BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011629
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 97/480 (20%), Positives = 191/480 (39%), Gaps = 76/480 (15%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V +++
Sbjct: 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 169 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 219
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYD 173
D L + + V ++ KF+ RW L + + YD
Sbjct: 220 DGDLLKIQFGGAE-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 278
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 331
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQ 293
++G IKF + IN ++ + G R+IGYWS + + +
Sbjct: 332 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDD-------------- 377
Query: 294 HLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFV------AQGKGTDKFSGYC 347
+G + V + ++ +V A G +++ GYC
Sbjct: 378 ---------------------TSGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYC 416
Query: 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---DAAVGDFAITT 401
+D+ + + + YKL GDG + D +V E VY D A+ IT
Sbjct: 417 VDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITL 474
Query: 402 ERTKMVDFTQPYIESGL-VVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWIL 460
R +++DF++P++ G+ +++ +K ++FL+P ++W ++ V VV++++
Sbjct: 475 VREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLV 534
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 121/307 (39%), Gaps = 68/307 (22%)
Query: 6 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT 65
+++ + W ++I L DD GR L L E+ + + P G++N + L+
Sbjct: 133 EMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDP-GTKN-VTALLME 190
Query: 66 VSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDD 125
+ +R++IL + V AA L M SGYVW+V + + ++ ++
Sbjct: 191 ARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGE---REISGNALRYAP---- 243
Query: 126 IQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAF 185
G++ L++ +E H++ D + ++A A+
Sbjct: 244 -DGIIGLQLINGKNESA--------HIS-------------------DAVGVVAQAVHEL 275
Query: 186 FDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT-GVTGPIKFTSDR 244
E +++ RG + + +I+ G + ++ GVTG ++F D
Sbjct: 276 L---------EKENITDPPRGCV--GNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDG 324
Query: 245 DLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQT 304
D Y ++N+ ++G + +G V+P + +WPG
Sbjct: 325 DRKFANYSIMNLQNRKLVQVGIY---NGTHVIPND----------------RKIIWPGGE 365
Query: 305 TQKPRGW 311
T+KPRG+
Sbjct: 366 TEKPRGY 372
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYC+D+ + +L + KLVP +G ++ + +++ + + D AV
Sbjct: 27 GNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 86
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K++DF++P++ G+ ++
Sbjct: 87 PLTITYVREKVIDFSKPFMTLGISIL 112
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYC+D+ + +L + KLVP +G ++ + +++ + + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K++DF++P++ G+ ++
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYC+D+ + +L + KLVP +G ++ + +++ + + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K++DF++P++ G+ ++
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYC+D+ + +L + KLVP +G ++ + +++ + + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K++DF++P++ G+ ++
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYC+D+ + +L + KLVP +G ++ + +++ + + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K++DF++P++ G+ ++
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 37 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 96
Query: 395 GDFAITTERTKMVDFTQPYIESGL-VVVAPIKKLNSNAWAFLN 436
AIT R K++DF++P++ G+ ++ N ++FLN
Sbjct: 97 APLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLN 139
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G ++ +++ ++R + + D AV
Sbjct: 27 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAV 86
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 87 APLAITYVREKVIDFSKPFMTLGISIL 113
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITCVREKVIDFSKPFMTLGISIL 114
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYCID+ + +L ++ +LV +G + + +++ + + D AV
Sbjct: 28 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVA 87
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K +DF++P++ G+ ++
Sbjct: 88 PLTITHVREKAIDFSKPFMTLGVSIL 113
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFDLLRLVSEEVYDAAVG 395
G D+F GYCID+ + +L ++ +LV +G + + +++ + + D AV
Sbjct: 30 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVA 89
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
IT R K +DF++P++ G+ ++
Sbjct: 90 PLTITHVREKAIDFSKPFMTLGVSIL 115
