Query 011629
Match_columns 481
No_of_seqs 351 out of 2857
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6.8E-55 2.3E-59 470.0 36.4 418 2-469 110-543 (823)
2 4gpa_A Glutamate receptor 4; P 100.0 5.4E-36 1.9E-40 294.6 26.9 260 2-276 119-378 (389)
3 3ks9_A Mglur1, metabotropic gl 100.0 5.7E-35 2E-39 295.1 24.2 269 2-310 186-496 (496)
4 3sm9_A Mglur3, metabotropic gl 100.0 9.9E-35 3.4E-39 292.1 23.4 260 2-303 174-477 (479)
5 3o21_A Glutamate receptor 3; p 100.0 9.3E-34 3.2E-38 278.2 27.8 258 2-275 119-379 (389)
6 2e4u_A Metabotropic glutamate 100.0 2E-33 6.8E-38 288.4 27.4 268 2-313 175-486 (555)
7 3hsy_A Glutamate receptor 2; l 100.0 2.1E-32 7.2E-37 267.5 25.4 258 2-274 110-372 (376)
8 3mq4_A Mglur7, metabotropic gl 100.0 4.2E-34 1.4E-38 288.2 12.9 247 2-268 175-467 (481)
9 3saj_A Glutamate receptor 1; r 100.0 1.8E-31 6E-36 261.8 23.6 257 2-275 117-376 (384)
10 3qel_B Glutamate [NMDA] recept 100.0 4.3E-31 1.5E-35 256.0 17.1 219 2-269 125-351 (364)
11 3qek_A NMDA glutamate receptor 100.0 2.7E-30 9.4E-35 253.4 22.1 236 2-303 128-384 (384)
12 1jdp_A NPR-C, atrial natriuret 100.0 8.9E-30 3E-34 254.5 25.0 238 2-271 143-396 (441)
13 3om0_A Glutamate receptor, ion 100.0 7.7E-30 2.6E-34 251.0 23.4 253 2-276 128-381 (393)
14 4f11_A Gamma-aminobutyric acid 100.0 1.4E-29 4.6E-34 252.6 19.3 264 2-309 143-424 (433)
15 1dp4_A Atrial natriuretic pept 100.0 3.7E-29 1.3E-33 249.6 21.8 261 2-311 135-420 (435)
16 3h6g_A Glutamate receptor, ion 100.0 1.6E-28 5.4E-33 241.8 23.6 251 2-276 127-383 (395)
17 3td9_A Branched chain amino ac 99.8 1.9E-19 6.6E-24 174.9 19.9 221 2-270 137-363 (366)
18 4evq_A Putative ABC transporte 99.8 1.1E-18 3.6E-23 170.3 22.2 222 2-269 140-363 (375)
19 1usg_A Leucine-specific bindin 99.8 3.6E-19 1.2E-23 171.5 17.9 217 2-264 126-345 (346)
20 3h5l_A Putative branched-chain 99.8 5.3E-19 1.8E-23 175.1 18.3 222 2-261 145-388 (419)
21 3ipc_A ABC transporter, substr 99.8 3.8E-19 1.3E-23 172.2 16.6 222 2-270 126-352 (356)
22 4eyg_A Twin-arginine transloca 99.8 1.2E-18 4.1E-23 169.4 19.7 225 2-269 128-359 (368)
23 3hut_A Putative branched-chain 99.8 1.5E-18 5.3E-23 168.0 19.5 223 2-270 128-354 (358)
24 3i45_A Twin-arginine transloca 99.8 1.5E-18 5.2E-23 169.9 19.3 229 2-274 131-364 (387)
25 3i09_A Periplasmic branched-ch 99.8 9.1E-18 3.1E-22 163.7 19.3 212 2-259 129-341 (375)
26 3n0w_A ABC branched chain amin 99.7 2.3E-17 7.8E-22 161.1 17.7 213 2-259 131-345 (379)
27 3eaf_A ABC transporter, substr 99.7 4.8E-17 1.6E-21 159.5 19.9 229 2-270 129-372 (391)
28 3lkb_A Probable branched-chain 99.7 2.9E-17 1E-21 161.1 17.9 232 2-271 131-376 (392)
29 4f06_A Extracellular ligand-bi 99.7 1.3E-16 4.4E-21 155.2 21.5 216 2-257 128-346 (371)
30 3lop_A Substrate binding perip 99.7 9.5E-17 3.3E-21 155.8 17.0 217 2-261 130-353 (364)
31 1pea_A Amidase operon; gene re 99.7 2.5E-16 8.5E-21 154.1 19.9 226 2-267 129-357 (385)
32 3snr_A Extracellular ligand-bi 99.7 1.7E-16 6E-21 153.6 18.1 224 2-264 124-361 (362)
33 3sg0_A Extracellular ligand-bi 99.7 1.9E-16 6.6E-21 154.7 14.6 225 2-264 148-385 (386)
34 4gvo_A LMO2349 protein; struct 99.6 1.4E-16 4.7E-21 145.4 6.8 113 316-440 7-121 (243)
35 4gnr_A ABC transporter substra 99.6 7E-15 2.4E-19 141.9 18.9 215 2-267 131-351 (353)
36 3n0x_A Possible substrate bind 99.6 3.1E-15 1.1E-19 145.6 14.8 207 2-258 131-346 (374)
37 4h5g_A Amino acid ABC superfam 99.6 2.1E-16 7.3E-21 144.1 5.6 112 317-439 11-125 (243)
38 1yae_A Glutamate receptor, ion 99.6 4.3E-16 1.5E-20 147.7 6.8 122 315-439 10-142 (312)
39 1pb7_A N-methyl-D-aspartate re 99.6 2E-15 6.9E-20 141.6 5.7 114 317-436 40-163 (292)
40 3g3k_A Glutamate receptor, ion 99.6 3.7E-15 1.3E-19 137.2 7.2 119 317-439 3-131 (259)
41 1mqi_A Glutamate receptor 2; G 99.5 9.8E-15 3.3E-19 134.6 7.1 119 317-439 3-131 (263)
42 3kzg_A Arginine 3RD transport 99.5 2.2E-14 7.5E-19 130.0 8.7 110 318-440 3-113 (237)
43 3i6v_A Periplasmic His/Glu/Gln 99.5 1.7E-14 5.9E-19 130.4 7.5 98 317-426 4-101 (232)
44 3tql_A Arginine-binding protei 99.5 4.5E-14 1.5E-18 126.7 9.4 111 318-440 2-112 (227)
45 2v3u_A Glutamate receptor delt 99.5 2E-14 7E-19 132.5 7.3 115 317-436 2-124 (265)
46 3kbr_A Cyclohexadienyl dehydra 99.5 2.2E-14 7.6E-19 130.1 6.2 109 316-436 13-122 (239)
47 3k4u_A Binding component of AB 99.5 4.2E-14 1.4E-18 128.9 8.1 112 317-440 4-118 (245)
48 4dz1_A DALS D-alanine transpor 99.5 1E-13 3.5E-18 127.5 10.0 114 316-441 27-141 (259)
49 3hv1_A Polar amino acid ABC up 99.5 5.7E-14 1.9E-18 129.9 7.8 114 316-442 19-132 (268)
50 2rc8_A Glutamate [NMDA] recept 99.5 4E-14 1.4E-18 132.9 6.3 102 329-436 58-163 (294)
51 4f3p_A Glutamine-binding perip 99.5 1.4E-13 4.7E-18 125.8 9.6 113 316-441 22-134 (249)
52 2iee_A ORF2, probable ABC tran 99.5 3.2E-14 1.1E-18 131.8 5.3 114 316-441 19-136 (271)
53 1lst_A Lysine, arginine, ornit 99.5 6.3E-14 2.2E-18 127.0 7.0 112 317-440 3-114 (239)
54 3mpk_A Virulence sensor protei 99.5 1.6E-13 5.4E-18 126.9 9.7 113 316-440 30-142 (267)
55 3h7m_A Sensor protein; histidi 99.4 2.5E-13 8.4E-18 122.5 9.8 114 316-442 9-122 (234)
56 4eq9_A ABC transporter substra 99.4 1.3E-13 4.3E-18 125.5 7.1 112 317-441 7-119 (246)
57 3del_B Arginine binding protei 99.4 2.1E-13 7.3E-18 123.8 8.4 112 316-441 9-122 (242)
58 1ii5_A SLR1257 protein; membra 99.4 2.9E-13 9.9E-18 122.0 9.0 112 317-440 3-119 (233)
59 2a5s_A N-methyl-D-aspartate re 99.4 1.9E-13 6.5E-18 127.6 7.9 110 315-426 26-142 (284)
60 1wdn_A GLNBP, glutamine bindin 99.4 5.2E-13 1.8E-17 119.6 10.0 110 318-440 3-112 (226)
61 2y7i_A STM4351; arginine-bindi 99.4 3.6E-13 1.2E-17 121.1 8.4 110 317-440 5-115 (229)
62 2q88_A EHUB, putative ABC tran 99.4 3.8E-13 1.3E-17 123.3 7.6 112 317-441 12-128 (257)
63 3ckm_A YRAM (HI1655), LPOA; pe 99.3 3E-12 1E-16 121.9 11.1 208 2-268 113-323 (327)
64 2pvu_A ARTJ; basic amino acid 99.3 5.2E-12 1.8E-16 116.9 9.7 111 316-440 40-150 (272)
65 2h4a_A YRAM (HI1655); perplasm 99.3 1.2E-11 4.2E-16 116.9 11.6 203 2-265 111-318 (325)
66 2vha_A Periplasmic binding tra 99.3 3.7E-12 1.3E-16 118.9 7.8 112 317-441 16-134 (287)
67 2pyy_A Ionotropic glutamate re 99.3 2.3E-12 8E-17 115.5 5.7 110 318-440 3-115 (228)
68 3qax_A Probable ABC transporte 99.2 1.1E-11 3.9E-16 114.0 8.0 112 317-441 30-143 (268)
69 4i62_A Amino acid ABC transpor 99.2 9.8E-12 3.3E-16 114.6 7.4 113 317-441 38-154 (269)
70 2yln_A Putative ABC transporte 99.2 1.4E-11 4.8E-16 114.8 8.4 112 317-441 56-168 (283)
71 1xt8_A Putative amino-acid tra 99.2 1.9E-11 6.6E-16 114.3 8.8 112 317-441 43-157 (292)
72 2yjp_A Putative ABC transporte 99.2 1.5E-11 5.1E-16 115.0 7.2 111 318-441 55-168 (291)
73 2v25_A Major cell-binding fact 99.1 6.1E-11 2.1E-15 108.5 7.8 112 317-440 37-151 (259)
74 2ozz_A Hypothetical protein YH 97.8 6.4E-06 2.2E-10 72.4 2.6 76 340-426 27-108 (231)
75 3n5l_A Binding protein compone 96.7 0.001 3.6E-08 62.0 4.0 98 317-435 3-110 (310)
76 3p7i_A PHND, subunit of alkylp 96.2 0.0029 9.9E-08 59.2 3.8 100 317-435 13-120 (321)
77 3ix1_A N-formyl-4-amino-5-amin 94.2 0.056 1.9E-06 49.7 5.7 93 340-441 14-110 (302)
78 2x26_A Periplasmic aliphatic s 92.8 0.087 3E-06 48.6 4.4 99 318-440 3-108 (308)
79 3uif_A Sulfonate ABC transport 92.6 0.1 3.4E-06 49.2 4.6 84 350-442 35-124 (348)
80 3qsl_A Putative exported prote 91.9 0.28 9.6E-06 45.8 6.9 79 354-440 58-141 (346)
81 4ddd_A Immunogenic protein; ss 91.6 0.56 1.9E-05 43.7 8.4 103 317-440 31-149 (327)
82 3ksx_A Nitrate transport prote 91.1 0.32 1.1E-05 45.1 6.2 104 316-442 27-136 (324)
