)
T ss_dssp -CHHHHHHHHHHHHHHHTHHHHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCH
Confidence 445566666555443 3333 34 6665 57899999999999999999999999865 234
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHh
Q 011624 154 DQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233 (481)
Q Consensus 154 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~ 233 (481)
. +.++++++|.++++... ++.+...+|.+++++|++|+||||++.+||..++..|.+|+++++|+||+++.+|+..+
T Consensus 78 ~--~~~~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~ 154 (306)
T 1vma_A 78 D--ALESLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIW 154 (306)
T ss_dssp C--HHHHHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHH
Confidence 3 78899999999998654 55555567899999999999999999999999999999999999999999999999989
Q ss_pred hhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc------CCceEEEEEeCcc
Q 011624 234 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMT 307 (481)
Q Consensus 234 ~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~------~p~~vvLVvda~~ 307 (481)
.+..|++++......+|..++.+++..+...+||+|||||||+.+.+..++.++.++...+ .|+.+++|+|+++
T Consensus 155 ~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 155 GERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp HHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred HHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 9989999987766778888777777776568999999999999877778888888777654 3789999999998
Q ss_pred hHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 308 GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 308 ~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
+++++.+++.|...+++.|+|+||+|++..+|.++++...+++||.|+|.||+++|+++|+|+++++++||
T Consensus 235 ~~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 235 GQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99888889999888999999999999999999999999999999999999999999999999999999987
No 12
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=3.4e-37 Score=325.17 Aligned_cols=293 Identities=35% Similarity=0.595 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCC
Q 011624 80 VRAEMFGQLTSGLEAAWNKL-------KGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVR 152 (481)
Q Consensus 80 ~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~ 152 (481)
.++.||++|.++|+++.+.| ...+.+++ +.+++|+..|+++||+.+++++|+++++++..+. +++
T Consensus 191 ~~~~~~~~l~~~l~kt~~~l~~~l~~~~~~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~----~~~ 262 (503)
T 2yhs_A 191 TKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRK----QLR 262 (503)
T ss_dssp CHHHHHHHHHHHTHHHHTTSTTHHHHHHTTCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cCC
Confidence 35689999999988775443 23355554 4789999999999999999999999999887664 356
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH
Q 011624 153 PDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI 232 (481)
Q Consensus 153 ~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~ 232 (481)
+.+.+.++++++|.++|+.....+.+...++.+++++|++|+||||++.+|+..+...|.+|.+.++|+||.++.+|+..
T Consensus 263 ~~~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~ 342 (503)
T 2yhs_A 263 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV 342 (503)
T ss_dssp BGGGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHH
Confidence 67889999999999999876666667667789999999999999999999999999889999999999999988899888
Q ss_pred hhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc------CCceEEEEEeCc
Q 011624 233 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAM 306 (481)
Q Consensus 233 ~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~------~p~~vvLVvda~ 306 (481)
++...+++++.......+...+.+.+......++|+|||||+|+.+.+..++.++.++..+. .|+.++||+|++
T Consensus 343 ~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 343 WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 87777888887666667777777777776668899999999999988888888888776543 378899999999
Q ss_pred chHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcCCc
Q 011624 307 TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380 (481)
Q Consensus 307 ~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lGlg 380 (481)
++++++.+++.|+..++++|+|+||+|++.++|.+++++..+++||.|+|+|++++||.+|++++|+++++|+.
T Consensus 423 tGq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~ 496 (503)
T 2yhs_A 423 TGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARE 496 (503)
T ss_dssp GTHHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhccc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999983
No 13
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-36 Score=309.88 Aligned_cols=291 Identities=33% Similarity=0.544 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCCh
Q 011624 81 RAEMFGQLTSGLEAAWNKLK-------GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRP 153 (481)
Q Consensus 81 ~~~~~~~l~~~l~~~~~~~~-------~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~ 153 (481)
.++||++|+++|+++.+++. +...+ ++++.+++|+++|+++||+.+++++|+++++++..+.++ .+
T Consensus 53 ~~~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~----~~ 125 (359)
T 2og2_A 53 AKSDVEKVFSGFSKTRENLAVIDELLLFWNLA---ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KS 125 (359)
T ss_dssp --CHHHHHHHHTHHHHHHHTHHHHHHTTCCGG---GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CC
Confidence 35799999999999988875 33333 378899999999999999999999999999998876543 56
Q ss_pred hHHHHHHHHHHHHHHhcCcc--ccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHH
Q 011624 154 DQQLVKIVRDELVKLMGGEV--SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231 (481)
Q Consensus 154 ~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~ 231 (481)
.+++.++++++|.++++... .++.+...++.+++++|++||||||++.+||..+...+.+|.+.++|+||+++.+|+.
T Consensus 126 ~~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~ 205 (359)
T 2og2_A 126 GSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLE 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHH
Confidence 78899999999999998755 4666666678999999999999999999999999988999999999999999999998
Q ss_pred HhhhhcCCCeecCCCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhc------cCCceEEEEEe
Q 011624 232 ILGEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV------LNPTEVLLVVD 304 (481)
Q Consensus 232 ~~~~~~gv~v~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~------~~p~~vvLVvd 304 (481)
.++...+++++..+.. ..|...+.+.+......++|++++||+|+.+.....+.+|.+.... ..|.+++||+|
T Consensus 206 ~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 206 IWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE
T ss_pred HHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 8887788888876666 6787777777765544578999999999988777788877754432 24788899999
Q ss_pred CcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 305 AMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 305 a~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
++++++...+++.|....+++++|+||+|++.++|.++++...++.||.|+|.|++++||++|+|+++++++||
T Consensus 286 pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 286 GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 98899999999999878899999999999999999999999999999999999999999999999999999876
No 14
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=2.7e-37 Score=310.54 Aligned_cols=284 Identities=35% Similarity=0.595 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 011624 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (481)
Q Consensus 83 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 162 (481)
.||++|+++|+++++++.++..+++ ++++.+++|+++|+++||+.+++++|++++++... +++.++++
T Consensus 2 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 69 (304)
T 1rj9_A 2 GFFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVK 69 (304)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 6999999999999999988777888 88889999999999999999999999999987542 45678899
Q ss_pred HHHHHHhcCccc-----cccccC-------CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH
Q 011624 163 DELVKLMGGEVS-----ELVFAK-------SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (481)
Q Consensus 163 ~~L~~~l~~~~~-----~~~~~~-------~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql 230 (481)
++|.++++.... ++.+.. .++.+++++|++||||||++.+||..+...|.+|.+.+.|+||+++.+|+
T Consensus 70 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql 149 (304)
T 1rj9_A 70 EKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQL 149 (304)
T ss_dssp HHHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHH
T ss_pred HHHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHH
Confidence 999999986543 343322 25789999999999999999999999998899999999999999988999
Q ss_pred HHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc------CCceEEEEEe
Q 011624 231 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVD 304 (481)
Q Consensus 231 ~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~------~p~~vvLVvd 304 (481)
..+....+++++.......|...+.+.+......++|++++||+|+.+.+...+.++.+...++ .|+.+++|+|
T Consensus 150 ~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD 229 (304)
T 1rj9_A 150 SEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 (304)
T ss_dssp HHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred HHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 8887777888887666677877666666655446789999999999888778888877654432 4788999999
Q ss_pred CcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 305 AMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 305 a~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
+.+++++.++++.|....+++++|+||.|+..++|.++++...+++||.|+|+||+++|+++|+|+++++++||
T Consensus 230 a~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 230 AVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp TTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999987
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-33 Score=283.14 Aligned_cols=271 Identities=34% Similarity=0.577 Sum_probs=230.6
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHHHHHHHHhcCcc--ccccc
Q 011624 101 GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV--SELVF 178 (481)
Q Consensus 101 ~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~--~~~~~ 178 (481)
+.+.++ +++.+++|+++|+++||+.+++++|++++++...+.++ .+.+++.+++.++|.++++... .++.+
T Consensus 23 ~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~l~~ 95 (302)
T 3b9q_A 23 FWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KSGSEIKDALKESVLEMLAKKNSKTELQL 95 (302)
T ss_dssp TCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CSHHHHHHHHHHHHHHHHCC--CCCSCCC
T ss_pred CCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhCCccccccccc
Confidence 345554 67889999999999999999999999999998876543 4678889999999999998754 45666
Q ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC-CCHHHHHHHH
Q 011624 179 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQG 257 (481)
Q Consensus 179 ~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~-~~~~~~l~~~ 257 (481)
...++.+++++|++||||||++.+||..+...+.+|.+.+.|+||+++.+|+..++...+++++..+.. ..|...+.+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 666789999999999999999999999999889999999999999999999988887778888876655 6777667676
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhcc------CCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~------~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnK 331 (481)
+......++|.+++|++|+.+.....+.++.+....+ .|.+++||+|++++.+...+++.|....+++++|+||
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTK 255 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCEEEEeC
Confidence 6654445689999999999887777777776443322 4788899999988888888888898778999999999
Q ss_pred CCCCCchhHHHHHHHHhCCCeEEeecCCCCCCCCCcChhhHhhhhcC
Q 011624 332 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (481)
Q Consensus 332 vD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl~~f~~~~~~~r~lG 378 (481)
+|++.++|.+++++..++.||.|++.|++++|+++|+|++++++++|
T Consensus 256 lD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 256 LDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp CSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998876
No 16
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=1.1e-32 Score=276.05 Aligned_cols=257 Identities=24% Similarity=0.310 Sum_probs=210.8
Q ss_pred hhhHHHHHHHHHHHHHCCCChHHHHHHHHHHH-HHHhhccccCCCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEE
Q 011624 108 ENIVEPMRDIRRALLEADVSLPVVRRFVQAVS-EQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVI 186 (481)
Q Consensus 108 ~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI 186 (481)
.++++.++++++.|+++||+.+++++|+++++ +..... ..++ +.+.+++.++|.++++... ++.+. .++.++
T Consensus 36 ~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~l~~~~-~~~~~-~~g~vi 108 (296)
T 2px0_A 36 SVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG----GLTE-ENVVGKLQEILCDMLPSAD-KWQEP-IHSKYI 108 (296)
T ss_dssp ---CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS----CCCT-TTHHHHHHHHHHTTSCCGG-GSCCC-CCSSEE
T ss_pred cccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc----CCCH-HHHHHHHHHHHHHHhCCcc-ccccc-CCCcEE
Confidence 35677899999999999999999999999994 444322 3334 5678899999999987543 23222 357899
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcCC
Q 011624 187 LLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (481)
Q Consensus 187 ~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~~ 265 (481)
+++|++|+||||++.+||.+++. +|++|+++++|+||+++.+++..+++..|++++.. ..+.+ ++.++..+ .+
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~--~~ 182 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF--SE 182 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG--GG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh--cC
Confidence 99999999999999999999985 89999999999999999999999998889887643 23433 45556554 68
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH-HHHHHHHhhhcCCeeEEEEcCCCCCCchhHHHHH
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~-~~~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~ 344 (481)
+|+|||||+|+.+.+...+.++.++.....++.+++|+|++.+.. +.+.++.|. .+++.|+|+||+|++.++|.++++
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~ 261 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNI 261 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHH
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHH
Confidence 999999999999888888888877766556788999999977644 444455565 578899999999999999999999
Q ss_pred HHHhCCCeEEeecCCCC-CCCCCcChhhHhhhhcC
Q 011624 345 KEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILG 378 (481)
Q Consensus 345 ~~~~glPV~~ig~g~~v-~dl~~f~~~~~~~r~lG 378 (481)
...+|+||.|++.|+++ +|+.+|+|+++++++||
T Consensus 262 ~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 262 LAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 99999999999999999 99999999999999886
No 17
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.66 E-value=3.2e-15 Score=139.40 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=101.3
Q ss_pred EEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 184 ~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
++|+++ ++||+||||++.+||.+|+++|++|++||+|++..... + ......+++++..+. +.+.+.+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~--~-~~~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN--W-SKAGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH--H-HTTSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH--H-HhcCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 356664 78999999999999999999999999999998865431 1 112334566665532 45667777775
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-chHHHHHHHHHh------hhcCCeeEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTF------NIEIGITGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-~~~~~~~~~~~f------~~~~~i~GvIlnKvD~~ 335 (481)
.+||+|||||||.... .....+ .. .+.+++|+.+. ....+....+.+ ++.+++ |+|+|+++..
T Consensus 74 -~~yD~viiD~~~~~~~--~~~~~l----~~--ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSV--ITSAAV----MV--SDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSH--HHHHHH----HH--CSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCH--HHHHHH----HH--CCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 6799999999998732 111111 11 37788888772 223333333222 233455 9999999965
Q ss_pred Cc-hhHHHHHHHHhCCCe
Q 011624 336 SR-GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~-~g~~~~~~~~~glPV 352 (481)
.. ...+...++.+|.|+
T Consensus 144 ~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp EEEEHHHHHHHHHHTCCB
T ss_pred chHHHHHHHHHHHcCCce
Confidence 43 455667777788888
No 18
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.64 E-value=3.2e-15 Score=149.18 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHH--------------hhh
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGE 235 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~--------------~~~ 235 (481)
.++++|+++|+||+||||++++||.+|+++|++|++||+|++.+.. .+-+.. ...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 3567888889999999999999999999999999999999975321 111110 001
Q ss_pred hcCCCeecCCCCCC-------HHHHHHHHHHHH-HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc
Q 011624 236 QVGVPVYTAGTEVK-------PSQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (481)
Q Consensus 236 ~~gv~v~~~~~~~~-------~~~~l~~~l~~~-~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~ 307 (481)
..|+.+++.+.... ........+... ..++||+|||||||...... +..+. ...+.+++|+.+..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~-----~~~~l--~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-----FAAPL--QHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-----GGGGG--GTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHH-----HHHHH--HHCCEEEEEecCcH
Confidence 23555554332111 111122334431 13689999999998764211 00111 12478888888732
Q ss_pred h--HHHHH---HHHHh--hhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 308 G--QEAAA---LVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 308 ~--~~~~~---~~~~f--~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
. ..+.. .++.+ +..+.+.|+|+||++.. ..+..+.+.+|.|+ ++..+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v--~~~Ip~ 246 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPD 246 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCc--eeeCCc
Confidence 2 23322 33322 23456789999999854 34566777889998 555443
No 19
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.63 E-value=3.5e-15 Score=148.24 Aligned_cols=147 Identities=24% Similarity=0.323 Sum_probs=97.4
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---------hh------------hhcCC
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LG------------EQVGV 239 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---------~~------------~~~gv 239 (481)
++++|+++ +++|+||||++++||..|++.|++|+|||+|+++|.....+.. +. ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 35567665 6699999999999999999999999999999988754332210 00 01244
Q ss_pred CeecCCC-CCCHHHH-----HHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeCc-ch-HH
Q 011624 240 PVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 310 (481)
Q Consensus 240 ~v~~~~~-~~~~~~~-----l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda~-~~-~~ 310 (481)
.+++.+. ..++.+. +.+.++.++ +.||+|||||||.... |... +.. ..+.+++|+.+. +. ..
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~------l~~--~aD~vllVv~~~~~~~~~ 241 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI------VGR--HVGTTLMVARYAVNTLKE 241 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH------HTT--TCSEEEEEEETTTSBHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHHH------HHH--HCCeEEEEEeCCCCcHHH
Confidence 4555443 2345543 466777765 6899999999998754 2221 111 247889999883 33 33
Q ss_pred HHHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 311 AAALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
+...++.+. ...++.|+|+|+++....
T Consensus 242 ~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 242 VETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 333444443 246789999999986544
No 20
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.63 E-value=3.1e-15 Score=146.09 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=100.3
Q ss_pred CEEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhh---------------hhcCCCeecCCC
Q 011624 183 PTVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------EQVGVPVYTAGT 246 (481)
Q Consensus 183 ~~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~---------------~~~gv~v~~~~~ 246 (481)
+++|++ +++||+||||++.+||.+|+++|++|++||+|++.+.....+.... ...|+.+++.+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 345555 5889999999999999999999999999999999876432221100 011233332221
Q ss_pred CC------------CHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc--chHHHH
Q 011624 247 EV------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAA 312 (481)
Q Consensus 247 ~~------------~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~--~~~~~~ 312 (481)
.. ...+.+++.++.+.+++||||||||||..... . ...+. + ...+.+++|+.+. .-..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~-~-~~~~~-~---~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDA-P-LTVMQ-D---AKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSH-H-HHHHH-H---HCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchH-H-HHHHh-h---ccCCeEEEEecCccchHHHHH
Confidence 10 01233444444432368999999999986421 1 11111 1 1237788888773 223333
Q ss_pred HHHHHhh-hcCCeeEEEEcCCCCC-------C---chhHHHHHHHHhCCCeEEeecCC
Q 011624 313 ALVTTFN-IEIGITGAILTKLDGD-------S---RGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 313 ~~~~~f~-~~~~i~GvIlnKvD~~-------~---~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
..++.+. .++++.|+|+|+++.. . ....+..+.+.+|.|+ ++..+
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip 227 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGF--FTSIP 227 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSE--EEECC
T ss_pred HHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCe--EEEee
Confidence 3333222 2467889999999741 1 1223566777889887 55443
No 21
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.63 E-value=7.2e-15 Score=144.84 Aligned_cols=146 Identities=23% Similarity=0.340 Sum_probs=96.1
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---------hh------------hhcCC
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LG------------EQVGV 239 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---------~~------------~~~gv 239 (481)
++++|+++ +++|+||||++++||..|++.|+||++||+|+++|.....+.. +. ...++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 45677776 4599999999999999999999999999999988664322110 00 01345
Q ss_pred CeecCCC-CCCHHHH-----HHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeC-cch-HH
Q 011624 240 PVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QE 310 (481)
Q Consensus 240 ~v~~~~~-~~~~~~~-----l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda-~~~-~~ 310 (481)
.+++.+. ..++.++ +.+.++.++ +.||+|||||||.... +...+... .+.+++|+.+ .+. ..
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~~--------aD~vilVv~~~~~~~~~ 231 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSKF--------TGNVVYVVNSENNNKDE 231 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHHHH--------HCEEEEEEETTSCCHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHHHH--------CCEEEEEEeCCCCcHHH
Confidence 5665543 3345443 356677765 6899999999997653 32222221 2788999988 333 33
Q ss_pred HHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 311 AAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
+....+.+. ...++.|+|+|+++...
T Consensus 232 ~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 232 VKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 333333332 24567999999998654
No 22
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.62 E-value=3.4e-15 Score=143.18 Aligned_cols=165 Identities=18% Similarity=0.147 Sum_probs=104.0
Q ss_pred CCEEEEE-EcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhH-------------HHHHHHh-------------
Q 011624 182 RPTVILL-AGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAA-------------IDQLVIL------------- 233 (481)
Q Consensus 182 ~~~VI~i-~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~a-------------idql~~~------------- 233 (481)
++++|++ +++||+||||++++||.+|+++ |++|++||+|++.+.. .+.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 3566666 4779999999999999999998 9999999999984322 1111100
Q ss_pred hhhcCCCeecCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-
Q 011624 234 GEQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 307 (481)
Q Consensus 234 ~~~~gv~v~~~~~~~~~-----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~- 307 (481)
....|+.+++.+..... .+.+.+.++.++ ..||+|||||||...... .. +.. ..+.+++|+.+..
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~---~~---~l~--~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG---VW---VLE--HLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH---HH---HGG--GCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH---HH---HHH--HCCEEEEEecCcHH
Confidence 01235556655432111 234566777765 589999999998764321 11 111 2377888888732
Q ss_pred h-HHHHH---HHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecC
Q 011624 308 G-QEAAA---LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 358 (481)
Q Consensus 308 ~-~~~~~---~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g 358 (481)
. ..+.. .++.+.......|+|+|+++...... ...+.+.+|.|+ ++..
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v--~~~i 205 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPI--SKRI 205 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCE--EEEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCe--EEEC
Confidence 2 22223 33333333566899999998655432 245667789998 5554
No 23
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.61 E-value=6.9e-15 Score=142.98 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=102.5
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-------------HHHHHh--------hhhcCCCe
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVIL--------GEQVGVPV 241 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-------------dql~~~--------~~~~gv~v 241 (481)
++|++ +++||+||||++++||.+|+++|++|++||+|++.+... +.+... ....++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 45555 688999999999999999999999999999999754321 111000 00123444
Q ss_pred ecCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHH
Q 011624 242 YTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 314 (481)
Q Consensus 242 ~~~~~~~~~-----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~ 314 (481)
++.....+. .+.+.+.++.++ .+||+|||||||.... .... +.. ..+.+++|+.+... ..+...
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~--~~~~----~~~--~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLER--SAVI----AIA--AAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSH--HHHH----HHH--HSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCCh--HHHH----HHH--HCCEEEEEeCCChhHHHHHHHH
Confidence 442211111 234456666665 6899999999987642 1111 111 13788888887422 233333
Q ss_pred HHHhhh-cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 315 VTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 315 ~~~f~~-~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
++.+.. ...+.|+|+|+++.......+..+.+.+|.|+ ++..+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip 197 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV--IGLIP 197 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE--EEEEE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe--EEECC
Confidence 333221 35678999999997655544566777788887 45443
No 24
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.60 E-value=9.8e-15 Score=145.90 Aligned_cols=147 Identities=28% Similarity=0.372 Sum_probs=97.0
Q ss_pred CCEEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---------h------------hhhcCC
Q 011624 182 RPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQVGV 239 (481)
Q Consensus 182 ~~~VI~i~G-~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---------~------------~~~~gv 239 (481)
++++|++++ ++|+||||++++||..|++.|+||++||+|+.+|.....+.. + ....++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 456777765 599999999999999999999999999999987654322110 0 011355
Q ss_pred CeecCCC-CCCHHH-----HHHHHHHHHHcCCCcEEEEcCCCCccc-cHHHHHHHHhhhhccCCceEEEEEeCc-ch-HH
Q 011624 240 PVYTAGT-EVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 310 (481)
Q Consensus 240 ~v~~~~~-~~~~~~-----~l~~~l~~~~~~~~D~VIIDt~G~~~~-d~~~~~el~~i~~~~~p~~vvLVvda~-~~-~~ 310 (481)
.+++.+. ..++.+ .+.+.++.++ +.||+|||||||.... |... +.. ..+.+++|+.+. +. ..
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~------l~~--~ad~vilV~~~~~~~~~~ 253 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV------VGR--SVGTSLLVARFGLNTAKE 253 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH------HGG--GCSEEEEEEETTTSCTTH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH------HHH--HCCEEEEEEcCCCChHHH
Confidence 5665543 334443 3456777765 6899999999998753 2221 111 237889998872 22 33
Q ss_pred HHHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 311 AAALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 311 ~~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
+...++.+. ...++.|+|+|+++....
T Consensus 254 ~~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 254 VSLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 333334332 246789999999997644
No 25
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.60 E-value=2.3e-14 Score=139.70 Aligned_cols=170 Identities=17% Similarity=0.184 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHH------------HHHHh-----------hhhcCCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID------------QLVIL-----------GEQVGVP 240 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aid------------ql~~~-----------~~~~gv~ 240 (481)
++|+++|+||+||||++.+||.+|+++|++|++||+|++.+.... .+... ....|+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 467778999999999999999999999999999999998644211 11110 0113455
Q ss_pred eecCCCCCC-----HHHHH--HHHHHHHH--cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-H
Q 011624 241 VYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-Q 309 (481)
Q Consensus 241 v~~~~~~~~-----~~~~l--~~~l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~ 309 (481)
+++.+.... ..+.. ...+..+. .++||||||||||....+ .+...+.. ...+.+++|+.+.. . .
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~-~~~~~~~~----~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCG-GFAMPIRE----GKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCST-TTTHHHHT----TSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhh-hhhhhhhH----hhCCEEEEeecCchhhHH
Confidence 555443211 11111 11222221 257999999999875422 11111110 12478888888732 2 2
Q ss_pred HH---HHHHHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 310 EA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 310 ~~---~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
.+ ...+..+.. ++++.|+|+|+++...+......+.+.+|.|+ ++..+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v--~~~Ip~ 210 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL--IHFVPR 210 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE--EEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcc--cccCCC
Confidence 22 233333322 45578999999986554445566777889998 454433
No 26
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.59 E-value=6.6e-15 Score=143.71 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=100.0
Q ss_pred CCCEEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhh----------------h--------
Q 011624 181 SRPTVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG----------------E-------- 235 (481)
Q Consensus 181 ~~~~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~----------------~-------- 235 (481)
.++++|++ +++||+||||++++||.+|+ +|++|++||+|++.+....-..... .
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 35677777 57799999999999999999 9999999999998754321110000 0
Q ss_pred ---hcCCCeecCCCCC---------CHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEE
Q 011624 236 ---QVGVPVYTAGTEV---------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (481)
Q Consensus 236 ---~~gv~v~~~~~~~---------~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVv 303 (481)
..|+.+++.+... .....+.+.++.++ ..||+||||||+.... ..... +. ..+.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~~~----l~--~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLKNA----LL--CSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHHHH----HT--TCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHHHH----HH--HCCeEEEEe
Confidence 0233344332110 01345566676663 7899999999987642 11111 11 247888888
Q ss_pred eC-cchH-HHH---HHHHHhhhcCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCCCCC
Q 011624 304 DA-MTGQ-EAA---ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDL 364 (481)
Q Consensus 304 da-~~~~-~~~---~~~~~f~~~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v~dl 364 (481)
.+ ..+. .+. +.++.+....++ ++|+|+++.......+...... +.|+ ++..+..+.+
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~~~~~l~~-~~~~--~~~Ip~~~~~ 236 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKTLFEILKT-KDRF--LGTISEREDL 236 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCHHHHHHTT-STTE--EEEEEC----
T ss_pred CCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHHHHHHHhc-Cccc--ceecCcHHHH
Confidence 87 3332 222 223333333444 6999999655555555444443 6776 6666555443
No 27
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.58 E-value=9.2e-15 Score=144.97 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=93.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhh-----------------------hcCCCeecCCC
Q 011624 190 GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----------------------QVGVPVYTAGT 246 (481)
Q Consensus 190 G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~-----------------------~~gv~v~~~~~ 246 (481)
++||+||||++.+||.+|+++|++|++||+|++.+........++. ..|+.+++.+.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~vlp~~~ 123 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTF 123 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSSSEEEECCCG
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCCCeEEEeCCc
Confidence 6999999999999999999999999999999997643111000000 02334444332
Q ss_pred CCCH-------------HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HH-
Q 011624 247 EVKP-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE- 310 (481)
Q Consensus 247 ~~~~-------------~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~- 310 (481)
.... ...+++.++.++ ++||+|||||||.... .....+ . ..+.+++|+.+.. . ..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~~~~~l---~---~aD~viiv~~~~~~s~~~~ 194 (298)
T 2oze_A 124 DLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSV--YTNNAI---V---ASDYVMIPLQAEEESTNNI 194 (298)
T ss_dssp GGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSH--HHHHHH---H---HCSEEEEEECGGGCCHHHH
T ss_pred hHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccH--HHHHHH---H---HCCeEEEEecCcHHHHHHH
Confidence 1111 122455555553 6899999999998642 112222 1 1378888887732 2 22
Q ss_pred --HHHHHH----HhhhcCCeeEEEEcCCCCCCc--hhHHHHHHHHhCC
Q 011624 311 --AAALVT----TFNIEIGITGAILTKLDGDSR--GGAALSVKEVSGK 350 (481)
Q Consensus 311 --~~~~~~----~f~~~~~i~GvIlnKvD~~~~--~g~~~~~~~~~gl 350 (481)
..+.+. .++..+++.|+|+|++|.... ...+..+.+.++.
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 195 QNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 222222 234567789999999997653 2344556666665
No 28
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.58 E-value=9.8e-15 Score=139.45 Aligned_cols=165 Identities=21% Similarity=0.292 Sum_probs=100.6
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------------HHHHHHhh---h------hcCCC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILG---E------QVGVP 240 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------------idql~~~~---~------~~gv~ 240 (481)
++|++ +++||+||||++.+||.+|+++|++|++||+|++.+.. .+.+.... + ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 45555 57799999999999999999999999999999975332 11110000 0 02333
Q ss_pred eecCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHH
Q 011624 241 VYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA 313 (481)
Q Consensus 241 v~~~~~~~~~-----~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~ 313 (481)
+++....... .+.+.+.++.++ .+||+|||||||....+ . . .+.. ..+.+++|+.+... ..+..
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~-~---~~~~--~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD--A-M---SAML--SGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH--H-H---HHHT--TCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH--H-H---HHHH--HCCeEEEEecCCcccHHHHHH
Confidence 4432111111 123445566654 68999999999876421 1 1 1222 24788888887432 23333
Q ss_pred HHHHhhh-cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCC
Q 011624 314 LVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 314 ~~~~f~~-~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~ 359 (481)
.++.+.. ...+.|+|+|+++.......+..+.+.+|.|+ ++..+
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip 198 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL--LAVIP 198 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE--EEEEE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc--eeeCC
Confidence 3333322 35678999999997654444556667788887 45443
No 29
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.58 E-value=1.3e-14 Score=143.38 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=100.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHH------------HHHHh-------------hhhcC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID------------QLVIL-------------GEQVG 238 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aid------------ql~~~-------------~~~~g 238 (481)
++|+++|+||+||||++.+||.+|+++|++|++||+|++.+.... -+... ....|
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 577778999999999999999999999999999999998643211 11100 00123
Q ss_pred CCeecCCCCCC-----HHHHH--HHHHHHHH--cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h
Q 011624 239 VPVYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 308 (481)
Q Consensus 239 v~v~~~~~~~~-----~~~~l--~~~l~~~~--~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~ 308 (481)
+.+++.+.... ..+.. .+.+..+. ..+||||||||||....+. +...+. ....+.+++|+.+.. .
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~~~----~~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMPIR----ENKAQEIYIVCSGEMMA 157 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHHHH----TTCCCEEEEEECSSHHH
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhhhh----hhhCCEEEEEecCCHHH
Confidence 44444332111 11111 12233321 2579999999998754221 111111 112477888887732 2
Q ss_pred -HHH---HHHHHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCC
Q 011624 309 -QEA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 309 -~~~---~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~ 360 (481)
..+ .+.++.+.. .+++.|+|+|+++...+...+..+.+.+|.|+ ++..+.
T Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~--l~~Ip~ 213 (289)
T 2afh_E 158 MYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQM--IHFVPR 213 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCE--EEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCccc--cccCCC
Confidence 222 233333322 45578999999975444444456667789988 455443
No 30
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.57 E-value=3e-14 Score=143.32 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=101.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-----------HHHHHHh--------------hhh
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVIL--------------GEQ 236 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-----------idql~~~--------------~~~ 236 (481)
+.+||+++||||||||||+.|||.+|+++|+||++||+|++-+.. .+..... ...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 126 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 126 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeecC
Confidence 568999999999999999999999999999999999999874321 1111100 001
Q ss_pred cCCCeecCCCCC-----CHHHHHHHHHHHH----HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-
Q 011624 237 VGVPVYTAGTEV-----KPSQIAKQGLEEA----KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM- 306 (481)
Q Consensus 237 ~gv~v~~~~~~~-----~~~~~l~~~l~~~----~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~- 306 (481)
.|+.+...+... .... ....+..+ ..+.||++++|+++..... .+. ......+.+++|+.+.
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~-~~~------~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYV-VGQTVKLLKQHHLLDDTDVVIFDVLGDVVCG-GFA------APLQHADQAVVVTANDF 198 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHH-HHHHHHHHHHTTTTSSCSEEEEEECCSSCCG-GGG------GGGGTCSEEEEEECSSH
T ss_pred CCeEEEeCCCCcccchhhhcc-HHHHHHHHHhcchhhcCceEeeccCCcchhh-hhH------hHHhhCCeEEEEeCCcH
Confidence 133444333211 1111 11122221 2367999999999775321 110 0112247888888873
Q ss_pred ch-H---HHHHHHHHhhh--cCCeeEEEEcCCCCCCchhHHHHHHHHhCCCeEEeecCCCC
Q 011624 307 TG-Q---EAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 361 (481)
Q Consensus 307 ~~-~---~~~~~~~~f~~--~~~i~GvIlnKvD~~~~~g~~~~~~~~~glPV~~ig~g~~v 361 (481)
.. + .+...++.+.. +.++.|+|+|+.+.. ..+..+++.++.++ ++..+..
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~---~~v~~~a~~~~~~~--lg~IP~d 254 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPDL 254 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch---hHHHHHHHHhCCeE--EEEecCc
Confidence 22 2 23334444543 345789999987653 34566778889998 6665544
No 31
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.56 E-value=3.2e-14 Score=137.63 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=101.8
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHH--------------H------H-h---hhhcC
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL--------------V------I-L---GEQVG 238 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql--------------~------~-~---~~~~g 238 (481)
++|++ +++||+||||++.+||.+|+++|++|++||+|++.+.....+ . . . ....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 46666 577999999999999999999999999999999644321111 0 0 0 01124
Q ss_pred CCeecCCCC----CCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-HHHH
Q 011624 239 VPVYTAGTE----VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAA 312 (481)
Q Consensus 239 v~v~~~~~~----~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~~ 312 (481)
+.+++.+.. ....+.+.+.++.++...||+||||||+.... ..... .. ..+.+++|+.+.. . ..+.
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~--~~~~~----l~--~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMA----LY--FADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH--HHHHH----HH--TCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH--HHHHH----HH--hCCEEEEEecCChhHHHHHH
Confidence 445543321 11234566777777522899999999987642 11111 11 2478889988732 2 2333
Q ss_pred HHHHHhhh---------cCCeeEEEEcCCCCCCc--hh--HHHHHHHHhCCCeEEeecCCC
Q 011624 313 ALVTTFNI---------EIGITGAILTKLDGDSR--GG--AALSVKEVSGKPIKLVGRGER 360 (481)
Q Consensus 313 ~~~~~f~~---------~~~i~GvIlnKvD~~~~--~g--~~~~~~~~~glPV~~ig~g~~ 360 (481)
..+..+.. .....|+|+|+++.... .. .+..+.+.+|.|+ ++..+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 213 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE 213 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEE--EEEEEC
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCce--EEecCC
Confidence 33333321 11467999999985432 11 1256677789988 555543
No 32
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.56 E-value=1.3e-14 Score=139.12 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=92.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHH--------------------HHHhh-----------
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ--------------------LVILG----------- 234 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidq--------------------l~~~~----------- 234 (481)
|+++|+||+||||++.+||.+|+++|+||++||+|++ +..... +....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 4459999999999999999999999999999999996 332111 10000
Q ss_pred ----------hhcCCCe-ecCCC------CC-CHH-HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccC
Q 011624 235 ----------EQVGVPV-YTAGT------EV-KPS-QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 295 (481)
Q Consensus 235 ----------~~~gv~v-~~~~~------~~-~~~-~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~ 295 (481)
...++.+ +..+. .. .+. ..+++.++.+...+||+|||||||...... ...+ ..
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--~~~l------~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--RGTA------KA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--HHHH------TT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--HHHH------HH
Confidence 0011222 22111 11 122 457788888723799999999998765321 1111 12
Q ss_pred CceEEEEEeCc-chHHHHHHHHHhhhc--CCeeEEEEcCCCCCCchhHHHHHHHHhC-CCe
Q 011624 296 PTEVLLVVDAM-TGQEAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEVSG-KPI 352 (481)
Q Consensus 296 p~~vvLVvda~-~~~~~~~~~~~f~~~--~~i~GvIlnKvD~~~~~g~~~~~~~~~g-lPV 352 (481)
.+.+++|+.+. .....+..+..+... ....++|+||++... ....+.+.++ .++
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~---~~~~~~~~~~~~~~ 211 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIK---EEKLIKKHLPEDKI 211 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHH---HHHHHHHHSCGGGE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChh---HHHHHHHHhcCCcc
Confidence 37888888873 222333333223222 345789999998432 2344555665 555
No 33
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.53 E-value=1.6e-13 Score=129.70 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=89.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
|.+.+++||+||||++.+||.+|+++| +|++||+|++.... ..+.. . ....++++. + .++.+. .
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~-~l~~~vi~~-------~----~l~~l~-~ 66 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-G-SLPFKVVDE-------R----QAAKYA-P 66 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-S-CCSSEEEEG-------G----GHHHHG-G
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-C-CCCcceeCH-------H----HHHHhh-h
Confidence 444568899999999999999999999 99999999997443 22211 1 111112211 1 345553 7
Q ss_pred CCcEEEEcCCCC-ccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhh--cCCeeEEEEcCCCCCC-c-
Q 011624 265 NVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGDS-R- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~-~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~--~~~i~GvIlnKvD~~~-~- 337 (481)
.||+|||||||. .... ... +.. ..+.+++|+.+... ..+...++.+.. ..+ .++|+|+++... .
T Consensus 67 ~yD~viiD~p~~~~~~~--~~~----~l~--~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~ 137 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED--LEA----LAD--GCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKD 137 (209)
T ss_dssp GCSEEEEEEECCCSSSH--HHH----HHH--TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCH
T ss_pred cCCEEEEeCCCCcCcHH--HHH----HHH--HCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchH
Confidence 899999999987 4321 111 111 23778888877432 233333333332 344 689999999765 3
Q ss_pred hhHHHHHHHHhCCCe
Q 011624 338 GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ~g~~~~~~~~~glPV 352 (481)
...+...++.+|.|+
T Consensus 138 ~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 138 GDEARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHcCCch
Confidence 344555566678887
No 34
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.52 E-value=4.9e-13 Score=126.59 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=97.9
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch---------hHHHHHHHhhhhc------CCCeecCCCC-
Q 011624 185 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---------AAIDQLVILGEQV------GVPVYTAGTE- 247 (481)
Q Consensus 185 VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp---------~aidql~~~~~~~------gv~v~~~~~~- 247 (481)
+|++ ++++|+||||++.+||.+|+++|+||+++|...... ...+.+..+.... ....+.....
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSP 82 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSCSCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCCCCH
Confidence 4555 567999999999999999999999999986321111 1111121111100 0001110100
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCcEEEEcCCCCcccc---HHHHHHHHhhhhccCCceEEEEEeCcc-h-HHHHH
Q 011624 248 ---------VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAA 313 (481)
Q Consensus 248 ---------~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d---~~~~~el~~i~~~~~p~~vvLVvda~~-~-~~~~~ 313 (481)
....+.+.+.++.+. ++||+|||||||..... ......+..... .++++|+.+.. + .++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~----~~vi~v~~~~~~~~~~~~~ 157 (224)
T 1byi_A 83 HIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQ----LPVILVVGVKLGCINHAML 157 (224)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHT----CCEEEEEECSTTHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhC----CCEEEEecCCCCcHHHHHH
Confidence 012344566777764 68999999999876421 112222222222 46888888732 2 33333
Q ss_pred HHHHh-hhcCCeeEEEEcCCCCCCc--hhHHHHHHHHhCCCeEEeecCCCCC
Q 011624 314 LVTTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERME 362 (481)
Q Consensus 314 ~~~~f-~~~~~i~GvIlnKvD~~~~--~g~~~~~~~~~glPV~~ig~g~~v~ 362 (481)
.++.+ +.++++.|+|+|+++.... ......+.+.++.|+ ++..+...