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R K++DF++P++ G+ ++
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 40 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 97
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 98 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 130
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH---NSPKRFDLLRL 384
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG P+ +
Sbjct: 33 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 90
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY D AV IT R +++DF++P++ G+ ++ IKK
Sbjct: 91 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM--IKK 133
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH---NSPKRFDLLRL 384
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG P+ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY D AV IT R +++DF++P++ G+ ++ IKK
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 56 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 113
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 114 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 146
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH---NSPKRFDLLRL 384
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG P+ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY D AV IT R +++DF++P++ G+ ++ IKK
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 28 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 85
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 86 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 118
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 43 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 100
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 101 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 133
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 39 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 96
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 97 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 129
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH---NSPKRFDLLRL 384
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG P+ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY D AV IT R +++DF++P++ G+ ++ IKK
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH---NSPKRFDLLRL 384
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG P+ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY D AV IT R +++DF++P++ G+ ++ IKK
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 42/307 (13%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGD--KLAEKRCRLSHKVPLSPKGSRNQII 60
A+ DIV GW V L + +G G+ + K A C ++ V + P+ +++ I
Sbjct: 176 AMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLC-IAQSVRI-PQERKDRTI 233
Query: 61 DTLLTVSSMM----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD-WLSSILDTD 115
D + ++ SR +++ D ++L AAK + ++W+ +D W S I
Sbjct: 234 DFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSKI---- 288
Query: 116 SQLHSEKMDDIQGVLTLRMYTQSSEE-KRKFVTRWRHLTRRN---------TLNGPIGLN 165
+ LH + D +G +T++ + E F +R RRN N + ++
Sbjct: 289 NPLHQHE-DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTIS 347
Query: 166 SFGLYAYDTLWLLAHAIG--AFFDQGGNISFSEDS------KLSELSR---GDMRFSSVS 214
D IG + ++Q G + F D+ L +++ D R
Sbjct: 348 GSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE 407
Query: 215 IFN-GGKMLLDNILQVNMTGVTG-PIKFTSDRDLINP----AYEVINVIGTGSRRIGYWS 268
+ GGK LL I VN G G P+ F + D Y+ N G R IG W+
Sbjct: 408 MEQAGGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWT 467
Query: 269 NHSGLSV 275
+ L++
Sbjct: 468 DELQLNI 474
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 26 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 83
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 84 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 116
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 24 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 81
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 82 IAIAPLTITLCREEVIDFSKPFMSLGISIM--IKK 114
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 25 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 82
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 83 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 115
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 25 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 82
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 83 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 115
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 24 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 81