83 3ixl_A Amdase, arylmalonate de 90.5 1.2 4.2E-05 39.2 9.1 84 2-88 106-198 (240)
84 3un6_A Hypothetical protein sa 89.8 0.23 8E-06 46.5 4.1 76 356-440 78-157 (341)
85 3gv0_A Transcriptional regulat 89.5 2 6.7E-05 38.8 10.1 101 4-105 118-222 (288)
86 2h0a_A TTHA0807, transcription 89.0 1.1 3.8E-05 40.1 7.9 101 4-105 105-214 (276)
87 3d8u_A PURR transcriptional re 88.7 2.3 8E-05 37.8 9.9 101 4-105 111-215 (275)
88 3bfj_A 1,3-propanediol oxidore 88.1 1.6 5.6E-05 41.5 8.8 86 4-89 24-113 (387)
89 3ox4_A Alcohol dehydrogenase 2 87.9 0.88 3E-05 43.3 6.6 88 4-91 22-111 (383)
90 3brq_A HTH-type transcriptiona 87.6 1.1 3.8E-05 40.5 7.0 101 4-105 130-234 (296)
91 2x7q_A Ca3427, possible thiami 87.3 0.73 2.5E-05 42.6 5.6 77 351-435 35-118 (321)
92 3gyb_A Transcriptional regulat 87.2 1.3 4.3E-05 39.8 7.1 101 3-105 108-210 (280)
93 1dbq_A Purine repressor; trans 87.1 1.6 5.3E-05 39.4 7.7 101 4-105 117-221 (289)
94 3g85_A Transcriptional regulat 85.9 2.1 7.2E-05 38.5 7.9 101 4-105 118-222 (289)
95 3k4h_A Putative transcriptiona 85.2 2.2 7.4E-05 38.5 7.6 101 4-105 122-226 (292)
96 3hcw_A Maltose operon transcri 85.0 5 0.00017 36.2 10.0 97 5-105 123-226 (295)
97 1rrm_A Lactaldehyde reductase; 84.1 1.5 5.3E-05 41.7 6.2 88 4-91 22-111 (386)
98 2fep_A Catabolite control prot 83.8 2.5 8.4E-05 38.1 7.3 100 4-104 124-228 (289)
99 1o2d_A Alcohol dehydrogenase, 83.7 4 0.00014 38.5 8.9 84 5-89 33-119 (371)
100 1vlj_A NADH-dependent butanol 83.6 3.2 0.00011 39.8 8.3 86 4-89 34-122 (407)
101 3cs3_A Sugar-binding transcrip 83.2 7.8 0.00027 34.4 10.4 98 4-105 109-211 (277)
102 3clk_A Transcription regulator 83.1 2.8 9.5E-05 37.8 7.3 100 4-104 116-218 (290)
103 3qk7_A Transcriptional regulat 82.9 3.3 0.00011 37.4 7.8 101 4-105 117-221 (294)
104 3bbl_A Regulatory protein of L 82.9 3.5 0.00012 37.0 7.9 99 5-104 117-221 (287)
105 3k9c_A Transcriptional regulat 82.0 5.3 0.00018 35.9 8.8 100 4-105 117-219 (289)
106 2xed_A Putative maleate isomer 81.9 10 0.00036 33.9 10.5 78 2-82 135-220 (273)
107 1qpz_A PURA, protein (purine n 81.6 2.7 9.3E-05 38.9 6.8 100 5-105 169-272 (340)
108 3dbi_A Sugar-binding transcrip 81.3 2.6 8.7E-05 39.1 6.5 100 5-105 173-276 (338)
109 3uhj_A Probable glycerol dehyd 81.1 2.4 8.1E-05 40.3 6.2 73 4-80 44-116 (387)
110 3c3k_A Alanine racemase; struc 80.9 5.1 0.00017 35.9 8.2 98 4-105 115-218 (285)
111 2qu7_A Putative transcriptiona 80.8 3.4 0.00012 37.1 7.0 101 4-105 113-221 (288)
112 2rgy_A Transcriptional regulat 80.8 2.5 8.4E-05 38.1 6.1 100 4-104 119-222 (290)
113 1atg_A MODA, periplasmic molyb 79.9 2.6 8.9E-05 36.1 5.7 79 348-435 15-99 (231)
114 3kke_A LACI family transcripti 79.5 4.4 0.00015 36.7 7.4 101 4-104 122-230 (303)
115 2iks_A DNA-binding transcripti 79.0 7 0.00024 35.1 8.6 99 4-105 129-231 (293)
116 2hsg_A Glucose-resistance amyl 78.7 1.9 6.5E-05 39.9 4.6 100 4-104 168-272 (332)
117 2o20_A Catabolite control prot 78.6 2.7 9.3E-05 38.8 5.7 101 4-105 171-273 (332)
118 3kjx_A Transcriptional regulat 78.0 3.1 0.00011 38.6 5.9 100 5-105 177-281 (344)
119 3e3m_A Transcriptional regulat 77.6 7.3 0.00025 36.2 8.5 101 4-105 178-284 (355)
120 3egc_A Putative ribose operon 77.1 2.8 9.6E-05 37.7 5.2 101 4-105 116-220 (291)
121 3ce9_A Glycerol dehydrogenase; 77.0 7.7 0.00026 36.3 8.4 82 4-88 25-108 (354)
122 3g1w_A Sugar ABC transporter; 76.9 17 0.00059 32.5 10.7 101 4-105 116-220 (305)
123 2dgd_A 223AA long hypothetical 76.4 11 0.00039 32.4 8.7 78 2-82 97-183 (223)
124 3bil_A Probable LACI-family tr 75.9 9.2 0.00031 35.5 8.6 99 4-105 175-275 (348)
125 1mkz_A Molybdenum cofactor bio 75.7 8.7 0.0003 31.6 7.4 65 14-80 11-79 (172)
126 3ksm_A ABC-type sugar transpor 75.0 5.9 0.0002 35.1 6.7 90 4-95 114-211 (276)
127 1jq5_A Glycerol dehydrogenase; 74.8 5.7 0.0002 37.4 6.8 82 4-88 23-106 (370)
128 3ctp_A Periplasmic binding pro 74.6 3.9 0.00013 37.7 5.6 99 4-104 163-264 (330)
129 3lft_A Uncharacterized protein 73.7 21 0.00072 31.9 10.3 85 4-94 122-209 (295)
130 4dik_A Flavoprotein; TM0755, e 73.7 38 0.0013 32.3 12.3 93 14-111 266-366 (410)
131 1zbm_A Hypothetical protein AF 73.6 6.9 0.00024 34.9 6.8 51 376-426 45-98 (280)
132 3h5o_A Transcriptional regulat 73.2 7.4 0.00025 35.9 7.2 101 4-105 169-273 (339)
133 3lr1_A Tungstate ABC transport 72.7 5.6 0.00019 34.8 5.7 73 345-426 19-94 (236)
134 2y7p_A LYSR-type regulatory pr 72.5 12 0.00041 31.7 7.9 84 317-426 7-90 (218)
135 3o74_A Fructose transport syst 72.4 12 0.00039 33.0 8.0 98 4-105 111-213 (272)
136 2h3h_A Sugar ABC transporter, 71.6 19 0.00067 32.4 9.6 88 4-94 112-205 (313)
137 3brs_A Periplasmic binding pro 71.4 19 0.00065 31.9 9.4 89 6-96 123-215 (289)
138 3jvd_A Transcriptional regulat 71.0 20 0.00069 32.8 9.6 97 5-105 166-265 (333)
139 3oxn_A Putative transcriptiona 70.5 18 0.00063 30.8 8.8 84 317-426 18-101 (241)
140 3jv9_A OXYR, transcriptional r 70.5 17 0.00058 30.2 8.4 83 318-426 4-86 (219)
141 3gbv_A Putative LACI-family tr 70.3 6.6 0.00023 35.3 6.0 91 3-95 123-223 (304)
142 2f5x_A BUGD; periplasmic bindi 70.1 6.6 0.00023 36.0 5.9 98 318-435 17-129 (312)
143 3muq_A Uncharacterized conserv 69.7 6.7 0.00023 34.3 5.5 73 345-426 19-94 (237)
144 3hs3_A Ribose operon repressor 69.5 11 0.00037 33.5 7.2 94 5-105 115-212 (277)
145 1twy_A ABC transporter, peripl 69.3 13 0.00045 32.8 7.7 69 348-426 43-113 (290)
146 3h75_A Periplasmic sugar-bindi 69.2 26 0.00089 32.2 10.0 91 14-105 146-239 (350)
147 1i6a_A OXYR, hydrogen peroxide 68.2 22 0.00076 29.7 8.7 84 317-426 4-87 (219)
148 3tmg_A Glycine betaine, L-prol 68.0 31 0.0011 30.8 9.9 82 348-439 32-120 (280)
149 2dvz_A BUGE, putative exported 67.9 5.5 0.00019 36.6 4.8 82 345-435 35-133 (314)
150 3ho7_A OXYR; beta-alpha-barrel 67.8 21 0.00071 30.0 8.5 84 317-426 10-93 (232)
151 2qh8_A Uncharacterized protein 67.7 15 0.00051 33.1 7.8 83 4-92 129-214 (302)
152 1us5_A Putative GLUR0 ligand b 67.1 16 0.00056 32.9 8.0 80 349-437 38-131 (314)
153 2ioy_A Periplasmic sugar-bindi 67.1 44 0.0015 29.4 10.8 88 6-95 115-207 (283)
154 3rot_A ABC sugar transporter, 66.9 28 0.00097 31.0 9.6 98 4-105 119-223 (297)
155 3jy6_A Transcriptional regulat 66.7 20 0.00067 31.6 8.3 96 4-105 114-215 (276)
156 2g29_A Nitrate transport prote 65.8 3.8 0.00013 39.4 3.4 89 317-426 32-134 (417)
157 2vk2_A YTFQ, ABC transporter p 65.8 19 0.00066 32.3 8.2 90 13-104 128-224 (306)
158 2rjo_A Twin-arginine transloca 65.8 36 0.0012 30.9 10.2 88 7-96 129-222 (332)
159 2b4l_A Glycine betaine-binding 65.4 20 0.00067 31.9 7.9 81 348-437 181-268 (268)
160 3miz_A Putative transcriptiona 65.3 4 0.00014 36.9 3.4 100 4-104 122-230 (301)
161 1jye_A Lactose operon represso 65.0 26 0.0009 32.2 9.1 97 6-105 172-272 (349)
162 2ql3_A Probable transcriptiona 64.6 31 0.0011 28.3 8.9 84 317-426 4-87 (209)
163 4ab5_A Transcriptional regulat 64.0 14 0.00049 30.8 6.6 84 317-426 7-90 (222)
164 3h5t_A Transcriptional regulat 63.9 24 0.00082 32.7 8.6 101 3-104 179-301 (366)
165 2fqx_A Membrane lipoprotein TM 63.9 36 0.0012 30.9 9.6 99 5-105 120-221 (318)
166 3qi7_A Putative transcriptiona 63.2 38 0.0013 31.6 9.5 93 4-98 147-252 (371)
167 1y5e_A Molybdenum cofactor bio 62.9 24 0.00081 28.8 7.3 68 11-80 11-82 (169)
168 3l6g_A Betaine ABC transporter 62.6 46 0.0016 29.2 9.7 80 347-436 17-103 (256)
169 2qpq_A Protein BUG27; alpha/be 62.2 10 0.00035 34.5 5.4 86 341-435 20-120 (301)
170 2hxr_A HTH-type transcriptiona 62.2 40 0.0014 28.4 9.3 84 317-426 29-112 (238)
171 1ixc_A CBNR, LYSR-type regulat 61.6 32 0.0011 30.4 8.8 84 317-426 90-173 (294)