T Consensus 158 ~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v--l~~Ip~~~ 207 (224)
T 1byi_A 158 TAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL--LGEIPWLA 207 (224)
T ss_dssp HHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE--EEEECCCT
T ss_pred HHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE--EEECCCCc
Confidence 33333 4467889999999986532 233345556689998 56555544
No 35
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.51 E-value=5e-14 Score=137.03 Aligned_cols=162 Identities=26% Similarity=0.337 Sum_probs=94.6
Q ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHH---------hhh---------hcCCCee
Q 011624 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LGE---------QVGVPVY 242 (481)
Q Consensus 182 ~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~---------~~~---------~~gv~v~ 242 (481)
++++|+++ ++||+||||++.+||.+|+++|++|++||+|++.+.. ..+.. +.. ..++.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 34567665 7899999999999999999999999999999985322 11100 000 1234455
Q ss_pred cCCCCCCHH--HHHH--HHHHHHHc-CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc-h-H---HHH
Q 011624 243 TAGTEVKPS--QIAK--QGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-Q---EAA 312 (481)
Q Consensus 243 ~~~~~~~~~--~~l~--~~l~~~~~-~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~-~-~---~~~ 312 (481)
+.+...... +... ..+..+.. .+||+|||||||.... .....+ . ..+.+++|+.+.. . . ...
T Consensus 84 p~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~--~~~~~l----~--~aD~viiv~~~~~~s~~~~~~~~ 155 (257)
T 1wcv_1 84 PATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSP--LTLNAL----A--AAEGVVVPVQAEYYALEGVAGLL 155 (257)
T ss_dssp CCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCH--HHHHHH----H--HCSEEEEEEESSTHHHHHHHHHH
T ss_pred eCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCH--HHHHHH----H--HCCeEEEEecCchHHHHHHHHHH
Confidence 443221111 0000 12222211 5799999999998642 111111 1 1378899988743 2 1 222
Q ss_pred HHHHH----hhhcCCeeEEEEcCCCCCCch-hHH-HHHHHHhCCCe
Q 011624 313 ALVTT----FNIEIGITGAILTKLDGDSRG-GAA-LSVKEVSGKPI 352 (481)
Q Consensus 313 ~~~~~----f~~~~~i~GvIlnKvD~~~~~-g~~-~~~~~~~glPV 352 (481)
+.++. ++..+++.|+|+|+++..... ... ..+.+.+|.|+
T Consensus 156 ~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 156 ATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 33332 234566789999999875432 233 34455567776
No 36
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.50 E-value=2.5e-13 Score=134.38 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=96.8
Q ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhh---h------hcCC-CeecCCC--CCC
Q 011624 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---E------QVGV-PVYTAGT--EVK 249 (481)
Q Consensus 183 ~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~---~------~~gv-~v~~~~~--~~~ 249 (481)
+++|+++ ++||+||||++.+||.+|+++|++|++||+|+..+.....+.... + ..++ ++++... ...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 83 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE 83 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence 4566664 789999999999999999999999999999994444333221111 0 1122 3332210 000
Q ss_pred -----HHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-H-------HH-----
Q 011624 250 -----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-------EA----- 311 (481)
Q Consensus 250 -----~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-~-------~~----- 311 (481)
..+.+.+.++.++ .+||+|||||||.... .... +.. ..+.+++|+.+... . +.
T Consensus 84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~--~~~~----~l~--~aD~viiv~~~~~~~~~~~~~~~~~~~~~~ 154 (286)
T 2xj4_A 84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSA--ITRM----AHG--RADLVVTPMNDSFVDFDMLGTVDPVTLELT 154 (286)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCH--HHHH----HHH--TCSEEEEEEESSHHHHTTTEEECTTTCCEE
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccH--HHHH----HHH--HCCEEEEEEcCCccHHHHHHHHHHHhhhcc
Confidence 0124556677764 6899999999998632 1111 111 23788888876321 1 11
Q ss_pred --------H---HHHHHh--hhc-CCeeEEEEcCCCCCC--chhHHHHHHHH----hCCCeEEeecCCCC
Q 011624 312 --------A---ALVTTF--NIE-IGITGAILTKLDGDS--RGGAALSVKEV----SGKPIKLVGRGERM 361 (481)
Q Consensus 312 --------~---~~~~~f--~~~-~~i~GvIlnKvD~~~--~~g~~~~~~~~----~glPV~~ig~g~~v 361 (481)
+ +.++.+ +.. .. .++|+|+++... ....+...... +|.+ +.+..+..
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~Ip~~ 221 (286)
T 2xj4_A 155 KPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATTEARNRKRLEDRLNALAKRVGFR--IGPGLRDR 221 (286)
T ss_dssp EECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCCE--EEECCCCC
T ss_pred ccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCCCcchhHHHHHHHHHHHHHcCCc--cCCCCCch
Confidence 2 222333 333 33 469999999765 33333333333 7763 36655443
No 37
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.49 E-value=4.7e-13 Score=136.54 Aligned_cols=41 Identities=37% Similarity=0.535 Sum_probs=37.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++|++++|+||+||||++++||.+|+++|+||++||+|+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45677788999999999999999999999999999999994
No 38
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.44 E-value=3.2e-12 Score=129.24 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=38.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..++++++|+||+||||++++||.+|+++|+||++||+|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35678889999999999999999999999999999999987
No 39
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.43 E-value=6.7e-13 Score=135.92 Aligned_cols=42 Identities=38% Similarity=0.479 Sum_probs=37.2
Q ss_pred EEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 184 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 184 ~VI~i-~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
++|++ +++|||||||++++||.+|+++|+||++||+|++.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 35555 5889999999999999999999999999999998754
No 40
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.42 E-value=2.5e-12 Score=125.28 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=105.5
Q ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch-------hHHHHHHHhhhhcCCCe----ecCCCCC--
Q 011624 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQLVILGEQVGVPV----YTAGTEV-- 248 (481)
Q Consensus 183 ~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp-------~aidql~~~~~~~gv~v----~~~~~~~-- 248 (481)
.+.++++|. +|+||||+++.|+++|+++|++|. +||| +..|. ..+....|++. +......
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~-----~fKPv~~g~~~~~~D~-~~~~~~~g~~~~~~~~~~~~p~sP 99 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVA-----VCKPVQTGTARGDDDL-AEVGRLAGVTQLAGLARYPQPMAP 99 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE-----EEEEEECCGGGTCCHH-HHHHHHHCCCEEEEEEECSSSSCH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE-----EEeeeecCCCCCCHHH-HHHHHHcCCCCCCCCeeECCCCCh
Confidence 457777777 899999999999999999999999 4552 11222 23333344431 1111111
Q ss_pred -----------CHHHHHHHHHHHHHcCCCcEEEEcCCCCccc---cH-HHHHHHHhhhhccCCceEEEEEeCcch--HHH
Q 011624 249 -----------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DK-AMMDELKDVKRVLNPTEVLLVVDAMTG--QEA 311 (481)
Q Consensus 249 -----------~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~-~~~~el~~i~~~~~p~~vvLVvda~~~--~~~ 311 (481)
...+.+.+.++++ ..+||++|||++|.+.. +. .+..++++.+. .+++||+++..+ ..+
T Consensus 100 ~~aa~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~----~pVILV~~~~~g~i~~~ 174 (251)
T 3fgn_A 100 AAAAEHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVA----AAALVVVTADLGTLNHT 174 (251)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTT----CEEEEEECSSTTHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHHHHHHHcC----CCEEEEEcCCCccHHHH
Confidence 1123345556655 37899999999987632 22 35566665555 899999999533 222
Q ss_pred HHHHHHh-hhcCCeeEEEEcCCCCCC--chhHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 312 AALVTTF-NIEIGITGAILTKLDGDS--RGGAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 312 ~~~~~~f-~~~~~i~GvIlnKvD~~~--~~g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
...+..+ ..++++.|+|+||+.+.. ........++.. +|| +|..|+.++
T Consensus 175 ~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpv--LG~iP~~~~ 226 (251)
T 3fgn_A 175 KLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMV--RAALPAGAA 226 (251)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCE--EEEEETTGG
T ss_pred HHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCE--EEEeeCCCC
Confidence 2222222 457889999999996432 223344555556 999 888887754
No 41
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=99.42 E-value=2.3e-14 Score=122.83 Aligned_cols=79 Identities=20% Similarity=0.445 Sum_probs=67.1
Q ss_pred HhhhcccccHHHHHHHHhhhhccCCccccccCCC-CCCC-ccccccchhhhcchhHHHHHHccChhhhccCCcccccccC
Q 011624 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFK 480 (481)
Q Consensus 403 ~k~~~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p-~~~~-~~~~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~ 480 (481)
+++.+++|||+||++|++++.+||+++.+++|+| |++. ++......++..|+++++||+|||++|+.+|.||++||++
T Consensus 3 ~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii~~SR~~ 82 (119)
T 2jqe_A 3 GTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKIIDSSRIR 82 (119)
T ss_dssp --CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGCCHHHHH
T ss_pred hHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhcCHHHHH
Confidence 4677889999999999999999999999999999 9865 4322223346778999999999999999999999999987
Q ss_pred C
Q 011624 481 R 481 (481)
Q Consensus 481 ~ 481 (481)
|
T Consensus 83 R 83 (119)
T 2jqe_A 83 R 83 (119)
T ss_dssp H
T ss_pred H
Confidence 6
No 42
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.41 E-value=2.1e-12 Score=130.24 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=37.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+|++++|+||+||||++++||.+++++|+||++||+|+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4677888999999999999999999999999999999993
No 43
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.40 E-value=3.4e-12 Score=129.40 Aligned_cols=42 Identities=38% Similarity=0.438 Sum_probs=38.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+++++++|+||+||||++++||.+|+++|++|++||+|+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 457888899999999999999999999999999999999753
No 44
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.39 E-value=2e-12 Score=132.02 Aligned_cols=145 Identities=18% Similarity=0.216 Sum_probs=86.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH---H----HHHHhhhhcCCCeecCCCCCCH---H
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI---D----QLVILGEQVGVPVYTAGTEVKP---S 251 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai---d----ql~~~~~~~gv~v~~~~~~~~~---~ 251 (481)
++.+|+++|++|+||||++.+|+..+...|++|+++++|+..+... . .+..+....++.+......... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4678999999999999999999999999999999999998765411 1 1112222234444444332221 2
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcC
Q 011624 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331 (481)
Q Consensus 252 ~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnK 331 (481)
...++.+..+...++|++||||||...... .+ . -..+.+++|+|+..+........... .. ...+|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~----~~---~--~~aD~vl~V~d~~~~~~~~~l~~~~~-~~-p~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV----AV---A--NMVDTFVLLTLARTGDQLQGIKKGVL-EL-ADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH----HH---H--TTCSEEEEEEESSTTCTTTTCCTTSG-GG-CSEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH----HH---H--HhCCEEEEEECCCCCccHHHHHHhHh-hc-CCEEEEEC
Confidence 233455555555789999999999654211 11 1 23478899999865432211111111 11 35689999
Q ss_pred CCCCCc
Q 011624 332 LDGDSR 337 (481)
Q Consensus 332 vD~~~~ 337 (481)
+|....
T Consensus 227 ~Dl~~~ 232 (355)
T 3p32_A 227 ADGEHH 232 (355)
T ss_dssp CCGGGH
T ss_pred CCCcCh
Confidence 997543
No 45
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.39 E-value=1.1e-12 Score=136.11 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=86.7
Q ss_pred CCCCEEEEEE-cCCCCCHHHHHHHHHHHHH------HcCCeEEEEeccCCchhH----------------HHHHHH----
Q 011624 180 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAA----------------IDQLVI---- 232 (481)
Q Consensus 180 ~~~~~VI~i~-G~~GvGKTTta~~LA~~L~------~~G~kVlLId~D~~rp~a----------------idql~~---- 232 (481)
..++++|+++ |+||+||||++++||.+|+ ++|++|++||+|++.... .+.+..
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----------CCHHHHHHHTCCH
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 3456777775 8899999999999999999 689999999999875211 001100
Q ss_pred ---h------hhhcCCCeecCCCCCC-----HHH--------------HHHHHHHHHHcCCCcEEEEcCCCCccccHHHH
Q 011624 233 ---L------GEQVGVPVYTAGTEVK-----PSQ--------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 284 (481)
Q Consensus 233 ---~------~~~~gv~v~~~~~~~~-----~~~--------------~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~ 284 (481)
. ....|+.+++.+.... ..+ ..+..++.+ .++||+|||||||.... ...
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~yD~VIID~pP~~~~--~~~ 264 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRV-ADDYDFIFIDTGPHLDP--FLL 264 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGS-GGGCSEEEEEECSSCSH--HHH
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHH-hhcCCEEEEECCCCccH--HHH
Confidence 0 0113455555443210 001 112334444 36899999999998742 222
Q ss_pred HHHHhhhhccCCceEEEEEeCcch------------HHHHHHHHHhhhcCCeeEE--EEcCCCCCCchhHH-HHHHHHhC
Q 011624 285 DELKDVKRVLNPTEVLLVVDAMTG------------QEAAALVTTFNIEIGITGA--ILTKLDGDSRGGAA-LSVKEVSG 349 (481)
Q Consensus 285 ~el~~i~~~~~p~~vvLVvda~~~------------~~~~~~~~~f~~~~~i~Gv--IlnKvD~~~~~g~~-~~~~~~~g 349 (481)
..+ . ..+.+++|+.+... ....+.++.+....++.|+ ++|+.+........ ..+.+.+|
T Consensus 265 ~al---~---~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 265 NGL---A---ASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYA 338 (403)
T ss_dssp HHH---H---HCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHH---H---HCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCchhHHHHHHHHHHHhh
Confidence 222 1 13778888876321 1122233444445666665 57888743323333 44556789
Q ss_pred CCeEEe-ecCCCCC
Q 011624 350 KPIKLV-GRGERME 362 (481)
Q Consensus 350 lPV~~i-g~g~~v~ 362 (481)
.++ + +..|...
T Consensus 339 ~~v--l~~~IP~~~ 350 (403)
T 3ez9_A 339 SNI--LDSSLPRLD 350 (403)
T ss_dssp TSE--ECCC-----
T ss_pred Hhh--hceeCCchH
Confidence 888 4 4444433
No 46
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.38 E-value=3e-12 Score=122.98 Aligned_cols=161 Identities=20% Similarity=0.281 Sum_probs=101.2
Q ss_pred EEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch---h--H-------HHHHHHhhhhcCCCe-------ec
Q 011624 184 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---A--A-------IDQLVILGEQVGVPV-------YT 243 (481)
Q Consensus 184 ~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp---~--a-------idql~~~~~~~gv~v-------~~ 243 (481)
+.++++|. +|+||||++++|+.+|+++|++|.+ ||| + . .|.+ . ...+++. +.
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~-----~KPv~~g~~~~~~~~~~~D~~-~--~~~~~~~~~~~~~~~~ 76 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC-----LKPVASGQSQFSELCEDVESI-L--NAYKHKFTAAEINLIS 76 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE-----ECSEEESBCSSSSSBHHHHHH-H--HHTTTSSCHHHHCSEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE-----ecceeecCccCCCCCChHHHH-H--HhcCCCCChhhEEEEE
Confidence 56777777 9999999999999999999999995 442 1 1 1222 1 2223220 11
Q ss_pred CCCCCC------------HHHHHHHHHHH-HHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcc
Q 011624 244 AGTEVK------------PSQIAKQGLEE-AKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (481)
Q Consensus 244 ~~~~~~------------~~~~l~~~l~~-~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~ 307 (481)
...... ..+.+.+.+.+ + ..+||++|||++|.+.. +.....++++... .++++|+++..
T Consensus 77 ~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l-~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~----~pviLV~~~~~ 151 (228)
T 3of5_A 77 FNQAVAPHIIAAKTKVDISIENLKQFIEDKY-NQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQ----IPVLLVSAIKV 151 (228)
T ss_dssp ESSSSCHHHHHHHTTCCCCHHHHHHHHHGGG-GSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHT----CCEEEEEECST
T ss_pred ECCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HccCCEEEEECCCccccccccchhHHHHHHHcC----CCEEEEEcCCc
Confidence 111111 12334455555 4 37899999999976532 2234556555555 78999999854
Q ss_pred h--HHHHHHHHHh-hhcCCeeEEEEcCCCCC-CchhHH-HHHHHHhCCCeEEeecCC
Q 011624 308 G--QEAAALVTTF-NIEIGITGAILTKLDGD-SRGGAA-LSVKEVSGKPIKLVGRGE 359 (481)
Q Consensus 308 ~--~~~~~~~~~f-~~~~~i~GvIlnKvD~~-~~~g~~-~~~~~~~glPV~~ig~g~ 359 (481)
+ ..+...++.+ ..++++.|+|+|+++.. .+.... ..+.+.+|+|+ +|..|
T Consensus 152 ~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pv--LG~iP 206 (228)
T 3of5_A 152 GCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKC--SAKIS 206 (228)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCC--SEEEE
T ss_pred chHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCE--EEECC
Confidence 3 2222222222 45678999999999875 444444 45556789999 88777
No 47
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.37 E-value=2.4e-12 Score=131.57 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=37.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~--~~G~kVlLId~D~~ 222 (481)
..|++++|+||+||||++++||.+|+ ++|+||++||+|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 46777889999999999999999999 89999999999984
No 48
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.37 E-value=2.6e-12 Score=132.93 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=94.7
Q ss_pred CCCCEEEEEE-cCCCCCHHHHHHHHHHHHH------HcCCeEEEEeccCCchhH----------------HHHHHH----
Q 011624 180 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAA----------------IDQLVI---- 232 (481)
Q Consensus 180 ~~~~~VI~i~-G~~GvGKTTta~~LA~~L~------~~G~kVlLId~D~~rp~a----------------idql~~---- 232 (481)
..++++|+++ |+||+||||++++||.+|+ ++|++|++||+|++.... .+.+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccc
Confidence 3456777775 8899999999999999999 479999999999975211 000100
Q ss_pred ---h------hhhcCCCeecCCCCCC-----HH--------------HHHHHHHHHHHcCCCcEEEEcCCCCccccHHHH
Q 011624 233 ---L------GEQVGVPVYTAGTEVK-----PS--------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 284 (481)
Q Consensus 233 ---~------~~~~gv~v~~~~~~~~-----~~--------------~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~ 284 (481)
. ....|+.+++.+.... .. ..+++.++.++ ++||+|||||||.... ...
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~--~~~ 261 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDA--FLK 261 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSH--HHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccH--HHH
Confidence 0 0113455555443210 00 12245566664 7899999999998742 122
Q ss_pred HHHHhhhhccCCceEEEEEeCcch-----H-------HHHHHHHHhhhcCCeeEEE--EcCCCCCCch-hHHHHHHHHhC
Q 011624 285 DELKDVKRVLNPTEVLLVVDAMTG-----Q-------EAAALVTTFNIEIGITGAI--LTKLDGDSRG-GAALSVKEVSG 349 (481)
Q Consensus 285 ~el~~i~~~~~p~~vvLVvda~~~-----~-------~~~~~~~~f~~~~~i~GvI--lnKvD~~~~~-g~~~~~~~~~g 349 (481)
..+. ..+.+++|+.+... . ...+.++.+.....+.|+| +|+.+..... .....+.+.+|
T Consensus 262 ~~l~------~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 262 NALA------SANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFG 335 (398)
T ss_dssp HHHH------HCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHHHHHG
T ss_pred HHHH------HCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHHHHhc
Confidence 2221 13778888876321 1 1222234444456666664 4454433222 23345566778
Q ss_pred CCe
Q 011624 350 KPI 352 (481)
Q Consensus 350 lPV 352 (481)
.++
T Consensus 336 ~~v 338 (398)
T 3ez2_A 336 GDM 338 (398)
T ss_dssp GGB
T ss_pred ccc
Confidence 776
No 49
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.36 E-value=4.4e-12 Score=130.32 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=84.9
Q ss_pred cCCCCEEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc-----------hhHHHHHHH-----------hh-
Q 011624 179 AKSRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----------PAAIDQLVI-----------LG- 234 (481)
Q Consensus 179 ~~~~~~VI~i~-G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r-----------p~aidql~~-----------~~- 234 (481)
...++++|+++ |+||+||||++++||.+|+++|++|++||+|.+. .+..+.+.. ..
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 34567888876 6899999999999999999999999999999331 111111111 00
Q ss_pred ----hhcCCCeecCCCCCC-----HHHHHHHHHHHHH-cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEe
Q 011624 235 ----EQVGVPVYTAGTEVK-----PSQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 304 (481)
Q Consensus 235 ----~~~gv~v~~~~~~~~-----~~~~l~~~l~~~~-~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvd 304 (481)
...|+.+++.+.... ..+.+...++.+. ...||+||||||+.... .... +.. ..+.+++|+.
T Consensus 219 ~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~--~~~~----~l~--~aD~vivv~~ 290 (373)
T 3fkq_A 219 CIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEI--EKLK----LLS--KAWRIIVVND 290 (373)
T ss_dssp TCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCH--HHHH----HHT--TCSEEEEEEC
T ss_pred HhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCH--HHHH----HHH--HCCEEEEEec
Confidence 023555555432111 1233445555543 26899999999976542 1111 122 2478888887
Q ss_pred Ccc-h----HHHHHHHHHhhhcCCeeEEEEcCC
Q 011624 305 AMT-G----QEAAALVTTFNIEIGITGAILTKL 332 (481)
Q Consensus 305 a~~-~----~~~~~~~~~f~~~~~i~GvIlnKv 332 (481)
+.. + .++.+.++.+....+ .++|.|+.
T Consensus 291 ~~~~s~~~l~~~~~~l~~l~~~~~-~~vv~N~~ 322 (373)
T 3fkq_A 291 GSQLSNYKFMRAYESVVLLEQNDD-INIIRNMN 322 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSTT-CCCGGGEE
T ss_pred CCchHHHHHHHHHHHHHHhcccCC-cEEEehhH
Confidence 732 2 344555555544322 34444443
No 50
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=99.34 E-value=1.2e-13 Score=115.79 Aligned_cols=73 Identities=40% Similarity=0.587 Sum_probs=42.9
Q ss_pred cccHHHHHHHHhhhhccCCccccccCCCCCCCccc-cccchhhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 409 ~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~~~~-~~~~d~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
+|||+||++|++++.+||+++.+++|+||++++.. .....++..|+++++||+|||++|+.+|.||++||++|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii~~SR~~R 74 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRR 74 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhcCHHHHHH
Confidence 49999999999999999999999999999875432 21223467889999999999999999999999998876
No 51
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.29 E-value=2.1e-11 Score=132.56 Aligned_cols=45 Identities=36% Similarity=0.530 Sum_probs=40.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
+.+++++++|+||+||||++++||.+++++|+||++||+|+ ++..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l 50 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNV 50 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 45678999999999999999999999999999999999998 4443
No 52
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=99.29 E-value=2e-13 Score=118.14 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=62.4
Q ss_pred cccccHHHHHHHHhhhhccCCccccccCCCCCCC--ccccccchhhhcchhHHHHHHccChhhhcc---CCcc--ccccc
Q 011624 407 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPGIFFF---SIII--IGLTF 479 (481)
Q Consensus 407 ~~~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~--~~~~~~~d~a~~f~~~~~li~sm~~e~~~~---~~l~--~~~~~ 479 (481)
.++|||+||++|++++.+||+++++++|+||+++ +.......++..|+++++||+|||++|+.+ |.|| ++||+
T Consensus 12 ~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk 91 (129)
T 1mfq_C 12 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRI 91 (129)
T ss_dssp CSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHH
T ss_pred cCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHHH
Confidence 5689999999999999999999999999999876 442222345678999999999999999999 9999 99998
Q ss_pred CC
Q 011624 480 KR 481 (481)
Q Consensus 480 ~~ 481 (481)
+|
T Consensus 92 ~R 93 (129)
T 1mfq_C 92 QR 93 (129)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 53
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.28 E-value=1.8e-11 Score=118.54 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEe-----ccCCchhHHHHHHHh----hhhc-CCCeec-----CC
Q 011624 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVIL----GEQV-GVPVYT-----AG 245 (481)
Q Consensus 182 ~~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId-----~D~~rp~aidql~~~----~~~~-gv~v~~-----~~ 245 (481)
..+.++++|. +|+|||++++.|+.+|+++|++|...- ++.......|.. .+ .... |++... ..
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~-~~~~~~~~~~~g~~~~~~~p~~~~ 98 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAH-LFLQDNRLLDRSLTLKDISFYRYH 98 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHH-HHHHHHHTTCTTCCHHHHCCEECS
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHH-HHHHHHHHHhCCCChHHeeeEEEC
Confidence 3467777777 999999999999999999999999553 111000112221 12 2222 443211 11
Q ss_pred CCC--------------CHHHHHHHHHHHHHcCCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch
Q 011624 246 TEV--------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (481)
Q Consensus 246 ~~~--------------~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~ 308 (481)
... ...+.+.+.++++ ..+||+||||++|.+.. +..+..++++.+. .+++||+++..+
T Consensus 99 ~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~----~pVILV~~~~lg 173 (242)
T 3qxc_A 99 KVSAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLDFALKLK----AKMLLISHDNLG 173 (242)
T ss_dssp SSSCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHT----CEEEEEECCSTT
T ss_pred CCCChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHHHHHHcC----CCEEEEEcCCCc
Confidence 011 1123455666665 37899999999987643 2335566665555 789999999544
Q ss_pred --HHHHHHHHHh-hhcCCeeEEEEcCCCCCCc
Q 011624 309 --QEAAALVTTF-NIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 309 --~~~~~~~~~f-~~~~~i~GvIlnKvD~~~~ 337 (481)
..+...+..+ ...+. .|+|+|+++....
T Consensus 174 ~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~~ 204 (242)
T 3qxc_A 174 LINDCLLNDFLLKSHQLD-YKIAINLKGNNTA 204 (242)
T ss_dssp HHHHHHHHHHHHHTSSSC-EEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCC-EEEEEeCCCCccc
Confidence 2222223333 45678 9999999987654
No 54
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.27 E-value=4.9e-12 Score=122.45 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=82.8
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH-------------HHHHHHhhhhcCCC--eecC-
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILGEQVGVP--VYTA- 244 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a-------------idql~~~~~~~gv~--v~~~- 244 (481)
.++.+++++|++||||||++.+||.+++ +|++|++||+|++.... .+... ....+.. +++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM--REGYGPNGAIVESY 88 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHH--TTTCCHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHh--hccCCCCCcEEecH
Confidence 4567888899999999999999999999 99999999999974321 11100 0000000 0000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccH--HHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHH----
Q 011624 245 GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV---- 315 (481)
Q Consensus 245 ~~~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~--~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~---- 315 (481)
.........+.+.+..+. .+||++||||||...... .+...+.... .. +-+++|+|+... .+.....
T Consensus 89 ~~~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp HHHHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 000011233445555554 569999999999864210 0111121111 23 667888887432 2221111
Q ss_pred H-HhhhcCCeeEEEEcCCCCCC
Q 011624 316 T-TFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 316 ~-~f~~~~~i~GvIlnKvD~~~ 336 (481)
. ......+ ..+|+||+|...
T Consensus 165 ~~~~~~~~p-~~iv~NK~D~~~ 185 (262)
T 1yrb_A 165 LIDLRLGAT-TIPALNKVDLLS 185 (262)
T ss_dssp HHHHHHTSC-EEEEECCGGGCC
T ss_pred HHhcccCCC-eEEEEecccccc
Confidence 1 1122344 358999999654
No 55
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.25 E-value=2e-11 Score=124.41 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=38.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~--~~G~kVlLId~D~~ 222 (481)
..++++++|+||+||||++++||.+++ ++|++|++||+|+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 457999999999999999999999999 89999999999964
No 56
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.24 E-value=5e-11 Score=121.04 Aligned_cols=143 Identities=22% Similarity=0.243 Sum_probs=79.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhh---------cCCCeecCCCC--C-
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ---------VGVPVYTAGTE--V- 248 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~---------~gv~v~~~~~~--~- 248 (481)
.++.+++++|++|+||||++.+|+..+...|.+|.+++.|++++..... .++.. .+..+...... .
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~--il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS--ILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC-----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcc--eecccchHHhhccCCCceeecCccccccc
Confidence 3567899999999999999999999999999999999999987542111 11110 01111111100 0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEE
Q 011624 249 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 328 (481)
Q Consensus 249 ~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvI 328 (481)
.......+.+..+.+.+++++||||||...... .+ . ...+.+++|+|+..+... ..++...... ...+|
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----~~---~--~~aD~vl~Vvd~~~~~~~-~~l~~~~~~~-p~ivv 200 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSET----EV---A--RMVDCFISLQIAGGGDDL-QGIKKGLMEV-ADLIV 200 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----HH---H--TTCSEEEEEECC-------CCCCHHHHHH-CSEEE
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHH----HH---H--HhCCEEEEEEeCCccHHH-HHHHHhhhcc-cCEEE
Confidence 111112233333335789999999999764211 11 1 235888999998654321 1111000012 24589
Q ss_pred EcCCCCCC
Q 011624 329 LTKLDGDS 336 (481)
Q Consensus 329 lnKvD~~~ 336 (481)
+||+|...
T Consensus 201 ~NK~Dl~~ 208 (341)
T 2p67_A 201 INKDDGDN 208 (341)
T ss_dssp ECCCCTTC
T ss_pred EECCCCCC
Confidence 99999754
No 57
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=99.20 E-value=5.6e-13 Score=112.55 Aligned_cols=73 Identities=23% Similarity=0.469 Sum_probs=62.7
Q ss_pred cccHHHHHHHHhhhhccCCccccccCCCCCCC-c-cccccchhhhcchhHHHHHHccChhhhcc---CCccc--ccccCC
Q 011624 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPGIFFF---SIIII--GLTFKR 481 (481)
Q Consensus 409 ~~dl~~l~~~~~~~~~~g~~~~~~~~~p~~~~-~-~~~~~~d~a~~f~~~~~li~sm~~e~~~~---~~l~~--~~~~~~ 481 (481)
+|||+||++|++++.+||+++++++|+||+++ + .......++..|+++++||+|||++|+.+ |.||+ +||++|
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 49999999999999999999999999999875 3 32222235678899999999999999999 99999 888876
No 58
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.19 E-value=1.5e-10 Score=118.96 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=36.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++|++++|+||+||||++++||.+++++|++|++||+ +.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~ 40 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE 40 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence 4688899999999999999999999999999999999 64
No 59
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.07 E-value=2.5e-10 Score=123.99 Aligned_cols=42 Identities=36% Similarity=0.438 Sum_probs=37.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+..+++++|++|+||||++++||..|+++|++|+++|+|++.
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 346777789999999999999999999999999999999863
No 60
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.94 E-value=5.2e-09 Score=106.56 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHH-------HHHHHhhhhcCCCeecCCC--CC--CH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGT--EV--KP 250 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ai-------dql~~~~~~~gv~v~~~~~--~~--~~ 250 (481)
...+++++|++|+||||+...|+..+...|.+|.++..|++.+... ..+..++......+.+... .. ..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3578999999999999999999999998899999999999875321 1111111111111111110 00 01
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEc
Q 011624 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 251 ~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIln 330 (481)
.. ..+.+..+...++|++||||||....+. .+ .. ..+.+++|+|+..+.+......... .. ..-+|+|
T Consensus 153 r~-~~~~~~~~~~~~~~~iliDT~Gi~~~~~----~l---~~--~~d~vl~V~d~~~~~~~~~i~~~il-~~-~~ivVlN 220 (349)
T 2www_A 153 RT-TNEAILLCEGAGYDIILIETVGVGQSEF----AV---AD--MVDMFVLLLPPAGGDELQGIKRGII-EM-ADLVAVT 220 (349)
T ss_dssp TT-HHHHHHHHHHTTCSEEEEECCCC--CHH----HH---HT--TCSEEEEEECCC------------C-CS-CSEEEEC
T ss_pred HH-HHHHHHhhccCCCCEEEEECCCcchhhh----hH---Hh--hCCEEEEEEcCCcchhHHHhHHHHH-hc-CCEEEEe
Confidence 11 1122323334789999999999753221 11 11 3477889999865532211111111 11 2457889
Q ss_pred CCCCCC
Q 011624 331 KLDGDS 336 (481)
Q Consensus 331 KvD~~~ 336 (481)
|+|...
T Consensus 221 K~Dl~~ 226 (349)
T 2www_A 221 KSDGDL 226 (349)
T ss_dssp CCSGGG
T ss_pred eecCCC
Confidence 999753
No 61
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.87 E-value=1.2e-08 Score=114.96 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcch-HHH-HHHHHHh-hhcCCeeEEEEcCCCCCCch
Q 011624 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEA-AALVTTF-NIEIGITGAILTKLDGDSRG 338 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~-~~~-~~~~~~f-~~~~~i~GvIlnKvD~~~~~ 338 (481)
++|++||+++|.+.. +.....++++.++ .+|+||+|+..+ .+. +-....+ ...+.+.|||+|+.+. .+.
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~----~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~-~~~ 275 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR----LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL-VNE 275 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC----CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS-CTH
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC----CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch-hHH
Confidence 799999999986532 2234566666655 789999999543 222 1111212 3468899999998873 334
Q ss_pred hHHHHHHHHhCCCeEEeecCCCCCC
Q 011624 339 GAALSVKEVSGKPIKLVGRGERMED 363 (481)
Q Consensus 339 g~~~~~~~~~glPV~~ig~g~~v~d 363 (481)
..+....+ .++||..+|..|+.+.
T Consensus 276 ~~l~~~l~-~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 276 VPLTSYLR-NKVPVLVLPPVPKDPS 299 (831)
T ss_dssp HHHHHHTT-TSSCEEEECCCCCCTT
T ss_pred HHHHHHHH-hCCCceeeCCCCCCCH
Confidence 34433332 2667766999888754
No 62
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.84 E-value=1.5e-08 Score=95.03 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC---CCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQGL 258 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~---~~~~~~~l~~~l 258 (481)
+..+++++|.+||||||++.+|+..+... ++|.+++.|++.+ .+.... ...|..+...+. .........+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~--~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK--ADYERV--RRFGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH--HHHHHH--HTTTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc--hhHHHH--HhCCCcEEEecCCceeecccHHHHHHH
Confidence 35688999999999999999999887655 8999999999864 232211 122444332222 111122333333
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH-HHHHHhhhcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~-~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
. ...++|++||||+|.+.... ... ...+.+++|+|+..+.... .....+. . ..-+|+||+|..
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~--------~~~-~~~~~~i~vvd~~~~~~~~~~~~~~~~--~-~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPV--------DFD-LGENYRVVMVSVTEGDDVVEKHPEIFR--V-ADLIVINKVALA 167 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGG--------GCC-CSCSEEEEEEEGGGCTTHHHHCHHHHH--T-CSEEEEECGGGH
T ss_pred H--hcCCCCEEEEeCCCCCCCCc--------hhc-cccCcEEEEEeCCCcchhhhhhhhhhh--c-CCEEEEecccCC
Confidence 3 34689999999999532110 000 1346789999986543211 1111121 2 345899999963
No 63
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=6.2e-08 Score=98.13 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=79.0
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH---H----HHHHHhhhhcCCCeecCCCCCCHHH-
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I----DQLVILGEQVGVPVYTAGTEVKPSQ- 252 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a---i----dql~~~~~~~gv~v~~~~~~~~~~~- 252 (481)
.++.+++++|++|+||||+...|+..+...+.+|.++..|++.... + ..+.......+..............
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567999999999999999999999988889999999999864321 0 0000111111111111111111111
Q ss_pred --HHHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEc
Q 011624 253 --IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (481)
Q Consensus 253 --~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIln 330 (481)
...+.+..+...++|++||||||....+... .. ..+-+++|+|+..+.+. ..++...... ..-+++|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-------~~--~~d~vl~v~d~~~~~~~-~~i~~~i~~~-~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV-------AD--LTDFFLVLMLPGAGDEL-QGIKKGIFEL-ADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-------HT--TSSEEEEEECSCC-------CCTTHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-------Hh--hCCEEEEEEcCCCcccH-HHHHHHHhcc-ccEEEEE
Confidence 1223333334478999999999986532211 11 23677888887544321 1111000011 2346789
Q ss_pred CCCC
Q 011624 331 KLDG 334 (481)
Q Consensus 331 KvD~ 334 (481)
|+|.
T Consensus 202 K~Dl 205 (337)
T 2qm8_A 202 KADD 205 (337)
T ss_dssp CCST
T ss_pred chhc
Confidence 9995
No 64
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.70 E-value=2.1e-08 Score=95.72 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
-.|++.|++||||||++.++|..++++|++|++++.|++....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 4577789999999999999999999999999999999986443
No 65
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.39 E-value=9e-06 Score=82.58 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++..++++|.+||||||+...|+ |..+. +...++. ..+..+.. +
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~~~------------t~~~~~~~-----------------~ 209 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYPFT------------TRGINVGQ-----------------F 209 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCTTC------------SSCEEEEE-----------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCCCe------------eeceeEEE-----------------E
Confidence 45688999999999999998885 32221 1111110 00000000 0
Q ss_pred HcCCCcEEEEcCCCCccccH-----HHHHHHHhhhhccCCceEEEEEeCcch-----HHHHHHHHHhhhc--CCeeEEEE
Q 011624 262 KKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIE--IGITGAIL 329 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~-----~~~~el~~i~~~~~p~~vvLVvda~~~-----~~~~~~~~~f~~~--~~i~GvIl 329 (481)
...+.++.++||||...... .....+..+ ...++.+++|+|+... .+.......+... -...-+|+
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL--RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG--GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EecCceEEEEeCCCccccchhhhhHHHHHHHHHH--HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11345789999999854311 111111111 1235889999997432 2222333332221 12345889
Q ss_pred cCCCCCCchhH--HHHHHHHhCCCeEEee
Q 011624 330 TKLDGDSRGGA--ALSVKEVSGKPIKLVG 356 (481)
Q Consensus 330 nKvD~~~~~g~--~~~~~~~~glPV~~ig 356 (481)
||+|....... +...+...+.|+.+++
T Consensus 288 NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 288 NKIDVADEENIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred ECcccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 99998654332 3444445677775555
No 66
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1e-06 Score=96.08 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 011624 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (481)
Q Consensus 83 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~l~~i~~~Ll~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 162 (481)
.||.+|++.|+. +.+ +++.++ ..+|-+..++. +.+++.+++.+.+.++.+..+|...+.+.+.