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 82 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 25 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 82
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 83 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 115
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 24 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 81
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 82 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 26 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKAD 83
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 84 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 116
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLV---PFGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + +L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R +++DF++P++ G+ ++
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 24 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKAD 81
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 82 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 114
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVY---D 391
+G +++ GYC+D+ + + + YKL GDG + D +V E VY D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKWGARDADTKIWNGMVGELVYGKAD 84
Query: 392 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 117
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RL 384
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D +
Sbjct: 15 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGM 72
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY + A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 73 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 115
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RL 384
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D +
Sbjct: 13 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY + A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 71 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 113
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 328 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RL 384
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D +
Sbjct: 13 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 385 VSEEVY---DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
V E VY + A+ IT R +++DF++P++ G+ ++ IKK
Sbjct: 71 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIM--IKK 113
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 125/306 (40%), Gaps = 40/306 (13%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLS-PKGSRNQIID 61
A+ DIV GW V L + +G G+ + +++++ LS + P+ +++ ID
Sbjct: 176 AMVDIVKALGWNYVSTLASEGSYGEKGVESF-TQISKEAGGLSIAQSVRIPQERKDRTID 234
Query: 62 TLLTVSSMM----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD-WLSSILDTDS 116
+ ++ SR +++ D ++L AAK + ++W+ +D W S I +
Sbjct: 235 FDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSKI----N 289
Query: 117 QLHSEKMDDIQGVLTLRMYTQSSEE-KRKFVTRWRHLTRRN---------TLNGPIGLNS 166
LH + D +G +T++ + E F +R RRN N + ++
Sbjct: 290 PLHQHE-DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISG 348
Query: 167 FGLYAYDTLWLLAHAIG--AFFDQGGNISFSEDS------KLSELSR---GDMRFSSVSI 215
D IG + ++Q G + F D+ L +++ D R +
Sbjct: 349 SKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEM 408
Query: 216 FN-GGKMLLDNILQVNMTGVTG-PIKFTSDRDLINP----AYEVINVIGTGSRRIGYWSN 269
GGK LL I VN G G P+ F + D Y+ N G R IG W++
Sbjct: 409 EQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD 468
Query: 270 HSGLSV 275
L++
Sbjct: 469 ELQLNI 474
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R +++DF++P++ G+ ++
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R +++DF++P++ G+ ++
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 339 GTDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSPKRFD-LLRLVSEEVYDAAV 394
G D+F GYCID+ + L + +LV +G + +++ ++R + + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 395 GDFAITTERTKMVDFTQPYIESGLVVV 421
AIT R +++DF++P++ G+ ++
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 26/286 (9%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V +++
Sbjct: 118 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 176
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 177 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 227
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYD 173
D L + V ++ KF+ RW L + + YD
Sbjct: 228 DGDLLKIQFGG-ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 286
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 287 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 339