172 2fvy_A D-galactose-binding per 61.3 46 0.0016 29.6 9.9 83 11-94 138-226 (309)
173 4esw_A Pyrimidine biosynthesis 61.1 15 0.00051 33.9 6.6 93 343-443 21-117 (342)
174 2kv5_A FST, putative uncharact 60.7 14 0.00047 20.7 3.5 23 446-468 7-29 (33)
175 3m9w_A D-xylose-binding peripl 60.7 33 0.0011 30.8 8.8 78 14-94 3-83 (313)
176 1byk_A Protein (trehalose oper 60.6 46 0.0016 28.7 9.5 88 4-95 106-196 (255)
177 3gbv_A Putative LACI-family tr 60.5 30 0.001 30.8 8.4 82 14-95 9-95 (304)
178 3huu_A Transcription regulator 60.2 17 0.0006 32.6 6.7 96 4-104 135-235 (305)
179 4fe7_A Xylose operon regulator 60.2 35 0.0012 32.3 9.2 101 4-105 130-237 (412)
180 1ta9_A Glycerol dehydrogenase; 60.1 17 0.00059 35.1 6.9 81 4-87 82-164 (450)
181 3e61_A Putative transcriptiona 60.0 11 0.00036 33.5 5.1 96 4-105 113-211 (277)
182 3l6u_A ABC-type sugar transpor 59.6 30 0.001 30.6 8.2 80 15-96 137-220 (293)
183 3onm_A Transcriptional regulat 59.6 31 0.001 29.3 8.0 82 317-426 26-107 (238)
184 3lmz_A Putative sugar isomeras 59.2 35 0.0012 29.7 8.5 92 3-95 34-127 (257)
185 1gud_A ALBP, D-allose-binding 59.2 63 0.0022 28.5 10.3 95 6-104 124-225 (288)
186 3d02_A Putative LACI-type tran 59.1 42 0.0014 29.8 9.2 91 6-96 119-214 (303)
187 2fn9_A Ribose ABC transporter, 58.9 31 0.001 30.6 8.1 81 12-95 128-215 (290)
188 3hl0_A Maleylacetate reductase 58.9 21 0.00072 33.3 7.0 73 4-80 25-97 (353)
189 1jx6_A LUXP protein; protein-l 58.8 27 0.00093 31.9 7.9 88 6-95 167-258 (342)
190 3p6l_A Sugar phosphate isomera 58.5 51 0.0017 28.7 9.4 92 3-95 26-129 (262)
191 2zzv_A ABC transporter, solute 58.5 10 0.00036 35.4 4.9 64 348-414 53-118 (361)
192 3jzd_A Iron-containing alcohol 58.2 17 0.00059 33.9 6.3 73 4-80 27-99 (358)
193 2l82_A Designed protein OR32; 57.8 39 0.0013 24.8 6.6 81 6-95 20-104 (162)
194 2x7x_A Sensor protein; transfe 56.4 37 0.0013 30.7 8.4 86 7-95 121-212 (325)
195 2pjk_A 178AA long hypothetical 56.1 32 0.0011 28.3 7.0 67 11-79 13-90 (178)
196 3tb6_A Arabinose metabolism tr 55.6 6.9 0.00023 35.1 3.1 101 4-105 128-235 (298)
197 3l49_A ABC sugar (ribose) tran 55.6 39 0.0013 29.9 8.2 79 14-95 6-87 (291)
198 2fyi_A HTH-type transcriptiona 54.8 53 0.0018 27.5 8.7 85 317-426 13-97 (228)
199 4ecf_A ABC-type phosphate tran 54.2 34 0.0012 30.2 7.4 69 348-426 19-91 (264)
200 1oj7_A Hypothetical oxidoreduc 54.0 15 0.00051 35.0 5.3 80 5-88 44-126 (408)
201 3fxq_A LYSR type regulator of 53.9 56 0.0019 29.0 9.1 85 318-426 92-176 (305)
202 3cvg_A Putative metal binding 52.9 19 0.00066 32.4 5.6 72 346-426 34-115 (294)
203 3rfq_A Pterin-4-alpha-carbinol 52.7 23 0.00079 29.5 5.6 65 14-80 31-99 (185)
204 3kn3_A Putative periplasmic pr 52.4 19 0.00065 31.5 5.2 73 345-426 19-94 (242)
205 2is8_A Molybdopterin biosynthe 52.0 22 0.00074 28.9 5.2 64 15-80 3-72 (164)
206 1tjy_A Sugar transport protein 51.7 79 0.0027 28.4 9.8 82 11-94 126-212 (316)
207 3jy6_A Transcriptional regulat 50.9 56 0.0019 28.5 8.4 77 14-95 8-86 (276)
208 4exl_A PBP 1, phosphate-bindin 50.7 53 0.0018 28.9 8.1 69 348-426 19-91 (265)
209 3h75_A Periplasmic sugar-bindi 50.0 40 0.0014 30.9 7.6 78 14-94 4-86 (350)
210 2dri_A D-ribose-binding protei 49.1 84 0.0029 27.3 9.3 87 6-95 115-206 (271)
211 3cfz_A UPF0100 protein MJ1186; 48.6 35 0.0012 30.5 6.7 70 348-426 20-95 (292)
212 3uug_A Multiple sugar-binding 48.4 57 0.002 29.4 8.3 79 14-95 4-85 (330)
213 3pzy_A MOG; ssgcid, seattle st 48.4 23 0.0008 28.7 4.9 64 14-80 8-76 (164)
214 3l49_A ABC sugar (ribose) tran 47.8 33 0.0011 30.3 6.4 92 4-96 114-216 (291)
215 3r26_A Molybdate-binding perip 47.5 20 0.00067 31.1 4.6 70 348-426 22-97 (237)
216 2h9b_A HTH-type transcriptiona 47.2 70 0.0024 28.5 8.6 69 346-426 104-172 (312)
217 3cfx_A UPF0100 protein MA_0280 47.0 36 0.0012 30.4 6.5 70 348-426 20-95 (296)
218 2rin_A Putative glycine betain 46.5 47 0.0016 29.9 7.1 80 349-437 24-113 (298)
219 3l6u_A ABC-type sugar transpor 46.1 45 0.0015 29.5 7.0 79 14-95 9-90 (293)
220 4gd5_A Phosphate ABC transport 46.0 41 0.0014 29.8 6.7 71 349-426 49-122 (279)
221 3gzg_A Molybdate-binding perip 45.1 22 0.00077 31.2 4.6 70 348-426 38-113 (253)
222 3tb6_A Arabinose metabolism tr 45.0 64 0.0022 28.4 7.9 79 14-95 16-100 (298)
223 8abp_A L-arabinose-binding pro 45.0 32 0.0011 30.7 5.8 88 14-104 133-229 (306)
224 3g1w_A Sugar ABC transporter; 44.6 53 0.0018 29.2 7.3 80 14-95 5-87 (305)
225 2h98_A HTH-type transcriptiona 44.4 89 0.003 27.9 8.8 69 346-426 104-172 (313)
226 3iwt_A 178AA long hypothetical 44.2 43 0.0015 27.4 6.0 64 15-80 17-91 (178)
227 3k4h_A Putative transcriptiona 43.8 46 0.0016 29.3 6.7 78 14-95 9-93 (292)
228 3dbi_A Sugar-binding transcrip 42.3 91 0.0031 28.2 8.7 79 13-94 61-143 (338)
229 3lvu_A ABC transporter, peripl 41.9 43 0.0015 29.2 6.1 42 348-398 145-186 (258)
230 3o74_A Fructose transport syst 41.8 29 0.001 30.2 5.0 79 14-95 3-83 (272)
231 2fn9_A Ribose ABC transporter, 41.6 59 0.002 28.6 7.1 78 14-94 3-83 (290)
232 1jx6_A LUXP protein; protein-l 40.9 84 0.0029 28.4 8.2 81 14-94 44-128 (342)
233 4b4k_A N5-carboxyaminoimidazol 40.3 1.4E+02 0.0049 24.4 8.1 63 16-81 25-88 (181)
234 3o1i_D Periplasmic protein TOR 40.2 38 0.0013 30.1 5.5 89 4-96 122-218 (304)
235 3fzv_A Probable transcriptiona 39.9 81 0.0028 27.8 7.8 84 317-426 94-178 (306)
236 3brq_A HTH-type transcriptiona 39.8 1.2E+02 0.004 26.5 8.8 76 13-92 19-98 (296)
237 3d02_A Putative LACI-type tran 39.5 85 0.0029 27.7 7.9 79 14-94 5-86 (303)
238 2g2c_A Putative molybdenum cof 38.9 33 0.0011 27.9 4.3 64 15-80 7-79 (167)
239 3kbq_A Protein TA0487; structu 38.8 46 0.0016 27.2 5.2 62 15-79 5-71 (172)
240 3m9w_A D-xylose-binding peripl 38.7 93 0.0032 27.7 8.0 89 6-96 116-213 (313)
241 1uth_A LYSR-type regulatory pr 38.4 76 0.0026 28.3 7.3 68 347-426 120-187 (315)
242 1tjy_A Sugar transport protein 38.2 48 0.0016 29.9 5.9 79 14-94 4-85 (316)
243 3cij_A UPF0100 protein AF_0094 38.2 60 0.002 28.9 6.5 70 348-426 20-95 (295)
244 3o6p_A Peptide ABC transporter 38.0 47 0.0016 28.3 5.5 42 348-398 115-158 (229)
245 2esn_A Probable transcriptiona 37.2 64 0.0022 28.6 6.6 87 317-426 100-186 (310)
246 3guv_A Site-specific recombina 37.0 1.4E+02 0.0049 23.8 8.1 65 30-94 28-105 (167)
247 8abp_A L-arabinose-binding pro 36.7 1.2E+02 0.0041 26.7 8.4 77 15-95 4-83 (306)
248 3ksm_A ABC-type sugar transpor 36.1 63 0.0022 28.0 6.3 80 15-95 2-85 (276)
249 3pam_A Transmembrane protein; 36.1 45 0.0015 29.1 5.2 42 348-398 144-185 (259)
250 2hzl_A Trap-T family sorbitol/ 36.0 35 0.0012 31.8 4.7 53 349-404 53-105 (365)
251 4grd_A N5-CAIR mutase, phospho 35.9 1.8E+02 0.006 23.7 8.1 71 15-87 14-85 (173)
252 1pq4_A Periplasmic binding pro 35.8 49 0.0017 29.7 5.4 22 55-76 222-243 (291)
253 2fep_A Catabolite control prot 35.7 91 0.0031 27.4 7.3 77 14-94 17-95 (289)
254 3oow_A Phosphoribosylaminoimid 35.4 1.8E+02 0.006 23.5 8.7 65 15-81 7-71 (166)
255 2fvy_A D-galactose-binding per 35.2 91 0.0031 27.6 7.3 78 14-94 3-84 (309)
256 1sw5_A Osmoprotection protein 35.1 71 0.0024 28.2 6.4 82 349-438 23-134 (275)
257 3tsm_A IGPS, indole-3-glycerol 35.0 2.4E+02 0.0081 24.9 10.0 86 3-96 83-171 (272)
258 2fqx_A Membrane lipoprotein TM 34.7 1.6E+02 0.0054 26.5 8.9 63 14-80 5-72 (318)
259 3rf7_A Iron-containing alcohol 34.7 61 0.0021 30.4 6.0 73 4-80 41-119 (375)
260 3ors_A N5-carboxyaminoimidazol 34.5 1.8E+02 0.0062 23.4 7.8 65 15-81 5-69 (163)
261 2pfy_A Putative exported prote 34.0 54 0.0019 29.5 5.5 53 348-403 21-73 (301)
262 1jlj_A Gephyrin; globular alph 33.8 77 0.0026 26.3 5.9 70 9-80 10-88 (189)