T Consensus 36 ~~~~~~~~~~~~----~~~---~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (611)
T 3izq_1 36 EVFPTLKAQLQD----YQG---WDNLSL-------KLALFDNNFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVT 98 (611)
T ss_dssp CCSTTHHHHHHH----HHC---CCSSHH-------HHHHHHTTTCS---SHHHHHHHHTTCSSSCC--------------
T ss_pred HHHHHHHHHHHH----hcC---cchhHH-------HHHHHHhhccH---HHHHHHHHHHhccccccCCCChHHHHHHHHH
Confidence 355666655543 322 555544 44444555554 6677778888777777766666655544444
Q ss_pred HHHHH
Q 011624 163 DELVK 167 (481)
Q Consensus 163 ~~L~~ 167 (481)
+.+.+
T Consensus 99 ~~~~~ 103 (611)
T 3izq_1 99 QKLAN 103 (611)
T ss_dssp -----
T ss_pred HHHHh
Confidence 44433
No 67
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.28 E-value=2.2e-06 Score=80.41 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCC--C--CCCHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--T--EVKPSQIAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~--~--~~~~~~~l~~~ 257 (481)
++..|+++|.+||||||++.+|+..+... .++..|+.|++.+ .+.... ...|...+..+ . .....+ ..+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~--~d~~~~--~~~~~~~~~~~~~~~~~l~~~~-~~~~ 110 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAK--FDAERM--EKHGAKVVPLNTGKECHLDAHL-VGHA 110 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTH--HHHHHH--HTTTCEEEEEECTTCSSCCHHH-HHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCC--ccHHHH--HhcCCcEEEecCCceEeccHHH-HHHH
Confidence 35678888999999999999999877554 7899999998753 332211 12233333221 1 122222 2333
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH-HHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~-~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+..+...++|++++|++|.+... . ... ......+.|+|+..+.+. ......+. ...-+|+||+|..
T Consensus 111 ~~~l~~~~~d~~~id~~g~i~~~-~-------s~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 111 LEDLNLDEIDLLFIENVGNLICP-A-------DFD-LGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLA 177 (226)
T ss_dssp HTTSCGGGCSEEEEECCSCSSGG-G-------GCC-CSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGH
T ss_pred HHHHhcCCCCEEEEeCCCCccCc-c-------hhh-hccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccC
Confidence 33332346799999999964321 0 011 122445677775322111 00111121 2346899999964
No 68
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.27 E-value=1.3e-06 Score=79.72 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..+++++|++|+||||++.+|+..|..+|++|.++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999999999999998875
No 69
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.24 E-value=1.2e-05 Score=74.66 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=39.2
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.|.++++++.. ++.+++++|++|+||||++..++. ..|.+|++++.+.
T Consensus 8 ~LD~~l~Ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 8 SLDSLLGGGFA-------PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHTTSSBC-------TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred HHHHhhcCCCc-------CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 45666654442 456999999999999999999998 5689999999986
No 70
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.23 E-value=1.3e-05 Score=81.10 Aligned_cols=158 Identities=21% Similarity=0.203 Sum_probs=96.7
Q ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 183 ~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+.++++|. ..+||||++..|...+.++|+++.++. ++-.-.+ . ...+++.-..-.. .-...+......+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~-----tgqtg~~-~--~~~gi~~Dav~~d-f~aG~ve~~~~~~ 222 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA-----TGQTGVM-L--EGDGVALDAVRVD-FAAGAVEQMVMRY 222 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC-----CSHHHHH-H--HSCSCCGGGSBHH-HHHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe-----ccchhhh-h--hcCCcchhHHHHH-HHhhhHHHHHHHh
Confidence 456667777 999999999999999999999999643 2211111 1 2233333111000 0011222333444
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc--h-----------HHHHHHHHHh----h--hcC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--G-----------QEAAALVTTF----N--IEI 322 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~--~-----------~~~~~~~~~f----~--~~~ 322 (481)
.+++|+++|++.|.+.... .. ....++...+|+.++||.++.. - .+....+..+ + ...
T Consensus 223 -~~~~d~vlVEGqGgl~~P~-~~-~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~ 299 (349)
T 2obn_A 223 -GKNYDILHIEGQGSLLHPG-ST-ATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTV 299 (349)
T ss_dssp -TTTCSEEEECCCCCTTSTT-CC-THHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCC
T ss_pred -ccCCCEEEEeCCCcccCcC-hH-hHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCC
Confidence 3589999999998764322 11 1224666667888999998622 1 3333333333 2 468
Q ss_pred CeeEEEEcCCCCCCc--hhHHHHHHHHhCCCe
Q 011624 323 GITGAILTKLDGDSR--GGAALSVKEVSGKPI 352 (481)
Q Consensus 323 ~i~GvIlnKvD~~~~--~g~~~~~~~~~glPV 352 (481)
++.|+++|..+.... ...+..+.+.+|+|+
T Consensus 300 ~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv 331 (349)
T 2obn_A 300 PVVGIALNTAHLDEYAAKEAIAHTIAETGLPC 331 (349)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence 899999999875432 344566778899999
No 71
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=1.1e-05 Score=76.33 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=42.3
Q ss_pred HHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 165 L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
|.++++++.. ++.++++.|++|+||||++.+++..+...|.+|++++.+..
T Consensus 12 LD~~l~gGl~-------~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 12 VDEILHGGIP-------ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp HHHHTTTSEE-------TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred HHHHcCCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4555655443 45699999999999999999999998888999999999864
No 72
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.18 E-value=1.7e-05 Score=80.82 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=66.1
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC-CchhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~-~rp~aidql~~~~~~~gv~ 240 (481)
.+|..+|+ ++.. +..++.+.|++|+||||++..++..+...|.+|++|+++. +.+. ++...|++
T Consensus 47 ~~LD~~Lg~GGi~-------~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-------ra~rlgv~ 112 (356)
T 3hr8_A 47 LAIDIATGVGGYP-------RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-------YAKNLGVD 112 (356)
T ss_dssp HHHHHHTSSSSEE-------TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHHTCC
T ss_pred HHHHHHhccCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-------HHHHcCCc
Confidence 46788888 6554 4689999999999999999999999999999999999875 3332 22223332
Q ss_pred eec--CCCCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCCc
Q 011624 241 VYT--AGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 241 v~~--~~~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~~ 277 (481)
.-. ........+.+ ..+.. ++...+|++|||+...+
T Consensus 113 ~~~l~i~~~~~~e~~l-~~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 113 LKSLLISQPDHGEQAL-EIVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp GGGCEEECCSSHHHHH-HHHHHHHHTSCCSEEEEECTTTC
T ss_pred hhhhhhhhccCHHHHH-HHHHHHhhhcCCCeEEehHhhhh
Confidence 111 01122333333 22332 23367899999997655
No 73
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.16 E-value=1.4e-05 Score=81.64 Aligned_cols=101 Identities=23% Similarity=0.331 Sum_probs=65.8
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCe
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v 241 (481)
..|..+++ ++.. ++.++.+.|++|+||||++..++..+.+.|.+|++++++.--. ++ +....|++.
T Consensus 60 ~~LD~~Lg~GGl~-------~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~----~~--~a~~~g~d~ 126 (366)
T 1xp8_A 60 LSLDLALGVGGIP-------RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD----PV--YARALGVNT 126 (366)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----HH--HHHHTTCCG
T ss_pred HHHHHHhCCCCcc-------CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh----HH--HHHHcCCCH
Confidence 35677777 5443 4568999999999999999999999998999999999995321 11 123334331
Q ss_pred e---cCCCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCcc
Q 011624 242 Y---TAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 242 ~---~~~~~~~~~~~l~~~l~~~-~~~~~D~VIIDt~G~~~ 278 (481)
- ... .....+ +.+.+..+ +..++|+||||+.+.+.
T Consensus 127 ~~l~i~~-~~~~e~-~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DELLVSQ-PDNGEQ-ALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGCEEEC-CSSHHH-HHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHceeec-CCcHHH-HHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1 111 122333 33334433 23579999999987664
No 74
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.16 E-value=1.7e-06 Score=93.06 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=78.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH---HHc-----CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL---KKQ-----GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI 253 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L---~~~-----G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~ 253 (481)
+-|-|+++|+.++||||++-+|.++- .+. |.... ....|.+ .....-|+.+.....
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~--------~~~~D~~-~~EreRGITI~s~~~------- 93 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAAR--------HATSDWM-AMERERGISVTTSVM------- 93 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-----------------------------CTTTEE-------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCcccc--------ccccCCh-HHHHHCCCcEeeceE-------
Confidence 45789999999999999999996432 111 11000 0000111 111122333321110
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH-----HHHHHHHHhhhcCCeeEEE
Q 011624 254 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAI 328 (481)
Q Consensus 254 l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~-----~~~~~~~~f~~~~~i~GvI 328 (481)
.+.++++.+-||||||..+ +..|+...++++ |.+++|+||..|- ....++..+ +++ .-++
T Consensus 94 ------~~~~~~~~iNlIDTPGHvD----F~~Ev~raL~~~--DgAvlVvda~~GV~~qT~~v~~~a~~~--~lp-~i~f 158 (548)
T 3vqt_A 94 ------QFPYRDRVVNLLDTPGHQD----FSEDTYRVLTAV--DSALVVIDAAKGVEAQTRKLMDVCRMR--ATP-VMTF 158 (548)
T ss_dssp ------EEEETTEEEEEECCCCGGG----CSHHHHHHHHSC--SEEEEEEETTTBSCHHHHHHHHHHHHT--TCC-EEEE
T ss_pred ------EEEECCEEEEEEeCCCcHH----HHHHHHHHHHhc--CceEEEeecCCCcccccHHHHHHHHHh--CCc-eEEE
Confidence 1135788999999999876 556666666654 8899999996652 122223322 233 4578
Q ss_pred EcCCCCC-Cchh-HHHHHHHHhCCCeE
Q 011624 329 LTKLDGD-SRGG-AALSVKEVSGKPIK 353 (481)
Q Consensus 329 lnKvD~~-~~~g-~~~~~~~~~glPV~ 353 (481)
+||+|.. +... .+..+...++..+.
T Consensus 159 INK~Dr~~ad~~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 159 VNKMDREALHPLDVMADIEQHLQIECA 185 (548)
T ss_dssp EECTTSCCCCHHHHHHHHHHHHTSEEE
T ss_pred EecccchhcchhHhhhhhhhhcCCceE
Confidence 9999953 4444 34566777776553
No 75
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.14 E-value=6.7e-06 Score=81.90 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++..++++|.+||||||++..|. |.++..+...++. +.....+ ++
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~t--------T~~~~~~--~~------------------- 53 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGT--------TRMRVLG--VK------------------- 53 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCC--------CCSCEEE--EE-------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCc--------eeeEEEE--EE-------------------
Confidence 45789999999999999998885 4444322222110 0000000 00
Q ss_pred HcC-CCcEEEEcCCCCcccc------HHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHH-HHHhhhcCCeeEEEEcC
Q 011624 262 KKK-NVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL-VTTFNIEIGITGAILTK 331 (481)
Q Consensus 262 ~~~-~~D~VIIDt~G~~~~d------~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~-~~~f~~~~~i~GvIlnK 331 (481)
... +++++|+||||..... ..+......... .++.+++|+|++.+ ...... .......-...-+|+||
T Consensus 54 ~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~--~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK 131 (308)
T 3iev_A 54 NIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE--EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131 (308)
T ss_dssp EETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH--HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred ecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhh--cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEEC
Confidence 013 6789999999986432 222222222222 35889999999543 222222 33333222235588999
Q ss_pred CCCC
Q 011624 332 LDGD 335 (481)
Q Consensus 332 vD~~ 335 (481)
+|..
T Consensus 132 ~Dl~ 135 (308)
T 3iev_A 132 IDKI 135 (308)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9975
No 76
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.13 E-value=6.9e-06 Score=83.67 Aligned_cols=101 Identities=21% Similarity=0.375 Sum_probs=64.9
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC-chhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~-rp~aidql~~~~~~~gv~ 240 (481)
..|..+++ ++.. +..++++.|++|+||||++..++..+.++|.+|++++++.- .+.. ....|++
T Consensus 49 ~~LD~~Lg~GGl~-------~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-------a~~~g~~ 114 (356)
T 1u94_A 49 LSLDIALGAGGLP-------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVD 114 (356)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-------HHHTTCC
T ss_pred HHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-------HHHcCCC
Confidence 35667776 5443 45699999999999999999999999999999999999642 2221 2223332
Q ss_pred eecC--CCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCcc
Q 011624 241 VYTA--GTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 241 v~~~--~~~~~~~~~l~~~l~~~-~~~~~D~VIIDt~G~~~ 278 (481)
.-.. ... ...+.+.+.+..+ +..++|+||||+...+.
T Consensus 115 ~~~l~i~~~-~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 115 IDNLLCSQP-DTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp GGGCEEECC-SSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred hhheeeeCC-CCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 1100 011 1223333333333 23679999999987664
No 77
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.10 E-value=5.7e-06 Score=88.64 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
.+.|+++|.+|+||||++.+|......-+....+.+.|.++....+.. ......|+.+..... .+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~-~~E~~rGiTi~~~~~-------------~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWM-EMEKQRGISITTSVM-------------QFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccc-hhcccCCcceeeeEE-------------EEE
Confidence 467899999999999999988743111111222233333333222221 111122222211000 011
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCCc-h
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSR-G 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~~-~ 338 (481)
..++.+.||||||..... .++..... ..+.+++|+|+..+. .......... ..++ .-+++||+|.... .
T Consensus 79 ~~~~~i~liDTPG~~df~----~~~~~~l~--~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFS----EDTYRTLT--AVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP 151 (529)
T ss_dssp ETTEEEEEECCCCSTTCC----HHHHHGGG--GCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH
T ss_pred ECCeEEEEEECCCChhHH----HHHHHHHH--HCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH
Confidence 356889999999985432 22222222 358899999995541 1122222222 2333 4588999997543 2
Q ss_pred -hHHHHHHHHhCCCeE
Q 011624 339 -GAALSVKEVSGKPIK 353 (481)
Q Consensus 339 -g~~~~~~~~~glPV~ 353 (481)
..+..+...++.++.
T Consensus 152 ~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 152 MELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 234556667777653
No 78
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.10 E-value=2.5e-05 Score=72.93 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=36.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.++++.|++|+||||++..|+..+...|.+|.+++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 35699999999999999999999888888889999998864
No 79
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.10 E-value=9.7e-06 Score=81.27 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=43.4
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeccC-Cchh
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPA 225 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~------G~kVlLId~D~-~rp~ 225 (481)
..|..+++++.. ++.++.+.|++|+||||++..++...... |.+|++++++. |++.
T Consensus 94 ~~LD~~L~GGl~-------~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~ 156 (324)
T 2z43_A 94 QALDGLLAGGIE-------TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE 156 (324)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred hhHHHhcCCCCC-------CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 356666654432 35699999999999999999999876554 78999999986 5554
No 80
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.10 E-value=5.8e-05 Score=83.55 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH--HHHHHHHh-hhcCCeeEEEEcCCCCCC-chh
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--AAALVTTF-NIEIGITGAILTKLDGDS-RGG 339 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~--~~~~~~~f-~~~~~i~GvIlnKvD~~~-~~g 339 (481)
..+++.||||||... +..++...+.. .+.+++|+|+..+.. ........ ..+++ .-+++||+|... ...
T Consensus 80 ~~~~i~liDTPG~~d----f~~~~~~~l~~--aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVD----FTIEVERSMRV--LDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGANFL 152 (704)
T ss_pred CceeEEEEeCCCccc----hHHHHHHHHHH--CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCcccccHH
Confidence 458999999999754 22333333332 488999999965421 11222211 12333 347899999643 333
Q ss_pred HH-HHHHHHhCCCe
Q 011624 340 AA-LSVKEVSGKPI 352 (481)
Q Consensus 340 ~~-~~~~~~~glPV 352 (481)
.+ ..+...++.++
T Consensus 153 ~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 153 KVVNQIKTRLGANP 166 (704)
T ss_pred HHHHHHHHHhCCCc
Confidence 33 44555556543
No 81
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.08 E-value=4.2e-05 Score=84.53 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCCc-hh
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSR-GG 339 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~~-~g 339 (481)
.++.+.||||||........... ... .+.+++|+|+..+. .......... .+++ .-+++||+|.... ..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~----l~~--aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~~~ 145 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERS----LRV--LDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGANFE 145 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHH----HHH--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCCHH
T ss_pred CCeeEEEEECcCCcchHHHHHHH----HHH--CCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccchH
Confidence 46789999999986543332222 222 48899999995441 1112222221 1233 4588999996533 22
Q ss_pred -HHHHHHHHhCCC
Q 011624 340 -AALSVKEVSGKP 351 (481)
Q Consensus 340 -~~~~~~~~~glP 351 (481)
.+..+...++.+
T Consensus 146 ~~~~~l~~~l~~~ 158 (693)
T 2xex_A 146 YSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 334455556654
No 82
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.07 E-value=1.6e-05 Score=80.50 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=43.1
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccC-Cchh
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPA 225 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~------~G~kVlLId~D~-~rp~ 225 (481)
..|..+++++.. ++.++.+.|++|+||||++..+|..... .|.+|++++++. |.+.
T Consensus 109 ~~LD~~LgGGl~-------~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~ 171 (343)
T 1v5w_A 109 QEFDKLLGGGIE-------SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD 171 (343)
T ss_dssp HHHHHHTTSSBC-------SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred hhHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 356666765443 4679999999999999999999986543 578999999986 4554
No 83
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.06 E-value=8.7e-05 Score=76.69 Aligned_cols=140 Identities=14% Similarity=0.241 Sum_probs=77.4
Q ss_pred HCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHH---------HHHHHHHhcCccccccccCCCCEEEEEEcCCC
Q 011624 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV---------RDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (481)
Q Consensus 123 ~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l---------~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~G 193 (481)
..|++..-+.++++.+.+... .+......+.+.- ..+|.++++++.. +..++.++|++|
T Consensus 121 ~~gis~~~~~~i~~~a~~~~~-----~~~~ta~~l~~~~~~~~~i~TG~~~LD~lLgGGI~-------~Gei~~I~G~sG 188 (400)
T 3lda_A 121 IKGISEAKADKLLNEAARLVP-----MGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVE-------TGSITELFGEFR 188 (400)
T ss_dssp STTCCHHHHHHHHHHHHHHSC-----CSCCCHHHHHHHHHTSCEECCSCHHHHHHTTTSEE-------TTSEEEEEESTT
T ss_pred HhCCCHHHHHHHHHHHHHhcc-----ccCCCHHHHHhhhccCCccccCChhHHHHhcCCcC-------CCcEEEEEcCCC
Confidence 356777777777766654321 1222222222111 1467777866554 456999999999
Q ss_pred CCHHHHHHHHHHHHHH------cCCeEEEEeccC-CchhHHHHHHHhhhhcCCCee------cCCCCCCHH---HHHHHH
Q 011624 194 VGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVY------TAGTEVKPS---QIAKQG 257 (481)
Q Consensus 194 vGKTTta~~LA~~L~~------~G~kVlLId~D~-~rp~aidql~~~~~~~gv~v~------~~~~~~~~~---~~l~~~ 257 (481)
+||||++..|+..... .+.+|++++... +++..+.+ +....|+..- ......... +.+..+
T Consensus 189 sGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~---~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~ 265 (400)
T 3lda_A 189 TGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---IAQRFGLDPDDALNNVAYARAYNADHQLRLLDAA 265 (400)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH---HHHHcCCChHhHhhcEEEeccCChHHHHHHHHHH
Confidence 9999999988765442 357899999875 55443322 2333343210 000111221 222233
Q ss_pred HHHHHcCCCcEEEEcCCCCc
Q 011624 258 LEEAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~ 277 (481)
...+...+++++|||.+...
T Consensus 266 ~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHhcCCceEEecchhhh
Confidence 33333356888999987543
No 84
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.06 E-value=9.8e-06 Score=78.56 Aligned_cols=42 Identities=38% Similarity=0.615 Sum_probs=37.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+|+++|.+||||||++..|+..|...|+.+.+++.|.++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 467999999999999999999999998889999888888654
No 85
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.05 E-value=1.5e-05 Score=77.24 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCCCccccHH----HHHH-HH-hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKA----MMDE-LK-DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~----~~~e-l~-~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.+.++.|+||||....... ...+ +. .......++.+++|+|++...........+...-...-+++||+|....
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 3457999999998654321 1111 11 1121135789999999976544444444343222235688999995322
Q ss_pred h---hHHHHHHHHhCCCeEEee
Q 011624 338 G---GAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 338 ~---g~~~~~~~~~glPV~~ig 356 (481)
. .....+....|.|+..+.
T Consensus 126 ~~~~~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 126 RGISIDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp TTCEECHHHHHHHHCSCEEECB
T ss_pred CCcHHHHHHHHHHcCCCEEEEE
Confidence 1 223456677899985444
No 86
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.04 E-value=2.4e-05 Score=78.06 Aligned_cols=91 Identities=21% Similarity=0.369 Sum_probs=59.4
Q ss_pred HCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHH---------HHHHHHHhcCccccccccCCCCEEEEEEcCCC
Q 011624 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV---------RDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (481)
Q Consensus 123 ~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l---------~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~G 193 (481)
..+++.+-+.+++....+... .+......+.+.. ...|..+++++.. +..++.+.|++|
T Consensus 41 ~~gis~~~a~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGl~-------~g~i~~i~G~~g 108 (322)
T 2i1q_A 41 IEGISEKAAAKMIMGARDLCD-----LGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLE-------SQSVTEFAGVFG 108 (322)
T ss_dssp STTCCHHHHHHHHHHHHHHTT-----CSCCCTHHHHHHHTTCCEECCSCHHHHHHTTSSEE-------TTEEEEEEESTT
T ss_pred hhCcCHHHHHHHHHHHHHhhh-----hcCCcHHHHHHHhccCCeecCCChhHHHhcCCCcc-------CCeEEEEECCCC
Confidence 367788877887777765431 1222223222111 1356666654432 467999999999
Q ss_pred CCHHHHHHHHHHHHH------------HcC----CeEEEEeccC-Cchh
Q 011624 194 VGKTTVSAKLANYLK------------KQG----KSCMLVAGDV-YRPA 225 (481)
Q Consensus 194 vGKTTta~~LA~~L~------------~~G----~kVlLId~D~-~rp~ 225 (481)
+||||++..+|.... +.| .+|++++++. |++.
T Consensus 109 sGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~ 157 (322)
T 2i1q_A 109 SGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE 157 (322)
T ss_dssp SSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH
T ss_pred CCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHH
Confidence 999999999997632 245 7999999985 4554
No 87
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.04 E-value=1.5e-05 Score=77.48 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=74.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...|+++|.+||||||+...|. |.+.. +. .+ |+ .++...... ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~~-~~--~~-~~-----------~t~~~~~~~---------------~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT------GLRQH-VG--NW-PG-----------VTVEKKEGI---------------ME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH------TTCEE-EE--EC-TT-----------SSCEEEEEE---------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCCcc-cC--CC-CC-----------eEEEeeEEE---------------EE
Confidence 3568899999999999998885 33321 11 00 10 011111000 01
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHH--hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcC-CeeEEEEcCCCCCCc--
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDSR-- 337 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~--~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~-~i~GvIlnKvD~~~~-- 337 (481)
..+..+.|+||||..........+.. .......++.+++|+|++...............- ...-+++||+|....
T Consensus 47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 24566899999997643221111111 1121234688999999976644333333222211 235588999994321
Q ss_pred -hhHHHHHHHHhCCCeEEe
Q 011624 338 -GGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 338 -~g~~~~~~~~~glPV~~i 355 (481)
.-....+....|.|+..+
T Consensus 127 ~~~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 127 AKIDIKKMRKELGVPVIPT 145 (271)
T ss_dssp CCCCHHHHHHHHSSCEEEC
T ss_pred cHHHHHHHHHHcCCcEEEE
Confidence 112455677889998533
No 88
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.03 E-value=0.0011 Score=69.33 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~ 222 (481)
+..+++++|++|+||||++.++|..++. .|.+|++++.+.-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4569999999999999999999998876 6899999998864
No 89
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=98.01 E-value=0.0002 Score=75.04 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecC--C---CCCCHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--G---TEVKPSQIAKQ 256 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~--~---~~~~~~~~l~~ 256 (481)
+..+++++|.+|+||||++.++|...+.+|.+|++++.+.-.......+ .+...+++.... + ........+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~--~~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRL--IVTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHH--HHHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 4569999999999999999999999988899999999986543332222 233344442111 0 00011122334
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
+...+. ...+.|.|+++.. -..+...+..+.....+...++|+|.
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 444442 4567777877642 22344444444443344545788887
No 90
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.00 E-value=1.6e-05 Score=80.70 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=65.4
Q ss_pred HHHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc-hhHHHHHHHhhhhcCCC
Q 011624 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-PAAIDQLVILGEQVGVP 240 (481)
Q Consensus 163 ~~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r-p~aidql~~~~~~~gv~ 240 (481)
..|..+++ ++.. +..++.+.|++|+||||++..++..+.+.|.+|++++++.-. +. ++...|+.
T Consensus 47 ~~LD~~Lg~GGl~-------~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-------~a~~lG~~ 112 (349)
T 2zr9_A 47 ISLDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-------YAKKLGVD 112 (349)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCC
T ss_pred HHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-------HHHHcCCC
Confidence 35677777 5543 457999999999999999999999999899999999998532 22 12333432
Q ss_pred eecC--CCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCcc
Q 011624 241 VYTA--GTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 241 v~~~--~~~~~~~~~l~~~l~~~-~~~~~D~VIIDt~G~~~ 278 (481)
.-.. .......+.+ +.+..+ ...++|+||||.+..+.
T Consensus 113 ~~~l~i~~~~~~e~~l-~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 TDSLLVSQPDTGEQAL-EIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GGGCEEECCSSHHHHH-HHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHeEEecCCCHHHHH-HHHHHHHhcCCCCEEEEcChHhhc
Confidence 1110 0112233322 333322 23569999999987654
No 91
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.00 E-value=6.8e-06 Score=90.04 Aligned_cols=137 Identities=24% Similarity=0.265 Sum_probs=80.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~---~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
|++.|+.++||||++-+|.++-.. .| +|- +.+.+ -++. .....-|+.+......+ .
T Consensus 5 i~IiaHvD~GKTTL~e~LL~~~G~i~~~g-~v~--~g~~~-~D~~----~~EreRGITI~s~~~~~-------------~ 63 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTESLLYNSGAITELG-SVD--KGTTR-TDNT----LLERQRGITIQTGITSF-------------Q 63 (638)
T ss_dssp CEEECCSTTSSHHHHHHHHHHHTCCSSCS-SCC--CSCCS-TTCS----TTHHHHSSCSSCCCCCC-------------B
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccc-ccc--cCCcc-cCCc----HHHHhCCCcEEeeeEEE-------------E
Confidence 678899999999999998754431 11 110 11111 1110 01112244443322211 2
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCC-C
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD-S 336 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~-~ 336 (481)
++++.+.||||||..+ +..|+...++++ |.+++|+||..| | ....++..+ ++++ -+++||+|.. .
T Consensus 64 ~~~~~iNlIDTPGH~D----F~~Ev~raL~~~--DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~-i~~INKmDr~~a 134 (638)
T 3j25_A 64 WENTKVNIIDTPGHMD----FLAEVYRSLSVL--DGAILLISAKDGVQAQTRILFHALRKM--GIPT-IFFINKIDQNGI 134 (638)
T ss_dssp CSSCBCCCEECCCSSS----THHHHHHHHTTC--SEEECCEESSCTTCSHHHHHHHHHHHH--TCSC-EECCEECCSSSC
T ss_pred ECCEEEEEEECCCcHH----HHHHHHHHHHHh--CEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCe-EEEEeccccccC
Confidence 5788899999999875 667776666654 899999999655 2 233334433 3443 4789999953 3
Q ss_pred chh-HHHHHHHHhCCCe
Q 011624 337 RGG-AALSVKEVSGKPI 352 (481)
Q Consensus 337 ~~g-~~~~~~~~~glPV 352 (481)
... .+..+.+.++.++
T Consensus 135 ~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 135 DLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp CSHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 333 3455666677665
No 92
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.97 E-value=0.00021 Score=71.28 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-----CCCHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-----EVKPSQIAKQ 256 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-----~~~~~~~l~~ 256 (481)
+..+++++|.+|+||||++.++|...+.+|.+|++++++.-.......+ .+...+++...... .......+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~--~~~~~~i~~~~l~~~~~~l~~~~~~~l~~ 144 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRL--IVTAGSINAQKIKAARRDFASEDWGKLSM 144 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHH--HHHHTTCCHHHHHSCHHHHCSSCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCCCHHHHHHHHH
Confidence 4579999999999999999999999998899999999985432222222 22233444311100 0011122334
Q ss_pred HHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc
Q 011624 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (481)
Q Consensus 257 ~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~ 306 (481)
+...+. ...+.+.|+++.. -..+...+..+.....+.+.++|+|..
T Consensus 145 a~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 145 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 444442 4567777877532 223444444444433444448888873
No 93
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.96 E-value=0.00011 Score=81.10 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCCC-chh
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDS-RGG 339 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~~-~~g 339 (481)
.++.+.||||||.... ..+....... .+.+++|+|+..+. .......... .+++ .-+++||+|... ...
T Consensus 75 ~~~~i~liDTPG~~df----~~~~~~~l~~--aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~ 147 (691)
T 1dar_A 75 KDHRINIIDTPGHVDF----TIEVERSMRV--LDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGADLW 147 (691)
T ss_dssp TTEEEEEECCCSSTTC----HHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCCHH
T ss_pred CCeEEEEEECcCccch----HHHHHHHHHH--CCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCCHH
Confidence 4688999999998542 2233223332 48899999995442 1112222111 1233 448899999643 223
Q ss_pred HH-HHHHHHhCCC
Q 011624 340 AA-LSVKEVSGKP 351 (481)
Q Consensus 340 ~~-~~~~~~~glP 351 (481)
.+ ..+...++.+
T Consensus 148 ~~~~~l~~~l~~~ 160 (691)
T 1dar_A 148 LVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 33 4455555654
No 94
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.93 E-value=4.4e-05 Score=76.30 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHHhc----CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccC-CchhHHHHHHHhhh
Q 011624 163 DELVKLMG----GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV-YRPAAIDQLVILGE 235 (481)
Q Consensus 163 ~~L~~~l~----~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~-~rp~aidql~~~~~ 235 (481)
.+|..+|+ ++.. +. ++.+.|++|+||||++..++..+.++ |.+|++||+.- +++.. ++
T Consensus 12 ~~LD~~LGg~~~GGl~-------~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-------a~ 76 (333)
T 3io5_A 12 PMMNIALSGEITGGMQ-------SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-------LR 76 (333)
T ss_dssp HHHHHHHHSSTTCCBC-------SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-------HH
T ss_pred HHHHHHhCCCCCCCCc-------CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-------HH
Confidence 46677777 5443 23 78899999999999999999988876 88999999873 44432 33
Q ss_pred hcCCCeecC--CCCCCHHHHHHHHHHHH---HcCCCcEEEEcCCCCcc
Q 011624 236 QVGVPVYTA--GTEVKPSQIAKQGLEEA---KKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 236 ~~gv~v~~~--~~~~~~~~~l~~~l~~~---~~~~~D~VIIDt~G~~~ 278 (481)
..|++.-+. -...+..+...+.++.+ +...+++||||+...+.
T Consensus 77 ~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 77 SMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 344432110 01223333312333332 44679999999987653
No 95
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.92 E-value=0.00016 Score=80.03 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHH---HHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC---CCCHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYL---KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQG 257 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L---~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~---~~~~~~~l~~~ 257 (481)
|-|+++|+.++||||++-.|.++- .+.|. |- +.+. +.|.+ .....-|+.+..... +...
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~-v~--~~~~----~~D~~-~~E~eRGITI~s~~~s~~~~~~------- 78 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGE-VH--DGAA----TTDWM-VQEQERGITITSAAVTTFWKGS------- 78 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECCT-------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCce-ec--CCCc----cCCCh-HHHHHcCCeEEeeeEEEEeccC-------
Confidence 679999999999999999997543 22231 11 0011 11111 011122332221110 0000
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCC
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKL 332 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKv 332 (481)
....++|-+-||||||..+ +..|+...++++ |.+++|||+..| | ...+++. ..++++ -+++||+
T Consensus 79 --~~~~~~~~iNlIDTPGHvD----F~~Ev~~aLr~~--DgavlvVDaveGV~~qT~~v~~~a~--~~~lp~-i~~iNKi 147 (709)
T 4fn5_A 79 --RGQYDNYRVNVIDTPGHVD----FTIEVERSLRVL--DGAVVVFCGTSGVEPQSETVWRQAN--KYGVPR-IVYVNKM 147 (709)
T ss_dssp --TSCSCCEEEEEECCCSCTT----CHHHHHHHHHHC--SEEEEEEETTTCSCHHHHHHHHHHH--HHTCCE-EEEEECS
T ss_pred --cCCCCCEEEEEEeCCCCcc----cHHHHHHHHHHh--CeEEEEEECCCCCchhHHHHHHHHH--HcCCCe-EEEEccc
Confidence 0011357789999999875 667777777765 899999999655 2 2223333 234443 5889999
Q ss_pred CCC-CchhH-HHHHHHHhCCCe
Q 011624 333 DGD-SRGGA-ALSVKEVSGKPI 352 (481)
Q Consensus 333 D~~-~~~g~-~~~~~~~~glPV 352 (481)
|.. ..... +..+...++..+
T Consensus 148 Dr~~a~~~~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 148 DRQGANFLRVVEQIKKRLGHTP 169 (709)
T ss_dssp SSTTCCHHHHHHHHHHHHCSCE
T ss_pred cccCccHHHHHHHhhhhcccce
Confidence 964 33333 355666666544
No 96
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.92 E-value=3.6e-05 Score=75.26 Aligned_cols=138 Identities=20% Similarity=0.111 Sum_probs=74.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...|+++|.+||||||+...|. |.+.. +... | |+.+...... +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~~~-v~~~---~-------------g~t~~~~~~~-------------~~ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSRQR-VGNW---A-------------GVTVERKEGQ-------------FS 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTCEE-EEEC---T-------------TSSSEEEEEE-------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCCcc-cCCC---C-------------CeeEEEEEEE-------------EE
Confidence 3568889999999999998885 33321 1110 1 1111100000 01
Q ss_pred cCCCcEEEEcCCCCccccH-----HHHHHHHh-hhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDK-----AMMDELKD-VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~-----~~~~el~~-i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..+..+.|+||||...... ..-..+.. ....-.++.+++|+|++...........+...-...-+++||+|...
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1356799999999754321 11111111 11123568899999996654433333333221223558899999533
Q ss_pred ch---hHHHHHHHHhCCCeEEee
Q 011624 337 RG---GAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 337 ~~---g~~~~~~~~~glPV~~ig 356 (481)
.. .....+....|.|+..+.
T Consensus 127 ~~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 127 KQNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp HTTEEECHHHHHHHHTSCEEECC
T ss_pred hhhHHHHHHHHHHhcCCCEEEEE
Confidence 21 234556677899985443
No 97
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.91 E-value=2.8e-05 Score=75.44 Aligned_cols=137 Identities=22% Similarity=0.271 Sum_probs=75.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..|+++|.+||||||+...|. |.+.. +. .+ | |+.+...... +..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~--~~-p-------------g~tv~~~~~~-------------~~~ 49 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALT------GTKQY-VA--NW-P-------------GVTVEKKEGV-------------FTY 49 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TTCEE-EE--EC-T-------------TSCCEEEEEE-------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHH------CCCCc-cc--CC-C-------------CceEEEEEEE-------------EEE
Confidence 468889999999999998885 33322 10 11 1 1111100000 012
Q ss_pred CCCcEEEEcCCCCccccHHHHHH-HH-hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCch---
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDE-LK-DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG--- 338 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~e-l~-~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~--- 338 (481)
.++.+.|+||||..........+ +. .....-.++.+++|+|++...........+...-...-+++||+|.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~ 129 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMK 129 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchH
Confidence 35689999999975432111111 11 12211356889999999665444333333322122356899999963221
Q ss_pred hHHHHHHHHhCCCeEEee
Q 011624 339 GAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 339 g~~~~~~~~~glPV~~ig 356 (481)
.....+....|.|+..+.
T Consensus 130 ~~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 130 IDRYELQKHLGIPVVFTS 147 (258)
T ss_dssp BCHHHHHHHHCSCEEECC
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 124567778899985444
No 98
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.87 E-value=0.0015 Score=68.21 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=79.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHH--HHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~--l~~~ 257 (481)
+..+++++|.+|+||||++.++|...+. .|.+|++++...-....... ..+...+++...... .+.+.+. +..+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R--~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLR--MMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHH--HHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH--HHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 3569999999999999999999998886 58999999998543222222 223344554322211 2333332 2334
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc-----c--h-------H---HHHHHHHHhhh
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-----T--G-------Q---EAAALVTTFNI 320 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~-----~--~-------~---~~~~~~~~f~~ 320 (481)
+..+. ...+.+.|+++.. -..+...+..+..... .-++|+|.. . + + .....++.+..
T Consensus 277 ~~~l~--~~~l~i~d~~~~s--~~~l~~~~~~l~~~~~--~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAk 350 (444)
T 2q6t_A 277 ASRLS--EAPIYIDDTPDLT--LMEVRARARRLVSQNQ--VGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALAR 350 (444)
T ss_dssp HHHHH--TSCEEEECCTTCB--HHHHHHHHHHHHHHSC--CCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHcC--CCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44442 3456666766442 1223333434433222 336777751 1 1 0 11222344455
Q ss_pred cCCeeEEEEcCCC
Q 011624 321 EIGITGAILTKLD 333 (481)
Q Consensus 321 ~~~i~GvIlnKvD 333 (481)
..++..++++.+.
T Consensus 351 e~~v~vi~lsql~ 363 (444)
T 2q6t_A 351 ELGIPIIALSQLS 363 (444)
T ss_dssp HHTSCEEEEEECC
T ss_pred HhCCeEEEEecCC
Confidence 6677777777764
No 99
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00011 Score=66.50 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+...|+++|.+||||||+...|.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578889999999999998875
No 100
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=6.5e-05 Score=74.48 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+...++++|++|+||||+...|. |.++..++..++ . +.....+ ++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~~~---t-----Tr~~~~g--i~------------------- 51 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQ---T-----TRHRIVG--IH------------------- 51 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH------TCSEEECCCCSS---C-----CSSCEEE--EE-------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------CCCccccCCCCC---c-----ceeeEEE--EE-------------------
Confidence 34589999999999999998886 566654332221 0 0000011 11
Q ss_pred HcCCCcEEEEcCCCCc-cccHHHHHHHHhh-hhcc-CCceEEEEEeCcch-HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRL-QIDKAMMDELKDV-KRVL-NPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~-~~d~~~~~el~~i-~~~~-~p~~vvLVvda~~~-~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
...++.++++||||.. .....+-..+... ...+ ..+.+++|+|+..- ......++.....-.+.-+++||+|...