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPE 279
++G IKF + IN ++ + G R+IGYWS + V E
Sbjct: 340 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTE 385
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 344 SGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLR-LVSEEVYD---AAVGDFAI 399
G+CID+ + + + Y L +G + K ++ ++ E VY AVG I
Sbjct: 58 KGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTI 115
Query: 400 TTERTKMVDFTQPYIESGLVVV 421
ER+++VDF+ P++E+G+ V+
Sbjct: 116 NEERSEVVDFSVPFVETGISVM 137
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 33/284 (11%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ ++D++ W + LY D D G + + A+ +K + +S V S Q++
Sbjct: 119 GALLSLLDHYEWNCFVFLY-DTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLL 177
Query: 61 DTL-------LTVSSMMSRIL-ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 112
+ L + + R+ IL ++++ KH++ GY +I+ + +
Sbjct: 178 EELDRRQEKKFVIDCEIERLQNILE-------QIVSVGKHVK----GYHYIIANLGFKDI 226
Query: 113 DTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAY 172
+ +H V ++ ++ K + RW+ L +R Y
Sbjct: 227 SLERFIHGGA-----NVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTY 281
Query: 173 DTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT 232
D + ++A + Q +IS ++ GD + + + G + + QV +
Sbjct: 282 DGVLVMAETFRSLRRQKIDISRRGNA-------GDCLANPAAPWGQGIDMERTLKQVRIQ 334
Query: 233 GVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 276
G+TG ++F +N +V + TG R++GYW++ L ++
Sbjct: 335 GLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 114/286 (39%), Gaps = 26/286 (9%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V ++++
Sbjct: 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMY 168
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 169 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 219
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNG-PIGLNSFGLYAYD 173
D L + V ++ KF+ RW L + + YD
Sbjct: 220 DGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTTTIKYTSALTYD 278
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 331
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPE 279
++G IKF + IN ++ + G R+IGYWS + V E
Sbjct: 332 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTE 377
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVY---DAAVGDFAI 399
G+CID+ + + ++ LV G K+ D + ++ E Y D A+G I
Sbjct: 61 GFCIDILKRLAHTIGFSYDLYLVTNG---KHGKKIDGVWNGMIGEVFYQRADMAIGSLTI 117
Query: 400 TTERTKMVDFTQPYIESGLVVV 421
ER+++VDF+ P++E+G+ V+
Sbjct: 118 NEERSEIVDFSVPFVETGISVM 139
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 26/275 (9%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V +++
Sbjct: 108 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 166
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 167 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 217
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYD 173
D L + V ++ KF+ RW L + + YD
Sbjct: 218 DGDLLKIQFGG-ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 276
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 277 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 329
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 268
++G IKF + IN ++ + G R+IGYWS
Sbjct: 330 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 364
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 20/284 (7%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS--HKVPLSPKGSRNQII 60
A+ I+D++ W+ + +Y D D G + + + D AEK +++ + + + +G R
Sbjct: 118 ALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQ 176
Query: 61 DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 120
D + R++++ +L L GY +I+ + +D D
Sbjct: 177 D----LEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANL--GFMDIDLNKFK 230
Query: 121 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYDTLWLLA 179
E ++ G L YT + + + +WR R+ + YD + ++A
Sbjct: 231 ESGANVTG-FQLVNYTDTIPAR--IMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMA 287
Query: 180 HAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239
A + Q +IS ++ GD + + G + + QV G+TG ++
Sbjct: 288 EAFQSLRRQRIDISRRGNA-------GDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQ 340
Query: 240 FTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYK 283
F N VI + G R+IGYW+ E L++
Sbjct: 341 FNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAALEVLFQ 384
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 26/275 (9%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V +++
Sbjct: 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 169 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 219