263 3kuu_A Phosphoribosylaminoimid 33.6 1.8E+02 0.0063 23.6 7.7 65 15-81 14-78 (174)
264 3rot_A ABC sugar transporter, 33.4 66 0.0023 28.5 6.0 79 15-95 5-87 (297)
265 1ixh_A Phosphate-binding prote 33.4 56 0.0019 29.7 5.5 68 349-426 18-87 (321)
266 2hxw_A Major antigenic peptide 33.2 50 0.0017 28.1 4.9 69 348-426 16-91 (237)
267 3trh_A Phosphoribosylaminoimid 32.4 2E+02 0.0068 23.3 8.1 65 15-81 8-72 (169)
268 3s99_A Basic membrane lipoprot 32.1 1.2E+02 0.0039 28.2 7.5 85 14-106 27-117 (356)
269 2ozz_A Hypothetical protein YH 31.8 93 0.0032 26.8 6.2 67 350-426 126-199 (231)
270 2pfz_A Putative exported prote 31.7 56 0.0019 29.4 5.1 51 348-401 20-70 (301)
271 2dri_A D-ribose-binding protei 31.6 1.2E+02 0.0042 26.2 7.4 78 14-94 2-82 (271)
272 3e61_A Putative transcriptiona 31.4 67 0.0023 28.0 5.6 75 14-94 9-86 (277)
273 1r9l_A Glycine betaine-binding 31.2 1E+02 0.0035 27.8 6.8 81 348-436 24-115 (309)
274 3iv7_A Alcohol dehydrogenase I 31.2 27 0.00092 32.7 2.9 71 4-80 28-98 (364)
275 2rjo_A Twin-arginine transloca 31.1 96 0.0033 27.9 6.8 78 14-94 6-88 (332)
276 3huu_A Transcription regulator 31.1 76 0.0026 28.2 6.0 84 8-95 17-107 (305)
277 3gv0_A Transcriptional regulat 31.0 88 0.003 27.5 6.4 77 14-94 9-89 (288)
278 1al3_A Cys regulon transcripti 30.8 1.6E+02 0.0056 26.2 8.3 85 317-426 92-176 (324)
279 1pc3_A Phosphate-binding prote 30.7 74 0.0025 29.4 5.9 69 349-426 43-114 (350)
280 3hcw_A Maltose operon transcri 30.4 73 0.0025 28.2 5.7 77 14-94 8-91 (295)
281 3kjx_A Transcriptional regulat 30.4 1.7E+02 0.0057 26.5 8.4 77 14-94 69-147 (344)
282 2h3h_A Sugar ABC transporter, 30.3 1.2E+02 0.0042 26.9 7.3 78 15-94 3-82 (313)
283 2fp4_A Succinyl-COA ligase [GD 29.9 1.9E+02 0.0064 26.1 8.3 73 15-91 154-233 (305)
284 3lft_A Uncharacterized protein 29.8 91 0.0031 27.6 6.3 65 14-79 3-71 (295)
285 3qk7_A Transcriptional regulat 29.2 1E+02 0.0035 27.2 6.5 77 14-95 7-89 (294)
286 1sg6_A Pentafunctional AROM po 29.2 1.4E+02 0.0049 28.0 7.7 85 7-93 30-130 (393)
287 3okf_A 3-dehydroquinate syntha 28.6 1.3E+02 0.0043 28.4 7.0 81 7-89 56-144 (390)
288 2hqb_A Transcriptional activat 28.5 1.1E+02 0.0038 27.1 6.6 63 14-79 6-72 (296)
289 2rgy_A Transcriptional regulat 28.4 1E+02 0.0035 27.0 6.3 77 14-94 9-90 (290)
290 3egc_A Putative ribose operon 28.4 52 0.0018 29.0 4.3 77 14-94 9-87 (291)
291 2ioy_A Periplasmic sugar-bindi 27.4 1.4E+02 0.0047 26.0 7.0 79 14-95 2-83 (283)
292 2qv7_A Diacylglycerol kinase D 27.3 3.5E+02 0.012 24.5 10.1 74 13-91 24-101 (337)
293 3d8u_A PURR transcriptional re 27.3 1.1E+02 0.0039 26.3 6.4 77 14-94 4-82 (275)
294 1di6_A MOGA, molybdenum cofact 27.2 1.2E+02 0.0041 25.3 6.0 64 15-80 5-76 (195)
295 3kke_A LACI family transcripti 27.1 1.1E+02 0.0038 27.1 6.3 78 12-92 14-93 (303)
296 1xmp_A PURE, phosphoribosylami 26.8 2.5E+02 0.0087 22.7 8.1 65 15-81 13-77 (170)
297 3dmy_A Protein FDRA; predicted 26.5 3.4E+02 0.012 26.2 9.8 75 15-93 114-197 (480)
298 1dbq_A Purine repressor; trans 26.5 1.7E+02 0.0059 25.3 7.5 64 14-80 8-73 (289)
299 1o1x_A Ribose-5-phosphate isom 26.4 2.5E+02 0.0084 22.4 8.4 65 16-80 13-80 (155)
300 1uuy_A CNX1, molybdopterin bio 26.4 1.1E+02 0.0037 24.7 5.5 65 14-80 6-81 (167)
301 2pbq_A Molybdenum cofactor bio 26.3 98 0.0034 25.3 5.3 63 15-80 7-78 (178)
302 3mw8_A Uroporphyrinogen-III sy 26.1 85 0.0029 26.9 5.2 71 14-90 121-191 (240)
303 2iks_A DNA-binding transcripti 26.1 84 0.0029 27.7 5.3 79 13-94 20-100 (293)
304 1vsq_C Mannose-specific phosph 25.9 1.9E+02 0.0066 23.3 6.8 78 3-88 20-97 (165)
305 3ph3_A Ribose-5-phosphate isom 25.9 2.6E+02 0.009 22.6 8.3 61 20-80 25-88 (169)
306 1ccw_A Protein (glutamate muta 25.8 2.3E+02 0.0078 21.8 10.2 84 15-105 5-92 (137)
307 3lhk_A Putative DNA binding pr 25.7 1E+02 0.0035 24.4 5.2 72 348-423 24-100 (154)
308 3hs3_A Ribose operon repressor 25.5 1.5E+02 0.0051 25.7 6.9 67 9-78 6-75 (277)
309 3lp6_A Phosphoribosylaminoimid 25.3 2.5E+02 0.0085 22.8 7.2 65 15-81 9-73 (174)
310 2x7x_A Sensor protein; transfe 25.3 1.9E+02 0.0065 25.8 7.7 78 14-94 7-87 (325)
311 4h1x_A PBP 2, phosphate-bindin 25.1 1.4E+02 0.0048 26.2 6.4 69 349-426 168-240 (265)
312 3bbl_A Regulatory protein of L 25.0 1.2E+02 0.0041 26.5 6.1 77 14-94 5-87 (287)
313 3he8_A Ribose-5-phosphate isom 24.9 2.6E+02 0.0088 22.1 8.3 60 21-80 6-68 (149)
314 3s5p_A Ribose 5-phosphate isom 24.4 2.8E+02 0.0096 22.4 8.3 62 19-80 25-89 (166)
315 3c3k_A Alanine racemase; struc 24.4 2.5E+02 0.0085 24.3 8.2 63 14-79 9-73 (285)
316 1u11_A PURE (N5-carboxyaminoim 24.1 3E+02 0.01 22.6 8.1 65 15-81 23-87 (182)
317 1nrz_A PTS system, sorbose-spe 23.6 2E+02 0.0068 23.2 6.5 77 3-87 17-93 (164)
318 2vk2_A YTFQ, ABC transporter p 23.6 1.5E+02 0.0052 26.1 6.6 78 14-94 3-83 (306)
319 2lk9_A Bone marrow stromal ant 23.3 98 0.0034 17.3 3.0 19 441-459 6-24 (35)
320 3h5o_A Transcriptional regulat 23.3 2.3E+02 0.0078 25.4 7.9 78 13-94 62-141 (339)
321 2q5c_A NTRC family transcripti 23.0 3.2E+02 0.011 22.5 8.0 53 15-76 96-148 (196)
322 3bij_A Uncharacterized protein 22.9 1.2E+02 0.0041 27.0 5.6 37 2-39 34-70 (285)
323 3lkv_A Uncharacterized conserv 22.8 2.1E+02 0.007 25.4 7.3 71 4-79 129-202 (302)
324 2hqb_A Transcriptional activat 22.7 3.5E+02 0.012 23.7 8.8 79 12-94 125-204 (296)
325 1fuk_A Eukaryotic initiation f 22.5 2.5E+02 0.0086 22.0 7.1 14 30-43 43-56 (165)
326 3clk_A Transcription regulator 22.4 1.1E+02 0.0039 26.7 5.5 78 14-94 9-88 (290)
327 1ble_A Fructose permease; phos 22.4 1.9E+02 0.0065 23.3 6.1 77 3-87 18-94 (163)
328 3cg1_A UPF0100 protein PF0080; 22.3 1.5E+02 0.0051 26.2 6.2 71 349-426 21-100 (296)
329 2i49_A Bicarbonate transporter 22.3 72 0.0025 30.5 4.2 89 316-425 34-136 (429)
330 3fcs_B Integrin beta-3; beta p 22.1 4.2E+02 0.014 27.0 10.0 86 2-92 224-349 (690)
331 2bon_A Lipid kinase; DAG kinas 22.0 3E+02 0.01 24.9 8.3 74 14-92 30-104 (332)
332 3lfj_A Manxb, phosphotransfera 22.0 1.8E+02 0.0063 24.0 6.0 78 3-88 38-115 (187)
333 2vvr_A Ribose-5-phosphate isom 22.0 3E+02 0.01 21.8 9.0 59 22-80 8-69 (149)
334 3bvp_A INT, TP901-1 integrase; 21.9 1.3E+02 0.0046 23.0 5.1 50 29-78 26-79 (138)
335 3eye_A PTS system N-acetylgala 21.9 2.1E+02 0.0071 23.2 6.2 77 3-88 22-99 (168)
336 1kq3_A Glycerol dehydrogenase; 21.7 25 0.00085 33.1 0.8 72 4-80 33-104 (376)
337 1jye_A Lactose operon represso 21.6 3E+02 0.01 24.8 8.3 64 14-79 62-127 (349)
338 2v25_A Major cell-binding fact 21.4 1.5E+02 0.005 25.0 5.9 41 349-397 161-201 (259)
339 3bvp_A INT, TP901-1 integrase; 21.4 1.1E+02 0.0038 23.5 4.5 74 348-424 27-109 (138)
340 1xah_A Sadhqs, 3-dehydroquinat 21.2 85 0.0029 29.0 4.4 79 6-90 26-112 (354)
341 1gud_A ALBP, D-allose-binding 21.2 2.4E+02 0.0082 24.5 7.4 80 14-94 2-84 (288)
342 3bil_A Probable LACI-family tr 21.1 1.5E+02 0.0051 27.0 6.1 76 15-94 68-145 (348)
343 4es6_A Uroporphyrinogen-III sy 21.0 88 0.003 27.1 4.2 71 14-90 134-204 (254)
344 4edp_A ABC transporter, substr 21.0 1.5E+02 0.0051 26.6 6.1 80 347-435 50-159 (351)
345 2qu7_A Putative transcriptiona 21.0 1.4E+02 0.0049 25.9 5.8 63 14-79 9-72 (288)
346 3k9c_A Transcriptional regulat 20.9 3.3E+02 0.011 23.5 8.3 75 12-92 11-87 (289)
347 1yx1_A Hypothetical protein PA 20.8 3.7E+02 0.013 22.9 8.5 73 4-77 28-104 (264)
348 2hsg_A Glucose-resistance amyl 20.8 1.5E+02 0.0052 26.6 6.0 77 14-94 61-139 (332)
349 3brs_A Periplasmic binding pro 20.8 86 0.0029 27.4 4.2 80 14-94 6-90 (289)
350 1i4n_A Indole-3-glycerol phosp 20.6 2.7E+02 0.0093 24.2 7.2 76 13-96 74-152 (251)