T Consensus 52 ~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 52 TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred EECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 1245679999999975 2111121122111 1111 24667888998321 1111222222221234558889999765
No 101
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.83 E-value=0.00017 Score=72.90 Aligned_cols=128 Identities=9% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
..|.+++++ .. +..+++++|.+|+||||++.++|..++..|.+|++++.+.-....... ..+...+++..
T Consensus 34 ~~LD~~~gG-l~-------~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~R--lls~~~~v~~~ 103 (338)
T 4a1f_A 34 VQLDNYTSG-FN-------KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALR--ALSDLTSINMH 103 (338)
T ss_dssp HHHHHHHCS-BC-------TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHH--HHHHHHCCCHH
T ss_pred hHHHHHhcC-CC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHH--HHHHhhCCCHH
Confidence 355666653 22 356999999999999999999999999899999999998653332222 22333344432
Q ss_pred cCC-CCCCHHHH--HHHHHHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 243 TAG-TEVKPSQI--AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 243 ~~~-~~~~~~~~--l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
... ..+...+. +..+...+. +..+.|.|+|+.. -..+.+.+..+.... +..-++|||.
T Consensus 104 ~l~~g~Ls~~e~~~l~~a~~~l~--~~~l~I~d~~~~s--i~~i~~~ir~l~~~~-gg~~lIVIDy 164 (338)
T 4a1f_A 104 DLESGRLDDDQWENLAKCFDHLS--QKKLFFYDKSYVR--IEQIRLQLRKLKSQH-KELGIAFIDY 164 (338)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHH--HSCEEEECCTTCC--HHHHHHHHHHHHHHC-TTEEEEEEEE
T ss_pred HHhcCCCCHHHHHHHHHHHHHHh--cCCeEEeCCCCCc--HHHHHHHHHHHHHhc-CCCCEEEEec
Confidence 111 12333332 233444442 3467788887642 123333343333321 1345888886
No 102
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.83 E-value=1.6e-05 Score=85.07 Aligned_cols=146 Identities=19% Similarity=0.222 Sum_probs=74.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEec-cCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~---~~G~kVlLId~-D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
.+.|+++|.+|+||||++.+|..+-. +.|. ++. +..+....+.. ......|+.+.....
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~----v~~~~~~~~~~~d~~-~~e~~~GiTi~~~~~------------ 75 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGT----IKSRKAARHATSDWM-ELEKQRGISVTTSVM------------ 75 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHH----HHTC----CCHHHHH-HHHHHHCCSSSSSEE------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCccccee----eeccccccceecccc-hhhhcCCeeEEEeEE------------
Confidence 46889999999999999999863211 0000 000 00000111111 111122333221100
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
.+...++.+.||||||...... +...... ..+.+++|+|+..+. .......... .++ ..-+++||+|..
T Consensus 76 -~~~~~~~~i~liDTPG~~df~~----~~~~~l~--~aD~allVvDa~~g~~~~t~~~~~~~~~~~i-PiivviNK~Dl~ 147 (528)
T 3tr5_A 76 -QFPYKDYLINLLDTPGHADFTE----DTYRTLT--AVDSALMVIDAAKGVEPRTIKLMEVCRLRHT-PIMTFINKMDRD 147 (528)
T ss_dssp -EEEETTEEEEEECCCCSTTCCH----HHHHGGG--GCSEEEEEEETTTCSCHHHHHHHHHHHTTTC-CEEEEEECTTSC
T ss_pred -EEEeCCEEEEEEECCCchhHHH----HHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC-CEEEEEeCCCCc
Confidence 0113567899999999764322 2222222 348899999996542 2222222222 123 345889999964
Q ss_pred C-ch-hHHHHHHHHhCCCeE
Q 011624 336 S-RG-GAALSVKEVSGKPIK 353 (481)
Q Consensus 336 ~-~~-g~~~~~~~~~glPV~ 353 (481)
. .. ..+..+....+.++.
T Consensus 148 ~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 148 TRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CSCHHHHHHHHHHHHCCEEE
T ss_pred cccHHHHHHHHHHhhCCCce
Confidence 3 22 334556667776543
No 103
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=5.7e-05 Score=71.19 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 221 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~------~G~kVlLId~D~ 221 (481)
..|.++++++.. ++.+++++|++|+||||++..|+..... .+.+|++++.+.
T Consensus 11 ~~LD~~l~ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 11 KELDKLLQGGIE-------TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhhcCCCc-------CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 356677765443 4569999999999999999999975332 367899998875
No 104
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.82 E-value=5.3e-05 Score=74.17 Aligned_cols=137 Identities=21% Similarity=0.108 Sum_probs=73.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...|+++|.+||||||+...|. |.+.. .+ ...|+.+...... +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~--------v~---------~~pg~tv~~~~~~-------------~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR--------VG---------NWPGVTVERKSGL-------------VK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC--------CC---------SSSCCCCSCEEEE-------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc--------cc---------CCCCCcEEEEEEE-------------Ee
Confidence 3568899999999999998885 32210 00 0112211100000 01
Q ss_pred cCCCcEEEEcCCCCccccHHHH-HHHHh-hhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCch--
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMM-DELKD-VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG-- 338 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~-~el~~-i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~-- 338 (481)
. +.++.|+||||......... ..+.. ....-.++.+++|+|++...........+...-...-+++||+|.....
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc
Confidence 2 56799999999754321101 11111 1111246889999999765443333333322112345889999963221
Q ss_pred -hHHHHHHHHhCCCeEEee
Q 011624 339 -GAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 339 -g~~~~~~~~~glPV~~ig 356 (481)
.....+....|.|+..+.
T Consensus 126 ~~~~~~l~~~lg~~vi~~S 144 (272)
T 3b1v_A 126 KINVDKLSYHLGVPVVATS 144 (272)
T ss_dssp CCCHHHHHHHHTSCEEECB
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 233556677899985444
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.82 E-value=6.5e-05 Score=68.04 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=54.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..+++.|++|+||||++..++..+. ..|.+|.++++..+ .+.+........ .. ..+..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~---------~~------~~~~~~ 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL----IFRLKHLMDEGK---------DT------KFLKTV 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH----HHHHHHHHHHTC---------CS------HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH----HHHHHHHhcCch---------HH------HHHHHh
Confidence 56889999999999999999999887 77988887765432 222211111000 00 223333
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHh
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKD 289 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~ 289 (481)
.+++++|+|-++....+......+..
T Consensus 99 --~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp --HTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred --cCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 46899999999854444443344433
No 106
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.78 E-value=6.1e-05 Score=74.33 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCcccc---------HHHHHHHHhhhhccCCceEEEEEeC-cch---HHHHHHHHHhhhcCCeeEEEEcC
Q 011624 265 NVDVVIVDTAGRLQID---------KAMMDELKDVKRVLNPTEVLLVVDA-MTG---QEAAALVTTFNIEIGITGAILTK 331 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d---------~~~~~el~~i~~~~~p~~vvLVvda-~~~---~~~~~~~~~f~~~~~i~GvIlnK 331 (481)
.++++|+||||..... ..+........ ..++.+++|+|+ ..+ .+....++.+...-...-+|+||
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK 207 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcC
Confidence 4689999999975311 11222221122 235778888886 322 22234444443322335588999
Q ss_pred CCCCCch
Q 011624 332 LDGDSRG 338 (481)
Q Consensus 332 vD~~~~~ 338 (481)
+|.....
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9975443
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.77 E-value=4.7e-05 Score=75.60 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..++++|.+||||||++..|. |.++..++..+ .. +.....+ ++ ..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~~---~t-----Tr~~i~~--i~-------------------~~ 52 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISPRP---QT-----TRKRLRG--IL-------------------TE 52 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSS---CC-----CCSCEEE--EE-------------------EE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCceeeecCCC---Cc-----eeEEEEE--EE-------------------Ee
Confidence 468899999999999998886 44443221111 10 0000000 00 12
Q ss_pred CCCcEEEEcCCCCccccHH----HHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhc--CCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKA----MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIE--IGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~----~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~--~~i~GvIlnKvD~~ 335 (481)
.++.++|+||||....... +....... ....+.+++|+|++.+ ............. -...-+|+||+|..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~--l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEA--LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHH--TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHH--HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 4678999999997643211 11221111 2245889999998543 1111112222221 12356899999975
Q ss_pred Cc
Q 011624 336 SR 337 (481)
Q Consensus 336 ~~ 337 (481)
..
T Consensus 131 ~~ 132 (301)
T 1wf3_A 131 KY 132 (301)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=4e-06 Score=77.75 Aligned_cols=27 Identities=44% Similarity=0.652 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQG 211 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G 211 (481)
+++++|++|+||||+...|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 688999999999999999999888667
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.73 E-value=7e-05 Score=71.24 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe--ccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId--~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
+..+++++|+.|+||||.+..++..+..+|.+|+++. .|. | +. . ......|+...... .....++. +.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~-~---~i~srlG~~~~~~~-~~~~~~i~-~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI-R---NIQSRTGTSLPSVE-VESAPEIL-NYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC-S---SCCCCCCCSSCCEE-ESSTHHHH-HHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH-H---HHHHhcCCCccccc-cCCHHHHH-HHHH
Confidence 4679999999999999999999999999999999883 332 2 21 1 12333444322111 11222222 2221
Q ss_pred H-HHcCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 260 E-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 260 ~-~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
. .....+|+|+||-.-.+. ......+..+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~ 114 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFD--DRICEVANILAE 114 (223)
T ss_dssp STTSCTTCCEEEECSGGGSC--THHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEecCccCc--HHHHHHHHHHHh
Confidence 1 112459999999986653 234445544443
No 110
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.72 E-value=0.00011 Score=69.70 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCccc---cHHHHHHHHhhhhc--cCCceEEEEEeCcc--hH--HHHHHH-HHhhhc-CCeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAMT--GQ--EAAALV-TTFNIE-IGITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~--~~p~~vvLVvda~~--~~--~~~~~~-~~f~~~-~~i~GvIlnKv 332 (481)
.+..+.|+||||.... +.....++...... ..++.+++|+|+.. .. .....+ ..|... ....-+|+||+
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 3557899999997643 12223344333322 24588899999732 11 122222 223221 12456899999
Q ss_pred CCCCc--h--------hHHHHHHHHhCCCe
Q 011624 333 DGDSR--G--------GAALSVKEVSGKPI 352 (481)
Q Consensus 333 D~~~~--~--------g~~~~~~~~~glPV 352 (481)
|.... . ..+..+.+.++.++
T Consensus 156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~ 185 (239)
T 3lxx_A 156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRY 185 (239)
T ss_dssp GGC------------CHHHHHHHHHHSSSE
T ss_pred ccCCcccHHHHHHhchHHHHHHHHHcCCEE
Confidence 95322 1 13445556666654
No 111
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.70 E-value=0.00021 Score=73.69 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=67.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh-HHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~-aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
...|+++|..|+||||++..|...+.+.|... .|... ..+.. ......|+.+..... .+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~~~~~~~d~~-~~e~~~GiTi~~~~~-------------~~ 70 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EVKDYGDIDKA-PEERARGITINTAHV-------------EY 70 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CCCCHHHHSCS-HHHHHHTCCCSCEEE-------------EE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cccchhhccCC-HHHHHcCCCEEeeee-------------Ee
Confidence 35688899999999999999988777766420 11110 11111 001112322211000 00
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
...++.+.|+||||.... ...+.... ...+.+++|+|+..+ ....+.+.... ..++..-+++||+|...
T Consensus 71 ~~~~~~~~iiDtpG~~~f----~~~~~~~~--~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADY----IKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGG----HHHHHHHH--TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred ccCCeEEEEEECCChHHH----HHHHHHHH--HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 124678999999997542 22222222 245889999999544 12222222111 12231347899999753
No 112
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.69 E-value=6.4e-05 Score=68.74 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=36.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..+++++|++|+||||++..|+..+..+|++|..+..|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3588999999999999999999999999999999998763
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.69 E-value=0.00031 Score=67.55 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=35.2
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~ 225 (481)
...|.+|+++|++|+||||++..|+..+ +..+.+++.|.+|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 3467899999999999999999998765 345678999998743
No 114
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.68 E-value=0.00028 Score=61.35 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhh--cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNI--EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~--~~~i~GvIlnKvD~~ 335 (481)
..+++.++||||...... ..... .. ..+.+++|+|.....+. . ..+..+.. ..+ .-+|+||+|..
T Consensus 49 ~~~~~~~~D~~G~~~~~~-~~~~~---~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~ 121 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSA-MRDQY---MR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLA 121 (166)
T ss_dssp EEEEEEEEECCCCSSCCH-HHHHH---HH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS
T ss_pred EEEEEEEEECCCchhhhH-HHHHh---hc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhh
Confidence 356789999999753222 22211 11 23778999998654322 1 22222222 233 45899999954
Q ss_pred C---chhHHHHHHHHhCCCeEEe
Q 011624 336 S---RGGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 336 ~---~~g~~~~~~~~~glPV~~i 355 (481)
. ....+..++...+.|+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 122 ARTVESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEEE
T ss_pred hcccCHHHHHHHHHHcCCeEEEe
Confidence 3 2344466677778887433
No 115
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.68 E-value=0.00012 Score=65.05 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCccccHH-HHHHHH-hhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCc---hh
Q 011624 265 NVDVVIVDTAGRLQIDKA-MMDELK-DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR---GG 339 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~-~~~el~-~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~---~g 339 (481)
+..+.++||||....... ....+. .......++.+++|+|+............+...-...-+|.||+|.... ..
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 128 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI 128 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhh
Confidence 456899999997543110 001111 1111124688899999965443333333332211234588999995321 11
Q ss_pred HHHHHHHHhCCCe
Q 011624 340 AALSVKEVSGKPI 352 (481)
Q Consensus 340 ~~~~~~~~~glPV 352 (481)
....++...+.|+
T Consensus 129 ~~~~~~~~~~~~~ 141 (165)
T 2wji_A 129 DVDKLEKILGVKV 141 (165)
T ss_dssp CHHHHHHHHTSCE
T ss_pred HHHHHHHHhCCCE
Confidence 2345566667766
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.67 E-value=5.3e-05 Score=74.67 Aligned_cols=65 Identities=25% Similarity=0.465 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 150 GVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 150 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+++ +++.+++.+.+..+++... ...+|.+|+++|++||||||++..|+..+. .....|++|.+|
T Consensus 6 ~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 6 NFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 3455 5667788888888887532 234688999999999999999999986542 245778999876
No 117
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.65 E-value=0.00054 Score=69.35 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=53.9
Q ss_pred HCCCChHHHHHHHHHHHHHHhhccccCCCChhHHHHHHH---------HHHHHHHhcCccccccccCCCCEEEEEEcCCC
Q 011624 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV---------RDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (481)
Q Consensus 123 ~~dv~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l---------~~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~G 193 (481)
..+++..-+.++++...+.... .+......+.+.. ...|..+|+++.. +..++.++|++|
T Consensus 73 ~~~~s~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~isTG~~~LD~lL~ggi~-------~G~i~~I~G~~G 141 (349)
T 1pzn_A 73 VAGISEGTALKIIQAARKAANL----GTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIE-------TQAITEVFGEFG 141 (349)
T ss_dssp HHCCCHHHHHHHHHHHHHHCST----TSCEEHHHHHHHHHTCCEECCSCHHHHHHHTSSEE-------SSEEEEEEESTT
T ss_pred hcCCCHHHHHHHHHHHhhhccc----cCCccHHHHHhhhccCCeecCCCHHHHHHhcCCCC-------CCeEEEEECCCC
Confidence 3566666666666665544311 0112222222111 1346666665443 568999999999
Q ss_pred CCHHHHHHHHHHHHHH---c---CCeEEEEeccC
Q 011624 194 VGKTTVSAKLANYLKK---Q---GKSCMLVAGDV 221 (481)
Q Consensus 194 vGKTTta~~LA~~L~~---~---G~kVlLId~D~ 221 (481)
+||||++..++..+.. . |-+|++|+...
T Consensus 142 sGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 142 SGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 9999999999887642 2 35888888764
No 118
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00017 Score=68.07 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=40.5
Q ss_pred HHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeccCC
Q 011624 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVY 222 (481)
Q Consensus 164 ~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L-~~~G~kVlLId~D~~ 222 (481)
.|.++++++.. ++.+++++|.+|+||||++.++|... .+.|.+|++++.+.-
T Consensus 18 ~LD~~l~GGl~-------~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 18 GFDELIEGGFP-------EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTGGGTTTSEE-------TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HHHHhhcCCCC-------CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 34555655443 45799999999999999999998764 566899999998854
No 119
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.63 E-value=0.00017 Score=69.32 Aligned_cols=89 Identities=18% Similarity=0.097 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCccccHH----HHHHHHhhh--hccCCceEEEEEeCcch-H---HHHHHHHH-hhhc--CCeeEEEEc
Q 011624 264 KNVDVVIVDTAGRLQIDKA----MMDELKDVK--RVLNPTEVLLVVDAMTG-Q---EAAALVTT-FNIE--IGITGAILT 330 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~----~~~el~~i~--~~~~p~~vvLVvda~~~-~---~~~~~~~~-f~~~--~~i~GvIln 330 (481)
.+..++|+||||....... ...++.... ....++.+++|+|+..- . .....+.. |... -...-++.|
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 4567999999998543221 122222221 12356889999998421 1 22333332 3221 123557889
Q ss_pred CCCCCCc-h---------hHHHHHHHHhCCCe
Q 011624 331 KLDGDSR-G---------GAALSVKEVSGKPI 352 (481)
Q Consensus 331 KvD~~~~-~---------g~~~~~~~~~glPV 352 (481)
|.|.... . ..+..+.+.+|.++
T Consensus 148 K~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 148 KEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp GGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 9996432 1 22455666667665
No 120
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.63 E-value=0.00065 Score=66.51 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~ 221 (481)
+..+++++|++|+||||++..|+..+... |.+|++++.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 45699999999999999999999988765 88999998875
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.63 E-value=0.00019 Score=67.88 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~ 222 (481)
++.++++.|++|+||||++..|+.... ..+..+.+++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 457999999999999999999986554 66788888887654
No 122
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.63 E-value=0.0002 Score=62.42 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcchH-HH-HHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EA-AALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~~~-~~-~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
+..+.|+||||.... ............ ...+.+++|+|+.... .. ........ ... ..-+|.||+|....
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVLFAVDGRAELTQADYEVAEYLRRKGK-PVILVATKVDDPKH 123 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTC-CEEEEEECCCSGGG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEEEEEECCCcccHhHHHHHHHHHhcCC-CEEEEEECcccccc
Confidence 457899999997642 111222222122 2357889999985431 11 11112121 223 34689999997543
No 123
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.63 E-value=0.00027 Score=62.63 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---H---HHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---A---LVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~---~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.......... ... ..+.+++|+|+....+.. . .+......-...-+|+||+|....
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~----~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRS----YYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHH----HHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCChHhhhhHHH----Hhc--cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 467899999996432221111 111 347889999996553221 1 122222112235588999996422
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (179)
T 1z0f_A 137 DVTYEEAKQFAEENGLLF 154 (179)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 234455666667766
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.61 E-value=0.00024 Score=66.29 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+..++++|++|+||||++..++..+...|.++..++++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4578899999999999999999999988999999988654
No 125
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.61 E-value=0.00011 Score=70.45 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
++.-|+++|.+||||||++..|.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 35678889999999999998885
No 126
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.60 E-value=6.9e-05 Score=68.24 Aligned_cols=43 Identities=40% Similarity=0.661 Sum_probs=38.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.++.+|+++|.+|+||||++..|+..|...|.+|.+++.|..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3578999999999999999999999999999999999887543
No 127
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.59 E-value=0.00068 Score=71.79 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~ 222 (481)
+..+++++|.+|+||||++..+|..++.+ |.+|++++.+.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 45799999999999999999999999876 999999999864
No 128
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00024 Score=63.91 Aligned_cols=133 Identities=19% Similarity=0.166 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++..++++|.+||||||+...|+ |.+.. +. . .|+ ..+...... .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~--~-~~~-----------~t~~~~~~~---------------~ 49 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT------GENVY-IG--N-WPG-----------VTVEKKEGE---------------F 49 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH------TTCEE-EE--E-CTT-----------SCCEEEEEE---------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCcc-cc--C-CCC-----------eeccceEEE---------------E
Confidence 34578899999999999998886 22211 00 0 011 011110000 0
Q ss_pred HcCCCcEEEEcCCCCcccc-----HHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d-----~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
...++.+.|+||||..... ..+... ......++.+++|+|+................-...-+|.||+|...
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 50 EYNGEKFKVVDLPGVYSLTANSIDEIIARD---YIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp EETTEEEEEEECCCCSCCSSSSHHHHHHHH---HHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred EeCCcEEEEEECCCcCccccccHHHHHHHH---HHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 1135678999999975431 111111 11112357789999986544333333333221123457899999532
Q ss_pred c---hhHHHHHHHHhCCCeE
Q 011624 337 R---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 ~---~g~~~~~~~~~glPV~ 353 (481)
. ...+..+....+.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 127 SLGIEIDVDKLEKILGVKVV 146 (188)
T ss_dssp HTTCCCCHHHHHHHHTSCEE
T ss_pred cccchHHHHHHHHHhCCCeE
Confidence 1 1234556666777763
No 129
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00025 Score=66.03 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=38.3
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 221 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~------~G~kVlLId~D~ 221 (481)
..|..+++++.. +..+++++|++|+||||++..|+..+.. .+..+++++.+.
T Consensus 12 ~~LD~~l~ggi~-------~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 12 KSLDKLLGGGIE-------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHHHTTSSEE-------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHhHhcCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 355666755443 4679999999999999999999875543 245677787764
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.57 E-value=0.00071 Score=71.43 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHH--Hh-hhhccCCceEEEEEeCcchH------HHHHHHHHhhhcCCeeEEEEcCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDEL--KD-VKRVLNPTEVLLVVDAMTGQ------EAAALVTTFNIEIGITGAILTKLDG 334 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el--~~-i~~~~~p~~vvLVvda~~~~------~~~~~~~~f~~~~~i~GvIlnKvD~ 334 (481)
.++.+.|+||||..... ...... .. ......++.+++|+|++... ........+. . ...-+|+||+|.
T Consensus 279 ~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-~piIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A-AKFLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-SEEEEEEECTTS
T ss_pred CCeEEEEEECCCCCcch-hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-CCEEEEEECcCC
Confidence 45679999999975321 111111 11 11223468899999985432 2223333333 2 235588999997
Q ss_pred CCc
Q 011624 335 DSR 337 (481)
Q Consensus 335 ~~~ 337 (481)
...
T Consensus 356 ~~~ 358 (476)
T 3gee_A 356 AAN 358 (476)
T ss_dssp CTT
T ss_pred CCc
Confidence 544
No 131
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.57 E-value=0.00027 Score=62.07 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HH---HHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AA---LVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~---~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||........... . ...+.+++|+|+....+. .. .+......-...-+|+||+|....
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~----~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAY----Y--RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHH----H--TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred EEEEEEEeCCCChhhhhhHHHH----h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc
Confidence 4578999999964321111111 1 134778999998654322 11 122221112234589999996322
Q ss_pred --hhHHHHHHHHhCCCeE
Q 011624 338 --GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 --~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 125 VTADQGEALAKELGIPFI 142 (170)
T ss_dssp SCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHcCCeEE
Confidence 2344556667787773
No 132
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.57 E-value=0.00032 Score=72.15 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchh-HHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~-aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
.-|+++|..|+||||++..|.....+.|.. .|... ..+.. ......|+.+-.... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~-------~~~~~~~~d~~-~~e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGA-------KFKKYEEIDNA-PEERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSB-------CCCCHHHHHSC-CEEEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCcc-------ccchhhhhhcC-HHHHhcCcEEEeeeE-------------Eec
Confidence 357889999999999999998877666642 11111 11111 001112222211000 011
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
..++.+.|+||||... ....+... ....+.+++|+|+..+ ....+.+.... ..++..-+++||+|...
T Consensus 63 ~~~~~~~iiDtpG~~~----f~~~~~~~--~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHAD----YVKNMITG--TAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHHH----HHHHHHHT--SSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChHH----HHHHHHhh--HhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 2467899999999642 33333222 2346889999999653 11122221111 12332247899999753
No 133
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.54 E-value=0.00012 Score=64.19 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=45.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HH---HHHHhhhcCCeeEEEEcCCCCCC--
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AA---LVTTFNIEIGITGAILTKLDGDS-- 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~---~~~~f~~~~~i~GvIlnKvD~~~-- 336 (481)
.+.+.|+||||...... .... .. ...+.+++|+|+....+. .. .+.......+ .-+|+||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDA-ITKA---YY--RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGGTTC-CCHH---HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEcCCCcHhHHH-HHHH---Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence 46799999999643211 1111 11 134788999998654322 11 1222222333 458999999532
Q ss_pred --chhHHHHHHHHhCCCeE
Q 011624 337 --RGGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 --~~g~~~~~~~~~glPV~ 353 (481)
....+..++...+.|+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 23444566667777763
No 134
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.53 E-value=0.00047 Score=62.12 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhhcC-CeeEEEEcCCCCCC---ch
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEI-GITGAILTKLDGDS---RG 338 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~~~-~i~GvIlnKvD~~~---~~ 338 (481)
+.+.|+||||...... .... .. ...+.+++|+|+....... ..+..+.... ...-+|+||+|... ..
T Consensus 93 ~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS-IVPL---YY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp EEEEEEECTTGGGCTT-THHH---HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred eEEEEEECCCcHHHHH-HHHH---Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence 6789999999643221 1111 11 1347889999996653322 2222222111 34568999999322 12
Q ss_pred hHHHHHHHHhCCCeE
Q 011624 339 GAALSVKEVSGKPIK 353 (481)
Q Consensus 339 g~~~~~~~~~glPV~ 353 (481)
..+...+...++|+.
T Consensus 167 ~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 167 LEVQKYAQDNNLLFI 181 (208)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 444556666677663
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.52 E-value=0.0012 Score=64.15 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----------GKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~----------G~kVlLId~D~~ 222 (481)
+..+++++|++|+||||++..++..+... +.+|++++.+-.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 45799999999999999999999876642 467888887653
No 136
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.51 E-value=0.00024 Score=64.26 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... .... .. ...+.+++|+|+....+. . ..+..+...-...-+|+||+|....
T Consensus 64 ~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRT-ITSS---YY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEEEEEEECCSGGGCT-THHH---HH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEECCCcHhhhh-hHHH---HH--hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 36789999999643221 1111 11 234788999998654322 1 1222222112234588999996432
Q ss_pred ---hhHHHHHHHHhCCCeEEe
Q 011624 338 ---GGAALSVKEVSGKPIKLV 355 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~~i 355 (481)
...+..++...+.|+..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 138 VVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp CSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCHHHHHHHHHHcCCcEEEE
Confidence 234456677778887433
No 137
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.50 E-value=0.00037 Score=62.05 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh---cCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI---EIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~---~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... .... .. ...+.+++|+|+....+. ......+.. .-...-+|+||+|....
T Consensus 60 ~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHS-LAPM---YY--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEEEEEEECCCSGGGGG-GTHH---HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCCChhhhh-hhHH---Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 46789999999643211 1111 11 134788999998655332 222222221 12234588999996422
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+...+...+.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 134 KVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp CSCHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHcCCEEE
Confidence 2344556666777663
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.49 E-value=0.00043 Score=64.40 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC--chhHHHHHHHhhhhcCCCeecCCCCC--CH------H
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY--RPAAIDQLVILGEQVGVPVYTAGTEV--KP------S 251 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~--rp~aidql~~~~~~~gv~v~~~~~~~--~~------~ 251 (481)
++.|++++|+| .||||.+..+|.....+|++|+++....- ..+-.+-+. ..++.+...+... .. .
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHH
Confidence 45667666655 99999999999999999999999966542 222222221 2234444333211 11 1
Q ss_pred HHHHHHHHH----HHcCCCcEEEEcCCCC
Q 011624 252 QIAKQGLEE----AKKKNVDVVIVDTAGR 276 (481)
Q Consensus 252 ~~l~~~l~~----~~~~~~D~VIIDt~G~ 276 (481)
..+...+.. +....||+||+|-.+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 122333333 3346799999999743
No 139
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.49 E-value=0.00093 Score=59.17 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=69.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
..-|+++|.+||||||++..|... .+... +....+........... .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~--------------~~~~~-------~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE--------------TFGKQ-------YKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG--------------GTTHH-------HHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC--------------cCCCC-------CCCceeEEEEEEEEEeC------------C
Confidence 345788899999999999887521 12111 11122322221100000 0
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhh---cCCeeEEEEcCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNI---EIGITGAILTKLD 333 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~---~~~i~GvIlnKvD 333 (481)
...+.+.|+||||...... .... .. ...+.+++|+|++...+. . ..+..+.. .....-+|.||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGK-MLDK---YI--YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCT-THHH---HH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccc-hhhH---HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 0236789999999753211 1111 11 234788999998655332 1 12222211 2333568899999
Q ss_pred CCCc----hhHHHHHHHHhCCCeEE
Q 011624 334 GDSR----GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 334 ~~~~----~g~~~~~~~~~glPV~~ 354 (481)
.... ...+..++...++|+..
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred cccccccCHHHHHHHHHHcCCcEEE
Confidence 6431 23445566667777643
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.49 E-value=0.00027 Score=68.53 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcc--h-H---HHHHHHH-HhhhcC-CeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT--G-Q---EAAALVT-TFNIEI-GITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~--~-~---~~~~~~~-~f~~~~-~i~GvIlnKv 332 (481)
.++.+.|+||||.... +......+........++.+++|+|... . . .....+. .+.... ...-+|+||+
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 4567999999998543 2334444433322223577888866521 1 1 1222222 222221 2345899999
Q ss_pred CCC
Q 011624 333 DGD 335 (481)
Q Consensus 333 D~~ 335 (481)
|..
T Consensus 165 Dl~ 167 (270)
T 1h65_A 165 QFS 167 (270)
T ss_dssp SCC
T ss_pred ccC
Confidence 964
No 141
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.49 E-value=0.004 Score=71.81 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=63.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~ 263 (481)
..|+++|..++||||++..|.....+.|.... ..|. ..+.+ ......|+.+..... .+..
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f----~~~a--~lD~~-~~ErerGITIdva~v-------------~f~~ 356 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA----RAFD--QIDNA-PEEKARGITINTSHV-------------EYDT 356 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSCE-------------EEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhcccccccc----cccc--ccccc-cccccCceeEEEEEE-------------EEcC
Confidence 46788999999999999999876655553210 0010 01111 111112222211000 0012
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||... ....+.. .....+.++||+|+..+ + +....+... .++..-+++||+|...
T Consensus 357 ~~~kI~IIDTPGHed----F~~~mi~--gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHAD----YVKNMIT--GAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp SSCEEEEEECCCHHH----HHHHHHH--TSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCC
T ss_pred CCEEEEEEECCChHH----HHHHHHH--HHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeeccccc
Confidence 457899999999642 3333322 23346889999999544 2 222222222 2332347899999754
No 142
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.48 E-value=0.00023 Score=62.48 Aligned_cols=82 Identities=13% Similarity=0.012 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||..... ..... .. ...+.+++|+|+....... ..+..+.....+.-+|.||+|....
T Consensus 54 ~~~~~~~Dt~G~~~~~-~~~~~---~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFR-ALAPM---YY--RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEEECCSGGGG-GGTHH---HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEEcCCCchhhh-cccHh---hC--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 4678999999974321 11111 11 1347889999986543221 2222222222234577899996432
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 128 ~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 128 EVMERDAKDYADSIHAIF 145 (170)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233445556666665
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.48 E-value=0.00011 Score=77.02 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=55.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
...|+++|.+||||||+...|. |.+...+... |+. +.. ..... +.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~---~g~-----t~~----~~~~~-----------------~~ 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGV-----TRD----RIYSS-----------------AE 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC-----------------------CEEEE-----------------CT
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCCC---CCc-----cee----EEEEE-----------------EE
Confidence 3478899999999999998885 4443322111 110 000 00000 01
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhh--ccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKR--VLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~--~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+.+..+.|+||||....+.....++..... .-.++.+++|+|+..+ ......+......-...-+|+||+|..
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 245679999999965322111222211111 1135889999998543 222222232222222345889999964
No 144
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.48 E-value=0.00022 Score=68.86 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCccc---cHHHHHHHHhhhhccCCceEEEEEeCcc----hH--HHHHHHHH-hhhcC-CeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT----GQ--EAAALVTT-FNIEI-GITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~---d~~~~~el~~i~~~~~p~~vvLVvda~~----~~--~~~~~~~~-f~~~~-~i~GvIlnKv 332 (481)
.+..+.|+||||.... .......+........++.+++|++... .. .....+.. +.... ...-+|+||+
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 4567999999997543 2344444444443334567788865421 11 23333332 22222 2345889999
Q ss_pred CCC
Q 011624 333 DGD 335 (481)
Q Consensus 333 D~~ 335 (481)
|..
T Consensus 162 Dl~ 164 (262)
T 3def_A 162 QFS 164 (262)
T ss_dssp TCC
T ss_pred ccC
Confidence 963
No 145
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.47 E-value=0.00053 Score=61.70 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch-----HHHHHHHHHhh-------hcCCeeEEEEcC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFN-------IEIGITGAILTK 331 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~-----~~~~~~~~~f~-------~~~~i~GvIlnK 331 (481)
..+.+.|+||||...... .... .. ...+.+++|+|+... .+....+..+- ... ..-+|.||
T Consensus 72 ~~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~-piilv~NK 144 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNA-SRKL---IL--RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDV-PIVIQVNK 144 (198)
T ss_dssp CEEEEEEEECCSCCSCSH-HHHH---HT--TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSS-CEEEEEEC
T ss_pred CceEEEEEeCCChHHHHH-HHHH---HH--hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCC-CEEEEEEc
Confidence 356789999999653221 1111 11 235788999999732 12222222221 222 34588999
Q ss_pred CCCCCc--hhHHHHHHHHhCC-Ce
Q 011624 332 LDGDSR--GGAALSVKEVSGK-PI 352 (481)
Q Consensus 332 vD~~~~--~g~~~~~~~~~gl-PV 352 (481)
+|.... ...+...+...+. ++
T Consensus 145 ~Dl~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 145 RDLPDALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp TTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred hhcccccCHHHHHHHHHhcCCceE
Confidence 996443 3334445544555 54
No 146
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=63.67 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHHhhhcC--CeeEEEEcCCCCCCc--
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEI--GITGAILTKLDGDSR-- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~f~~~~--~i~GvIlnKvD~~~~-- 337 (481)
.+.+.|+||||...... . .. ......+.+++|+|+....+... ....+.... ...-+|+||+|....
T Consensus 57 ~~~~~i~Dt~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRT-I---TS--TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EEEEEEEEETTGGGCSS-C---CG--GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC
T ss_pred EEEEEEEcCCCchhhhh-h---HH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc
Confidence 36789999999542210 0 00 01123478899999966543322 222222111 234588999996432
Q ss_pred --hhHHHHHHHHhCCCeEE
Q 011624 338 --GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 338 --~g~~~~~~~~~glPV~~ 354 (481)
.......+...+.|+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 131 VETEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCeEEE
Confidence 23445666777888743
No 147
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.00088 Score=59.07 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh-----hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-----IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~-----~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.++||||....+...+.. .. ....+.+++|+|.....+.. .....+. ...+ .-+|.||+|...
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~--~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~ 125 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQE--SC--LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLAR 125 (175)
T ss_dssp EEEEEEECCC-------CHHHH--HT--TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTT
T ss_pred EEEEEEEecCCCCccchhhhHH--hh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhcc
Confidence 4578999999974321111111 11 12347789999986543221 1111121 1233 458899999643
Q ss_pred c----hhHHHHHHHHhCCCe
Q 011624 337 R----GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV 352 (481)
. .......+...+.|+
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~ 145 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKF 145 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEE
T ss_pred ccccCHHHHHHHHHHcCCeE
Confidence 2 223344555667666
No 148
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.44 E-value=0.00019 Score=65.84 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH------HHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA------LVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~------~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... . .. ......+.+++|+|+....+... .+..+...-...-+|+||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~~~-~---~~--~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRT-I---TS--SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEEEEEECCTTTTTTTC-C---CG--GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCChHHHHH-H---HH--HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 46789999999643210 0 00 11123478899999865533221 122222122234688999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 130 VVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp CSCHHHHHHHHHHTTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 2344556666777763
No 149
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.44 E-value=0.00026 Score=65.71 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCcccc------HHHHHHHHhhhhc-cCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCC
Q 011624 264 KNVDVVIVDTAGRLQID------KAMMDELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 334 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d------~~~~~el~~i~~~-~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~ 334 (481)
.+..+.|+||||..... ......+...... ...+.+++|+|+..+ .........+...-...-+|+||+|.
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 45789999999964320 1111111122222 123668999998533 22222333333222234588999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 157 ~~ 158 (223)
T 4dhe_A 157 LT 158 (223)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 150
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=0.00056 Score=62.46 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..-|+++|.+||||||++..|.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45678889999999999998775
No 151
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=0.00021 Score=64.92 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHH---HHhhhcCCeeEEEEcCCCCCC-
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALV---TTFNIEIGITGAILTKLDGDS- 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~---~~f~~~~~i~GvIlnKvD~~~- 336 (481)
..+.+.|+||||...... .... .. ...+.+++|+|.....+. .... ..+...-...-+|+||+|...
T Consensus 70 ~~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHS-LAPM---YY--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp SEEEEEEEEECCSGGGGG-GTHH---HH--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCchhhHh-hhHH---hh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 356789999999643211 1111 11 134788999998554322 1122 222111223558899999642
Q ss_pred ---chhHHHHHHHHhCCCe
Q 011624 337 ---RGGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ---~~g~~~~~~~~~glPV 352 (481)
....+..++...+.|+
T Consensus 144 ~~v~~~~~~~~~~~~~~~~ 162 (192)
T 2fg5_A 144 REVPLKDAKEYAESIGAIV 162 (192)
T ss_dssp CCSCHHHHHHHHHTTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 1334455555666665
No 152
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.44 E-value=0.00049 Score=63.12 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.......... . ....+.+++|+|+...... . ..+......-...-+|+||+|....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~----~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTA----Y--YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHH----H--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC
T ss_pred EEEEEEEeCCCcHHHHHHHHH----H--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 367899999996432111111 1 1234788999998654322 1 1222222112234588999997322
Q ss_pred --hhHHHHHHHHhCCCeE
Q 011624 338 --GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 --~g~~~~~~~~~glPV~ 353 (481)
...+..++...++|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 142 VTADQGEALAKELGIPFI 159 (213)
T ss_dssp SCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHcCCEEE
Confidence 2334556666787763
No 153
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.43 E-value=0.00094 Score=71.25 Aligned_cols=44 Identities=39% Similarity=0.561 Sum_probs=38.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
..|.+|+++|.+|+||||++.+|+.+|...+.++.+++.|.+|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 35789999999999999999999999988899999899886653
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.43 E-value=0.00028 Score=65.39 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe--ccCCchhHHHHHHHhhhhcCCCe--ecCCCCCCHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQG 257 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId--~D~~rp~aidql~~~~~~~gv~v--~~~~~~~~~~~~l~~~ 257 (481)
+.++.+++|+.|+||||.+..++..+..+|++|+++. .|. |.+ +. ......|+.. ..... .. +.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~--~~--~i~s~~g~~~~a~~~~~---~~----~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYS--KE--DVVSHMGEKEQAVAIKN---SR----EI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------C--EEECTTSCEEECEEESS---ST----HH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cch--HH--HHHhhcCCceeeEeeCC---HH----HH
Confidence 4579999999999999999999999999999999885 332 211 00 1112223321 11111 11 33
Q ss_pred HHHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 258 l~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
++.+. .++|+|+||-+..+. ......+..+..