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYD 173
D L + V ++ KF+ RW L + + YD
Sbjct: 220 DGDLLKIQFGG-ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 278
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 331
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 268
++G IKF + IN ++ + G R+IGYWS
Sbjct: 332 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 26/275 (9%)
Query: 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 60
A+ +++Y+ W LY D D G + + A+ D AEK+ +++ V +++
Sbjct: 113 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 171
Query: 61 DTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 114
+L + R +IL DI +V+ KH++ GY +I+ +++ T
Sbjct: 172 RSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----GYHYII----ANLGFT 222
Query: 115 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYD 173
D L + V ++ KF+ RW L + + YD
Sbjct: 223 DGDLLKIQFGG-ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 281
Query: 174 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233
+ ++ A Q IS ++ GD + + G + + QV + G
Sbjct: 282 AVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEG 334
Query: 234 VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 268
++G IKF + IN ++ + G R+IGYWS
Sbjct: 335 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 369
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 317 GRHLRIGV----PSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDG 372
G LRIGV P ++ G+ T K +GY +D+ + + + + +L P
Sbjct: 7 GITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPNTS 66
Query: 373 HNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQ 411
+ L+ ++ YD A+GD +T+ R ++V F+
Sbjct: 67 YTG-----LVLALANGDYDIAIGDITVTSARREIVAFSN 100
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 86 VLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSS----EE 141
VL A L M + Y +I+T IL D ++D +L M+ S E
Sbjct: 207 VLRKASELGMTSAFYKYILTTMDFPILHLDG-----IVEDSSNILGFSMFNTSHPFYPEF 261
Query: 142 KRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLS 201
R WR +T GP L++ ++ D + ++ A+ E ++
Sbjct: 262 VRSLNMSWRENCEASTYPGP-ALSAALMF--DAVHVVVSAV------------RELNRSQ 306
Query: 202 ELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGS 261
E+ + +S +I+ G L++ + V G+TG ++F S N ++ G
Sbjct: 307 EIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH 366
Query: 262 RRIGYWSNHSGLSV 275
R IG W ++ L++
Sbjct: 367 REIGVWYSNRTLAM 380
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 6 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCR-----------LSHKVPLSPK- 53
+++ F W +VI + DD GR L L K + LS+ PK
Sbjct: 131 EMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKA 190
Query: 54 --------GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 105
G++N + LL + +R++IL + V +A L M +GYVW+V
Sbjct: 191 DKVLQFEPGTKN-LTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVG 249
Query: 106 D 106
+
Sbjct: 250 E 250
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 320 LRIGVPSQVIYPEFVAQGKGTDK-FSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKR 378
L++GV V P FV G+G + F+G +DV+ AV E + Y NS
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVR------QNSISA 56
Query: 379 FDLLRLVSEEVYDAAVGDFAITTERTKM--VDFTQPYIESGLVVVAP 423
+ V+E D +G ++T ER + + FTQPY SG+ ++ P
Sbjct: 57 G--ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 320 LRIGVPSQVIYPEFVAQGKGTDK-FSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKR 378
L++GV V P FV G+G + F+G +DV+ AV E + Y NS
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVR------QNSISA 56
Query: 379 FDLLRLVSEEVYDAAVGDFAITTERTKM--VDFTQPYIESGLVVVAP 423
+ V+E D +G ++T ER + + FTQPY SG+ ++ P
Sbjct: 57 G--ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPK 377
+ L +G + + EF K DK+ G+ +D++ + + + YK+ P
Sbjct: 24 KELVVGTDTSFMPFEF----KQGDKYVGFDLDLWAEIAKGAGWT--YKIQPM-------D 70
Query: 378 RFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVV 421
L+ + + D A+ I ER K +DF+ PY +SGL +
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAM 114
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 345 GYCIDVFTAVLELLPYAVPYKLVPFG------DGHNSPKRFDLLRLVSEEVYDAAVGDFA 398
GYCID+ + E + + +V G +GH + DLL + + AV F+
Sbjct: 70 GYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTA----NMAVTSFS 125
Query: 399 ITTERTKMVDFTQPYIESGLVVV 421
I T R++++DFT P+ + L ++
Sbjct: 126 INTARSQVIDFTSPFFSTSLGIL 148
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLR------LVSEEVY---DAAVG 395
GYCID+ + E L A ++L GDG ++ LR LV + + AV
Sbjct: 68 GYCIDLLERLAEDL--AFDFELYIVGDG-----KYGALRDGRWTGLVGDLLAGRAHMAVT 120
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
F+I + R+++VDFT P+ + L ++