351 1byk_A Protein (trehalose oper 20.2 1.9E+02 0.0066 24.5 6.4 63 14-79 3-67 (255)
352 2o20_A Catabolite control prot 20.1 2.2E+02 0.0076 25.4 7.0 63 14-79 64-128 (332)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.8e-55 Score=470.02 Aligned_cols=418 Identities=17% Similarity=0.305 Sum_probs=335.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC--CChhHHHHHHHHhccCCceEEEEEeC
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+|++++++||||+||++|+ |+++|...++.|.+++++.|+||++.+.++.. .+..++..++++|++++++|||++++
T Consensus 110 ~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 188 (823)
T 3kg2_A 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCE 188 (823)
T ss_dssp HHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECC
Confidence 6899999999999999999 78899999999999999999999999887654 12457889999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCC
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTL 158 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~ 158 (481)
...+..++++|.++||..++|+||+++.+....+. ........|++++....+..+.+++|.+.|++.+.. ++.
T Consensus 189 ~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 263 (823)
T 3kg2_A 189 RDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263 (823)
T ss_dssp HHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTT
T ss_pred HHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCC
Confidence 99999999999999999899999999854333222 223344567889988888899999999999987642 233
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccc--cccCccHHHHHHHHhcccCceee
Q 011629 159 NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTG 236 (481)
Q Consensus 159 ~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~l~~v~f~g~sG 236 (481)
.....++.+++++||||+++|+||+++..+..+..... ....|... ..+.+|..|.++|++++|+|++|
T Consensus 264 ~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~---------~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG 334 (823)
T 3kg2_A 264 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG---------NAGDCLANPAVPWGQGVEIERALKQVQVEGLSG 334 (823)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS---------CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTE
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHhhccccccCC---------CCCCccCCCCCcccchHHHHHHHHhcccCCccc
Confidence 33334677899999999999999999886543321110 11123322 23556899999999999999999
Q ss_pred eEEEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcccCCccccCCCCCCCCCccccceeecCCCCCCCCCCccccCC
Q 011629 237 PIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNN 316 (481)
Q Consensus 237 ~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~s~~~~~~ 316 (481)
++.||++|++.+..|+|+++++++++.||.|++..++.... + .. ....
T Consensus 335 ~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~-----------------------~-------~~--~~~~ 382 (823)
T 3kg2_A 335 NIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTE-----------------------D-------DT--SGLE 382 (823)
T ss_dssp ECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECC-----------------------C-------CC--SSCC
T ss_pred CeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceecc-----------------------C-------cc--cccC
Confidence 99999999998889999999999999999999876532110 0 00 0234
Q ss_pred CceEEEeecCCCCCcCcEEec------CCCCeEEeeeHHHHHHHHHHCCCcccEEEEeC---CC-CCCCCCHHHHHHHHH
Q 011629 317 GRHLRIGVPSQVIYPEFVAQG------KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPF---GD-GHNSPKRFDLLRLVS 386 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~------~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~ 386 (481)
+++|+|++. ..+||.+.. ++++++.|||+||++++|+++|+++++...+. |. ...+++|++++++|.
T Consensus 383 ~~~l~v~~~---~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~ 459 (823)
T 3kg2_A 383 QKTVVVTTI---LESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 459 (823)
T ss_dssp CCCEEEEEC---CCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHH
T ss_pred CCEEEEEEe---cCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhc
Confidence 678999987 578888863 24789999999999999999998855555441 11 124578999999999
Q ss_pred cccccEEEeeeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcchhHHHHHHHHHHHHHHHHHhhhcccC
Q 011629 387 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLN 465 (481)
Q Consensus 387 ~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~~~~W~~~~~~~~~~~~~~~~~~~~~~ 465 (481)
+|++|++++++++|++|++.+|||.||+.++++++++++. ...+.+.|++||+..+|++++++++++++++|+++|+.+
T Consensus 460 ~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p 539 (823)
T 3kg2_A 460 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSP 539 (823)
T ss_dssp TTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC----
T ss_pred cccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999999999999999999887 457789999999999999999999999999999988754
Q ss_pred CCCC
Q 011629 466 DDFR 469 (481)
Q Consensus 466 ~~~~ 469 (481)
.+|+
T Consensus 540 ~~w~ 543 (823)
T 3kg2_A 540 YEWH 543 (823)
T ss_dssp ----
T ss_pred hhcc
Confidence 4553
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-36 Score=294.55 Aligned_cols=260 Identities=17% Similarity=0.264 Sum_probs=214.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+|+++|++||||+||++||++++++ ...+.+.+.+.+.|+||...+.++. ...++..++++++++++++||++++..
T Consensus 119 ~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~~~~~vIv~~~~~~ 195 (389)
T 4gpa_A 119 GALLSLLDHYEWNCFVFLYDTDRGY-SILQAIMEKAGQNGWHVSAICVENF--NDVSYRQLLEELDRRQEKKFVIDCEIE 195 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHHHHHHTTTCEEEEEECTTC--CHHHHHHHHHHHHHHTCCEEEEECCHH
T ss_pred HHHHHHHHHcCCcEEEEEEecchhh-HHHHHHHHHHHhcCceEEEEeecCC--cchhHHHHHHHhhccCCcEEEEEechh
Confidence 6899999999999999999776655 5678889999999999998876643 455899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhccCCCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGP 161 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 161 (481)
.+..++++|.++||..++++||+++++...... ........++.++....+..+.+++|.++|++.+........
T Consensus 196 ~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 270 (389)
T 4gpa_A 196 RLQNILEQIVSVGKHVKGYHYIIANLGFKDISL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSE 270 (389)
T ss_dssp HHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTT
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCccccchhh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999877655333 334455678889988888999999999999987754333333
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEEEc
Q 011629 162 IGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFT 241 (481)
Q Consensus 162 ~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~Fd 241 (481)
..+..+++++|||||++|+||+++..+........ ....+.|....+|.+|..|+++|++++|+|++|+|.||
T Consensus 271 ~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd 343 (389)
T 4gpa_A 271 TPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRG-------NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFD 343 (389)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTT-------CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC-------CccccccCCCcccchHHHHHHHHHhCceecCceeEEEC
Confidence 45677899999999999999999988755422111 11223355556677799999999999999999999999
Q ss_pred cCCCCCCCcEEEEEeecCceEEEEEeeCCCCCccc
Q 011629 242 SDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 276 (481)
Q Consensus 242 ~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~ 276 (481)
++|+|.+..|+|+|++.+++++||.|++..||.+.