T Consensus 75 ~~~~~-~~~dvViIDEaqfl~--~~~v~~l~~l~~ 106 (191)
T 1xx6_A 75 LKYFE-EDTEVIAIDEVQFFD--DEIVEIVNKIAE 106 (191)
T ss_dssp HHHCC-TTCSEEEECSGGGSC--THHHHHHHHHHH
T ss_pred HHHHh-ccCCEEEEECCCCCC--HHHHHHHHHHHh
Confidence 33332 469999999987653 233555554443
No 155
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.42 E-value=0.0003 Score=62.37 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=34.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
...+++.|++|+||||++..++..+...|+++..+++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 4578899999999999999999988888988888877643
No 156
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.41 E-value=0.00039 Score=62.67 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhh--cCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNI--EIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~--~~~i~GvIlnKvD~~~ 336 (481)
.+++.|+||||..... .... ... ...+.+++|+|.....+. . ..+..+.. .. ..-+|+||+|...
T Consensus 68 ~~~~~l~Dt~G~~~~~-~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ilv~nK~Dl~~ 140 (190)
T 3con_A 68 TCLLDILDTAGQEEYS-AMRD---QYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV-PMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEEEECCC---------------C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC-CEEEEEECTTCSC
T ss_pred EEEEEEEECCChHHHH-HHHH---Hhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEECCcCCc
Confidence 4679999999964211 1111 111 234778899998654322 1 12222221 23 3458999999643
Q ss_pred ---chhHHHHHHHHhCCCeE
Q 011624 337 ---RGGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 ---~~g~~~~~~~~~glPV~ 353 (481)
....+..++...++|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEE
T ss_pred ccCCHHHHHHHHHHcCCeEE
Confidence 23445667777788773
No 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.41 E-value=0.00034 Score=64.76 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|++|+||||++..|.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4567889999999999998875
No 158
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.41 E-value=0.0014 Score=72.01 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~---~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
+.+.++++|++|+||||++..|+.... ..| +| .+..... +... . . ...++.+......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~-d~~~-~-e--~~~giti~~~~~~----------- 68 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTT-DYTP-E-A--KLHRTTVRTGVAP----------- 68 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSS-CCSH-H-H--HHTTSCCSCEEEE-----------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccc-cCCH-H-H--HhcCCeEEecceE-----------
Confidence 457899999999999999999875432 112 11 1110110 0000 0 0 0112222110000
Q ss_pred HHHHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHHhh-hcCCeeEEEEcCCCCC
Q 011624 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 335 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~f~-~~~~i~GvIlnKvD~~ 335 (481)
+....+.+.|+||||.... ..++...... .+.+++|+|+..+. ......+... ..+. .-+++||+|..
T Consensus 69 --~~~~~~~~nliDTpG~~~f----~~~~~~~l~~--ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 69 --LLFRGHRVFLLDAPGYGDF----VGEIRGALEA--ADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp --EEETTEEEEEEECCCSGGG----HHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC
T ss_pred --EeeCCEEEEEEeCCCccch----HHHHHHHHhh--cCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh
Confidence 0124677899999997542 2333333332 37889999985441 1222222221 2233 34789999975
Q ss_pred Cchh-HHHHHHHHhC
Q 011624 336 SRGG-AALSVKEVSG 349 (481)
Q Consensus 336 ~~~g-~~~~~~~~~g 349 (481)
.... .+..+....+
T Consensus 140 ~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 140 GDYYALLEDLRSTLG 154 (665)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhC
Confidence 2222 3345555566
No 159
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.41 E-value=0.00053 Score=60.22 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---H---HHHHhhhcCCeeEEEEcCCCCCC--
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---A---LVTTFNIEIGITGAILTKLDGDS-- 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~---~~~~f~~~~~i~GvIlnKvD~~~-- 336 (481)
.+.+.|+||||.... ..+.. ......+.+++|+|.....+.. . .+......-...-+|+||+|...
T Consensus 54 ~~~l~i~Dt~G~~~~-----~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 127 (170)
T 1z08_A 54 RVNLAIWDTAGQERF-----HALGP-IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127 (170)
T ss_dssp EEEEEEEECCCC------------C-CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHhh-----hhhHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 457889999996321 11110 1112357889999986553221 1 12222111223458999999643
Q ss_pred --chhHHHHHHHHhCCCeE
Q 011624 337 --RGGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 --~~g~~~~~~~~~glPV~ 353 (481)
....+...+...+.|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 128 HVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp CSCHHHHHHHHHHTTCEEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 12344556666676663
No 160
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.40 E-value=0.0012 Score=61.82 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..-|+++|.+||||||++..|.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678889999999999998875
No 161
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.40 E-value=0.00067 Score=72.35 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCC-----------eecCC-CCCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-----------VYTAG-TEVK 249 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~-----------v~~~~-~~~~ 249 (481)
+..+++++|++|+||||++..++..+...|.+|+++..+--. .++.......|.+ +.... ..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 456999999999999999999998888789888777654321 1222222222221 11111 1234
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEcCC
Q 011624 250 PSQIAKQGLEEAKKKNVDVVIVDTA 274 (481)
Q Consensus 250 ~~~~l~~~l~~~~~~~~D~VIIDt~ 274 (481)
..+..+.++..+...+++++|+| |
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD-p 379 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID-S 379 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-C
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc-C
Confidence 44555556666655678888888 5
No 162
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.39 E-value=0.001 Score=69.71 Aligned_cols=66 Identities=11% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHh-hhcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f-~~~~~i~GvIlnKvD 333 (481)
.++.+.|+||||.-. +...+.. .....+.++||+|+..+. ...+.+... ...++..-+++||+|
T Consensus 83 ~~~~~~iiDtPGh~~----f~~~~~~--~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 83 PKYQVTVIDAPGHRD----FIKNMIT--GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp SSEEEEEEECCCCTT----HHHHHHH--SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred CCceEEEEECCCcHH----HHHHHHh--hhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 456799999999642 2333322 233568899999997552 122222111 112332456899999
Q ss_pred CC
Q 011624 334 GD 335 (481)
Q Consensus 334 ~~ 335 (481)
..
T Consensus 157 l~ 158 (458)
T 1f60_A 157 SV 158 (458)
T ss_dssp GG
T ss_pred cc
Confidence 75
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.38 E-value=0.0023 Score=62.28 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+||||||+...|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 367888999999999998886
No 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.38 E-value=0.00044 Score=73.03 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHh-hhcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f-~~~~~i~GvIlnKvD 333 (481)
.++.+.|+||||.-.. ...+... ....+.+++|+|+..+. ...+.+... ...+...-+++||+|
T Consensus 109 ~~~~~~iiDTPG~~~f----~~~~~~~--~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~D 182 (483)
T 3p26_A 109 HRANFTIVDAPGHRDF----VPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 182 (483)
T ss_dssp SSCEEEEECCCCCGGG----HHHHHHH--HTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCceEEEEECCCcHHH----HHHHHHh--hhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcC
Confidence 4678999999998532 2222222 22358899999996541 111111111 112233457899999
Q ss_pred CCC
Q 011624 334 GDS 336 (481)
Q Consensus 334 ~~~ 336 (481)
...
T Consensus 183 l~~ 185 (483)
T 3p26_A 183 NVD 185 (483)
T ss_dssp GGT
T ss_pred ccc
Confidence 653
No 165
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.37 E-value=0.001 Score=67.30 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=86.3
Q ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 183 ~~VI~i~G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+.+.++|. .++||||++..|...+.++|+++..+..-.. ....+...|++.-..... .-.......+..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt-------g~li~~~~gv~~D~~~~~-~~ag~~e~~i~~~ 240 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT-------GILIGADAGYVIDAVPAD-FVSGVVEKAVLKL 240 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH-------HHHTTCSEECCGGGSBGG-GHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCce-------eeeeccCCCCCCCceecc-hhhHHHHhhHHHh
Confidence 345666666 8899999999999999999999996543211 111222234432111100 0111122223333
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCc--------------chHHHHHHHHHhhhcCCeeEE
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--------------TGQEAAALVTTFNIEIGITGA 327 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~--------------~~~~~~~~~~~f~~~~~i~Gv 327 (481)
..+++|++||.++|.+........ ...++.-.+|+.++|+-++. .-++....++.+. ..++.|+
T Consensus 241 ~~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~-~~~V~gi 318 (350)
T 2g0t_A 241 EKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS-NAKVIGG 318 (350)
T ss_dssp HHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS-SCEEEEE
T ss_pred hhcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc-CCcEEEE
Confidence 237899999999987654221211 12244555678777776432 2244556666666 5779999
Q ss_pred E-EcCCCCCCchhHHHHHHHHhCCCe
Q 011624 328 I-LTKLDGDSRGGAALSVKEVSGKPI 352 (481)
Q Consensus 328 I-lnKvD~~~~~g~~~~~~~~~glPV 352 (481)
+ +|- .+++|+|+
T Consensus 319 ~~lN~-------------~~~~glP~ 331 (350)
T 2g0t_A 319 VSLNG-------------GFETDLPV 331 (350)
T ss_dssp ECSSC-------------CCCCSSCE
T ss_pred EEcCc-------------hHHHCCCe
Confidence 9 997 34568887
No 166
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.37 E-value=0.0008 Score=61.77 Aligned_cols=82 Identities=18% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HH---HHHhhhcCCeeEEEEcCCCCCC--
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFNIEIGITGAILTKLDGDS-- 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~---~~~f~~~~~i~GvIlnKvD~~~-- 336 (481)
.+.+.|+||||.... ...... .. ...+.+++|+|.+...+.. .. +..+...-...-+|.||+|...
T Consensus 77 ~~~l~i~Dt~G~~~~-~~~~~~---~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 77 RVKLQIWDTAGQERF-RTITQS---YY--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EEEEEEECCTTCGGG-HHHHHH---HH--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCcHhH-HHHHHH---HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence 367899999997432 111111 11 2358889999986553321 12 2222111123458899999643
Q ss_pred --chhHHHHHHHHhCC-Ce
Q 011624 337 --RGGAALSVKEVSGK-PI 352 (481)
Q Consensus 337 --~~g~~~~~~~~~gl-PV 352 (481)
....+..++...+. ++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 151 EVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp CSCHHHHHHHHHHTTCSEE
T ss_pred ccCHHHHHHHHHHcCCCEE
Confidence 22344556666676 55
No 167
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.37 E-value=0.00069 Score=61.78 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HH---HHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~---~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.... ... ..... ...+.+++|+|+....+.. .. +..+...-...-+|+||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~-~~~---~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 56 RIKLQIWDTAGLERY-RTI---TTAYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEEECCSGGG-HHH---HHTTG--GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred EEEEEEEECCCchhh-cch---HHHhh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 467899999997431 111 11122 2347889999996553321 11 22222112235589999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 130 VVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHCCCeEE
Confidence 2344556667787763
No 168
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.0014 Score=58.20 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||..... ...... ....+.+++|+|+....+. . ..+..+...-...-+|+||+|....
T Consensus 59 ~~~~~~~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFR----SVTHAY--YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp EEEEEEEECCCC------------CC--GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred EEEEEEEeCCCcHHHH----HHHHHH--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 4578999999964211 111111 1234788999999655332 1 1222222112235588999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 133 VVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp CSCHHHHHHHHHHHTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 2344556666787773
No 169
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.36 E-value=0.00032 Score=62.07 Aligned_cols=84 Identities=15% Similarity=0.037 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHH---HHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~---~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... .... .. ...+.+++|+|+....+. ... +......-...-+|+||+|....
T Consensus 62 ~~~~~~~Dt~G~~~~~~-~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRS-LIPS---YI--RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEEEEEEECCSGGGGG-GSHH---HH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHHHH-HHHH---Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 45789999999643211 1111 11 134788999998654322 111 12221112234589999996321
Q ss_pred ---hhHHHHHHHHhCCCeEE
Q 011624 338 ---GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~~ 354 (481)
.......+...+.|+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 2y8e_A 136 QVSTEEGERKAKELNVMFIE 155 (179)
T ss_dssp CSCHHHHHHHHHHHTCEEEE
T ss_pred cCCHHHHHHHHHHcCCeEEE
Confidence 23344555666776633
No 170
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.36 E-value=0.0012 Score=59.48 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..-|+++|.+||||||+...|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34567888999999999998885
No 171
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.0011 Score=58.14 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH------HHHHHHhh---hcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA------AALVTTFN---IEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~------~~~~~~f~---~~~~i~GvIlnKvD~~ 335 (481)
.+.+.|+||||..... ..... ... ..+.+++|+|....... ...+..+. ...+ .-+|+||+|..
T Consensus 50 ~~~~~~~Dt~G~~~~~-~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFP-AMQRL---SIS--KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCH-HHHHH---HHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhH-HHHHH---hcc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 4678999999975322 21111 111 23788999998654322 12222222 1233 45899999953
Q ss_pred Cc----hhHHHHHHHHhCCCe
Q 011624 336 SR----GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~----~g~~~~~~~~~glPV 352 (481)
.. ...........+.|+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~ 143 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAF 143 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEE
T ss_pred cccccCHHHHHHHHHHhCCeE
Confidence 22 223344555667665
No 172
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.35 E-value=0.0002 Score=72.44 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+||||||+...|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 57888999999999998885
No 173
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.35 E-value=0.00065 Score=59.18 Aligned_cols=81 Identities=19% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhh--cCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNI--EIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~--~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||.... ...... ... ..+.+++|+|.....+.. ..+..... ..+ .-+|+||+|...
T Consensus 51 ~~~~~l~D~~G~~~~-~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 51 EVQIDILDTAGQEDY-AAIRDN---YFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEECCC---C-HHHHHH---HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcchh-HHHHHH---Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 467899999996432 222221 111 247889999986543221 12222221 233 458999999632
Q ss_pred c----hhHHHHHHHHhCCCe
Q 011624 337 R----GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV 352 (481)
. ...+...+...+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNY 143 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEE
T ss_pred cCccCHHHHHHHHHHcCCeE
Confidence 1 234455566667766
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.35 E-value=0.00016 Score=66.85 Aligned_cols=43 Identities=37% Similarity=0.684 Sum_probs=37.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.++.+|+++|++|+||||++..|+..+...|..+.++|.|..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 3578999999999999999999999998778887788888654
No 175
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.35 E-value=0.00056 Score=61.96 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh---hcCCeeEEEEcCCCCCC--
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGDS-- 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~---~~~~i~GvIlnKvD~~~-- 336 (481)
.+.+.|+||||........... ....+.+++|+|+....+.. .....+. ..-...-+|+||+|...
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~------~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 142 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSY------YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHH------HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhhhHHHH------hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence 4678999999964321111111 11347889999986543221 2122221 11223458899999642
Q ss_pred --chhHHHHHHHHhCCCeE
Q 011624 337 --RGGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 --~~g~~~~~~~~~glPV~ 353 (481)
....+...+...+.++.
T Consensus 143 ~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 143 DVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCEEE
Confidence 12344556666777663
No 176
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.35 E-value=0.00043 Score=72.29 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHH-hhhcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTT-FNIEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~-f~~~~~i~GvIlnKvD 333 (481)
.++.+.|+||||.-. ....+... ...++.++||+|+..+. ...+.+.. ....++..-+++||+|
T Consensus 93 ~~~~~~iiDTPGh~~----f~~~~~~~--~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 EKKHFTILDAPGHKS----FVPNMIGG--ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 166 (439)
T ss_pred CCeEEEEEECCChHH----HHHHHHhh--HhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCC
Confidence 456899999999643 22222222 22358899999996541 12222211 1222332347899999
Q ss_pred CC
Q 011624 334 GD 335 (481)
Q Consensus 334 ~~ 335 (481)
..
T Consensus 167 l~ 168 (439)
T 3j2k_7 167 DP 168 (439)
T ss_pred Cc
Confidence 74
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.34 E-value=0.0047 Score=61.95 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH-
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK- 262 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~- 262 (481)
.++++|++|+||||++..++..+... +..+..++|...... .+-+.......+.+.- .......+........+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF-TAIIGEIARSLNIPFP--RRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH-HHHHHHHHHHTTCCCC--SSCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH-HHHHHHHHHHhCccCC--CCCCCHHHHHHHHHHHHhh
Confidence 88999999999999999999888776 688888887655421 1111122233333221 112233333333222222
Q ss_pred cCCCcEEEEcCCCCccccHHHHHHHHhhhh
Q 011624 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~~~d~~~~~el~~i~~ 292 (481)
..+..+++||-+..+ +......+..+..
T Consensus 123 ~~~~~vlilDE~~~l--~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL--APDILSTFIRLGQ 150 (389)
T ss_dssp TTCCEEEEEETGGGS--CHHHHHHHHHHTT
T ss_pred cCCeEEEEEECcccc--chHHHHHHHHHHH
Confidence 234679999988765 4455566555543
No 178
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.33 E-value=0.0008 Score=59.92 Aligned_cols=81 Identities=20% Similarity=0.101 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhh--cCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNI--EIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~--~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||.... ...... ... ..+.+++|+|....... . ..+..+.. ..+ .-+|+||+|...
T Consensus 65 ~~~~~l~Dt~G~~~~-~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 137 (187)
T 2a9k_A 65 EVQIDILDTAGQEDY-AAIRDN---YFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 137 (187)
T ss_dssp EEEEEEEECCCTTCC-HHHHHH---HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCccc-HHHHHH---Hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 467899999997532 222221 111 24788999998654322 1 12222222 233 458999999532
Q ss_pred ----chhHHHHHHHHhCCCe
Q 011624 337 ----RGGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV 352 (481)
....+...+...+.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 138 KRQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp GCCSCHHHHHHHHHHTTCEE
T ss_pred cCccCHHHHHHHHHHcCCeE
Confidence 2334455666667766
No 179
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.33 E-value=0.0015 Score=67.99 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHH--HHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEA--AALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~--~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+..+.|+||||.... ...+... ...++.+++|+|+..+ +.. ...+... .++..-+++||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f----~~~~~~~--~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY----TRNMATG--ASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGG----HHHHHHH--HTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHH----HHHHHHH--HhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 3567999999996532 2222221 2345889999999554 211 1222221 2333457899999754
No 180
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.00056 Score=59.82 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh---cCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~---~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||..... ..... .. ...+.+++|+|+....+.. .....+.. .-...-+|+||+|....
T Consensus 51 ~~~~~~~D~~G~~~~~-~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFA-SLAPX---YY--RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEEEECCSGGGG-GGHHH---HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred EEEEEEEECCCChhhh-hhhhh---hh--ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 4578999999964321 11111 11 2347889999996553322 11222211 11234578999995321
Q ss_pred ------hhHHHHHHHHhCCCe
Q 011624 338 ------GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ------~g~~~~~~~~~glPV 352 (481)
.......+...+.|+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEE
T ss_pred cccCCCHHHHHHHHHHcCCEE
Confidence 123344555667766
No 181
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.0005 Score=83.17 Aligned_cols=87 Identities=21% Similarity=0.370 Sum_probs=58.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC-chhHHHHHHHhhhhcCCCeecCC-CCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~-rp~aidql~~~~~~~gv~v~~~~-~~~~~~~~l~~~l~ 259 (481)
++++++++|++|+||||++..++....++|.+|++++++-- .+-+ +...|+++-... ...++.+.+.+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-------a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-------HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-------HHHcCCCchhceeecCChHHHHHHHHH
Confidence 57899999999999999999999998899999999998843 2332 223343321110 01223343323333
Q ss_pred -HHHcCCCcEEEEcCCC
Q 011624 260 -EAKKKNVDVVIVDTAG 275 (481)
Q Consensus 260 -~~~~~~~D~VIIDt~G 275 (481)
.++...+|+||||.-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 3344689999999973
No 182
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.32 E-value=0.00041 Score=60.73 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh---hcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~---~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||..... ..... .. ...+.+++|+|+....+.. .....+. ..--+.-+|.||+|....
T Consensus 54 ~~~~~~~D~~G~~~~~-~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYH-SLAPM---YY--RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEEECCSGGGG-GGHHH---HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHhh-hhhHH---hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 5678999999964321 11111 11 2347889999986553321 1122221 111234466799996321
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (170)
T 1r2q_A 128 AVDFQEAQSYADDNSLLF 145 (170)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCeE
Confidence 233455555666665
No 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.32 E-value=0.00025 Score=65.66 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+++++|++|+||||++..|+..+...|.+|.+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 578999999999999999999999998889999999888764
No 184
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.32 E-value=0.00075 Score=60.41 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHh---h--hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF---N--IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f---~--~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||.... ... ..... ...+.+++|+|+....+. ......+ . ... ..-+|+||+|...
T Consensus 69 ~~~~~l~Dt~G~~~~-~~~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERF-RSL---TTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP-DIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGG-HHH---HHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSC-CEEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHH-HHH---HHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccc
Confidence 467899999997431 111 11122 235788999998655332 1222222 1 222 3458899999643
Q ss_pred ----chhHHHHHHHHhCCCeE
Q 011624 337 ----RGGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV~ 353 (481)
....+..++...+.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 142 QRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GCCSCHHHHHHHHHHHTCCEE
T ss_pred ccccCHHHHHHHHHHcCCCEE
Confidence 12345566667788773
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.31 E-value=0.0001 Score=74.65 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCccc-----cHHHHHHHHhhh--hccCCceEEEEEeCcc----hHHHHHHHHHhhhcCCeeEEEEcCCC
Q 011624 265 NVDVVIVDTAGRLQI-----DKAMMDELKDVK--RVLNPTEVLLVVDAMT----GQEAAALVTTFNIEIGITGAILTKLD 333 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~-----d~~~~~el~~i~--~~~~p~~vvLVvda~~----~~~~~~~~~~f~~~~~i~GvIlnKvD 333 (481)
..++.|+||||.... ......++..+. ....++.+++|+++.. .++....++.+.+.-...-+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999997643 111111111111 1235677888887632 23445566666543334568899999
Q ss_pred CCCch
Q 011624 334 GDSRG 338 (481)
Q Consensus 334 ~~~~~ 338 (481)
.....
T Consensus 215 l~~~~ 219 (360)
T 3t34_A 215 LMDKG 219 (360)
T ss_dssp GCCTT
T ss_pred cCCCc
Confidence 65443
No 186
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.31 E-value=0.00055 Score=68.54 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=47.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
+.++++.|++|+||||++..+|.. .|.+|++++++.-.+ +..+. .+..+.+....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~--------------v~~~~----~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP--------------LSGYN----TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS--------------STTCB----CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh--------------hhhhh----cCHHHHHHHHHHHHh
Confidence 467889999999999999999876 678888888821100 01111 233444444444443
Q ss_pred cCCCcEEEEcCCCCc
Q 011624 263 KKNVDVVIVDTAGRL 277 (481)
Q Consensus 263 ~~~~D~VIIDt~G~~ 277 (481)
..+++|||.-+.+
T Consensus 182 --~~~LLVIDsI~aL 194 (331)
T 2vhj_A 182 --QHRVIVIDSLKNV 194 (331)
T ss_dssp --HCSEEEEECCTTT
T ss_pred --hCCEEEEeccccc
Confidence 2349999998765
No 187
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.31 E-value=0.0016 Score=57.14 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh---h--cCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---I--EIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~---~--~~~i~GvIlnKvD~~~ 336 (481)
.+.+.++||||.......+... ... ..+.+++|+|.....+.. .....+. . .. ..-+|.||+|...
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDH---CLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL-PVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEECCCCC--------CH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC-CEEEEEECTTCGG
T ss_pred EEEEEEEECCCccccchhhhhh---hhc--cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCC-CEEEEeeCcchhh
Confidence 4678899999975321111111 011 247889999986543221 2222221 1 23 3458899999642
Q ss_pred ----chhHHHHHHHHhCCCe
Q 011624 337 ----RGGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV 352 (481)
....+...+...+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKH 143 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEE
T ss_pred cccCCHHHHHHHHHHcCCcE
Confidence 2234455666677766
No 188
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.31 E-value=0.00033 Score=63.35 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HH---HHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AA---LVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~---~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
..+.+.|+||||...... .. . ......+.+++|+|+....+. .. .+..+...-...-+|+||+|....
T Consensus 69 ~~~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRT-IT---T--AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEEECCSCCSSCC-SG---G--GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred eEEEEEEEeCCCcHHHhh-hH---H--HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 356789999999643211 10 1 111235788999998654322 11 222221112235688999996432
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 011624 338 ----GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 143 RVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp CCSCHHHHHHHHHHHTCEEE
T ss_pred cCCCHHHHHHHHHHcCCeEE
Confidence 2344566667777663
No 189
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.30 E-value=0.00011 Score=72.42 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=34.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+|+++|++||||||++..|+..|...|.++.++++|.|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999999888888999999999864
No 190
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.30 E-value=0.00034 Score=63.32 Aligned_cols=84 Identities=19% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh---hcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~---~~~~i~GvIlnKvD~~~~ 337 (481)
..+.+.|+||||...... .... .. ...+.+++|+|+...... ......+. ..-...-+|+||+|....
T Consensus 72 ~~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRA-ITSA---YY--RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEEESCCCTTCT-THHH---HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEeCCCchhhhh-hhHH---Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 346789999999743211 1111 11 134788999998655332 12222221 112235688999996431
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 011624 338 ----GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~ 353 (481)
...+...+...+.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEEE
T ss_pred cccCHHHHHHHHHHcCCEEE
Confidence 2334555566677663
No 191
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.29 E-value=0.0014 Score=58.06 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||++..|.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999999998775
No 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.0002 Score=64.75 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.+|++.|++||||||++..|+..|...|+++.+++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4789999999999999999999999889999888644
No 193
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00043 Score=62.97 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.+.+.|+||||..... ..... ... ..+.+++|+|+....+.. ..+..+...-...-+|+||+|..
T Consensus 74 ~~~l~l~Dt~G~~~~~-~~~~~---~~~--~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFN-SITSA---YYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGH-HHHHH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHH-HHHHH---Hhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 4678999999964321 11111 111 247889999986553322 22222222122356899999964
No 194
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.28 E-value=0.00025 Score=73.84 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=53.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.|+++|.+||||||+...|+ |.+..++.- .|+. +. +...... .+.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~~---~~g~-----T~----d~~~~~~-----------------~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA------GERISIVED---TPGV-----TR----DRIYSSA-----------------EWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE------EEECC-----------------------CEEEEC-----------------TTC
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeecC---CCCC-----cc----ceEEEEE-----------------EEC
Confidence 68899999999999998885 333221110 0110 00 0000000 124
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhh--hccCCceEEEEEeCcchHH--HHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTGQE--AAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~--~~~~p~~vvLVvda~~~~~--~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+..+.|+||||....+..+..++.... ..-.++.+++|+|+..+.+ -......+...-...-+++||+|..
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 567999999997532211222222111 1123578899999854421 1122222222222456889999964
No 195
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.27 E-value=0.00076 Score=61.37 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh---h---cCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---I---EIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~---~---~~~i~GvIlnKvD~~ 335 (481)
.+.+.|+||||... ....... .....+.+++|+|++...+. ......+. . .-...-+|+||+|..
T Consensus 72 ~~~~~l~Dt~G~~~----~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDL----YKEQISQ--YWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHH----HHHHHST--TCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHH----HHHHHHH--HHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 56789999999732 1111111 12235788999999655332 22222221 1 122356899999964
Q ss_pred C---c--hhHHHHHHHHhCCCeE
Q 011624 336 S---R--GGAALSVKEVSGKPIK 353 (481)
Q Consensus 336 ~---~--~g~~~~~~~~~glPV~ 353 (481)
. . ...+...+...+.++.
T Consensus 146 ~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp ----CCCHHHHHHHHHHTTCEEE
T ss_pred hhhccCCHHHHHHHHHHcCCEEE
Confidence 3 1 2344566667776663
No 196
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.0025 Score=58.52 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
.+.+|+++|++|+||||++..|+..+ | ..++++|.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 36689999999999999999998776 4 35678887753
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.26 E-value=0.00068 Score=62.96 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=37.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.++.+++++|++|+||||++..|+..+...|.++..|..|.|-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 3568999999999999999999999888668788989888764
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.25 E-value=0.00024 Score=64.16 Aligned_cols=42 Identities=45% Similarity=0.709 Sum_probs=36.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+|+++|++|+||||++..|+..|...|..+..+|.|..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 467899999999999999999999988789988888877543
No 199
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.24 E-value=0.001 Score=59.40 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh---cCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~---~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.... ..+. .......+.+++|+|+....+.. .....+.. .-...-+|.||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~-----~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 56 RIKLQIWDTAGQERF-----RTIT-TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEEEEEEC--------------C-CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEEEEEEcCCCChhh-----hhhH-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 467899999996321 1110 01112357889999996553322 11222211 11234588999996431
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+..++...+.|+
T Consensus 130 ~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 130 QVSKERGEKLALDYGIKF 147 (183)
T ss_dssp CSCHHHHHHHHHHHTCEE
T ss_pred cCCHHHHHHHHHHcCCeE
Confidence 334456666777766
No 200
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.24 E-value=0.00068 Score=60.07 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+..+.|+||||...... .. .......+.+++|+|+... ......+......-...-+|+||+|...
T Consensus 53 ~~~~~~l~Dt~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTT-MR-----ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp TTEEEEESCCCSSSSSSC-SC-----CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCceEEEEECCCCHHHHH-HH-----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 345688999999643211 00 0112234778999997542 3333344433322223568999999754
No 201
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.0006 Score=61.39 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
..+.+.|+||||...... .... .. ...+.+++|+|+...... ......+.. .-...-+|+||+|...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRT-LTPS---YY--RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEEECSSGGGCC-SHHH---HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred eEEEEEEEeCCCchhhhh-hhHH---Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 346789999999643211 1111 11 134788999999655332 222222221 1123458899999743
Q ss_pred c---hhHHHHHHHHhCCCe
Q 011624 337 R---GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~---~g~~~~~~~~~glPV 352 (481)
. ...+...+...+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLF 154 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 2 233455566666665
No 202
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.23 E-value=0.00074 Score=60.67 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+||||||++..|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457788999999999998774
No 203
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.23 E-value=0.00087 Score=70.48 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHH--Hhhh-hccCCceEEEEEeCcch--HHHHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDEL--KDVK-RVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el--~~i~-~~~~p~~vvLVvda~~~--~~~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||..... .....+ .... .....+.+++|+|+..+ ........... . ...-+|+||+|...
T Consensus 270 ~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~-~-~piivV~NK~Dl~~ 344 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK-H-RPLILVMNKIDLVE 344 (462)
T ss_dssp TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT-T-SCEEEEEECTTSSC
T ss_pred CCEEEEEEECCccccch-hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc-C-CcEEEEEECCCCCc
Confidence 46779999999974321 111111 1111 22345889999998543 22222233332 2 24558899999654
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.22 E-value=0.00022 Score=66.44 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D~~r 223 (481)
++.+|++.|++|+||||++..|+..|. ..|.++.+++.|.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 467999999999999999999999998 789999999877654
No 205
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=97.22 E-value=3.3e-05 Score=59.48 Aligned_cols=33 Identities=36% Similarity=0.268 Sum_probs=30.1
Q ss_pred hhhcchhHHHHHHccChhhhccCCcccccccCC
Q 011624 449 AEKSLKIMEAMIEAMTPGIFFFSIIIIGLTFKR 481 (481)
Q Consensus 449 ~a~~f~~~~~li~sm~~e~~~~~~l~~~~~~~~ 481 (481)
++..|+++++||+|||++|+.+|.|+++||++|
T Consensus 8 ~e~~lkr~~aII~SMT~~Er~nP~ii~~SR~~R 40 (69)
T 1dul_A 8 EQKVLVRMEAIINSMTMKERAKPEIIKGSRKRR 40 (69)
T ss_dssp HCCHHHHHHHHHHTSCHHHHHCGGGCCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHhCccccCHHHHHH
Confidence 456789999999999999999999999998876
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.21 E-value=0.0013 Score=78.73 Aligned_cols=90 Identities=22% Similarity=0.335 Sum_probs=60.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCC--CCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--TEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~--~~~~~~~~l~~~l~ 259 (481)
+.++|-+.|+.|+||||++...++...++|..+++||+.-.- ++ .|+...|+++-..- .+....+.+.-+-.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~----~~--~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DP--IYARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CH--HHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC----CH--HHHHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 457999999999999999999999988999999999997321 12 23555666543221 11122333322222
Q ss_pred HHHcCCCcEEEEcCCCCc
Q 011624 260 EAKKKNVDVVIVDTAGRL 277 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~ 277 (481)
.+++...|+|+||....+
T Consensus 1504 ~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHcCCCCEEEEccHHhC
Confidence 334578999999997554
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.21 E-value=0.0015 Score=68.02 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.|+++|.+||||||+...|. |.+..+++ | .|+. + ...... .+.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~-~--~~g~-----T------~d~~~~---------------~~~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVE-D--EEGV-----T------RDPVQD---------------TVEWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C----------------------------CCSEE---------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceec-C--CCCC-----c------cceeeE---------------EEEEC
Confidence 57899999999999998886 33332211 1 0110 0 000000 00124
Q ss_pred CCcEEEEcCCCCccc-----cHHHHHHHHhhhhccCCceEEEEEeCcchHHH--HHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~-----d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~--~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
+..+.|+||||.... ...+....... .-..+.+++|+|+..+... ..........-...-+|+||+|..
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNM--IREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHH--HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHH--HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 556899999997532 11222221111 2245889999998543111 111121211122345889999974
No 208
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.21 E-value=0.0013 Score=78.65 Aligned_cols=102 Identities=21% Similarity=0.373 Sum_probs=65.0
Q ss_pred HHHHHhc-CccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 164 ELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 164 ~L~~~l~-~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
.|..+++ ++.. ++.++.+.|++|+||||++..++...+++|.+|++++++--... + ++...|++.-
T Consensus 370 ~LD~lLg~GGl~-------~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~----~--~a~~lGvd~~ 436 (1706)
T 3cmw_A 370 SLDIALGAGGLP-------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP----I--YARKLGVDID 436 (1706)
T ss_dssp HHHHHTSSSSEE-------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH----H--HHHHTTCCGG
T ss_pred HHHHHhccCCcC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH----H--HHHHcCCCHH
Confidence 4555565 4332 46799999999999999999999999999999999999864322 1 1333444321
Q ss_pred cCC-CCCCHHHHHHHHHHH-HHcCCCcEEEEcCCCCcc
Q 011624 243 TAG-TEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 243 ~~~-~~~~~~~~l~~~l~~-~~~~~~D~VIIDt~G~~~ 278 (481)
... ...+..+.+.+.+.. .+..+.++||||....+.
T Consensus 437 ~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 437 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 110 011122323233332 224679999999976553
No 209
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.21 E-value=0.00022 Score=64.44 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=32.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
+.+|+++|++||||||++..|+..|..+|.+..+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 46899999999999999999999998888655556644
No 210
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00079 Score=62.16 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.... . ...... ....+.+++|+|.+...+. . ..+..+...-...-+|.||+|....
T Consensus 74 ~~~l~l~Dt~G~~~~-~---~~~~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 74 KVKLQIWDTAGQERF-R---SITQSY--YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp EEEEEEEEECCSGGG-H---HHHGGG--STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHH-H---HHHHHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 457899999996421 1 111111 2245788999998655332 1 2222222112234578999996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 148 ~v~~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 148 EVSQQRAEEFSEAQDMYY 165 (201)
T ss_dssp SSCHHHHHHHHHHHTCCE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233445556667776
No 211
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.20 E-value=0.0019 Score=58.71 Aligned_cols=83 Identities=19% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhh--cCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNI--EIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~--~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||.... ...... ... ..+.+++|+|.....+.. ..+..+.. ..+ .-+|+||+|...
T Consensus 61 ~~~~~l~Dt~G~~~~-~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (206)
T 2bov_A 61 EVQIDILDTAGQEDY-AAIRDN---YFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 133 (206)
T ss_dssp EEEEEEEECCCTTCC-HHHHHH---HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEcCCChhhh-HHHHHH---HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence 457899999997532 222211 111 247789999986543221 12222221 233 458999999643
Q ss_pred c----hhHHHHHHHHhCCCeEE
Q 011624 337 R----GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV~~ 354 (481)
. ...+...+...+.|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 134 KRQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEE
T ss_pred cccccHHHHHHHHHHhCCeEEE
Confidence 2 23445566667777633
No 212
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.20 E-value=0.00096 Score=61.08 Aligned_cols=82 Identities=20% Similarity=0.073 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHH---HHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALV---TTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~---~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... .... . ....+.+++|+|.....+.. ... ......-...-+|+||+|....
T Consensus 73 ~~~l~l~Dt~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRS-VTRS---Y--YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp EEEEEEECCTTHHHHSC-CCHH---H--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred eeEEEEEcCCCcHhHHH-HHHH---H--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 36789999999532110 0000 1 11357889999986553321 111 2221112235588999996321
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.++
T Consensus 147 ~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 147 EVTFLEASRFAQENELMF 164 (200)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233455556667665
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.20 E-value=0.00067 Score=67.98 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~r 223 (481)
.+|.++.++|++||||||++..|+..+.. .+.+|.++..|.|-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 46889999999999999999999887764 35689999999874
No 214
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.20 E-value=0.00058 Score=73.78 Aligned_cols=110 Identities=27% Similarity=0.324 Sum_probs=62.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCC--CCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE--VKPSQIAKQGLEE 260 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~--~~~~~~l~~~l~~ 260 (481)
..+++++|++|+||||++..++..+...|.+|++++ .+.+.. +.+ .+..+.+....... ..+ +.... ..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A-pT~~Aa--~~L---~e~~~~~a~Tih~ll~~~~-~~~~~--~~ 274 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA-PTGKAA--RRL---GEVTGRTASTVHRLLGYGP-QGFRH--NH 274 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-SSHHHH--HHH---HHHHTSCEEEHHHHTTEET-TEESC--SS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec-CcHHHH--HHh---HhhhcccHHHHHHHHcCCc-chhhh--hh
Confidence 458899999999999999999999999999998654 343322 233 22222222111000 000 00000 00
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeC
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda 305 (481)
.....+|++|||-+++++ ...+..+..... ....+++|-|.