Sbjct: 121 SFSINSARSQVVDFTSPFFSTSLGIM 146
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 40/298 (13%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDT 62
A+ DIV + W V A++ + ++G +G+ A D A++ ++H +
Sbjct: 188 AMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKL 247
Query: 63 LLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM--MESGYVWIVTDWLSSILDTDSQLHS 120
L ++S + + ++ + G+ V +R + ++ + +D + D
Sbjct: 248 LKKLTSHLPKARVVACF-CEGMTVRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQR 306
Query: 121 EKMDDIQGVLT-----------LRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGL 169
E + I L L++ +++ F W+H + P + +
Sbjct: 307 EAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGFPQENSKYNK 366
Query: 170 YAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRG--DMRFSSVSIFNG--------- 218
+L L H + Q + F ++ S ++ G +M+ S + G
Sbjct: 367 TCNSSLTLKTHHV-----QDSKMGFVINAIYS-MAYGLHNMQMSLCPGYAGLCDAMKPID 420
Query: 219 GKMLLDNILQVNMTGVTG-PIKFTSDRDLINPA-YEVINVIGTGSR-----RIGYWSN 269
G+ LL+++++ N TGV+G I F + D +P YE++N G +G W N
Sbjct: 421 GRKLLESLMKTNFTGVSGDTILFDENGD--SPGRYEIMNFKEMGKDYFDYINVGSWDN 476
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 11 FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCR-----------LSHKVPLSPK------ 53
F W +VI + DD GR L L K + LS+ PK
Sbjct: 137 FNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQ 196
Query: 54 ---GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 106
G++N + LL + +R++IL + V +A L +GYVW+V +
Sbjct: 197 FEPGTKN-LTALLLEAKELEARVIILSASEDDATAVYKSAAXLDXTGAGYVWLVGE 251
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 74 LILHTYDI-WGLEVLNAAKHLRMMESGYVWIVTDW--------LSSILDTDSQLHSEKMD 124
+IL +D +V A M S Y WI+ W + + ++ L +
Sbjct: 209 IILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLA 268
Query: 125 DIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR--NTLNGPIGLNSFGLYAYDTLWLLAHAI 182
++G + + SS++ + + R N +G + F YAYD +W++A +
Sbjct: 269 AMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTL 328
Query: 183 GAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG-----GKMLLDNILQVNMTGVTGP 237
+ E R + FN G+++L+ + + N GVTG
Sbjct: 329 ---------------QRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ 373
Query: 238 IKF 240
+ F
Sbjct: 374 VVF 376
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 143 RKFVTRWRHLTRRN---TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 199
++F+ RW L R N P+ S +D + ++A A Q ++S
Sbjct: 253 QQFIQRWVRLDEREFPEAKNAPLKYTS--ALTHDAILVIAEAFRYLRRQRVDVS------ 304
Query: 200 LSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT 259
S GD + ++ G + + V + G+TG I+F + N +V + +
Sbjct: 305 -RRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVS 363
Query: 260 GSRRIGYWSNHS 271
GSR+ GYW+ +
Sbjct: 364 GSRKAGYWNEYE 375
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 338 KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397
K D + G+ +D++ A+ + L + Y+L P P L ++ V D A+
Sbjct: 19 KQGDLYVGFDVDLWAAIAKELK--LDYELKPMDFSGIIP------ALQTKNV-DLALAGI 69
Query: 398 AITTERTKMVDFTQPYIESGLVVVAPIKKLNSN 430
IT ER K +DF+ Y +SGL+V+ K N+N
Sbjct: 70 TITDERKKAIDFSDGYYKSGLLVMV---KANNN 99
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNS 375
+ R L G + EFV +K G+ IDV AV + + + +
Sbjct: 4 SARTLHFGTSATYAPYEFV---DADNKIVGFDIDVANAVCKEMQAECSF----------T 50
Query: 376 PKRFD-LLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
+ FD L+ + + +DA + +T +R + V F+QPY E GL V +K
Sbjct: 51 NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTRK 101
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 329 IYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEE 388
+ P FV KG + SG+ ID++ ++ + + KL+ + +L+ + +
Sbjct: 11 VIPPFVLSNKG--ELSGFSIDLWRSIATQI--GIESKLIEYSSVP------ELISAIKDN 60
Query: 389 VYDAAVGDFAITTERTKMVDFTQPYIESGLVVV 421
+ + +IT ER + DF+ P SGL ++
Sbjct: 61 KVNLGIAAISITAEREQNFDFSLPIFASGLQIM 93
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 391 DAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426
D + +F T ER + VDF PY++ L VV+P K
Sbjct: 119 DLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154
>pdb|2IEE|A Chain A, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574.
pdb|2IEE|B Chain B, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574
Length = 271
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 303 QTTQKPRGWVFPNNGRHLRIGVPSQVIYP-EFVAQGKGTDKFSGYCIDVFTAVLELLPYA 361
+ K GW + + + S +YP + G+DK +GY ++V + L
Sbjct: 6 EADSKDTGWEQIKDKGKIVVAT-SGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK 64
Query: 362 VPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPY 413
V +K DG L V+ DAA D +T +R + F+ PY