T Consensus 344 ~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~~ 378 (389)
T 4gpa_A 344 HYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378 (389)
T ss_dssp TTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred CCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEEC
Confidence 99999878999999999999999999998876554
No 3
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=5.7e-35 Score=295.09 Aligned_cols=269 Identities=17% Similarity=0.254 Sum_probs=203.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeC
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~ 79 (481)
+||+++++||||+||++|++|++||+...+.|++++++.|+||++.+.++......++..++++|++ ++++|||+++.
T Consensus 186 ~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~ 265 (496)
T 3ks9_A 186 RAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCE 265 (496)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECC
T ss_pred HHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecC
Confidence 6899999999999999999999999999999999999999999999999765566789999999998 48999999999
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHH------------
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT------------ 147 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~------------ 147 (481)
..++..+++++.++|+. ..+.||.++.|....... ......++|+++|.++....++|++|+.
T Consensus 266 ~~~~~~l~~~~~~~g~~-~k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~ 340 (496)
T 3ks9_A 266 GMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPW 340 (496)
T ss_dssp HHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTT
T ss_pred hHHHHHHHHHHHHhCCC-CcEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHH
Confidence 98999999999999975 336899999886542211 1233568899999999999999999974
Q ss_pred ---HHhhhhc---------------cCCCCCCCCC----ChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccC
Q 011629 148 ---RWRHLTR---------------RNTLNGPIGL----NSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSR 205 (481)
Q Consensus 148 ---~~~~~~~---------------~~~~~~~~~~----~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~ 205 (481)
.|...|+ .|++++++.. .....++|+|||++|+|||+|+.+.....
T Consensus 341 l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~------------ 408 (496)
T 3ks9_A 341 FPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH------------ 408 (496)
T ss_dssp HHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC------------
T ss_pred HHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC------------
Confidence 4655442 2555555431 12245799999999999999986422210
Q ss_pred CCcccccccccCccHHHHHHHHhcccCceee-eEEEccCCCCCCCcEEEEEeec---C--ceEEEEEeeCCCCCcccCCc
Q 011629 206 GDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG---T--GSRRIGYWSNHSGLSVVPPE 279 (481)
Q Consensus 206 ~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG-~v~Fd~~Gd~~~~~y~I~~~~~---~--~~~~VG~~~~~~~l~~~~~~ 279 (481)
...|.....++ +++|+++||+++|.+.+| .|.||++||.. +.|+|+||+. + .+++||.|+.. .
T Consensus 409 -~~~c~~~~~~~-~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~~-~------- 477 (496)
T 3ks9_A 409 -VGLCDAMKPID-GSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHEG-V------- 477 (496)
T ss_dssp -SSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEETT-E-------
T ss_pred -CCCCcCCCCCC-HHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeCC-e-------
Confidence 11244333455 899999999999999999 89999999985 9999999983 2 57899999842 1
Q ss_pred cccCCCCCCCCCccccceeecCCCCCCCCCC
Q 011629 280 ALYKEPSNRSASSQHLYSAVWPGQTTQKPRG 310 (481)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~s 310 (481)
+.++.+.| |.++.+++|++
T Consensus 478 -----------l~i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 478 -----------LNIDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp -----------EEECTTTC------------
T ss_pred -----------EEEehhhc-ccCCCCCCCCC
Confidence 23445567 87777788864
No 4
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=292.05 Aligned_cols=260 Identities=18% Similarity=0.296 Sum_probs=204.5
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHH-HHhccCCceEEEEEeCc
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRILILHTYD 80 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l-~~i~~s~~~vIvl~~~~ 80 (481)
+||+++++||||+||++|++|++||+..++.|++++++.|+||++.+.++......++...+ +.|++++++|||++++.
T Consensus 174 ~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~ 253 (479)
T 3sm9_A 174 KAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRS 253 (479)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCH
T ss_pred HHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcCh
Confidence 68999999999999999999999999999999999999999999999998765556788888 77899999999999999
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHH-------------
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT------------- 147 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~------------- 147 (481)
.++..+++++.++|+. ++||.++.|....... ......++|+++|..+...+|+|++|+.
T Consensus 254 ~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~ 326 (479)
T 3sm9_A 254 DDSRELIAAASRANAS---FTWVASDGWGAQESII----KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWF 326 (479)
T ss_dssp HHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH----TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTH
T ss_pred HHHHHHHHHHHHhCCE---EEEEEechhhcCcccc----ccccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHH
Confidence 9999999999999875 8999999886532111 1123567899999999999999999975
Q ss_pred --HHhhhhc-----------cCCCCCCCC-----CChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcc
Q 011629 148 --RWRHLTR-----------RNTLNGPIG-----LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMR 209 (481)
Q Consensus 148 --~~~~~~~-----------~~~~~~~~~-----~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (481)
.|+..|+ .|++++++. ....++++|||||++|+|||+|+.+.... ....
T Consensus 327 ~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~-------------~~~~ 393 (479)
T 3sm9_A 327 RDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN-------------TTKL 393 (479)
T ss_dssp HHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT-------------CSSC
T ss_pred HHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC-------------CCcC
Confidence 4665543 366665543 12345789999999999999998732211 0112
Q ss_pred cccccccCccHHHH-HHHHhcccCce------ee-eEEEccCCCCCCCcEEEEEeec--C--ceEEEEEeeCCCCCcccC
Q 011629 210 FSSVSIFNGGKMLL-DNILQVNMTGV------TG-PIKFTSDRDLINPAYEVINVIG--T--GSRRIGYWSNHSGLSVVP 277 (481)
Q Consensus 210 ~~~~~~~~~~~~L~-~~l~~v~f~g~------sG-~v~Fd~~Gd~~~~~y~I~~~~~--~--~~~~VG~~~~~~~l~~~~ 277 (481)
|......+ +++|+ ++|++++|.+. +| +|.||++||+. +.|+|+||+. + .+++||.|+ ..
T Consensus 394 c~~~~~~~-~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~--~~----- 464 (479)
T 3sm9_A 394 CDAMKILD-GKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA--ET----- 464 (479)
T ss_dssp CHHHHSCC-HHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES--SS-----
T ss_pred CCCCCCcC-hHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe--ce-----
Confidence 43333344 89999 99999999998 67 89999999995 9999999983 2 578999997 22
Q ss_pred CccccCCCCCCCCCccccceeecCCC
Q 011629 278 PEALYKEPSNRSASSQHLYSAVWPGQ 303 (481)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~W~~~ 303 (481)
+.++.+.|.|+++
T Consensus 465 -------------l~i~~~~I~W~~~ 477 (479)
T 3sm9_A 465 -------------LSLDVNSIHWSRN 477 (479)
T ss_dssp -------------EEECGGGCCCC--
T ss_pred -------------EEEecceeEeCCC
Confidence 2355678999875
No 5
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=9.3e-34 Score=278.15 Aligned_cols=258 Identities=16% Similarity=0.251 Sum_probs=208.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+|+++++++|||+||++|+ |++||...++.|.+.+++.|+||++.+.++.. ...|+..++++|+++++++||++++..
T Consensus 119 ~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~ik~~~~~vii~~~~~~ 196 (389)
T 3o21_A 119 GAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIK-DVQEFRRIIEEMDRRQEKRYLIDCEVE 196 (389)
T ss_dssp HHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCC-CTHHHHHHHHHHHTTTCCEEEEESCHH
T ss_pred HHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCC-CcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 6899999999999999999 88999999999999999999999998877532 334799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhccC-CCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNG 160 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~ 160 (481)
.+..++++|.++||..++|+||+++.|....+. ........|++++....+..|.+++|++.|++.++.+ ++.+
T Consensus 197 ~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~ 271 (389)
T 3o21_A 197 RINTILEQVVILGKHSRGYHYMLANLGFTDILL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAK 271 (389)
T ss_dssp HHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSS
T ss_pred HHHHHHHHHHHcCcccCCeEEEEccCCcccccH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCC
Confidence 999999999999999889999999866444332 1233445678888888888899999999999877532 2222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCccc--ccccccCccHHHHHHHHhcccCceeeeE
Q 011629 161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPI 238 (481)
Q Consensus 161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~l~~v~f~g~sG~v 238 (481)
...+..+++++||||+++|+|++++..+....... .....| ....+|.+|..|+++|++++|+|++|++
T Consensus 272 ~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i 342 (389)
T 3o21_A 272 NAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNI 342 (389)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEE
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhCcccccC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceee
Confidence 22356789999999999999999987643322110 001134 2234566689999999999999999999
Q ss_pred EEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcc
Q 011629 239 KFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSV 275 (481)
Q Consensus 239 ~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~ 275 (481)
.||++|++.+..|+|+++..+++++||.|++..|++.
T Consensus 343 ~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 343 QFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVP 379 (389)
T ss_dssp CBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEC
T ss_pred eeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCccc
Confidence 9999999987899999999889999999999877643
No 6
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2e-33 Score=288.44 Aligned_cols=268 Identities=18% Similarity=0.293 Sum_probs=211.5
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhc-cCCceEEEEEeCc
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTYD 80 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~-~s~~~vIvl~~~~ 80 (481)
+||+++++||||+||++|++|++||....+.|++++++.|+||++.+.++......++..++++|+ +++++|||+++..
T Consensus 175 ~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~ 254 (555)
T 2e4u_A 175 KAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRS 254 (555)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCH
T ss_pred HHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCH
Confidence 689999999999999999999999999999999999999999999999986445567888999996 4799999999999
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHH-------------
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT------------- 147 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~------------- 147 (481)
.++..+++++.++|+ +++||.++.|....... ......++|++++..+...+++|++|+.
T Consensus 255 ~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~ 327 (555)
T 2e4u_A 255 DDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWF 327 (555)
T ss_dssp HHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTH
T ss_pred HHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHH
Confidence 999999999999886 79999999886542221 1123567899999988888888887764
Q ss_pred --HHhhhhc-----------cCCCCCCCC-----CChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcc
Q 011629 148 --RWRHLTR-----------RNTLNGPIG-----LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMR 209 (481)
Q Consensus 148 --~~~~~~~-----------~~~~~~~~~-----~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (481)
.|+..++ .|++++++. +..+++++|||||++|+|||++..+..... ...