T Consensus 275 ~~~~~~dvlIIDEasml~--~~~~~~Ll~~~~--~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMG--DALMLSLLAAVP--PGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCC--HHHHHHHHTTSC--TTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCC--HHHHHHHHHhCc--CCCEEEEEecc
Confidence 011368999999998864 445555433222 23457788775
No 215
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.20 E-value=0.0012 Score=68.61 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHhh-hcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFN-IEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f~-~~~~i~GvIlnKvD 333 (481)
.++.+.|+||||... ....+.. .....+.+++|+|+..+. ...+.+.... ..+...-+++||+|
T Consensus 82 ~~~~~~iiDtpG~~~----f~~~~~~--~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D 155 (435)
T 1jny_A 82 KKYFFTIIDAPGHRD----FVKNMIT--GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155 (435)
T ss_dssp SSCEEEECCCSSSTT----HHHHHHH--TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred CCeEEEEEECCCcHH----HHHHHHh--hhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence 567899999999754 2233322 223468899999996541 1111111111 12222457899999
Q ss_pred CCC
Q 011624 334 GDS 336 (481)
Q Consensus 334 ~~~ 336 (481)
...
T Consensus 156 l~~ 158 (435)
T 1jny_A 156 LTE 158 (435)
T ss_dssp GSS
T ss_pred CCC
Confidence 654
No 216
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.19 E-value=0.0017 Score=56.36 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHHH---HHHhhh-cCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAAL---VTTFNI-EIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~~---~~~f~~-~~~i~GvIlnKvD~~~~ 337 (481)
.+.+.|+||||.... ...... ... ..+.+++|+|.....+ .... +..+.. .-...-+|+||+|....
T Consensus 50 ~~~~~l~D~~G~~~~-~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 50 PSVLEILDTAGTEQF-ASMRDL---YIK--NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEEEEEEECCCTTCC-HHHHHH---HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCchhh-HHHHHH---Hhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 456889999996432 222221 111 2377899999865432 2211 222211 11234589999995321
Q ss_pred ----hhHHHHHHHHhCCCeEE
Q 011624 338 ----GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~~ 354 (481)
.......+...+.|+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFME 144 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEE
T ss_pred ccCCHHHHHHHHHHhCCCEEE
Confidence 23345566667877743
No 217
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.18 E-value=0.0015 Score=58.25 Aligned_cols=83 Identities=20% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHH---HHHhhhc-CCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFNIE-IGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~---~~~f~~~-~~i~GvIlnKvD~~~~ 337 (481)
.+.+.|+||||...... .... ... ..+.+++|+|.....+. ... +..+... -...-+|+||+|....
T Consensus 51 ~~~~~i~Dt~G~~~~~~-~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSA-MRDQ---YMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEEEEEEECCCC---CT-THHH---HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEEEEEEECCCcHHHHH-HHHH---HHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 35577899999643221 1111 111 24778999998654322 111 2222111 1234588999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 011624 338 ---GGAALSVKEVSGKPIK 353 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV~ 353 (481)
...+..++...+.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 125 TVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp SSCHHHHHHHHHHHTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 3445667777888873
No 218
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.17 E-value=0.00065 Score=67.01 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcC--Ce-EEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KS-CMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G--~k-VlLId~D~~r 223 (481)
.+|.+|+++|++||||||++..|+..|...| .+ +.+|..|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4678999999999999999999999988655 44 4454999863
No 219
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.16 E-value=0.00079 Score=60.90 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+.-|+++|.+||||||++..|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34678889999999999998874
No 220
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.15 E-value=0.0011 Score=72.04 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCCC-chhH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-RGGA 340 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~~-~~g~ 340 (481)
++.+.||||||... ...++...+.. .+.+++|+|+..+ ++..........+++ .-+++||+|... ....
T Consensus 70 ~~~l~liDTPGh~d----F~~ev~~~l~~--aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVD----FSYEVSRSLAA--CEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADPER 142 (599)
T ss_dssp EEEEEEEECCCCGG----GHHHHHHHHHH--CSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCchH----HHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccHHH
Confidence 47788999999854 33333333333 3889999999554 332222122222333 458899999643 2222
Q ss_pred -HHHHHHHhCCC
Q 011624 341 -ALSVKEVSGKP 351 (481)
Q Consensus 341 -~~~~~~~~glP 351 (481)
...+....+.+
T Consensus 143 v~~ei~~~lg~~ 154 (599)
T 3cb4_D 143 VAEEIEDIVGID 154 (599)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHhCCC
Confidence 34455556654
No 221
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.15 E-value=0.0029 Score=66.17 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+.-++++|.+|+||||+...|.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHh
Confidence 45678889999999999998875
No 222
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.15 E-value=0.0022 Score=63.86 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=83.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHH--HHHhhh---hcCCCeecCCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ--LVILGE---QVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidq--l~~~~~---~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
.+++++|++|+||||+...|+... .|+++++|..|.-.... +. +..... ...-.|+......+....+...+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~i-dg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSV-DDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCE-EEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCc-cHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 588999999999999998887543 68999999888532110 00 000000 00001111111122222233332
Q ss_pred HHHHcC--CCcEEEEcCCCCccccHHHHHHH---HhhhhccCCceEEEEEeCcchHHHHHHH-HHhhhcCCeeEEEEcCC
Q 011624 259 EEAKKK--NVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALV-TTFNIEIGITGAILTKL 332 (481)
Q Consensus 259 ~~~~~~--~~D~VIIDt~G~~~~d~~~~~el---~~i~~~~~p~~vvLVvda~~~~~~~~~~-~~f~~~~~i~GvIlnKv 332 (481)
...+.. .+|++++|+.+..... .+...+ ........-+.++-++|+.......... ..........-+|+||.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECc
Confidence 111223 3599999998865321 111111 1111111124566677874332211110 11111234556788999
Q ss_pred CCCCchhHHHHHHHH--hCCCeEEeecCC
Q 011624 333 DGDSRGGAALSVKEV--SGKPIKLVGRGE 359 (481)
Q Consensus 333 D~~~~~g~~~~~~~~--~glPV~~ig~g~ 359 (481)
|.......+...... .+.+|.++..++
T Consensus 161 dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 161 DVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred ccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 965332344444433 356776666654
No 223
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.14 E-value=0.0073 Score=67.05 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCcccc--------HHHHHHH-HhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCC
Q 011624 265 NVDVVIVDTAGRLQID--------KAMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 332 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d--------~~~~~el-~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKv 332 (481)
..+++||||||..... .....++ ..... -..+-+++|+|+..+ ++....+....+.-...-+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 3578999999986521 1122222 11221 234677889998542 343355555554333456899999
Q ss_pred CCCCchh
Q 011624 333 DGDSRGG 339 (481)
Q Consensus 333 D~~~~~g 339 (481)
|......
T Consensus 228 Dlv~~~~ 234 (772)
T 3zvr_A 228 DLMDEGT 234 (772)
T ss_dssp TSSCTTC
T ss_pred ccCCcch
Confidence 9765443
No 224
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.14 E-value=0.0031 Score=56.16 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HH---HHHHhh--hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AA---LVTTFN--IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~---~~~~f~--~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||...... .... ... ..+.+++|+|.....+. .. .+..+. ...+ .-+|.||+|...
T Consensus 65 ~~~l~i~Dt~G~~~~~~-~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSA-MREQ---YMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMH 137 (183)
T ss_dssp EEEEEEEECCSCGGGCS-SHHH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCST
T ss_pred EEEEEEEECCCchhhHH-HHHH---HHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchh
Confidence 34466799999643211 1111 111 24788999998655322 11 122211 1222 458899999632
Q ss_pred ----chhHHHHHHHHhCCCeEEee
Q 011624 337 ----RGGAALSVKEVSGKPIKLVG 356 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV~~ig 356 (481)
....+..++...+.|+..+.
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 138 LRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred ccCcCHHHHHHHHHHhCCeEEEec
Confidence 23445667777888874443
No 225
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.14 E-value=0.0014 Score=71.02 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhhcCCeeEEEEcCCCCCC-chhH
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-RGGA 340 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~~~~i~GvIlnKvD~~~-~~g~ 340 (481)
.+.+.||||||... ...++...+. ..+.+++|+|+..+ +...........+++ .-+++||+|... ....
T Consensus 72 ~~~inliDTPGh~d----F~~ev~r~l~--~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVD----FSYEVSRALA--ACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSADVDR 144 (600)
T ss_dssp EEEEEEECCCCSGG----GHHHHHHHHH--TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCcHh----HHHHHHHHHH--hCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccCHHH
Confidence 46788999999864 3334433333 34889999999654 222111111222333 457899999643 2222
Q ss_pred H-HHHHHHhCC
Q 011624 341 A-LSVKEVSGK 350 (481)
Q Consensus 341 ~-~~~~~~~gl 350 (481)
. ..+....++
T Consensus 145 v~~el~~~lg~ 155 (600)
T 2ywe_A 145 VKKQIEEVLGL 155 (600)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhhCC
Confidence 2 334444454
No 226
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.13 E-value=0.0011 Score=59.36 Aligned_cols=82 Identities=17% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhhcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNIEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||.... . ...... ....+.+++|+|+....+.. ..+..+...-...-+|+||+|....
T Consensus 58 ~~~~~l~Dt~G~~~~-~---~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 58 YVKLQIWDTAGQERF-R---SVTRSY--YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131 (186)
T ss_dssp EEEEEEEEECCSGGG-H---HHHHTT--STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHH-H---HHHHHH--HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 357899999996431 1 111111 22357889999986553321 1122222122235688999996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 132 EVTFLEASRFAQENELMF 149 (186)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233445555666665
No 227
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.13 E-value=0.0016 Score=56.81 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||.... ...... . ....+.+++|+|.....+. ......+.. .-...-+|.||+|...
T Consensus 42 ~~~~~~i~Dt~G~~~~-~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKI-RPLWRH---Y--FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SSCEEEEEECCCCGGG-HHHHHH---H--TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEEcCCChhh-HHHHHH---H--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 4577999999997432 111111 1 1245888999998654322 222222211 1223568899999754
Q ss_pred c
Q 011624 337 R 337 (481)
Q Consensus 337 ~ 337 (481)
.
T Consensus 116 ~ 116 (164)
T 1r8s_A 116 A 116 (164)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.0018 Score=58.25 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..-|+++|.+||||||+...|.. +..+. ..+ ..+......
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~-----~~~~~---~~~--------------t~~~~~~~~----------------- 55 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM-----NEVVH---TSP--------------TIGSNVEEI----------------- 55 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT-----TSCEE---EEC--------------CSCSSCEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhc-----CCCCc---CcC--------------CCccceEEE-----------------
Confidence 346788899999999999988751 22111 001 011111100
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---HHHHHHHHhhh----cCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---~~~~~~~~f~~----~~~i~GvIlnKvD~ 334 (481)
...++.+.|+||||...... .... . ....+.+++|+|++... ........+.. .-...-+|+||+|.
T Consensus 56 ~~~~~~~~i~Dt~G~~~~~~-~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 56 VINNTRFLMWDIGGQESLRS-SWNT---Y--YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp EETTEEEEEEECCC----CG-GGHH---H--HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHH-HHHH---H--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 01357799999999743211 1111 1 12358889999986542 22222222211 12235688999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 130 ~~ 131 (187)
T 1zj6_A 130 KE 131 (187)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.13 E-value=0.0011 Score=80.23 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecC--CCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GTEVKPSQIAKQGLE 259 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~--~~~~~~~~~l~~~l~ 259 (481)
++.++.+.|++|+||||++..+|...+++|.+|++++++--.. ++ ++...|++.-.. ....+..+ +.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~----~~--~a~~lGvd~~~L~I~~~~~~e~-il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PI--YARKLGVDIDNLLCSQPDTGEQ-ALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC----HH--HHHHTTCCTTTCEEECCSSHHH-HHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH----HH--HHHHcCCCHHHeEEeCCCCHHH-HHHHHH
Confidence 4679999999999999999999999999999999999985332 11 133344432110 01122233 333333
Q ss_pred HH-HcCCCcEEEEcCCCCc
Q 011624 260 EA-KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 260 ~~-~~~~~D~VIIDt~G~~ 277 (481)
.+ +..++++||||....+
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 32 2467999999997554
No 230
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.13 E-value=0.00064 Score=67.43 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=35.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+..+++.|++|+||||++..++..+...|.++..++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4568899999999999999999999888999999987654
No 231
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00062 Score=61.64 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
..+.+.|+||||.... ...... .. ...+.+++|+|.....+. . ..+..+...-...-+|.||+|....
T Consensus 70 ~~~~~~i~Dt~G~~~~-~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERY-RTITTA---YY--RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp TTEEEEEECHHHHHHC-HHHHHH---HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEEeCCChHHH-HHHHHH---HH--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 4567899999985321 111111 12 234788999998654322 1 2222222122235588999996322
Q ss_pred ----hhHHHHHHHHhCCCe
Q 011624 338 ----GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV 352 (481)
...+..++...+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 233455666778776
No 232
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.12 E-value=0.00033 Score=67.21 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=35.6
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~-----~G~kVlLId~D~~r 223 (481)
.+|.+|+++|++||||||++..|+..|.. .|++|.++++|-|-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 35789999999999999999999887653 36789999999763
No 233
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.10 E-value=0.0011 Score=59.72 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---H---HHHHHhh--hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFN--IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~---~~~~~f~--~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||........... .. ...+.+++|+|++...+. . ..+..+. ... ..-+|+||+|...
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~---~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 141 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQH---YY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI-PRILVGNKCDLRS 141 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHH---HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCC-CEEEEEECTTCGG
T ss_pred EEEEEEEECCCchhhhhhhhHH---Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccc
Confidence 4678999999963211011111 11 235788999998654322 1 1222221 122 3458899999643
Q ss_pred c----hhHHHHHHHHhCCCeE
Q 011624 337 R----GGAALSVKEVSGKPIK 353 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV~ 353 (481)
. ...+..++...+.++.
T Consensus 142 ~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 142 AIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp GCCSCHHHHHHHHHHTTCCEE
T ss_pred cceeCHHHHHHHHHHcCCEEE
Confidence 2 2334556666777763
No 234
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.08 E-value=0.00072 Score=60.66 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..-|+++|.+||||||+...|.. .+.. .+ ....|......
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~-----~~-----------~~t~~~~~~~~----------------- 60 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM------NEVV-----HT-----------SPTIGSNVEEI----------------- 60 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT------TSCE-----EE-----------ECCSSSSCEEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCC-----cc-----------CCcCceeeEEE-----------------
Confidence 446788899999999999988752 1111 00 00111111100
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---HHHHHHHHhhh----cCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---~~~~~~~~f~~----~~~i~GvIlnKvD~ 334 (481)
...++.+.|+||||...... . .... ....+.+++|+|+.... ........+.. .-...-+|+||+|.
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRS-S---WNTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTC-G---GGGG--GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHH-H---HHHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 11357799999999743211 1 0111 12357889999986542 22222222211 12235588999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 135 ~~ 136 (181)
T 2h17_A 135 KE 136 (181)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 235
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.07 E-value=0.0026 Score=61.62 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+|+||||+...|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 458889999999999998874
No 236
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.07 E-value=0.0021 Score=57.80 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..-|+++|.+||||||+...|. +.... .+.| ..|......
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~------~~~~~-----~~~~-----------t~g~~~~~~----------------- 55 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA------SEDIS-----HITP-----------TQGFNIKSV----------------- 55 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------CSCCE-----EEEE-----------ETTEEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCCC-----cccC-----------cCCeEEEEE-----------------
Confidence 35678889999999999998774 21111 1111 111111100
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh----cCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI----EIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~----~~~i~GvIlnKvD~ 334 (481)
...++.+.++||||..... .... ... ...+.+++|+|++...+.. .....+.. .-...-+|.||+|.
T Consensus 56 ~~~~~~l~i~Dt~G~~~~~-~~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 56 QSQGFKLNVWDIGGQRKIR-PYWR---SYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp EETTEEEEEEECSSCGGGH-HHHH---HHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHHHH-HHHH---HHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 0135678999999974321 1111 111 2358889999986543222 22222211 11234588999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 130 ~~ 131 (181)
T 1fzq_A 130 LT 131 (181)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 237
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.06 E-value=0.00054 Score=62.52 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||+...|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4567889999999999998775
No 238
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.06 E-value=0.0022 Score=56.64 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+|+||||+...|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999999998875
No 239
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.05 E-value=0.00076 Score=62.29 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH---HHHhhh----cCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~---~~~f~~----~~~i~GvIlnKvD~~~~ 337 (481)
.+.+.|+||||... ......... ...+.+++|+|+......... +..+.. .-...-+|+||+|....
T Consensus 83 ~~~l~l~Dt~G~~~----~~~~~~~~~--~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQER----FRSLTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHH----HHHHHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHh----HHhHHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 56789999999532 111111112 234788999999665443222 222221 11234588999996431
Q ss_pred ----hhHHHHHHHHhCCCeEE
Q 011624 338 ----GGAALSVKEVSGKPIKL 354 (481)
Q Consensus 338 ----~g~~~~~~~~~glPV~~ 354 (481)
...+..++...++|+..
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 157 REVNERQARELADKYGIPYFE 177 (217)
T ss_dssp CCSCHHHHHHHHHHTTCCEEE
T ss_pred cccCHHHHHHHHHHCCCcEEE
Confidence 23445566667777643
No 240
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.04 E-value=0.0044 Score=55.35 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA 204 (481)
-|+++|.+||||||+...|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999998875
No 241
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.005 Score=55.48 Aligned_cols=81 Identities=21% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH------HHHHHHhh---hcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA------AALVTTFN---IEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~------~~~~~~f~---~~~~i~GvIlnKvD~~ 335 (481)
.+.+.|+||||.... ...... ... ..+.+++|+|....... ...+..+. ...+ .-+|+||+|..
T Consensus 55 ~~~~~l~Dt~G~~~~-~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 55 VCTLQITDTTGSHQF-PAMQRL---SIS--KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEECCGGGSC-HHHHHH---HHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCChHHh-HHHHHH---hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 467899999996432 222111 111 23788999998654321 22222222 2333 45899999964
Q ss_pred Cc---hhHHHHHHHHhCCCe
Q 011624 336 SR---GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~---~g~~~~~~~~~glPV 352 (481)
.. ...+...+...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (199)
T 2gf0_A 128 QREVDTREAQAVAQEWKCAF 147 (199)
T ss_dssp SCSSCHHHHHHHHHHHTCEE
T ss_pred ccccCHHHHHHHHHHhCCeE
Confidence 32 233345556667665
No 242
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.02 E-value=0.0059 Score=65.10 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhhcCCeeEEEEcCCCCCCch--
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEIGITGAILTKLDGDSRG-- 338 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~~~~i~GvIlnKvD~~~~~-- 338 (481)
.++.+.|+||||.-.... .... .. ..++.+++|+|++...+. ...+..+....+ .-+|.||+|.....
T Consensus 96 ~~~~~~i~Dt~G~e~~~~-~~~~---~l--~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v 168 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHA-SHQF---FM--TRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNI 168 (535)
T ss_dssp TTCEEEEECCCSCCTTTT-TCHH---HH--HSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCC
T ss_pred ceEEEEEEECCcHHHHHH-HHHH---Hc--cCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC-EEEEEECCCccccccc
Confidence 367899999999532211 1111 11 125788999999655433 333444443344 45899999964322
Q ss_pred --hHHHHHHHHhCCCeEEee--cCCCCCC
Q 011624 339 --GAALSVKEVSGKPIKLVG--RGERMED 363 (481)
Q Consensus 339 --g~~~~~~~~~glPV~~ig--~g~~v~d 363 (481)
..+.......+.|+..+. .+.++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 169 EQKKINERFPAIENRFHRISCKNGDGVES 197 (535)
T ss_dssp CHHHHHHHCGGGTTCEEECCC-----CTT
T ss_pred CHHHHHHHHHhcCCceEEEecCcccCHHH
Confidence 223344445677775443 3344444
No 243
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.02 E-value=0.0018 Score=57.32 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||+...|.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999999998876
No 244
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.02 E-value=0.00078 Score=59.18 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhh----cCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~----~~~i~GvIlnKvD~~~~ 337 (481)
++.+.|+||||...... . .... ....+.+++|+|+... .........+.. .-...-+|+||+|....
T Consensus 50 ~~~~~~~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRP-Y---WRCY--YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp TEEEEEEEECCCGGGGG-G---GGGG--CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEEECCCChhhhH-H---HHHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 56789999999743111 1 1111 1245888999998544 222222222211 12235688999997543
No 245
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.01 E-value=0.0016 Score=67.68 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+.-++++|.+||||||+...|.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh
Confidence 45678889999999999998875
No 246
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.01 E-value=0.0022 Score=64.14 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~---G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~ 257 (481)
..+..++++|++|+||||++..++..+... +..+..+++..... ..+.+.......+.+.-. ......+.....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-PYRVLADLLESLDVKVPF--TGLSIAELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-HHHHHHHHTTTTSCCCCS--SSCCHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-HHHHHHHHHHHhCCCCCC--CCCCHHHHHHHH
Confidence 346688999999999999999999888765 78888888754321 111222223333333211 122233434333
Q ss_pred HHHHHcC-CCcEEEEcCCCCc
Q 011624 258 LEEAKKK-NVDVVIVDTAGRL 277 (481)
Q Consensus 258 l~~~~~~-~~D~VIIDt~G~~ 277 (481)
...+... ...++|||-+..+
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHH
T ss_pred HHHHhccCCeEEEEEcChhhh
Confidence 3333322 2568999976544
No 247
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.00 E-value=0.0018 Score=59.34 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+.-|+++|.+||||||+...|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4567889999999999998874
No 248
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.00 E-value=0.0025 Score=60.19 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+|+||++.|++||||||.+..|+..| |.. .+-..|.+|
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~---g~~-hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF---HFN-HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH---CCE-EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH---CCc-eEcHHHHHH
Confidence 468999999999999999999999766 443 334456665
No 249
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.0046 Score=62.07 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--------GKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~--------G~kVlLId~D~ 221 (481)
.+..++++|++|+||||++..++..+... +..+..+++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 45689999999999999999999988765 78888888654
No 250
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.99 E-value=0.0022 Score=55.86 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=43.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHH---HHH---HHHHhh--hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAA---LVTTFN--IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~---~~~---~~~~f~--~~~~i~GvIlnKvD~~ 335 (481)
..+.+.|+||||...... .... ... ..+.+++|+|.....+ ... .+..+. ...+ .-+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTA-MRDL---YMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTT-HHHH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHH-HHHH---Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 346789999999653221 1111 111 2377899999865432 111 222221 1233 45899999964
Q ss_pred Cc----hhHHHHHHHHh-CCCe
Q 011624 336 SR----GGAALSVKEVS-GKPI 352 (481)
Q Consensus 336 ~~----~g~~~~~~~~~-glPV 352 (481)
.. ...+...+... +.|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1c1y_A 122 DERVVGKEQGQNLARQWCNCAF 143 (167)
T ss_dssp GGCCSCHHHHHHHHHHTTSCEE
T ss_pred ccccCCHHHHHHHHHHccCCcE
Confidence 32 23344445544 5555
No 251
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.99 E-value=0.0021 Score=56.11 Aligned_cols=82 Identities=7% Similarity=-0.083 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh-----hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-----IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~-----~~~~i~GvIlnKvD~~ 335 (481)
..+.+.++||||..... ..... .. ...+.+++|.|.....+.. .....+. ... ..-+|.||+|..
T Consensus 47 ~~~~~~i~D~~g~~~~~-~~~~~---~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGR-WLPGH---CM--AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV-PIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CC-CEEEEEECTTCC
T ss_pred EEEEEEEEECCCCccch-hhhhh---hh--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEeccccc
Confidence 34678899999864321 11111 11 2347788999986543322 1112211 122 345889999964
Q ss_pred Cc----hhHHHHHHHHhCCCe
Q 011624 336 SR----GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~----~g~~~~~~~~~glPV 352 (481)
.. ...........+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~ 140 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKF 140 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEE
T ss_pred cccccCHHHHHHHHHHhCCcE
Confidence 22 223345555667666
No 252
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.98 E-value=0.0051 Score=62.54 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.+++++|.+|+||||+...|+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998886
No 253
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.98 E-value=0.0022 Score=58.91 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||++..|.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3467888999999999998875
No 254
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.98 E-value=0.0007 Score=61.21 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh-----hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN-----IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~-----~~~~i~GvIlnKvD~~ 335 (481)
.++.+.|+||||.... ........ ...+.+++|+|++...+. ...+..+. ... ..-+|+||+|..
T Consensus 65 ~~~~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRF----RSMWERYC--RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI-PVLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHH----HTTHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-CEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhH----HHHHHHHH--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC-CEEEEEECCCCc
Confidence 4678999999996421 11111111 235788999998654322 22222221 122 345889999975
Q ss_pred C
Q 011624 336 S 336 (481)
Q Consensus 336 ~ 336 (481)
.
T Consensus 138 ~ 138 (188)
T 1zd9_A 138 G 138 (188)
T ss_dssp T
T ss_pred c
Confidence 4
No 255
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.96 E-value=0.0008 Score=60.02 Aligned_cols=110 Identities=24% Similarity=0.284 Sum_probs=57.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++.-|+++|.+||||||+...|. +.+.. .+.| ..+......
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~------~~~~~-----~~~~-----------t~~~~~~~~----------------- 57 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ------IGEVV-----TTKP-----------TIGFNVETL----------------- 57 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSEEE-----EECS-----------STTCCEEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCcC-----ccCC-----------cCccceEEE-----------------
Confidence 45678889999999999997764 22221 1111 111111100
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---HHHHHHHHhhh----cCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---~~~~~~~~f~~----~~~i~GvIlnKvD~ 334 (481)
...++.+.++||||....... . .. .....+.+++|+|+.... ........+.. .-...-+|+||+|.
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~-~---~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 58 SYKNLKLNVWDLGGQTSIRPY-W---RC--YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp EETTEEEEEEEEC----CCTT-G---GG--TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH-H---HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 113467899999997432110 0 01 112347889999985442 22232333221 12245688999996
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 132 ~~ 133 (183)
T 1moz_A 132 PG 133 (183)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.96 E-value=0.019 Score=54.32 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
++.+|++.|++|+||||++..|+..|.. |..|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 5789999999999999999999999988 8888643
No 257
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.95 E-value=0.0025 Score=57.92 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||...... .... .. ...+.+++|+|+....+. ...+..+.. .-...-+|+||+|...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~-~~~~---~~--~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRP-LWRH---YF--QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TTEEEEEEECC-----CT-THHH---HH--HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHH-HHHH---Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 457799999999743211 1111 11 134788999999655322 222222211 1223568899999754
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.95 E-value=0.00086 Score=61.84 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+|.+|+++|.+||||||++..|+..|...|..|..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4679999999999999999999999998899885443
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.017 Score=54.66 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=45.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.++-+++.|++|+||||++..+|..+ +..+..+++..+...+ .......+...+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI--------------------GGLGAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS--------------------TTHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc--------------------cChhHHHHHHHHHHH
Confidence 45678899999999999999998765 5666766665432110 001122334455555
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-...+
T Consensus 95 ~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 95 RARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHTCSEEEEEECC---
T ss_pred HhcCCeEEEEeCcchh
Confidence 4455789999987654
No 260
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.0053 Score=61.34 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=55.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~------G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~ 255 (481)
.+..++++|++|+||||++..++..+... +..+..+++....... +-+.......+.+.-. ......+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~~--~~~~~~~~~~ 119 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY-RVASAIAEAVGVRVPF--TGLSVGEVYE 119 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-HHHHHHHHHHSCCCCS--SCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-HHHHHHHHHhCCCCCC--CCCCHHHHHH
Confidence 45688999999999999999999888664 6777778876554211 1111122222332211 1223344444
Q ss_pred HHHHHHHc-CCCcEEEEcCCCCcc
Q 011624 256 QGLEEAKK-KNVDVVIVDTAGRLQ 278 (481)
Q Consensus 256 ~~l~~~~~-~~~D~VIIDt~G~~~ 278 (481)
.....+.. +...+++||-...+.
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHhccCCeEEEEEccHhhhc
Confidence 44444322 224589999887654
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.92 E-value=0.0072 Score=58.94 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=36.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
...+++.|++|+||||++..|+..+...+..+..+++..+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 357899999999999999999999887777888888887653
No 262
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.91 E-value=0.0013 Score=70.74 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
...|+++|.+|+||||++..|.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4578889999999999998886
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00049 Score=61.52 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
|.+|+++|++||||||++..|+.. .....+++.|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 578999999999999999988762 2345667777554
No 264
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00089 Score=62.42 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHHhh---hcCCeeEEEEcCCCCCCc-
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR- 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~f~---~~~~i~GvIlnKvD~~~~- 337 (481)
.+.+.|+||||...... +. ... ....+.+++|+|.....+... ....+. ..-...-+|+||+|....
T Consensus 61 ~~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRA-IT---SAY--YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EEEEEEECCTTTTTTTC-CC---GGG--TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred EEEEEEEECCCccchhh-hH---HHH--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 36789999999643110 00 001 123477899999865533221 122221 111234578999996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 011624 338 ---GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 ---~g~~~~~~~~~glPV 352 (481)
...+...+...+.|+
T Consensus 135 ~v~~~~~~~~~~~~~~~~ 152 (223)
T 3cpj_B 135 AVPTEESKTFAQENQLLF 152 (223)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233455556666665
No 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.90 E-value=0.0011 Score=59.39 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..++++|.+||||||+...|+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999998875
No 266
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.90 E-value=0.034 Score=54.02 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCC----eEEEEec
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAG 219 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~----kVlLId~ 219 (481)
.+.-+++.|++|+|||+++..+|..+...+. .+..+++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3457899999999999999999999987654 5555553
No 267
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.89 E-value=0.0011 Score=59.75 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhh-------hcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-------IEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~-------~~~~i~GvIlnKvD 333 (481)
.++.+.|+||||...... .. ... ....+.+++|+|+....+.. .....+. ... ..-+|+||+|
T Consensus 65 ~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D 137 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRN-LW---EHY--YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI-PILFFANKMD 137 (190)
T ss_dssp SSCEEEEEEECCSTTTGG-GG---GGG--GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCC-CEEEEEECTT
T ss_pred CCEEEEEEECCCCHHHHH-HH---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCC-eEEEEEeCcC
Confidence 357899999999643211 11 111 12348889999996653322 2222221 122 3458899999
Q ss_pred CCC
Q 011624 334 GDS 336 (481)
Q Consensus 334 ~~~ 336 (481)
...
T Consensus 138 l~~ 140 (190)
T 2h57_A 138 LRD 140 (190)
T ss_dssp STT
T ss_pred ccc
Confidence 754
No 268
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.89 E-value=0.00084 Score=62.36 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
..+.+.|+||||...... +... . ....+.+++|+|.....+.. ..+..+....+ .-+|+||+|....
T Consensus 62 ~~~~~~i~Dt~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGG-LRDG---Y--YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSC-CCHH---H--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhH-HHHH---H--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 356789999999642211 1111 1 11347889999986553321 12222222333 4588999996432
Q ss_pred --hhHHHHHHHHhCCCe
Q 011624 338 --GGAALSVKEVSGKPI 352 (481)
Q Consensus 338 --~g~~~~~~~~~glPV 352 (481)
.......+...+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQY 151 (221)
T ss_dssp SSCGGGCCHHHHHTCEE
T ss_pred cccHHHHHHHHHcCCEE
Confidence 222334455556665
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.00043 Score=62.07 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
|.+|+++|++||||||++..|+..| |.....++.|.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 5689999999999999999988665 445555667754
No 270
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.88 E-value=0.0028 Score=56.76 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=59.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+..-|++.|.+||||||+...|. +.+. ..+.|. .+......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~~-----~~~~~t-----------~~~~~~~~----------------- 57 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GEDV-----DTISPT-----------LGFNIKTL----------------- 57 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCCC-----SSCCCC-----------SSEEEEEE-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCCC-----Cccccc-----------CccceEEE-----------------
Confidence 45678889999999999998775 2110 111111 11111100
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh----cCCeeEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDG 334 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~----~~~i~GvIlnKvD~ 334 (481)
...++.+.|+||||.... ...... .....+.+++|+|++...+. ......+.. .-...-+|+||+|.
T Consensus 58 ~~~~~~~~~~Dt~G~~~~----~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 58 EHRGFKLNIWDVGGQKSL----RSYWRN--YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp EETTEEEEEEEECCSHHH----HTTGGG--GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhH----HHHHHH--HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 013567899999997321 111111 12245788999998654322 222222211 12345689999997
Q ss_pred CC
Q 011624 335 DS 336 (481)
Q Consensus 335 ~~ 336 (481)
..
T Consensus 132 ~~ 133 (186)
T 1ksh_A 132 PG 133 (186)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 271
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.87 E-value=0.0018 Score=66.61 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=36.8
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhh-hcCCeeEEEEcCCCCCCc
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDSR 337 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~-~~~~i~GvIlnKvD~~~~ 337 (481)
..+.|+||||... ....+.... ...+.+++|+|+..+ ....+.+.... ......-+++||+|....
T Consensus 75 ~~~~iiDtPGh~~----~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 75 RRISFIDAPGHEV----LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EEEEEEECCCCGG----GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred ceEEEEECCCcHH----HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence 5789999999643 222222222 235889999999543 12222221111 122234578999997543
No 272
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.87 E-value=0.0014 Score=62.76 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=33.7
Q ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 179 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 179 ~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
...++.+|++.|++|+||||.+..|+.+|...|.++.+..-.|
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 3345789999999999999999999999999999933344444
No 273
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.00095 Score=61.22 Aligned_cols=38 Identities=37% Similarity=0.377 Sum_probs=33.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
+..+++.|++|+||||++..++..+..+|.+|.++++.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 36788999999999999999999999889999988764
No 274
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.85 E-value=0.001 Score=69.91 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH---------HHHHHHHHh-hhcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~---------~~~~~~~~f-~~~~~i~GvIlnKvD 333 (481)
.+..+.|+||||... +...+. .....++.++||+|+..+. ...+.+... ...++-.-+++||+|
T Consensus 119 ~~~~~~iiDtPGh~~----f~~~~~--~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKG----YVTNMI--NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CCeEEEEEECCCcHH----HHHHHH--hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 356789999999743 222221 1223468899999996542 122222111 112322357899999
Q ss_pred CC
Q 011624 334 GD 335 (481)
Q Consensus 334 ~~ 335 (481)
..
T Consensus 193 l~ 194 (467)
T 1r5b_A 193 EP 194 (467)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 275
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.84 E-value=0.0016 Score=58.93 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHH-------HHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-------VTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~-------~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..+.+.|+||||..... .+. .......+.+++|+|.....+.... +..+.... ..-+|.||+|...
T Consensus 69 ~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYD-----RLR-PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEEEEECCSGGGT-----TTG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTS-EEEEEEECGGGCC
T ss_pred EEEEEEEEECCCcHHHH-----HHh-HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEChhhcc
Confidence 34567999999964211 010 0111235788999999765443322 22222222 3458899999532
Q ss_pred ------chhHHHHHHHHhCCC-e
Q 011624 337 ------RGGAALSVKEVSGKP-I 352 (481)
Q Consensus 337 ------~~g~~~~~~~~~glP-V 352 (481)
....+...+...+.+ +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
T 3reg_A 142 DGSDDVTKQEGDDLCQKLGCVAY 164 (194)
T ss_dssp TTTTCCCHHHHHHHHHHHTCSCE
T ss_pred CCCCcccHHHHHHHHHhcCCCEE
Confidence 133445666677776 5
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.84 E-value=0.001 Score=61.43 Aligned_cols=38 Identities=39% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.+++++|++|+||||++..|+..+.. ++.+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 5679999999999999999999876642 5899999875
No 277
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.0013 Score=59.81 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+|++.|+.||||||++..|+..|...|.+|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6889999999999999999999998999987544
No 278
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.83 E-value=0.0016 Score=61.29 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=34.6
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
.+..+.+++|+-|+||||.+..++..+..+|++|+++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34679999999999999999999999999999999875
No 279
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.83 E-value=0.00033 Score=75.98 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLANY 206 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~ 206 (481)
.-|+++|.+++||||++..|...
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45788999999999999998654
No 280
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.83 E-value=0.0058 Score=55.76 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh-----hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN-----IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~-----~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||+|.......+... ... ..+.+++|.|.+...+. ......+. ... ..-+|.||+|...
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~---~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 144 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDH---CLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL-PVILVGNKSDLAR 144 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC-CEEEEEECTTCTT
T ss_pred EEEEEEEecCCCccchhhhHHH---hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEeechhccc
Confidence 4567889999875322112111 111 24778999998654322 22222221 122 2458899999643
Q ss_pred c----hhHHHHHHHHhCCCe
Q 011624 337 R----GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV 352 (481)
. ...+..++...+.++
T Consensus 145 ~~~v~~~~~~~~a~~~~~~~ 164 (195)
T 3cbq_A 145 SREVSLEEGRHLAGTLSCKH 164 (195)
T ss_dssp TCCSCHHHHHHHHHHTTCEE
T ss_pred cCCcCHHHHHHHHHHhCCEE
Confidence 2 223344555566554
No 281
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.0021 Score=58.71 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhhh-----cCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI-----EIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~~-----~~~i~GvIlnKvD~~ 335 (481)
..+.+.|+||||...... . . .......+.+++|+|.....+. ......+.. .. ..-+|+||+|..