Sbjct: 65 VEFKEXGI-DGX--------LTAVNSGQVDAAANDIDVTKDREEKFAFSTPY 107
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 390 YDAAVGDFAITTERTKMVDFTQPYIESGLVVVA 422
+DA G ITT R K VDFT PY + + +A
Sbjct: 62 FDALFGGXNITTARQKEVDFTDPYYTNSVSFIA 94
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 21/100 (21%)
Query: 332 EFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEV 389
E++ +GK G+ +D+ AV++ + Y+L G +D L L S+EV
Sbjct: 56 EYMQKGK----IVGFDVDLLDAVMKAA--GLDYELKNIG--------WDPLFASLQSKEV 101
Query: 390 YDAAVGDFAITTERTKMVDFTQPYIESGLVVV----APIK 425
D + IT ER + DF+ PY E+ V++ +P+K
Sbjct: 102 -DMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVK 140
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRL-------SHKVPLSP-KG 54
A+A+I+ +F W V + + D+G GI A E+ RL + KV S +
Sbjct: 176 AMAEILRFFNWTYVSTVASEGDYGETGIEAF-----EQEARLRNICIATAEKVGRSNIRK 230
Query: 55 SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 106
S + +I LL + +L + + D E++ AA + + + W+ +D
Sbjct: 231 SYDSVIRELLQKPNARVVVLFMRSDD--SRELIAAANRVN---ASFTWVASD 277
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 345 GYCIDVFTAVLELLPYAVPYKLVPFGD-------GHNSPKRFDLL--RLVSEEVYDAAVG 395
G+CID+ + + + LV G +++ K ++ + L+S + D V
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA-DMIVA 123
Query: 396 DFAITTERTKMVDFTQPYIESGLVVV 421
I TER + ++F++P+ GL ++
Sbjct: 124 PLTINTERAQYIEFSKPFKYQGLTIL 149
>pdb|3HV1|A Chain A, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
pdb|3HV1|B Chain B, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
Length = 268
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 305 TQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPY 364
TQK + W + ++IG + + P + G+ + G+ ID+ AV +L V +
Sbjct: 9 TQKDQ-WQTYTKEKKIKIGFDATFV-PXGYEEKDGS--YIGFDIDLANAVFKLYGIDVEW 64
Query: 365 KLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVV 421
+ + + K +L + +++ +++T ER + DFT+PY + V+V
Sbjct: 65 QAIDW-----DXKETELKNGTIDLIWNG----YSVTDERKQSADFTEPYXVNEQVLV 112
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 158 LNGPI----GLNSFG----LYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 199
LNGP+ G G A WLL AIG +F +G N+S S S+
Sbjct: 471 LNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYFPEGANLSLSTQSQ 520
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 158 LNGPI----GLNSFG----LYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 199
LNGP+ G G A WLL AIG +F +G N+S S S+
Sbjct: 493 LNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYFPEGANLSLSTQSQ 542
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQIID 61
A+A+I+ +F W V + + D+G GI A E+ RL + + + K R+ I
Sbjct: 175 AMAEILRFFNWTYVSTVASEGDYGETGIEAF-----EQEARLRNISIATAEKVGRSNIRK 229
Query: 62 TLLTVSSMM-----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 106
+ +V + +R+++L E++ AA + + W+ +D
Sbjct: 230 SYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASR---ANASFTWVASD 276
>pdb|3I6V|A Chain A, Crystal Structure Of A Periplasmic HisGLUGLNARGOPINE
FAMILY- Binding Protein From Silicibacter Pomeroyi In
Complex With Lysine
Length = 232
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 390 YDAAVGDFAITTERTKMVDFTQPYI 414
YD + +IT ER +++DFTQ YI
Sbjct: 65 YDTIIAGMSITDERDEVIDFTQNYI 89
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 391 DAAVGDFAITTERTKMVDFTQP-YIESGLVVVAPIKKLNSNAWAFLNPFT 439
D A +IT +R K++DF++P YI S +V K+ N LN ++
Sbjct: 90 DVAFSGISITDKRKKVIDFSEPYYINSFYLVSXANHKITLNNLNELNKYS 139
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 391 DAAVGDFAITTERTKMVDFTQP-YIESGLVVVAPIKKLNSNAWAFLNPFT 439
D A +IT +R K++DF++P YI S +V K+ N LN ++
Sbjct: 70 DVAFSGISITDKRKKVIDFSEPYYINSFYLVSXANHKITLNNLNELNKYS 119
>pdb|1XT8|A Chain A, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
pdb|1XT8|B Chain B, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
Length = 292
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 391 DAAVGDFAITTERTKMVDFTQPYIESGLVVVAP 423
D + +F T +R + VDF PY++ L V P
Sbjct: 108 DIILANFTQTPQRAEQVDFCSPYMKVALGVAVP 140
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 46
A+ DIV + W V A++ + ++G +G+ A + A++ ++H
Sbjct: 187 AMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAH 230
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 375 SPKRFD-LLRLVSEEVYDAAVGDFAITTERTKMVDFTQPY 413
SP FD +L V D A+ + T ER+K+ DF+ PY
Sbjct: 86 SPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPY 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,175,907
Number of Sequences: 62578
Number of extensions: 656601
Number of successful extensions: 1456
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 113
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)