T Consensus 328 ~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~-------------~~~ 394 (555)
T 2e4u_A 328 RDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT-------------TKL 394 (555)
T ss_dssp HHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC-------------SSC
T ss_pred HHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC-------------Ccc
Confidence 4665543 255555442 345789999999999999999975321100 012
Q ss_pred cccccccCccHHHHH-HHHhcccC------ceeee-EEEccCCCCCCCcEEEEEeec--C--ceEEEEEeeCCCCCcccC
Q 011629 210 FSSVSIFNGGKMLLD-NILQVNMT------GVTGP-IKFTSDRDLINPAYEVINVIG--T--GSRRIGYWSNHSGLSVVP 277 (481)
Q Consensus 210 ~~~~~~~~~~~~L~~-~l~~v~f~------g~sG~-v~Fd~~Gd~~~~~y~I~~~~~--~--~~~~VG~~~~~~~l~~~~ 277 (481)
|......+ +++|++ +|++++|. |.+|. |.||++|++. ..|+|+|++. + .+++||.|++ .|
T Consensus 395 ~~~~~~~~-~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l---- 466 (555)
T 2e4u_A 395 CDAMKILD-GKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TL---- 466 (555)
T ss_dssp CGGGTSCC-HHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SE----
T ss_pred ccccCCCC-cccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eE----
Confidence 32222234 889999 99999999 99995 9999999986 9999999963 3 5899999984 22
Q ss_pred CccccCCCCCCCCCccccceeecCCCCCCCCCCccc
Q 011629 278 PEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVF 313 (481)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~s~~~ 313 (481)
.++.+.|.|++ .++|+|+|-
T Consensus 467 --------------~i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 467 --------------SLDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp --------------ECCGGGCCCTT--SSCCCCCSS
T ss_pred --------------EEeccccccCC--CCCcceeeC
Confidence 24556899987 689999974
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=2.1e-32 Score=267.53 Aligned_cols=258 Identities=19% Similarity=0.279 Sum_probs=190.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC--CChhHHHHHHHHhccCCceEEEEEeC
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+|+++++++|||+||++|+ |++||....+.|.+.+++.|+||.....++.. ....++..++++|+++++++||+++.
T Consensus 110 ~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 188 (376)
T 3hsy_A 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCE 188 (376)
T ss_dssp HHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECC
Confidence 6899999999999999999 89999999999999999999999988766532 12457999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCC
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTL 158 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~ 158 (481)
...+..+++++.++||..++|+||++++.....+. ........+++++....+..|.+++|.+.|++.+.. +++
T Consensus 189 ~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~ 263 (376)
T 3hsy_A 189 RDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263 (376)
T ss_dssp HHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTT
T ss_pred HHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCC
Confidence 99999999999999998889999999743222111 112222345788877777889999999999987642 222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCccc--ccccccCccHHHHHHHHhcccCceee
Q 011629 159 NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTG 236 (481)
Q Consensus 159 ~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~l~~v~f~g~sG 236 (481)
.+...+..+++++||||+++|+|++++..+....... +....| .+..+|.+|..|.++|++++|+|++|
T Consensus 264 ~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG 334 (376)
T 3hsy_A 264 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG 334 (376)
T ss_dssp CSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC---------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTE
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccC---------CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCcc
Confidence 2222467789999999999999999987653321110 011134 33344556889999999999999999
Q ss_pred eEEEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCc
Q 011629 237 PIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 274 (481)
Q Consensus 237 ~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~ 274 (481)
+|+||++|++.+..|+|+++..++++.||.|++..||.
T Consensus 335 ~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 335 NIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp EECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred ceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCce
Confidence 99999999988899999999988999999999987654
No 8
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=4.2e-34 Score=288.19 Aligned_cols=247 Identities=21% Similarity=0.328 Sum_probs=169.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHh-cCCEEEEEEecCCCCChh--HHHHHHHHhc-cCCceEEEEE
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRN--QIIDTLLTVS-SMMSRILILH 77 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~--~~~~~l~~i~-~s~~~vIvl~ 77 (481)
+||+++++||||+||++|++|++||+...+.|++++.+ .|+||++.+.++...... ++..++++|+ +++++|||++
T Consensus 175 ~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~ 254 (481)
T 3mq4_A 175 QAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIF 254 (481)
T ss_dssp HHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEEC
T ss_pred HHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999999999999999999998885 799999998887553333 6778889998 5899999999
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHH----------
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT---------- 147 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~---------- 147 (481)
+...++..+++++.++|+.. +++||.++.|....... ......++|+++|.++....|+|++|+.
T Consensus 255 ~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d 329 (481)
T 3mq4_A 255 ANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRN 329 (481)
T ss_dssp CCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTC
T ss_pred EChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCC
Confidence 99999999999999998753 48999999886543221 2234678999999999999999999974
Q ss_pred -----HHhhhhc---------------cCCCCCCCC------CChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccc
Q 011629 148 -----RWRHLTR---------------RNTLNGPIG------LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLS 201 (481)
Q Consensus 148 -----~~~~~~~---------------~~~~~~~~~------~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~ 201 (481)
.|+..|+ .|++++++. ....++++|||||++|+|||+|+.+.....
T Consensus 330 ~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~-------- 401 (481)
T 3mq4_A 330 VWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY-------- 401 (481)
T ss_dssp TTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC--------
Confidence 4654442 266665543 124567899999999999999986422110
Q ss_pred cccCCCcccccccccCccHHHHHHHHhcccCceee-eEEEccCCCCCCCcEEEEEeec---C--ceEEEEEee
Q 011629 202 ELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG---T--GSRRIGYWS 268 (481)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG-~v~Fd~~Gd~~~~~y~I~~~~~---~--~~~~VG~~~ 268 (481)
...|.....++ +++|+++||+++|.+.+| +|.||++||+. +.|+|+||+. + .+++||.|+
T Consensus 402 -----~~~c~~~~~~~-~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 402 -----RGVCPEMEQAG-GKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp -------CCHHHHTSC-HHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred -----CCCCCCCCCcC-HHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 11344333455 899999999999999999 89999999995 9999999983 2 568999998
No 9
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-31 Score=261.82 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=204.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+|+++++++|||+||++|+ |++||....+.|++.+++.|+||+..+..+. ...++..++++|+++++++|+++++..
T Consensus 117 ~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~vii~~~~~~ 193 (384)
T 3saj_A 117 EALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTT--TEEGYRMLFQDLEKKKERLVVVDCESE 193 (384)
T ss_dssp HHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGGC--CHHHHHHTTTTCCSCSEEEEEEECCGG
T ss_pred HHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcCceEEEEEeccC--CchhHHHHHHHHhccCCcEEEEEcCHH
Confidence 6899999999999999999 7799999999999999999999998875432 445799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNG 160 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~ 160 (481)
.+..++++|.++||..++|+||+++.+....+. ........|++++.+..+..+.+++|.++|++.++. .++..
T Consensus 194 ~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~ 268 (384)
T 3saj_A 194 RLNAILGQIVKLEKNGIGYHYILANLGFMDIDL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVD 268 (384)
T ss_dssp GHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHcCCCCCCcEEEEECCCcccccH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCC
Confidence 999999999999998888999999754322211 122334456888888888889999999999987753 22222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccc--cccCccHHHHHHHHhcccCceeeeE
Q 011629 161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPI 238 (481)
Q Consensus 161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~l~~v~f~g~sG~v 238 (481)
...++.+++++||||+++++|++++.......... .....|... ..|.+|..|.++|++++|+|++|++
T Consensus 269 ~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i 339 (384)
T 3saj_A 269 WKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNV 339 (384)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEE
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhccceecC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceee
Confidence 22346689999999999999999987643221110 111234432 3355699999999999999999999
Q ss_pred EEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcc
Q 011629 239 KFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSV 275 (481)
Q Consensus 239 ~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~ 275 (481)
+||++|++.+..|+|++++.+++.+||.|++..++.+
T Consensus 340 ~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 340 QFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp CBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EeCCCCCcccceEEEEEeccCCcceeEEEcCCCCccc
Confidence 9999999888899999999999999999998776544
No 10
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.97 E-value=4.3e-31 Score=256.03 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=170.6
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhc--C--CEEEEEEecCCCCChhHHHHHH-HHhccCCceEEEE
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--R--CRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRILIL 76 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~--g--i~v~~~~~~~~~~~~~~~~~~l-~~i~~s~~~vIvl 76 (481)
+||++|++||||+||++||+|+ .+.+.|.+.+++. | +|+++...++......++...+ ++|++++++|||+
T Consensus 125 ~ai~~ll~~fgW~~V~iI~~d~----~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv 200 (364)
T 3qel_B 125 SVMLNIMEEYDWYIFSIVTTYF----PGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILL 200 (364)
T ss_dssp HHHHHHHHHTTCCEEEEEEESC----TTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEeCC----ccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEE
Confidence 6899999999999999999874 3456666666655 5 5999887776543334566778 6899999999999
Q ss_pred EeCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhccC
Q 011629 77 HTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN 156 (481)
Q Consensus 77 ~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~ 156 (481)
+++.+.+..++++|.++||+.++|+||+++.+....+.. + .....|++++++.. |++
T Consensus 201 ~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~----~--~~~~~g~~~~~~~~------------W~~----- 257 (364)
T 3qel_B 201 YCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTV----P--SEFPTGLISVSYDE------------WDY----- 257 (364)
T ss_dssp ESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCC----C--TTSCTTCEECCBCT------------TTS-----
T ss_pred EcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCcccc----c--ccCCCceEEEeecc------------chh-----
Confidence 999999999999999999999999999998765443321 1 23457888876643 331
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCccccccc--ccCccHHHHHHHHhcccCce
Q 011629 157 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVS--IFNGGKMLLDNILQVNMTGV 234 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~l~~v~f~g~ 234 (481)
...+++||||+++|+|++++..+....+. ...+|.... .|..|..|+++|++++|+|.
T Consensus 258 ---------~~~~~~yDaV~~~A~A~~~~~~~~~~i~~-----------~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl 317 (364)
T 3qel_B 258 ---------GLPARVRDGIAIITTAASDMLSEHSFIPE-----------PKSSCYNTHEKRIYQSNMLNRYLINVTFEGR 317 (364)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTTTSCCCC-----------CCSCSTTTTTGGGGCCSTTHHHHTCCEETTE
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhccCCCCC-----------CCCCCCCCCCCccCCHHHHHHHHhhceEeCc
Confidence 14578999999999999998765322211 122454432 46679999999999999998
Q ss_pred eeeEEEccCCCCCCCcEEEEEee-cCceEEEEEeeC
Q 011629 235 TGPIKFTSDRDLINPAYEVINVI-GTGSRRIGYWSN 269 (481)
Q Consensus 235 sG~v~Fd~~Gd~~~~~y~I~~~~-~~~~~~VG~~~~ 269 (481)
++.||++|++.+..|+|+|++ ..++++||.|+.