T Consensus 70 ~~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSI-L---P--YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV-PVVLVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCC-C---C--GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CC-CEEEEEECTTCG
T ss_pred EEEEEEEEECCCccchHH-H---H--HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccCc
Confidence 467789999999643210 0 0 0111235788999998654322 222222211 22 345889999953
Q ss_pred Cc----hhHHHHHHHHhCCCe
Q 011624 336 SR----GGAALSVKEVSGKPI 352 (481)
Q Consensus 336 ~~----~g~~~~~~~~~glPV 352 (481)
.. ...+...+...+.|+
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~ 163 (201)
T 3oes_A 143 PEREVQAVEGKKLAESWGATF 163 (201)
T ss_dssp GGCCSCHHHHHHHHHHHTCEE
T ss_pred cccccCHHHHHHHHHHhCCeE
Confidence 21 233455666777766
No 282
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.80 E-value=0.0025 Score=56.67 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---HHHHh----h-hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF----N-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~~~~f----~-~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||...... .. . ......+.+++|+|.....+... ....+ . ... ..-+|.||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSI-FP---Q--TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI-PIMLVGNKKDLHM 125 (181)
T ss_dssp EEEEEEEECCCCCTTCC-CC---G--GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----C-CEEEEEECTTCTT
T ss_pred EEEEEEEeCCCchhhhH-HH---H--HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccchh
Confidence 46788999999643210 00 0 01113478899999865433221 11111 1 122 3458899999632
Q ss_pred ----chhHHHHHHHHhCCCe
Q 011624 337 ----RGGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV 352 (481)
....+...+...+.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~ 145 (181)
T 3t5g_A 126 ERVISYEEGKALAESWNAAF 145 (181)
T ss_dssp TCCSCHHHHHHHHHHTTCEE
T ss_pred cceecHHHHHHHHHHhCCcE
Confidence 1334456666777765
No 283
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.79 E-value=0.0038 Score=57.76 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+.-|+++|.+||||||++..|.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 4568889999999999998875
No 284
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.79 E-value=0.0051 Score=63.57 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+|.+|+++|++|+||||++..|+..+ | ..+|+.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccchHH
Confidence 357899999999999999998887543 3 4667888763
No 285
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.78 E-value=0.0016 Score=69.07 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=59.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
++.++++.|..|+||||++..|...-...+. ..|+.........
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-----------------------~~GIT~~i~~~~v------------- 46 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-----------------------AGGITQHIGAYHV------------- 46 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-----------------------BCCCCCCSSCCCC-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-----------------------CCCeeEeEEEEEE-------------
Confidence 5668899999999999999887532111110 0111111000000
Q ss_pred HcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEcCCCCC
Q 011624 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
...+..+.|+||||..... ... .......+.++||+|+..+ + +....+.. ..++ .-+++||+|..
T Consensus 47 ~~~~~~i~~iDTPGhe~f~----~~~--~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFT----SMR--ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVP-VVVAVNKIDKP 116 (501)
T ss_dssp CTTSSCCCEECCCTTTCCT----TSB--CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCC-EEEEEECSSSS
T ss_pred EECCEEEEEEECCCcHHHH----HHH--HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCce-EEEEEEecccc
Confidence 0134578999999974321 111 1112235788999998543 2 22222222 2344 45889999964
No 286
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.77 E-value=0.0024 Score=57.99 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH---HHHHHHhh-----hcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN-----IEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~---~~~~~~f~-----~~~~i~GvIlnKvD~~ 335 (481)
.++.+.++||||...... .. ... ....+.+++|+|++...+. ......+. ... ..-+|.||+|..
T Consensus 65 ~~~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~ 137 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARR-LW---KDY--FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV-PFVILGNKIDAP 137 (190)
T ss_dssp TTEEEEEEECCCSGGGTT-SG---GGG--CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-CEEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHH-HH---HHH--HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCC-CEEEEEECCCCc
Confidence 346789999999743211 00 011 1245788999999655332 22222221 122 345889999975
Q ss_pred C
Q 011624 336 S 336 (481)
Q Consensus 336 ~ 336 (481)
.
T Consensus 138 ~ 138 (190)
T 1m2o_B 138 N 138 (190)
T ss_dssp T
T ss_pred C
Confidence 4
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0013 Score=60.29 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
++.+|++.|++||||||++..|+..|...| +|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 367899999999999999999999987777 66543
No 288
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.76 E-value=0.001 Score=72.39 Aligned_cols=42 Identities=45% Similarity=0.709 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+|+++|.+||||||++..|+..|.++|..+..+|.|..|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 678999999999999999999999999899999988887654
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.0013 Score=60.49 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
++.+|+++|.+||||||++..|+..|...+..|.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999988888885443
No 290
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.73 E-value=0.0016 Score=59.75 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+.+++++|+.|+||||++..++..+..+|++|+++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458899999999999999999999988999999764
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.72 E-value=0.0017 Score=58.69 Aligned_cols=34 Identities=41% Similarity=0.618 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
+|+++|.+||||||++..|+..|...|..|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6889999999999999999999988898876443
No 292
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.72 E-value=0.003 Score=64.35 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=55.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
.|+++|..++||||++..|. ++| ++.| +..... ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~------------------~~~~~~-----------------~~~ 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----KKG-----TSSD------------------ITMYNN-----------------DKE 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----EEE-----EESS------------------SEEEEE-----------------CSS
T ss_pred EEEEECCCCCCHHHHHHHHH----hCC-----EEEE------------------eeEEEE-----------------ecC
Confidence 78899999999999998875 111 1111 111110 124
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---H--HHHHHHHHhhhcCCeeEEEEc-CCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILT-KLDG 334 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~--~~~~~~~~f~~~~~i~GvIln-KvD~ 334 (481)
++.+.|+||||.... ...+.... ...+.+++|+| ..+ + +....+..+ .++..-+++| |+|.
T Consensus 59 ~~~i~iiDtPGh~~f----~~~~~~~~--~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 59 GRNMVFVDAHSYPKT----LKSLITAL--NISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST 125 (370)
T ss_dssp SSEEEEEECTTTTTC----HHHHHHHH--HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS
T ss_pred CeEEEEEECCChHHH----HHHHHHHH--HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC
Confidence 567999999997542 22222222 23588999999 433 1 112222222 2344357888 9998
No 293
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.72 E-value=0.003 Score=61.75 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=29.4
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..+|.+|+++|++||||||++..|+. .|.. +|++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg~~--~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN----LGAY--IIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH----HTCE--EEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----CCCc--EEehhHH
Confidence 34678999999999999999988873 3654 5788754
No 294
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.71 E-value=0.0043 Score=68.49 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..|+++|.+|+||||++..|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999887
No 295
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.71 E-value=0.0031 Score=57.56 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH-------HHHHhhhcCCeeEEEEcCCCCCCc
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-------LVTTFNIEIGITGAILTKLDGDSR 337 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~-------~~~~f~~~~~i~GvIlnKvD~~~~ 337 (481)
.+.+.|+||||..... .+.. ......+.+++|+|......... .+..+....+ .-+|+||+|....
T Consensus 72 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 2gco_A 72 QVELALWDTAGQEDYD-----RLRP-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEEECCCCSGGGT-----TTGG-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC
T ss_pred EEEEEEEECCCchhHH-----HHHH-HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC
Confidence 4678999999964211 0100 11223578899999865433222 2222222343 4589999997543
No 296
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.70 E-value=0.0039 Score=60.18 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=44.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+.-+++.|++|+||||++..+|..+ +..+..+.+..+.... .......+...+..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF--------------------IGEGASLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS--------------------TTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc--------------------cchHHHHHHHHHHHH
Confidence 45678899999999999999987654 5666655543221110 011223344555555
Q ss_pred HcCCCcEEEEcCCCC
Q 011624 262 KKKNVDVVIVDTAGR 276 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~ 276 (481)
......+++||-...
T Consensus 107 ~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDA 121 (285)
T ss_dssp HHTCSEEEEEETTHH
T ss_pred HHcCCeEEEEECHHH
Confidence 545667999987643
No 297
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0077 Score=54.52 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHH------HHHHHHhh--hcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA------AALVTTFN--IEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~------~~~~~~f~--~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||... ...... ... ..+.+++|+|.+...+. ...+..+. ... ..-+|.||+|...
T Consensus 75 ~~~~~l~Dt~G~~~--~~~~~~---~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED--TIQREG---HMR--WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV-TLILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEECCCCCC--CHHHHH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCC-CEEEEEECGGGGG
T ss_pred EEEEEEEECCCCCc--ccchhh---hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCC-cEEEEEECccccc
Confidence 46789999999754 112111 111 23778999998654322 12222222 122 2458899999643
Q ss_pred c----hhHHHHHHHHhCCCe
Q 011624 337 R----GGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ~----~g~~~~~~~~~glPV 352 (481)
. ...+...+...+.|+
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~ 166 (196)
T 2atv_A 147 SRQVSTEEGEKLATELACAF 166 (196)
T ss_dssp GCCSCHHHHHHHHHHHTSEE
T ss_pred ccccCHHHHHHHHHHhCCeE
Confidence 1 234455666667766
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.69 E-value=0.01 Score=60.07 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=58.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCC-CCCHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEE 260 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~-~~~~~~~l~~~l~~ 260 (481)
..+++++|++|+||||+...|+..+... |.++..+. |+..... ......+.-...+. ..... +++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~------~~~~~~v~q~~~~~~~~~~~----~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH------ESKKCLVNQREVHRDTLGFS----EALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC------CCSSSEEEEEEBTTTBSCHH----HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh------hccccceeeeeeccccCCHH----HHHHH
Confidence 4599999999999999999999888765 66665443 4321100 00000011111111 12222 34555
Q ss_pred HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc
Q 011624 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (481)
Q Consensus 261 ~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~ 307 (481)
+...+.|++++|=|- |......+.+.... -..++.++....
T Consensus 192 aL~~~PdvillDEp~----d~e~~~~~~~~~~~--G~~vl~t~H~~~ 232 (356)
T 3jvv_A 192 ALREDPDIILVGEMR----DLETIRLALTAAET--GHLVFGTLHTTS 232 (356)
T ss_dssp HTTSCCSEEEESCCC----SHHHHHHHHHHHHT--TCEEEEEESCSS
T ss_pred HhhhCcCEEecCCCC----CHHHHHHHHHHHhc--CCEEEEEEccCh
Confidence 545789999999986 33333333333221 244566655533
No 299
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.68 E-value=0.0018 Score=57.55 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|++.|.+|+||||+...+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 3457788999999999997765
No 300
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.68 E-value=0.0012 Score=74.42 Aligned_cols=64 Identities=19% Similarity=0.383 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchH--HHHHHHHH-hhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTT-FNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~--~~~~~~~~-f~~~~~i~GvIlnKvD~~ 335 (481)
++.+.||||||...... +...... ..+.+++|+|+..+. ........ ...+++ .-+++||+|..
T Consensus 97 ~~~i~liDTPG~~df~~----~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS----EVTAALR--VTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCH----HHHHHHH--TCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CceEEEEECcCchhhHH----HHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcc
Confidence 57789999999865332 2222223 248899999996541 11222221 122333 45899999954
No 301
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.67 E-value=0.0067 Score=64.83 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=35.7
Q ss_pred CEEEEEE-cC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~-G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+.|+++ |. +|+||+++++.|++.|+++|++|..+-.|||
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py 53 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY 53 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence 3567777 77 9999999999999999999999999999876
No 302
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.67 E-value=0.0011 Score=60.98 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+++++|.+||||||++.+|+.. |.+|.+++...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 3678999999999999998744 77788887743
No 303
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.013 Score=55.14 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHH-HHHcCC--eEEEEeccCCchhHHHHHHHhhhhcCCCe----e-c---------CCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANY-LKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPV----Y-T---------AGT 246 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~-L~~~G~--kVlLId~D~~rp~aidql~~~~~~~gv~v----~-~---------~~~ 246 (481)
..+++.|++|+||||+...+... +...+. .+.++-..+.|..+......+....+..+ - . .+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999877665543 333343 44445555666544433333332222211 0 0 000
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCccccHHHH-HHHHhhhhccCCceEEEEEeCcchHH
Q 011624 247 ---EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEVLLVVDAMTGQE 310 (481)
Q Consensus 247 ---~~~~~~~l~~~l~~~~~~~~D~VIIDt~G~~~~d~~~~-~el~~i~~~~~p~~vvLVvda~~~~~ 310 (481)
...|. .+.+.+.. ...+++++|||-+-....+.... ..+..+.... +..-++++.|+...+
T Consensus 157 ~Ivv~Tpg-~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 157 SIMFCTVG-VLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTS 221 (235)
T ss_dssp EEEEEEHH-HHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCH
T ss_pred eEEEECHH-HHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHH
Confidence 11233 33333333 24688999999986643333333 3444444433 344467778865543
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.66 E-value=0.0016 Score=58.86 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+|.+|+++|++||||||++..|+..| |.. +++.|.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RLP--LLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHHHHH
Confidence 57899999999999999999998876 444 46666554
No 305
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.042 Score=54.72 Aligned_cols=102 Identities=5% Similarity=0.021 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeccCCchh--HHHHHHHhhhhcCCCeecCCCCCCHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-------GKSCMLVAGDVYRPA--AIDQLVILGEQVGVPVYTAGTEVKPSQ 252 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-------G~kVlLId~D~~rp~--aidql~~~~~~~gv~v~~~~~~~~~~~ 252 (481)
+|..+.++|++|+|||+++..++..|.+. +..++.|+|-..... ....+ +....|.... .....+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I--~~~L~g~~~~----~~~~~~ 117 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI--WFAISKENLC----GDISLE 117 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH--HHHHSCCC------CCCCHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH--HHHhcCCCCC----chHHHH
Confidence 46688999999999999999999999753 346777777655422 22222 2222333211 112234
Q ss_pred HHHHHHHHH--HcCCCcEEEEcCCCCccccHHHHHHHHhh
Q 011624 253 IAKQGLEEA--KKKNVDVVIVDTAGRLQIDKAMMDELKDV 290 (481)
Q Consensus 253 ~l~~~l~~~--~~~~~D~VIIDt~G~~~~d~~~~~el~~i 290 (481)
.+...+..+ .....-+|++|-.-.+. +...+..+-.+
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~ 156 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKW 156 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhc
Confidence 455555543 11334478889887765 44455554443
No 306
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.64 E-value=0.006 Score=65.13 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=35.0
Q ss_pred EEEEEE-cC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~-G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+.|+++ |. +|+||+++++.|++.|+++|++|..+-.|||
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py 44 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY 44 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccc
Confidence 466776 77 9999999999999999999999999999876
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.63 E-value=0.0012 Score=71.25 Aligned_cols=44 Identities=32% Similarity=0.503 Sum_probs=38.9
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeccCCc
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYR 223 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G-~kVlLId~D~~r 223 (481)
.+++.+|+++|.+||||||++..|+..|..+| +++.++|.|..|
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 34678999999999999999999999999888 899999988654
No 308
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.63 E-value=0.0017 Score=70.38 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLAN 205 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~ 205 (481)
++.+|++.|.+|+||||++..|..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 355889999999999999988863
No 309
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.63 E-value=0.0018 Score=64.13 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~--~~G~kVlLId~D~~r 223 (481)
.++.+++++|++|+||||++..|+..+. -.+-+|.++++|-+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3578999999999999999999988776 345678889998764
No 310
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.62 E-value=0.0022 Score=68.86 Aligned_cols=43 Identities=35% Similarity=0.583 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
+.+.+|+++|.+|+||||++..|+..|..+|+++.++|.|..|
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 3468999999999999999999999999999999999988643
No 311
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.61 E-value=0.00048 Score=63.58 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+|++.|++||||||++..|+..|...|.+|.++.-+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~ 38 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 7889999999999999999999998899988776443
No 312
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.61 E-value=0.0021 Score=58.71 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++.+|++.|++||||||++..|+..| .|.++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~ 39 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFP 39 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecC
Confidence 45789999999999999999998776 46777766543
No 313
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.61 E-value=0.0016 Score=63.99 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
..|+.+++.|++|+|||+++..+|..+ |.++..+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 357788999999999999999999877 667776654
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.59 E-value=0.0031 Score=58.99 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHHcC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~~~ 264 (481)
+|++.|++||||+|.+..|+..+ |. +.+-.+|.+|......- .++.... ..+.. ...-|.+++...+.... .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~-~~istGdllR~~i~~~t-~lg~~~~-~~~~~-G~lvpd~iv~~lv~~~l-~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GF-VHISTGDILREAVQKGT-PLGKKAK-EYMER-GELVPDDLIIALIEEVF-P 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC-EEEEHHHHHHHHHHHTC-HHHHHHH-HHHHH-TCCCCHHHHHHHHHHHC-C
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC-eEEcHHHHHHHHHHhcC-hhhhhHH-HHHhc-CCcCCHHHHHHHHHHhh-c
Confidence 67888999999999999999766 44 34456777774321100 0111000 01111 12335666666666653 4
Q ss_pred CCcEEEEcCCCCcc
Q 011624 265 NVDVVIVDTAGRLQ 278 (481)
Q Consensus 265 ~~D~VIIDt~G~~~ 278 (481)
..+-+|+|+-|+.-
T Consensus 74 ~~~~~ilDGfPRt~ 87 (206)
T 3sr0_A 74 KHGNVIFDGFPRTV 87 (206)
T ss_dssp SSSCEEEESCCCSH
T ss_pred cCCceEecCCchhH
Confidence 45668899987753
No 315
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.59 E-value=0.0024 Score=60.03 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
++.+|++.|+.|+||||.+..|+.+|..+|++|.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467999999999999999999999999999999643
No 316
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.59 E-value=0.00075 Score=62.39 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH------HHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~------~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
+.+.|+||||...... .... . ....+.+++|+|+....+.. ..+......-...-+|+||+|...
T Consensus 61 ~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAV-LKDV---Y--YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGGGTSC-CCHH---H--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCchhhch-HHHH---H--hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 6689999999643211 1111 0 11347889999997653322 222222211123458899999643
No 317
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.58 E-value=0.0044 Score=65.39 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HH--HHHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~--~~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||... ....+... ....+.++||+|+..+ +. ....++.. .+++ -+++||+|...
T Consensus 71 ~~~~i~iiDtPGh~~----~~~~~~~~--~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~-IvviNK~Dl~~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHAD----LIRAVVSA--ADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPI-IVVITKSDNAG 139 (482)
T ss_dssp TTEEEEECCCSSHHH----HHHHHHHH--TTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCB-CEEEECTTSSC
T ss_pred CCEEEEEEECCChHH----HHHHHHHH--HhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCE-EEEEECCCccc
Confidence 356799999999632 33333222 2345889999999652 32 22223322 3444 68999999754
No 318
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0083 Score=54.01 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH-------HHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-------ALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~-------~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||...... +. .......+.+++|+|.....+.. ..+..+.+..+ .-+|.||+|...
T Consensus 65 ~~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDR-----LR-PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp EEEEEEECCCCSSSSTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEECCCCcchhH-----HH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 46788999999753211 10 01122357889999986553322 22222222333 458999999754
No 319
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.56 E-value=0.005 Score=64.12 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=34.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~--G~kVlLId~D~~ 222 (481)
+.-+++.|++|+||||++..++..+... |.++..+++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4568899999999999999999988776 888998887754
No 320
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.54 E-value=0.0019 Score=58.06 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=37.5
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcch---HHHHHHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~---~~~~~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
.++.+.|+||||...... .. . ......+.+++|+|++.. .........+.. .-...-+|+||+|...
T Consensus 64 ~~~~~~~~Dt~G~~~~~~-~~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRP-YW---R--CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp TTEEEEEEEECCSSSSCC-CC---S--SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHH-HH---H--HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 356789999999643210 00 0 011235788999998544 222222332211 1224568899999754
Q ss_pred c
Q 011624 337 R 337 (481)
Q Consensus 337 ~ 337 (481)
.
T Consensus 138 ~ 138 (189)
T 2x77_A 138 A 138 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 321
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0036 Score=57.42 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH-------HHHHhhhcCCeeEEEEcCCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-------LVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~-------~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
.+.+.|+||||...... +.. ......+.+++|+|.....+... .+..+.+..+ .-+|+||+|...
T Consensus 72 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDR-----LRP-LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRS 143 (207)
T ss_dssp EEEEEEEECTTCTTCTT-----TGG-GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcHHHHH-----HHH-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhc
Confidence 46789999999643210 000 11123578899999865433222 2222222343 358899999643
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.52 E-value=0.0023 Score=60.94 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=33.1
Q ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeccCC
Q 011624 179 AKSRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVY 222 (481)
Q Consensus 179 ~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~-----~G~kVlLId~D~~ 222 (481)
.-.++.++.++|++|+||||++..|+..+.. ...+|.+++.|.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 3346789999999999999999999876632 1346888888854
No 323
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.51 E-value=0.0033 Score=59.65 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=37.1
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCc
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 223 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~r 223 (481)
..++.+|++.|..|+||||.+..|+.+|.. +|++|.++.-.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 346789999999999999999999999998 99998875555543
No 324
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.51 E-value=0.015 Score=57.74 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
+++-+++.|++|+|||+++..+|..+ .+..+..+++...... . .......++..+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~---------------~-----~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK---------------W-----LGESEKLVKNLFQLA 101 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS---------------S-----CCSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh---------------h-----hhHHHHHHHHHHHHH
Confidence 45788999999999999999998765 2556665555422100 0 011234455666666
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-...+
T Consensus 102 ~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSL 117 (322)
T ss_dssp HHTSSEEEEEETTTGG
T ss_pred HhcCCcEEEeecHHHh
Confidence 5556789999976443
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.50 E-value=0.0025 Score=56.98 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+++++|++|+||||++..|+..+ |. .++++|..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g~--~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---HA--AFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---TC--EEEEGGGGC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---Cc--EEEeCcccc
Confidence 46799999999999999999998765 43 567888765
No 326
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.50 E-value=0.0067 Score=54.99 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||+...|.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999999998875
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.50 E-value=0.0025 Score=58.71 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++.+|+++|++|+||||++..|+..+. .+.+++.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 4578999999999999999988874321 5888999975
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.49 E-value=0.0017 Score=58.90 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.++.+|+++|++||||||++..|+..+ .| ..++|+|
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 346789999999999999998887652 14 4556777
No 329
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.48 E-value=0.014 Score=52.87 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCcEEEEcCCCCccccHHH---HHHHHhhhhccCCceEEEEEeCcch--HHH---HHHHHHh---hhcCCeeEEEEcCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAM---MDELKDVKRVLNPTEVLLVVDAMTG--QEA---AALVTTF---NIEIGITGAILTKL 332 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~---~~el~~i~~~~~p~~vvLVvda~~~--~~~---~~~~~~f---~~~~~i~GvIlnKv 332 (481)
..+.+.|+||||........ ... .. ..+.+++|+|.+.. ... ...+... .... ..-+|.||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~----~~--~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~-piilv~nK~ 139 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMI----FR--GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM-NFEVFIHKV 139 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHH----HH--TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTC-EEEEEEECG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccc----cc--cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC-cEEEEEecc
Confidence 45789999999974321111 111 11 24788999998543 221 1222222 2222 345788999
Q ss_pred CCC
Q 011624 333 DGD 335 (481)
Q Consensus 333 D~~ 335 (481)
|..
T Consensus 140 Dl~ 142 (196)
T 3llu_A 140 DGL 142 (196)
T ss_dssp GGS
T ss_pred ccC
Confidence 954
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.47 E-value=0.0021 Score=59.07 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
++.+++++|++|+||||++..|+..+ |. .+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g~--~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---GL--EFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---CC--EEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---CC--eEEcccccc
Confidence 46799999999999999999998776 53 567888765
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0015 Score=59.40 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+++++|++|+||||++..|+..+...|+++..|..|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 478899999999999999999999998988887776654
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.46 E-value=0.0033 Score=62.62 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeccCCc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR 223 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G-~kVlLId~D~~r 223 (481)
.++.+++++|++|+||||++..|+..+... | .+|.+|..|.|-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 467899999999999999999998888643 5 579999988763
No 333
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0026 Score=58.35 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH-------HHHHhhhcCCeeEEEEcCCCCC
Q 011624 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-------LVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~-------~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
.+.+.|+||||...... +. . ......+.+++|+|.....+... .+..+.+..+ .-+|.||+|..
T Consensus 56 ~~~~~i~Dt~G~~~~~~-~~----~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 126 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSR-LR----P-LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 126 (212)
T ss_dssp EEEEEEECCCCCCCCCC-------C-GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEECCCcHHHHH-HH----H-hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence 46789999999743211 10 0 11223588899999865543322 2222222333 45889999964
No 334
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.44 E-value=0.021 Score=59.22 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA 204 (481)
.+.-++++|++||||||+...|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999998876
No 335
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.42 E-value=0.00028 Score=64.52 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+.-|+++|.+||||||++..|.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4567888999999999986663
No 336
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.0036 Score=55.58 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCeEEEEec
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 219 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~-------~G~kVlLId~ 219 (481)
+..++++|++|+||||++..++..+.. .+.++..+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 456789999999999999999998876 4677776655
No 337
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.40 E-value=0.0089 Score=59.57 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.+|+++||+||||||++..||..+ ...+|++|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 35789999999999999999998654 3578999963
No 338
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.40 E-value=0.011 Score=59.55 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=44.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.++-+++.|++|+||||++..+|..+ |..+..+++......+ .......++..+..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~--------------------~g~~~~~~~~~~~~a 172 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW--------------------VGEGEKMVRALFAVA 172 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS--------------------TTHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc--------------------cchHHHHHHHHHHHH
Confidence 46788999999999999999998654 6677766654221000 001223344455555
Q ss_pred HcCCCcEEEEcCC
Q 011624 262 KKKNVDVVIVDTA 274 (481)
Q Consensus 262 ~~~~~D~VIIDt~ 274 (481)
......+++||-.
T Consensus 173 ~~~~~~vl~iDEi 185 (357)
T 3d8b_A 173 RCQQPAVIFIDEI 185 (357)
T ss_dssp HHTCSEEEEEETH
T ss_pred HhcCCeEEEEeCc
Confidence 4456789999865
No 339
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.39 E-value=0.021 Score=57.76 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCEEEEE--EcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeccCC
Q 011624 182 RPTVILL--AGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i--~G~~GvGKTTta~~LA~~L~~~------G~kVlLId~D~~ 222 (481)
.+..+++ +|++|+||||++..++..+... +..+..+++...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 4567888 9999999999999999887653 677888887543
No 340
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.39 E-value=0.004 Score=66.17 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~-~-G~kVlLId~D~ 221 (481)
++.+|+++|.+||||||++..||..|.. + |+.+.++|+|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4689999999999999999999999986 6 47888999997
No 341
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.38 E-value=0.015 Score=60.58 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEE
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLV 217 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~-kVlLI 217 (481)
.+++.|++|+||||++..++.+|...|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 7889999999999999999999999887 66655
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.38 E-value=0.0027 Score=64.04 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+.+|+++|++||||||++..||..+. +.+|++|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36899999999999999999987653 788999976
No 343
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0036 Score=62.62 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=18.4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+.-|+++|.+||||||++..|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC
T ss_pred cceEEEECCCCccHHHHHHHHh
Confidence 4468889999999999987763
No 344
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.36 E-value=0.036 Score=51.88 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=45.7
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH------HHHHh-hhcCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA------LVTTF-NIEIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~------~~~~f-~~~~~i~GvIlnKvD~~~ 336 (481)
..+.+-|.||+|.-.. ..+... . ....+.+++|.|.+...+... .+... .+.+ +.-+|.||.|...
T Consensus 60 ~~v~l~iwDtaGqe~~-~~l~~~---~--~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~-piilVgNK~Dl~~ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERF-RSLIPS---Y--IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV-IIMLVGNKTDLAD 132 (216)
T ss_dssp CEEEEEEECCSCTTTC-GGGHHH---H--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECTTCGG
T ss_pred eEEEEEEEECCCchhh-hhHHHH---H--hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC-eEEEEeeccchHh
Confidence 3466789999996432 112211 1 123477888888765433322 22222 2222 3457889999643
Q ss_pred ----chhHHHHHHHHhCCCe
Q 011624 337 ----RGGAALSVKEVSGKPI 352 (481)
Q Consensus 337 ----~~g~~~~~~~~~glPV 352 (481)
....+..++...|.+.
T Consensus 133 ~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 133 KRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp GCCSCHHHHHHHHHHHTCEE
T ss_pred cCcccHHHHhhHHHHhCCee
Confidence 2344566777788765
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0025 Score=57.46 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
+|.+|+++|++||||||++..|+..+ |. .+++.|
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 46799999999999999999998765 44 346666
No 346
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.36 E-value=0.0025 Score=57.64 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
++.+++++|++|+||||++..|+.. .+.....++.|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccc
Confidence 4679999999999999999888754 233445677664
No 347
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.35 E-value=0.0065 Score=66.33 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCee
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~ 242 (481)
+.++.||+|+|||+|++.+..++.++|.+|++++ +...++|.+...-...+..++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a---~TN~AvD~i~erL~~~~~~il 261 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA---PSNIAVDNLVERLALCKQRIL 261 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE---SSHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc---CchHHHHHHHHHHHhcCCceE
Confidence 7788999999999999999999999999998663 344556655332223344443
No 348
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.35 E-value=0.0087 Score=53.93 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH---H---HHHhh----hcCCeeEEEEcCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---L---VTTFN----IEIGITGAILTKLD 333 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~---~---~~~f~----~~~~i~GvIlnKvD 333 (481)
..+.+.|+||||...... + . ... ...+.+++|.|.....+... . +..+. .... .-+|.||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~-~---~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 138 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-C-E---RYL--NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLD 138 (187)
T ss_dssp EEEEEEEEECCC---CCC-T-H---HHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGG
T ss_pred EEEEEEEEECCCCCcchh-H-H---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcc
Confidence 346788999999643221 1 1 111 13477899999865432221 1 22221 2233 458899999
Q ss_pred CCC----chhHHHHHHHHhCCCe
Q 011624 334 GDS----RGGAALSVKEVSGKPI 352 (481)
Q Consensus 334 ~~~----~~g~~~~~~~~~glPV 352 (481)
... ....+...+...+.++
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~ 161 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFGCLF 161 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEE
T ss_pred hhhcCccCHHHHHHHHHHcCCcE
Confidence 632 1234456667777765
No 349
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.34 E-value=0.015 Score=51.34 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|++.|.+||||||++..|.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999998775
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0023 Score=58.75 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.++.+|+++|++||||||++..|+..+ |.. +++.|.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 345689999999999999999999777 443 456664
No 351
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.30 E-value=0.016 Score=59.61 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=37.0
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc----hHHHHHHHHHhh-hcCCeeEEEEcCCCCCC
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFN-IEIGITGAILTKLDGDS 336 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~----~~~~~~~~~~f~-~~~~i~GvIlnKvD~~~ 336 (481)
+.+.|+||||.. .+...+. ......+.++||+|+.. .+.. +.+..+. ......-+++||+|...
T Consensus 81 ~~i~iiDtPGh~----~f~~~~~--~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPGHE----TLMATML--SGASLMDGAILVIAANEPCPQPQTK-EHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSSHH----HHHHHHH--TTCSCCSEEEEEEETTSCSSCHHHH-HHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCCHH----HHHHHHH--HhHhhCCEEEEEEECCCCCCCchhH-HHHHHHHHcCCCeEEEEEEccCCCC
Confidence 568999999953 2333332 22334688999999963 3322 2222221 12223458899999643
No 352
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.011 Score=60.43 Aligned_cols=117 Identities=16% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHH
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~ 259 (481)
+.+-.-|+++|.+.|||||+...|. |.++. +..=+| .+.....|+ +
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~-v~~~pf--------tT~~~~~g~--~----------------- 114 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLT------GTESE-AAEYEF--------TTLVTVPGV--I----------------- 114 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHH------SBCCC-GGGTCS--------SCCCEEEEE--E-----------------
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHh------CCCCc-ccCCCC--------ceeeeeeEE--E-----------------
Confidence 3444578899999999999998885 33322 111111 011101111 1
Q ss_pred HHHcCCCcEEEEcCCCCcccc---HHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHH----HHhhhcC--CeeEEEEc
Q 011624 260 EAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNIEI--GITGAILT 330 (481)
Q Consensus 260 ~~~~~~~D~VIIDt~G~~~~d---~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~----~~f~~~~--~i~GvIln 330 (481)
...+..+.++||||..... ..+..+.... +-.++-+++|+|+.........+ ..+...+ ...-+++|
T Consensus 115 --~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~--i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 115 --RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAV--ARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp --EETTEEEEEEECGGGCCC-----CHHHHHHHH--HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred --EeCCcEEEEEeCCCccCCchhhhHHHHHHHHH--HHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 1245678999999986431 1122222111 12358889999997653333322 2232211 23347889
Q ss_pred CCCC
Q 011624 331 KLDG 334 (481)
Q Consensus 331 KvD~ 334 (481)
|.|.
T Consensus 191 K~d~ 194 (376)
T 4a9a_A 191 KKEK 194 (376)
T ss_dssp ECSS
T ss_pred Hhhh
Confidence 9884
No 353
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.27 E-value=0.0043 Score=62.58 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCcc---ccHHHHHHH-HhhhhccCCceEEEEEeCcc-----hH-HH---HHHHHHhhhc--CCeeEEEEc
Q 011624 266 VDVVIVDTAGRLQ---IDKAMMDEL-KDVKRVLNPTEVLLVVDAMT-----GQ-EA---AALVTTFNIE--IGITGAILT 330 (481)
Q Consensus 266 ~D~VIIDt~G~~~---~d~~~~~el-~~i~~~~~p~~vvLVvda~~-----~~-~~---~~~~~~f~~~--~~i~GvIln 330 (481)
..++|+||||... ....+..+. ..+. ..+.+++|+|++. .. +. ...+..+.+. -...-+|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIE---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHH---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHH---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 5799999999532 111122221 1111 2477899999853 21 22 2223344321 123458999
Q ss_pred CCCCCCchhHHHHHHHHhC
Q 011624 331 KLDGDSRGGAALSVKEVSG 349 (481)
Q Consensus 331 KvD~~~~~g~~~~~~~~~g 349 (481)
|+|.......+..+....+
T Consensus 283 K~Dl~~~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 283 KMDMPEAAENLEAFKEKLT 301 (342)
T ss_dssp CTTSTTHHHHHHHHHHHCC
T ss_pred CccCCCCHHHHHHHHHHhh
Confidence 9997654333444555544
No 354
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.26 E-value=0.012 Score=60.47 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=36.7
Q ss_pred CcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcc----hHHH--HHHHHHhhhcCCeeEEEEcCCCCCC
Q 011624 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEA--AALVTTFNIEIGITGAILTKLDGDS 336 (481)
Q Consensus 266 ~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~----~~~~--~~~~~~f~~~~~i~GvIlnKvD~~~ 336 (481)
..+.|+||||.. .+...+..- ...++.++||+|+.. .+.. ...+..+ .....-+++||+|...
T Consensus 83 ~~i~iiDtPGh~----~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHE----ALMTTMLAG--ASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHH----HHHHHHHHC--GGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChH----HHHHHHHhh--hhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCC
Confidence 568999999963 233333222 224588999999963 2322 2222222 2223447799999754
No 355
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.25 E-value=0.011 Score=56.37 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=51.6
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe--ccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId--~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l 258 (481)
....+.+++|+-|+||||.+..++..+..+|++|+++. .|. |.+ ..+.. ..|+........ ... +.+
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg--~~i~s---r~G~~~~a~~i~-~~~----di~ 85 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS--SSFCT---HDRNTMEALPAC-LLR----DVA 85 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEES-SGG----GGH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch--HHHHh---hcCCeeEEEecC-CHH----HHH
Confidence 34679999999999999999999999999999999887 442 222 12211 123332211111 111 233
Q ss_pred HHHHcCCCcEEEEcCCCCcc
Q 011624 259 EEAKKKNVDVVIVDTAGRLQ 278 (481)
Q Consensus 259 ~~~~~~~~D~VIIDt~G~~~ 278 (481)
+.+ .++|+|+||=+-...
T Consensus 86 ~~~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 86 QEA--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp HHH--TTCSEEEESSGGGCT
T ss_pred HHh--ccCCEEEEEchhhhh
Confidence 333 679999999986653
No 356
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.24 E-value=0.0038 Score=61.93 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEecc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 220 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~-~~G~kVlLId~D 220 (481)
+.-+++.|++|+|||+++..++..+. ++|.+|.++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 45788899999999999999999999 999999988764
No 357
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0026 Score=56.24 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+|+++|++||||||++..|+..+ |. .+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eeecCcccc
Confidence 378899999999999999998765 43 457888764
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.23 E-value=0.0035 Score=56.38 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.+.+|+++|++||||||++..|+..+ |. .++++|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---GW--VHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---CC--eEeeHH
Confidence 46799999999999999999998765 43 456665
No 359
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.23 E-value=0.0034 Score=55.23 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
.+|+++|++||||||++..| .+.|..+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 37889999999999999887 45577654
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.23 E-value=0.0028 Score=57.42 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
++.+|+++|++||||||++..|+..| |.. +++.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l---~~~--~i~~d~ 42 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY---GYT--HLSTGD 42 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCe--EEcHHH
Confidence 45689999999999999999998766 443 566653
No 361
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.017 Score=52.42 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCe
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKS 213 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~k 213 (481)
++++|++|+||||++..++..+...+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 8899999999999999999888665543
No 362
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.22 E-value=0.012 Score=58.20 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=46.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.++-+++.|++|+|||+++..+|..+ +..+..+++... ..... ......++..+..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----------~~~~~----------g~~~~~~~~~f~~a 106 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----------VSKWM----------GESEKLVKQLFAMA 106 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----------HTTTG----------GGHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----------hhccc----------chHHHHHHHHHHHH
Confidence 45678999999999999999998764 556665544211 00000 11234455566666
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-...+
T Consensus 107 ~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 107 RENKPSIIFIDQVDAL 122 (322)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HhcCCeEEEechhhhh
Confidence 5556679999876544
No 363
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.21 E-value=0.0053 Score=56.86 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHH-------HHHHhhhcCCeeEEEEcCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-------LVTTFNIEIGITGAILTKLDGD 335 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~-------~~~~f~~~~~i~GvIlnKvD~~ 335 (481)
..+.+.|+||+|..... .+.. ......+.+++|+|.+...+... .+....... ..-+|.||+|..
T Consensus 73 ~~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYD-----NVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGT-----TTGG-GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTS-EEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHH-----HHHH-HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEChhhc
Confidence 45678999999964211 0100 01123578899999865543322 222222223 345789999964
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.18 E-value=0.0074 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKL 203 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~L 203 (481)
++.+++++|++|+||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999864
No 365
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.17 E-value=0.0075 Score=56.64 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~-kVlLId~D~~ 222 (481)
+.+|++.|+.|+||||.+..|+.+|..+|+ .|. +.-.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~ 42 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPG 42 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCC
Confidence 568999999999999999999999999998 664 444443
No 366
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.17 E-value=0.015 Score=56.47 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+.-+++.|++|+||||++..+|..+ +.....+++...... .........+..+..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--------------------YVGDGEKLVRALFAVA 109 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS--------------------SCSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc--------------------ccchHHHHHHHHHHHH
Confidence 45688999999999999999988654 455555554322100 0112234445555555
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-+..+
T Consensus 110 ~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSL 125 (297)
T ss_dssp HHTCSEEEEEETGGGT
T ss_pred HHcCCcEEEeccHHHh
Confidence 4456789999977443
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.0031 Score=56.78 Aligned_cols=35 Identities=40% Similarity=0.525 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+.+|+++|++||||||++..||..| |. .++|.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChHH
Confidence 4578899999999999999998766 43 45677754
No 368
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.16 E-value=0.0025 Score=68.23 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=19.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLAN 205 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~ 205 (481)
++.+|++.|.+|+||||+...|..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~ 26 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRK 26 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345788899999999999988853
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.15 E-value=0.0037 Score=57.28 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
..|.+|+++|++||||||++..|+..+ |.. +++.|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 457799999999999999999998776 444 45654
No 370
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.031 Score=53.07 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
|+-+++.|++|+||||++..++..+ +..+..+++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~ 79 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS 79 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence 4458899999999999999998765 4455555544
No 371
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.11 E-value=0.0042 Score=59.00 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCML 216 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~----G~kVlL 216 (481)
++.+|++.|+.|+||||.+..|+.+|... |++|.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~ 62 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV 62 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee
Confidence 46789999999999999999999999988 999864
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.11 E-value=0.0036 Score=56.36 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++.+|+++|++||||||++..|+..+ |. .++++|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 35689999999999999999998766 44 445665
No 373
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.11 E-value=0.0043 Score=55.07 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCeEEEEec
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 219 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~-------~G~kVlLId~ 219 (481)
+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 346789999999999999999998876 3666766554
No 374
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.11 E-value=0.002 Score=57.84 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVl 215 (481)
+|.+|+++|.+||||||++..|+..| |..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 46799999999999999998887654 55544
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.08 E-value=0.0038 Score=57.12 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 180 ~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
..++.+|+++|++||||||++..|+..+ |. .++++|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3467899999999999999999998654 44 556666
No 376
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.07 E-value=0.0027 Score=58.95 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+++++|++|+||||++..|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46799999999999999999887654
No 377
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.06 E-value=0.0027 Score=65.99 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred cEEEEcCCCCccccH---HHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHhhhcCCeeEEEEcCCCCCCchh--HH
Q 011624 267 DVVIVDTAGRLQIDK---AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--AA 341 (481)
Q Consensus 267 D~VIIDt~G~~~~d~---~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f~~~~~i~GvIlnKvD~~~~~g--~~ 341 (481)
.+.|+||||...... .......... ...+.+++|+|+............+...-...-+|+||+|...... ..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~ 161 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELK 161 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHH
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHH
Confidence 689999999753211 0111111111 2358889999983333222333333221123458899999654322 22
Q ss_pred HHHHHHhCCCeEEe
Q 011624 342 LSVKEVSGKPIKLV 355 (481)
Q Consensus 342 ~~~~~~~glPV~~i 355 (481)
..+....+.|+..+
T Consensus 162 ~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 162 GLYESRYEAKVLLV 175 (423)
T ss_dssp HHSSCCTTCCCCCC
T ss_pred HHHHHHcCCCEEEE
Confidence 33334456776433
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.04 E-value=0.0043 Score=62.45 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
++.+|+++|++||||||++..||..+ ..-+|++|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 45799999999999999999998543 4678999965
No 379
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.03 E-value=0.0098 Score=58.73 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|++.|.+||||||+...|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~ 24 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF 24 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999987764
No 380
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.00 E-value=0.012 Score=61.78 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHH---HHHHHhhh----cCCeeEEEEcCCCCCC
Q 011624 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI----EIGITGAILTKLDGDS 336 (481)
Q Consensus 264 ~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~---~~~~~f~~----~~~i~GvIlnKvD~~~ 336 (481)
+++.+.|+||||....... . ....-..+.+++|+|++...+.. .....+.. .-...-+|+||+|...
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~----~--~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPL----W--RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp SSCEEEEEEECCCGGGSGG----G--GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred CCEEEEEEECCCcHHHHHH----H--HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 4678999999996432111 0 11122458889999986553322 22222211 1123568899999754
Q ss_pred chhHHHHHHHHhCCC
Q 011624 337 RGGAALSVKEVSGKP 351 (481)
Q Consensus 337 ~~g~~~~~~~~~glP 351 (481)
... ...+....+.+
T Consensus 438 ~~~-~~~~~~~~~~~ 451 (497)
T 3lvq_E 438 AMK-PHEIQEKLGLT 451 (497)
T ss_dssp CCC-HHHHHHHTTCT
T ss_pred CCC-HHHHHHHhchh
Confidence 321 23344444443
No 381
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.013 Score=58.27 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
.|. ++++|++|+||||++..|+..+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 355 88999999999999999998664
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.98 E-value=0.004 Score=56.52 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+.+|+++|++||||||++..|+..| | ..+++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 5689999999999999999998776 3 34567664
No 383
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.98 E-value=0.026 Score=51.60 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ 210 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~ 210 (481)
+..++++|++|+||||++..++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4588999999999999999998877643
No 384
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.022 Score=59.12 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=45.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=+++.||+|+|||+++.++|..+ |..+..+++...-.. ........+++.+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~--------------------~~Ge~e~~ir~lF~~ 260 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK--------------------YLGEGPRMVRDVFRL 260 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS--------------------SCSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc--------------------ccchhHHHHHHHHHH
Confidence 357789999999999999999998765 556665544321100 011223455667777
Q ss_pred HHcCCCcEEEEcCC
Q 011624 261 AKKKNVDVVIVDTA 274 (481)
Q Consensus 261 ~~~~~~D~VIIDt~ 274 (481)
++....-+++||-.
T Consensus 261 A~~~aP~IifiDEi 274 (428)
T 4b4t_K 261 ARENAPSIIFIDEV 274 (428)
T ss_dssp HHHTCSEEEEEECT
T ss_pred HHHcCCCeeechhh
Confidence 65445557777653
No 385
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0053 Score=55.85 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++.+|+++|++||||||++..|+.. |. .++|+|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccHH
Confidence 35789999999999999999888753 54 46788854
No 386
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0036 Score=56.63 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+++++|++||||||++..|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998654
No 387
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.97 E-value=0.0029 Score=58.36 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++++|+++|++||||||++..|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998766
No 388
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.0049 Score=59.22 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+++++|++||||||++..||..+ | ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 478999999999999999998765 3 346788864
No 389
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.023 Score=59.13 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=45.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=+++.||+|+|||+++.++|..+ |.....+++...-.. ........++..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk--------------------~~Gese~~ir~~F~~ 269 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK--------------------YIGESARIIREMFAY 269 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS--------------------SSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc--------------------cchHHHHHHHHHHHH
Confidence 357889999999999999999998765 566665554322110 011223445666777
Q ss_pred HHcCCCcEEEEcCC
Q 011624 261 AKKKNVDVVIVDTA 274 (481)
Q Consensus 261 ~~~~~~D~VIIDt~ 274 (481)
++....-+|+||-.
T Consensus 270 A~~~~P~IifiDEi 283 (437)
T 4b4t_L 270 AKEHEPCIIFMDEV 283 (437)
T ss_dssp HHHSCSEEEEEECC
T ss_pred HHhcCCceeeeecc
Confidence 66556667787654
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.94 E-value=0.0047 Score=57.48 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++..|++.|++||||||++..||..| |. .+++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 46789999999999999999998876 43 446664
No 391
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=95.94 E-value=0.0088 Score=62.48 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=31.9
Q ss_pred CCEEEEEEcC-C---CCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 182 RPTVILLAGL-Q---GVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 182 ~~~VI~i~G~-~---GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
..++|++++. + |.||||++.+||..|++.|+||+++
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 4578877644 7 9999999999999999999999998
No 392
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.94 E-value=0.01 Score=57.49 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D 220 (481)
+..+++++|++|+||||+...|+..+... .-+|.+..-+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 45799999999999999999999888754 5566655433
No 393
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.91 E-value=0.0027 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
|++++++|++|+||||++..|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35889999999999999999987665
No 394
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0034 Score=61.30 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
|.+|+++|++||||||++..|+..+ ....+++.|.+|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence 5789999999999999999888632 235677877654
No 395
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.90 E-value=0.012 Score=63.73 Aligned_cols=73 Identities=23% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCccc-----cHHHHHHHHhhhhc-c-CC-ceEEEEEeCc---chHHHHHHHHHhhhcCCeeEEEEcCCC
Q 011624 265 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRV-L-NP-TEVLLVVDAM---TGQEAAALVTTFNIEIGITGAILTKLD 333 (481)
Q Consensus 265 ~~D~VIIDt~G~~~~-----d~~~~~el~~i~~~-~-~p-~~vvLVvda~---~~~~~~~~~~~f~~~~~i~GvIlnKvD 333 (481)
..+++|+|.||.... |.....++..+... + .+ .-+++|+++. ..+.+...++.+++...-+-+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 367999999975431 22223333333332 1 22 3345555552 224566777777655445668899999
Q ss_pred CCCc
Q 011624 334 GDSR 337 (481)
Q Consensus 334 ~~~~ 337 (481)
.-..
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 5433
No 396
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.88 E-value=0.0087 Score=55.33 Aligned_cols=33 Identities=42% Similarity=0.691 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
.|++-|.-||||||.+..|+.+|.++|++|.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 477889999999999999999999999999754
No 397
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.021 Score=59.45 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=+++.||+|+|||+++.++|..+ |.....+++...-.. ........++..+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~--------------------~vGese~~ir~lF~~ 269 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM--------------------YIGEGAKLVRDAFAL 269 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS--------------------CSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc--------------------ccchHHHHHHHHHHH
Confidence 357889999999999999999988655 556665554321100 011233455666666
Q ss_pred HHcCCCcEEEEcCC
Q 011624 261 AKKKNVDVVIVDTA 274 (481)
Q Consensus 261 ~~~~~~D~VIIDt~ 274 (481)
++....-+|+||-.
T Consensus 270 A~~~aP~IifiDEi 283 (434)
T 4b4t_M 270 AKEKAPTIIFIDEL 283 (434)
T ss_dssp HHHHCSEEEEEECT
T ss_pred HHhcCCeEEeecch
Confidence 65455567888753
No 398
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.88 E-value=0.0099 Score=59.11 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.|.+++++||+||||||++..||..+ ..-+|.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 46899999999999999999998664 356889885
No 399
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.87 E-value=0.0041 Score=58.00 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
+|.+|++.|++||||||++..||..|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987763
No 400
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.86 E-value=0.0048 Score=55.40 Aligned_cols=34 Identities=38% Similarity=0.439 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++.+|+++|++|+||||++..|+..+ |. .+++.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 45678899999999999999998766 43 345555
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.84 E-value=0.0064 Score=57.91 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
+|.+|+++|++||||||++..|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998766
No 402
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.84 E-value=0.027 Score=57.87 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 011624 186 ILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA 204 (481)
|+++|.+||||||+...|.
T Consensus 3 I~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999998875
No 403
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.84 E-value=0.0038 Score=55.45 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+.+|+++|++|+||||++..|+..+ |. .++|+|.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l---~~--~~id~d~ 37 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL---NM--EFYDSDQ 37 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CC--CEEeccH
Confidence 4579999999999999998888654 32 4567764
No 404
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.83 E-value=0.063 Score=52.72 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
.|.++++.|++|+||||++..++..+ |..+..+++...+.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~ 86 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKI 86 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCH
Confidence 45688999999999999999998665 67787777765553
No 405
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.82 E-value=0.0059 Score=61.09 Aligned_cols=35 Identities=37% Similarity=0.599 Sum_probs=29.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+.+|+++|++||||||++..||..+ ...+|++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 5689999999999999999998654 3678888864
No 406
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.005 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+++++|++|+||||++..|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35699999999999999999888654
No 407
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.0016 Score=59.57 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
..-|+++|.+||||||+...|.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 4567888999999999997764
No 408
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=95.76 E-value=0.057 Score=51.74 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=36.1
Q ss_pred CEEEEEE-cC-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~-G~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+.|+++ |. +|.||-.+++.|+..|+.+|++|..+-.|||=
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBC
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCce
Confidence 3566666 55 99999999999999999999999999999984
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.74 E-value=0.005 Score=56.53 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.+|+++|++||||||++..|+. .|.. ++|+|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 5889999999999999988874 3654 467774
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.73 E-value=0.0064 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
+|.++++.|++|+||||++..|+..|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998776
No 411
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.73 E-value=0.019 Score=55.67 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+.-+++.|++|+|||+++..++..+ +.++..+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 35568899999999999999999877 567777777654
No 412
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.72 E-value=0.019 Score=57.80 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.++-+++.|++|+|||+++..+|..+ +..+..+++.. + .... . ......++..+..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~--------l--~~~~-----~-----g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD--------L--VSKW-----M-----GESEKLVKQLFAMA 139 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHH--------H--HSCC-------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHH--------H--hhhh-----c-----chHHHHHHHHHHHH
Confidence 34568889999999999999998876 55665554321 1 1100 0 01233445555555
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-...+
T Consensus 140 ~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 140 RENKPSIIFIDQVDAL 155 (355)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HHcCCeEEEEechHhh
Confidence 5456789999876544
No 413
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.71 E-value=0.015 Score=59.01 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 011624 184 TVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA 204 (481)
.-|+++|.+|+||||+...|.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHh
Confidence 346889999999999998874
No 414
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.71 E-value=0.0049 Score=55.45 Aligned_cols=34 Identities=41% Similarity=0.623 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+|+++|++||||||++..|+..| |.. ++|.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCchH
Confidence 368899999999999999998766 443 5677754
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.70 E-value=0.0071 Score=55.78 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
...+|.++|..||||||++..|+..+ | +.++|+|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 35789999999999999998887654 5 456788865
No 416
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.69 E-value=0.072 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK 209 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~ 209 (481)
.|..+++.|++|+||||++..+|..+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3568999999999999999999988864
No 417
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.029 Score=54.31 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=44.7
Q ss_pred HHHHHHhcCccccccccCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 163 ~~L~~~l~~~~~~~~~~~~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..|.++++++.. +.++++++|.+|+||||++...+..-.++|.+++++..+--
T Consensus 8 ~~LD~~l~GGl~-------~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 8 EELDREIGKIKK-------HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp HHHHHHHCCBCT-------TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred HHHHHHhCCCCC-------CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 357778887654 56899999999999999999999888889999999999854
No 418
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.68 E-value=0.031 Score=59.38 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHH-HHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA-~~L~~~G~kVlLId~D~ 221 (481)
++.++++.|++|+||||++..++ ..+...+...++++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 45699999999999999999963 34444355567777654
No 419
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=95.67 E-value=0.11 Score=50.03 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=36.8
Q ss_pred CCEEEEEEc-C-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 182 RPTVILLAG-L-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 182 ~~~VI~i~G-~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
..+.|+++| . +|.||-.+++.|+..|+.+|++|.++-.|||=
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccce
Confidence 345666664 4 99999999999999999999999999999984
No 420
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.67 E-value=0.0048 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+++++|++||||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999888665
No 421
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.66 E-value=0.043 Score=58.60 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH--HcC--CeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK--KQG--KSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~--~~G--~kVlLId~D~~ 222 (481)
.+++++++|++|+||||++..++.... ... ..|..++.+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 468999999999999999999875432 222 34777776654
No 422
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.66 E-value=0.018 Score=55.33 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
.+.-+++.|++|+|||+++..+|..+ |..+..++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 45788899999999999999998763 55555443
No 423
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.64 E-value=0.0052 Score=57.57 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++.+|++.|++||||||++..|+..| |. .+++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 46789999999999999999998755 44 345654
No 424
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.62 E-value=0.022 Score=52.77 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
..++.++.|+-|+||||-....+..+..+|++|+++...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 457999999999999999999888888889999998743
No 425
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.62 E-value=0.014 Score=59.44 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEec
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 219 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~ 219 (481)
++.+++++|++|+||||+...|+..+... ..+|.+++-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 45799999999999999999999988765 567766653
No 426
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.056 Score=56.03 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=44.3
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=+++.||+|+|||+++.++|..+ |.....+++..+- . .........++..+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~-------------------s-k~vGesek~ir~lF~~ 270 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI-------------------Q-KYLGDGPRLCRQIFKV 270 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC-------------------C-SSSSHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh-------------------h-ccCchHHHHHHHHHHH
Confidence 356789999999999999999998665 4555555443110 0 0011234456677777
Q ss_pred HHcCCCcEEEEcC
Q 011624 261 AKKKNVDVVIVDT 273 (481)
Q Consensus 261 ~~~~~~D~VIIDt 273 (481)
++....-+|+||-
T Consensus 271 Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 271 AGENAPSIVFIDE 283 (437)
T ss_dssp HHHTCSEEEEEEE
T ss_pred HHhcCCcEEEEeh
Confidence 7645555777753
No 427
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.03 Score=57.61 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=44.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.|+=+++.||+|+|||+++.++|..+ |.....+++...-.. ........+++.+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk--------------------~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK--------------------YIGEGSRMVRELFVMA 237 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS--------------------STTHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc--------------------ccchHHHHHHHHHHHH
Confidence 46778999999999999999998655 555554444311100 0112344567777777
Q ss_pred HcCCCcEEEEcCC
Q 011624 262 KKKNVDVVIVDTA 274 (481)
Q Consensus 262 ~~~~~D~VIIDt~ 274 (481)
+....-+|+||-.
T Consensus 238 r~~aP~IIFiDEi 250 (405)
T 4b4t_J 238 REHAPSIIFMDEI 250 (405)
T ss_dssp HHTCSEEEEEESS
T ss_pred HHhCCceEeeecc
Confidence 6555667787653
No 428
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.55 E-value=0.0087 Score=55.57 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+.+|+++|++||||||++..|+..+ |. ..+|+|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~---g~--~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL---QW--HLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CC--CcccCcc
Confidence 4589999999999999998888655 33 4456553
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.54 E-value=0.007 Score=53.62 Aligned_cols=34 Identities=38% Similarity=0.618 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.+|+++|++||||||++..|+..| |. .++++|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEcccHH
Confidence 478899999999999999998766 44 35677743
No 430
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0064 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
+++++++|++|+||||++..|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46889999999999999999987653
No 431
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.54 E-value=0.0084 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
+|++.|++||||||++..|+..|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999998773
No 432
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.026 Score=54.90 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ 210 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~ 210 (481)
|. +++.|++|+||||++..++..+...
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 44 8899999999999999999887643
No 433
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.49 E-value=0.011 Score=62.39 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
+..|+++|.+||||||+...|.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~ 264 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLL 264 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHH
Confidence 3568899999999999998886
No 434
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.48 E-value=0.0088 Score=52.99 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=26.6
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
..+|+++|.+||||||++..||..| |.. ++|+|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 3589999999999999999988766 554 456664
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.47 E-value=0.0097 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
+..|++.|++||||||++..|+..| |.. +++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 4578889999999999999999877 543 45554
No 436
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.47 E-value=0.013 Score=51.06 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
-+++.|++|+|||+++..++....+.+..+. ++|..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 3688999999999999998876666566666 66654
No 437
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.46 E-value=0.0086 Score=55.64 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH-----HcC-CeEEEEeccCC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLK-----KQG-KSCMLVAGDVY 222 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~-----~~G-~kVlLId~D~~ 222 (481)
+.+++++|++|+|||+.+..++..+. ++| ++|.+..+|-.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 45889999999999999988766554 668 77776766644
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.46 E-value=0.014 Score=54.04 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+|.+|+++|++||||||++..|+. .|. .++|+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 467999999999999999988875 355 4567774
No 439
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.46 E-value=0.0099 Score=62.31 Aligned_cols=42 Identities=36% Similarity=0.495 Sum_probs=34.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++.+|+++|.+|+||||++..|+..+...+..+..++.|.+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 357789999999999999999999998877777766665543
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.45 E-value=0.0065 Score=55.61 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+|+++|++||||||++..|+. + | +.++++|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 788999999999999988876 3 5 45567764
No 441
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.033 Score=58.21 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=45.6
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=+++.||+|+|||+++.++|..+ |.....+++..+-. .........++..+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s--------------------k~vGesek~ir~lF~~ 297 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ--------------------KYVGEGARMVRELFEM 297 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC--------------------CSSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc--------------------ccCCHHHHHHHHHHHH
Confidence 357789999999999999999998655 45555444432110 0011234456677777
Q ss_pred HHcCCCcEEEEcCC
Q 011624 261 AKKKNVDVVIVDTA 274 (481)
Q Consensus 261 ~~~~~~D~VIIDt~ 274 (481)
++....-+++||-.
T Consensus 298 Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 298 ARTKKACIIFFDEI 311 (467)
T ss_dssp HHHTCSEEEEEECC
T ss_pred HHhcCCceEeeccc
Confidence 76555667888654
No 442
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.43 E-value=0.0083 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++++++++|++|+||||++..|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46799999999999999999988654
No 443
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.39 E-value=0.028 Score=55.69 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=23.8
Q ss_pred ccCCCCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 178 ~~~~~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
+.-.+..+++++|++|+||||+...|+..+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 333456799999999999999998887544
No 444
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.36 E-value=0.0088 Score=53.44 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+|+++|++|+||||++..||..| | ..++|.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccHH
Confidence 58889999999999999998766 3 356677743
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.34 E-value=0.0083 Score=54.74 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+|+++|++|+||||++..|+..| | +.++|.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceeccchH
Confidence 89999999999999999998766 3 456677754
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.32 E-value=0.011 Score=52.01 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
+|+++|.+||||||++..|+..| |.. ++++|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECcHH
Confidence 58899999999999999998766 443 4576643
No 447
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.31 E-value=0.037 Score=56.22 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.++-+++.|++|+|||+++..+|.. .|..+..+++......+.. .....+...+..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~~g--------------------~~~~~~~~~~~~a 203 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKYVG--------------------EGEKLVRALFAVA 203 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhccccc--------------------hHHHHHHHHHHHH
Confidence 3567899999999999999888754 4677777777544221100 0122334455555
Q ss_pred HcCCCcEEEEcCCCCc
Q 011624 262 KKKNVDVVIVDTAGRL 277 (481)
Q Consensus 262 ~~~~~D~VIIDt~G~~ 277 (481)
......+++||-...+
T Consensus 204 ~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHSSSEEEEEETGGGG
T ss_pred HhcCCeEEEEECchhh
Confidence 4455679999876443
No 448
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.043 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQG 211 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G 211 (481)
+++.|++|+||||++..+|..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 88999999999999999998876443
No 449
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.30 E-value=0.071 Score=61.51 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHH----cCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~----~G~kVlLId~D~ 221 (481)
.++++.++|++|+||||++..++..... ....|..++...
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 5689999999999999999988865432 224576777654
No 450
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.26 E-value=0.021 Score=56.06 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId 218 (481)
.++.+++.|++|+||||++..+|..+ +.....++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 46688999999999999999998755 45555444
No 451
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.25 E-value=0.017 Score=59.53 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+.+|+++|++||||||++..||..+. ..+|.+|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 46899999999999999999998773 35789885
No 452
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.25 E-value=0.22 Score=55.12 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
..+++.|++|+|||+++..||..+ |..+..+++..+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~ 524 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY 524 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhh
Confidence 478899999999999999999887 677777777654
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.24 E-value=0.013 Score=55.22 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
++..|++.|++|+||||++..|+..| |. .++++|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---CV--CHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--ceecHH
Confidence 45689999999999999999999876 33 455654
No 454
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.21 E-value=0.03 Score=56.23 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
.+.-+++.|++|+|||+++..||..+ |.....+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 34578899999999999999998776 555555554
No 455
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.20 E-value=0.063 Score=57.19 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLAN 205 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~ 205 (481)
..+++.++|.+|+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999988874
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.20 E-value=0.011 Score=63.57 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=35.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccCC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 222 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~-G~kVlLId~D~~ 222 (481)
++.+++++|++|+||||++..|+..+... |.++.++|.|..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 56899999999999999999999988755 467888998854
No 457
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.19 E-value=0.035 Score=60.33 Aligned_cols=53 Identities=30% Similarity=0.383 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCC
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 240 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~ 240 (481)
+.++.|++|+||||++..++..+.+ .+.+|++++ .+ ..+.+++...-...|++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a-~t--n~A~~~l~~~l~~~~~~ 250 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA-PS--NIAVDQLTEKIHQTGLK 250 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE-SS--HHHHHHHHHHHHTTTCC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe-Cc--HHHHHHHHHHHHhcCCe
Confidence 6788999999999999999998887 677877553 33 34555554332233443
No 458
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.19 E-value=0.01 Score=53.65 Aligned_cols=34 Identities=32% Similarity=0.624 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.+++++|++|+||||++..|+. ..+.. ..++.|.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSE-EEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCe-EEEcccc
Confidence 5889999999999999999975 22223 3456554
No 459
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.19 E-value=0.05 Score=57.21 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~~ 262 (481)
|+-+++.|++|+||||++..+|..+ |..+..+++..+-.. + ........+..+..+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----------------~----~g~~~~~~r~lf~~A~ 105 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----------------F----VGVGAARVRDLFAQAK 105 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----------------C----TTHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----------------H----hcccHHHHHHHHHHHH
Confidence 4458899999999999999998654 555555544322100 0 0012334556677666
Q ss_pred cCCCcEEEEcCCCC
Q 011624 263 KKNVDVVIVDTAGR 276 (481)
Q Consensus 263 ~~~~D~VIIDt~G~ 276 (481)
.....+++||-+..
T Consensus 106 ~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 106 AHAPCIVFIDEIDA 119 (476)
T ss_dssp HTCSEEEEEETGGG
T ss_pred hcCCCEEEEechhh
Confidence 56678999997743
No 460
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.18 E-value=0.012 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L 207 (481)
.|+++|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
No 461
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.14 E-value=0.0088 Score=55.98 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
.++.+++++|++|+||||++..|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356799999999999999999998755
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.11 E-value=0.018 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L 207 (481)
.|++.|++||||||++..|+..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998877
No 463
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.11 E-value=0.02 Score=53.25 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLI 217 (481)
+.|++-|.-||||||.+..|+.+|. +|++|.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 5788999999999999999999996 58888743
No 464
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.07 E-value=0.14 Score=47.78 Aligned_cols=33 Identities=45% Similarity=0.498 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
..-|.++|.-|+||||++..|+ +.|.. ++|+|.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~----~~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFA----ARGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH----HTTCE--EEEHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH----HCCCc--EEECcH
Confidence 4678999999999999996664 45665 568885
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.06 E-value=0.021 Score=53.17 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
.++.++++|++|+||||++..|+ ++|. -+|..|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 35789999999999999997765 5566 6677774
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.02 E-value=0.015 Score=55.50 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccC
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~ 221 (481)
+|.+|++.|++|+||||++..|+..| |. .+++.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l---g~--~~~d~g~ 42 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL---GA--RYLDTGA 42 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--CcccCCc
Confidence 46789999999999999999998776 33 4456553
No 467
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.98 E-value=0.0074 Score=56.66 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=17.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHH-HHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLA-NYL 207 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA-~~L 207 (481)
.++.+++++|++|+||||++..|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 346799999999999999999887 654
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.95 E-value=0.019 Score=53.08 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
.|++.|++||||||++..|+..+ |..+ +++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQ--IST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCE--EEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeE--EeH
Confidence 47889999999999999998776 5544 454
No 469
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.94 E-value=0.16 Score=47.19 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHH-HHH------HcCCeEEEEeccCCchh
Q 011624 185 VILLAGLQGVGKTTVSAKLAN-YLK------KQGKSCMLVAGDVYRPA 225 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~-~L~------~~G~kVlLId~D~~rp~ 225 (481)
-+++.+++|+|||+.....+. .+. ..|.+++++. |.|.-
T Consensus 64 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~--Pt~~L 109 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS--PTREL 109 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC--SSHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe--CCHHH
Confidence 367789999999997665443 232 2366776665 44433
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.90 E-value=0.11 Score=58.07 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=45.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~ 260 (481)
..|+=|++.|++|+|||+++..+|..+ |..+..|++.- + ... ........++..++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~--------l--~sk----------~~gese~~lr~lF~~ 292 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE--------I--MSK----------LAGESESNLRKAFEE 292 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHH--------H--HSS----------CTTHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHH--------h--hcc----------cchHHHHHHHHHHHH
Confidence 467889999999999999998887543 66666555421 1 110 011234456777777
Q ss_pred HHcCCCcEEEEcCC
Q 011624 261 AKKKNVDVVIVDTA 274 (481)
Q Consensus 261 ~~~~~~D~VIIDt~ 274 (481)
++....-+++||-.
T Consensus 293 A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 293 AEKNAPAIIFIDEL 306 (806)
T ss_dssp HTTSCSEEEEEESG
T ss_pred HHHcCCeEEEEehh
Confidence 76555567787653
No 471
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.89 E-value=0.018 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
.++.++++.|++|+||||++..|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356799999999999999999999877
No 472
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.14 Score=54.18 Aligned_cols=41 Identities=32% Similarity=0.457 Sum_probs=36.4
Q ss_pred CEEEEEEc-C-CCCCHHHHHHHHHHHHHHcCCeEEEEeccCCc
Q 011624 183 PTVILLAG-L-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (481)
Q Consensus 183 ~~VI~i~G-~-~GvGKTTta~~LA~~L~~~G~kVlLId~D~~r 223 (481)
.+.|+++| . +|.||-.+++.|+..|+.+|++|.++-.|||=
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcce
Confidence 35677765 4 99999999999999999999999999999984
No 473
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.015 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+++++|++|+||||++..|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45699999999999999999988655
No 474
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.86 E-value=0.014 Score=53.95 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.|+++|++||||||++..|+..+ |. .++++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 47789999999999999887654 44 345553
No 475
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.82 E-value=0.048 Score=61.05 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccCCchhHHHHHHHhhhhcCCCe
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~-~G~kVlLId~D~~rp~aidql~~~~~~~gv~v 241 (481)
+.++.|++|+||||++..++..|.+ .+.+|+++ +.+ ..+.+.+...-...|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~-a~t--n~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC-APS--NIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE-ESS--HHHHHHHHHHHHTTTCCE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE-cCc--HHHHHHHHHHHHHhCcce
Confidence 6788999999999999999998887 57787755 333 345555543333344443
No 476
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.81 E-value=0.025 Score=58.55 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
+..+++++|++|+||||+...|+..+.....+|.++.-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 34699999999999999999998877655556765543
No 477
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.81 E-value=0.016 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
++.+|+++|++||||||++..||..|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999998888655
No 478
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.81 E-value=0.019 Score=52.10 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
.++++|++|+||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999987773
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.79 E-value=0.028 Score=58.42 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.++-+++.|++|+|||+++..+|..+ .+..+..+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 45788999999999999999998765 35566656554
No 480
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.78 E-value=0.16 Score=46.66 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=21.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVA 218 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~---G~kVlLId 218 (481)
+++.+++|+|||.+....+...... +.+++++.
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 6778999999998776655444222 33666554
No 481
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.77 E-value=0.053 Score=57.21 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=44.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhHHHHHHHhhhhcCCCeecCCCCCCHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~aidql~~~~~~~gv~v~~~~~~~~~~~~l~~~l~~~ 261 (481)
.+.-+++.|++|+|||+++..++..+ +..+..++|..+. .. ........++..+..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~----------~~----------~~g~~~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----------SK----------LAGESESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHH----------TS----------CTTHHHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhh----------hh----------hcchhHHHHHHHHHHH
Confidence 45678899999999999998887654 6677666653110 00 0011223345566666
Q ss_pred HcCCCcEEEEcCC
Q 011624 262 KKKNVDVVIVDTA 274 (481)
Q Consensus 262 ~~~~~D~VIIDt~ 274 (481)
......+++||-.
T Consensus 294 ~~~~p~iLfLDEI 306 (489)
T 3hu3_A 294 EKNAPAIIFIDEL 306 (489)
T ss_dssp HHTCSEEEEEESH
T ss_pred HhcCCcEEEecch
Confidence 5455678999875
No 482
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.77 E-value=0.023 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCchhH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp~a 226 (481)
-+++.|++|+|||+++..++..+...+..+..++|..+....
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 577899999999999999988776667788888888775443
No 483
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.77 E-value=0.014 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANY 206 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~ 206 (481)
.|+++||+||||||++.+|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999887544
No 484
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.76 E-value=0.017 Score=54.39 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
++.+++++|++|+||||+...|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999998876553
No 485
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.74 E-value=0.11 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLA 204 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA 204 (481)
...++++|++|+||||+...|+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999999998875
No 486
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.72 E-value=0.075 Score=52.86 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~ 209 (481)
+..++++|++|+||||++..++..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999987753
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.72 E-value=0.017 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
+|.+|++.|..|+||||++..|+.+|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367999999999999999999998774
No 488
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.66 E-value=0.027 Score=58.94 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK 209 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~ 209 (481)
-++++|++|+|||+++..||..+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999988865
No 489
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.56 E-value=0.15 Score=50.00 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=66.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccCCchhHH---HHHHHhhhhcCCCeecCCCCCC----------
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAI---DQLVILGEQVGVPVYTAGTEVK---------- 249 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~~--~G~kVlLId~D~~rp~ai---dql~~~~~~~gv~v~~~~~~~~---------- 249 (481)
-+++.+++|+|||+++...+..+.. .|.+++++. |.+.-+. +.+..+....++.+........
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 123 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT--PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN 123 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC--SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHT
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc--CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCC
Confidence 5778899999999988776665543 366777665 3443222 2222222223333322211111
Q ss_pred -------HHHHHHHHHHH--HHcCCCcEEEEcCCCCccccHHHHHHHHhhhhccCCceEEEEEeCcchHHHHHHHHHh
Q 011624 250 -------PSQIAKQGLEE--AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTF 318 (481)
Q Consensus 250 -------~~~~l~~~l~~--~~~~~~D~VIIDt~G~~~~d~~~~~el~~i~~~~~p~~vvLVvda~~~~~~~~~~~~f 318 (481)
+.. +...+.. ....+++++|||=+-.+. +......+..+.....+..-++.+.|+........+..+
T Consensus 124 ~~iiv~T~~~-l~~~~~~~~~~~~~~~~iIiDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 199 (367)
T 1hv8_A 124 ANIVVGTPGR-ILDHINRGTLNLKNVKYFILDEADEML-NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKY 199 (367)
T ss_dssp CSEEEECHHH-HHHHHHTTCSCTTSCCEEEEETHHHHH-TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEecHHH-HHHHHHcCCcccccCCEEEEeCchHhh-hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHH
Confidence 111 1122211 012467889998864432 112334444455544455566777776665555555444
No 490
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.53 E-value=0.1 Score=54.23 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 011624 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (481)
Q Consensus 182 ~~~VI~i~G~~GvGKTTta~~LA~~L~ 208 (481)
.|+-+++.|++|+|||+++..+|..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 346688999999999999999998864
No 491
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.44 E-value=0.26 Score=46.10 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeccCCchhHH---HHHHHhhhhcCCCeec
Q 011624 185 VILLAGLQGVGKTTVSAKLAN-YLKK-------QGKSCMLVAGDVYRPAAI---DQLVILGEQVGVPVYT 243 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~-~L~~-------~G~kVlLId~D~~rp~ai---dql~~~~~~~gv~v~~ 243 (481)
-+++.+++|+|||....-.+. .+.. .|.+++++. |.|.-+. +.+..+....++.+..
T Consensus 68 ~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~--Pt~~L~~Q~~~~~~~~~~~~~~~~~~ 135 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA--PTRELAQQVQQVAAEYCRACRLKSTC 135 (242)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC--SSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe--CcHHHHHHHHHHHHHHHhhcCceEEE
Confidence 366778999999988654443 3332 355666554 5553332 2233444444555443
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.40 E-value=0.038 Score=56.15 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Q 011624 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (481)
Q Consensus 184 ~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D 220 (481)
.-++++|++|+||||++..|+..+...|.+|.++|-+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567889999999999999998888889999988754
No 493
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.35 E-value=0.1 Score=53.02 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=23.5
Q ss_pred ccCCCCEEEEEEcCCCCCHHHHHHHHHHHH
Q 011624 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYL 207 (481)
Q Consensus 178 ~~~~~~~VI~i~G~~GvGKTTta~~LA~~L 207 (481)
+.-.+..++++.|++|+||||+...|+..+
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 333456799999999999999988777443
No 494
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.038 Score=58.56 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCch
Q 011624 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (481)
Q Consensus 183 ~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~rp 224 (481)
++.++++|++|+||||++..+|..+ |..+..+++...+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 4688999999999999999998776 88888888876654
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.28 E-value=0.025 Score=53.09 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=27.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
.++.+|++.|+.|+||||++..|+.. +.+|.+..-
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 45789999999999999999888754 556665543
No 496
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.33 Score=46.22 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEcCCCCCHHHHHHHHHH-HHHH------cCCeEEEEeccCCchhH
Q 011624 186 ILLAGLQGVGKTTVSAKLAN-YLKK------QGKSCMLVAGDVYRPAA 226 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~-~L~~------~G~kVlLId~D~~rp~a 226 (481)
+++.+++|+|||.+..-.+. .+.+ .|.+++++. |.|.-+
T Consensus 94 ~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~--Pt~~La 139 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILS--PTRELA 139 (262)
T ss_dssp CEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC--SSHHHH
T ss_pred EEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEe--CCHHHH
Confidence 67789999999987655443 3332 467777665 455443
No 497
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.19 E-value=0.033 Score=52.44 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCC
Q 011624 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (481)
Q Consensus 181 ~~~~VI~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~D~~ 222 (481)
.++.+|+++|++|+||||++..|+..| |. .++|+|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l---g~--~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF---GF--TYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc---CC--ceecCCCe
Confidence 356789999999999999999888655 43 45677643
No 498
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.15 E-value=0.51 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-H--cCCeEEEEe
Q 011624 185 VILLAGLQGVGKTTVSAKLANYLK-K--QGKSCMLVA 218 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~~L~-~--~G~kVlLId 218 (481)
-+++.+++|+|||.+....+.... . .+.+++++.
T Consensus 42 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 78 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIV 78 (206)
T ss_dssp CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEe
Confidence 367889999999976654333221 1 244566554
No 499
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.15 E-value=0.043 Score=53.26 Aligned_cols=31 Identities=42% Similarity=0.593 Sum_probs=23.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Q 011624 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (481)
Q Consensus 186 I~i~G~~GvGKTTta~~LA~~L~~~G~kVlLId~ 219 (481)
+++.|++|+||||++..||..+ +.....+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence 8899999999999999988654 334444443
No 500
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.11 E-value=0.55 Score=44.33 Aligned_cols=56 Identities=25% Similarity=0.210 Sum_probs=31.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHHc--CCeEEEEeccCCchhHH---HHHHHhhhhcCCCee
Q 011624 185 VILLAGLQGVGKTTVSAKLAN-YLKKQ--GKSCMLVAGDVYRPAAI---DQLVILGEQVGVPVY 242 (481)
Q Consensus 185 VI~i~G~~GvGKTTta~~LA~-~L~~~--G~kVlLId~D~~rp~ai---dql~~~~~~~gv~v~ 242 (481)
-+++.+++|+|||......+. .+... +.+++++. |.|.-+. +.+..+....++.+.
T Consensus 82 ~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~--Ptr~L~~q~~~~~~~~~~~~~~~~~ 143 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT--PTRELAFQISEQFEALGSSIGVQSA 143 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC--SSHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe--CCHHHHHHHHHHHHHHhccCCeeEE
Confidence 467789999999987654443 33333 34566554 4453322 233344444455543
Done!