T Consensus 318 --~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~ 351 (364)
T 3qel_B 318 --DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD 351 (364)
T ss_dssp --ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS
T ss_pred --eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC
Confidence 899999999988999999998 568999999984
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.97 E-value=2.7e-30 Score=253.41 Aligned_cols=236 Identities=22% Similarity=0.354 Sum_probs=184.3
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCC-----------EEEEE-------EecCC-CCChhHHHHH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRC-----------RLSHK-------VPLSP-KGSRNQIIDT 62 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi-----------~v~~~-------~~~~~-~~~~~~~~~~ 62 (481)
+|++++++||||+||++|++|++||....+.|++++++.|+ ||++. +.++. .....++..+
T Consensus 128 ~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~ 207 (384)
T 3qek_A 128 LVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTAL 207 (384)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHH
T ss_pred HHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHH
Confidence 68999999999999999999999999999999999999987 44443 22221 1123478899
Q ss_pred HHHhccCCceEEEEEeCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhH
Q 011629 63 LLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEK 142 (481)
Q Consensus 63 l~~i~~s~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 142 (481)
+++|++++++|||++++...+..++++|.++||.+.+++||+++.|... ........|+++++......
T Consensus 208 l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~--- 276 (384)
T 3qek_A 208 LLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN--- 276 (384)
T ss_dssp HHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC---
T ss_pred HHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc---
Confidence 9999999999999999999999999999999998888999999987532 22345678999998754322
Q ss_pred HHHHHHHhhhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccc-cccccCccHH
Q 011629 143 RKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFS-SVSIFNGGKM 221 (481)
Q Consensus 143 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 221 (481)
.++++|||||++|+|||+++.+..... ....|. ...+|..+..
T Consensus 277 ------------------------~~~~~YdAV~~~a~Al~~~~~~~~~~~------------~~~~c~~~~~~~~~~~~ 320 (384)
T 3qek_A 277 ------------------------ESAHISDAVAVVAQAIHELFEMENITD------------PPRGCVGNTNIWKTGPL 320 (384)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHTSSSCCC------------CCSCCTTCCCCCTTHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHHHHHHhccCCCC------------CCCccccCCCccccHHH
Confidence 368899999999999999986542110 011232 2345666888
Q ss_pred HHHHHHhccc-CceeeeEEEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcccCCccccCCCCCCCCCccccceeec
Q 011629 222 LLDNILQVNM-TGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVW 300 (481)
Q Consensus 222 L~~~l~~v~f-~g~sG~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W 300 (481)
|.+++++++| .|++|++.||++|++.+..|+|+|++.+++++||.|+... +.++.+.|.|
T Consensus 321 l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~-------------------l~i~~~~i~W 381 (384)
T 3qek_A 321 FKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGSY-------------------IIQNDRKIIW 381 (384)
T ss_dssp HHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEEEEECSSS-------------------EEECSSCCCC
T ss_pred HHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEEEEEeCCe-------------------EeeccceeeC
Confidence 9999999998 9999999999999986699999999999999999998431 2345568999
Q ss_pred CCC
Q 011629 301 PGQ 303 (481)
Q Consensus 301 ~~~ 303 (481)
+++
T Consensus 382 ~~~ 384 (384)
T 3qek_A 382 PGG 384 (384)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.97 E-value=8.9e-30 Score=254.48 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=187.6
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccc---hHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEe
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRN---GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 78 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~ 78 (481)
+|++++++||||+||++|++|++||+. ..+.|++++++.|+||++.+.++.... ++..++++|+ ++++|||+++
T Consensus 143 ~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~--d~~~~l~~i~-~~~~vii~~~ 219 (441)
T 1jdp_A 143 EMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDL--DLEDIVRNIQ-ASERVVIMCA 219 (441)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCC--CHHHHHHHHH-HHCSEEEEES
T ss_pred HHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCccc--CHHHHHHHhh-cCCcEEEEec
Confidence 589999999999999999999999999 999999999999999999877754333 6888999999 8999999999
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEEec----------cccccccCCccccccccccceeeEEEeeecCCchhHHHHHHH
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIVTD----------WLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR 148 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~ 148 (481)
+..++..+++++.++||..+.++||.++ .|...... .........++.++.......|.+++|.+.
T Consensus 220 ~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~ 295 (441)
T 1jdp_A 220 SSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKH----DFEAKQAYSSLQTVTLLRTVKPEFEKFSME 295 (441)
T ss_dssp CHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTT----HHHHHHHGGGEEEEEECCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCCcc----cHHHHHHHHhheEEeecCCCCchHHHHHHH
Confidence 9999999999999999987789999988 34221100 010112234455566666778999999999
Q ss_pred HhhhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHh
Q 011629 149 WRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQ 228 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 228 (481)
|++.+..........+..+++++|||||++|+|||++..+... +.++.+|+++|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~ 351 (441)
T 1jdp_A 296 VKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWN 351 (441)
T ss_dssp HHHHHHTTTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSS
T ss_pred HHHHHhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhC
Confidence 8876321100011123557899999999999999998754210 1238899999999
Q ss_pred cccCceeeeEEEccCCCCCCCcEEEEEeec---CceEEEEEeeCCC
Q 011629 229 VNMTGVTGPIKFTSDRDLINPAYEVINVIG---TGSRRIGYWSNHS 271 (481)
Q Consensus 229 v~f~g~sG~v~Fd~~Gd~~~~~y~I~~~~~---~~~~~VG~~~~~~ 271 (481)
++|.|++|+|.||++||+. ..|+|++++. +.++.||.|++..
T Consensus 352 ~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~~VG~~~~~~ 396 (441)
T 1jdp_A 352 RTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEVIGDYFGKE 396 (441)
T ss_dssp EEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEEEEEEETTT
T ss_pred CeeECCccceEECCCCCcc-ccEEEEecccCCCCceEEEEEEcCCC
Confidence 9999999999999999986 9999999973 5689999999764
No 13
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.97 E-value=7.7e-30 Score=250.99 Aligned_cols=253 Identities=18% Similarity=0.226 Sum_probs=195.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+|+++++++|||+||++|++|++||....+.+ +.+.+.|+||.+.. ++ . ..|+..++++|+++++++|++++...
T Consensus 128 ~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~-~--~~d~~~~l~~i~~~~~~vii~~~~~~ 202 (393)
T 3om0_A 128 LAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETLSVRM-LD-D--SRDPTPLLKEIRDDKVSTIIIDANAS 202 (393)
T ss_dssp HHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHH
T ss_pred HHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-cC-C--CCCHHHHHHHHHhcCCeEEEEECCHH
Confidence 58999999999999999999999987654444 56788999998764 43 2 23688999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNG 160 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~ 160 (481)
.+..++++|.++||..++|+||++++.....+. ........|++++....+..+.+++|.+.|++.+.. |...+
T Consensus 203 ~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l-----~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 277 (393)
T 3om0_A 203 ISHLVLRKASELGMTSAFYKYILTTMDFPILHL-----DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEAST 277 (393)
T ss_dssp HHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCC-----TTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHcCcccCCeEEEEecccccccch-----hhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCC
Confidence 999999999999998888999998865443322 112234567888887777788888898887776642 21111
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEEE
Q 011629 161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKF 240 (481)
Q Consensus 161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~F 240 (481)
...+..+++++||||+++|+|++++...... ......|.....+.++..|.++|++++|+|++|++.|
T Consensus 278 ~~~p~~~a~~~YDAv~~la~Al~~~~~~~~~------------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~f 345 (393)
T 3om0_A 278 YPGPALSAALMFDAVHVVVSAVRELNRSQEI------------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEF 345 (393)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHTTTSCC------------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECB
T ss_pred CCCCchHHHHHHhHHHHHHHHHHHHhhcccC------------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEe
Confidence 1235668999999999999999988542111 0112246555556669999999999999999999999
Q ss_pred ccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCccc
Q 011629 241 TSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 276 (481)
Q Consensus 241 d~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~ 276 (481)
|++|++.+..|+|++++.++++.||+|++..++.++
T Consensus 346 d~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 346 NSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp CTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred CCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 999999779999999999899999999998776544
No 14
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.97 E-value=1.4e-29 Score=252.59 Aligned_cols=264 Identities=17% Similarity=0.284 Sum_probs=202.7
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++++++|||++|++|++|++||....+.|++.+++.|+||+..+.++. ++..++++|+++++++|++++...
T Consensus 143 ~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----d~~~~l~~i~~~~~~vii~~~~~~ 217 (433)
T 4f11_A 143 PAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSN-----DPCTSVKKLKGNDVRIILGQFDQN 217 (433)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESS-----CCHHHHHHHHHTTCCEEEEECCHH
T ss_pred HHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCc-----CHHHHHHHHhhCCCeEEEEeCcHH
Confidence 589999999999999999999999999999999999999999999988863 467889999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEecccccccc--------CCccccccccccceeeEEEeeecCCc--------hhHHHH
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILD--------TDSQLHSEKMDDIQGVLTLRMYTQSS--------EEKRKF 145 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~--------~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~f 145 (481)
++..++++|.++||...+++||.++.....+. ...+......+.++|++++....... +..++|
T Consensus 218 ~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f 297 (433)
T 4f11_A 218 MAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQY 297 (433)
T ss_dssp HHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHH
Confidence 99999999999999888899999987222111 11112233456788999987654321 336788
Q ss_pred HHHHhhhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCccccc--ccccCccHHHH
Q 011629 146 VTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSS--VSIFNGGKMLL 223 (481)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~ 223 (481)
.+.|++... ...++.+++++||||+++|+||+++..+.... ..+..|.. ...+.++..|+
T Consensus 298 ~~~y~~~~~------~~~~~~~a~~~YDAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~ 359 (433)
T 4f11_A 298 EREYNNKRS------GVGPSKFHGYAYDGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIIL 359 (433)
T ss_dssp HHHHHHHHT------TSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHH
T ss_pred HHHHHHhcC------CCCcccchhhHHHHHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHH
Confidence 888887621 12345678999999999999999987542110 00001111 11122478999
Q ss_pred HHHHhcccCceeeeEEEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcccCCccccCCCCCCCCCccccceeecCCC
Q 011629 224 DNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQ 303 (481)
Q Consensus 224 ~~l~~v~f~g~sG~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~ 303 (481)
++|++++|.|++|+|.| ++|++. ..|+|++++.+++++||.|++... .+.++.+.|.|+++
T Consensus 360 ~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~I~~~~~g~~~~VG~~~~~~~-----------------~l~~~~~~i~W~~~ 420 (433)
T 4f11_A 360 NAMNETNFFGVTGQVVF-RNGERM-GTIKFTQFQDSREVKVGEYNAVAD-----------------TLEIINDTIRFQGS 420 (433)
T ss_dssp HHHHTCEEEETTEEEEE-ETTEEE-CEEEEEEEETTEEEEEEEEETTTT-----------------EEEECTTTCCCSSS
T ss_pred HHHHhcEEEccceEEEE-ecCcee-eeEEEEEEECCceEEEEEEECCCC-----------------eEEEeCCceECCCC
Confidence 99999999999999999 899997 999999999999999999986421 12234457999987
Q ss_pred CCCCCC
Q 011629 304 TTQKPR 309 (481)
Q Consensus 304 ~~~~P~ 309 (481)
. +|.
T Consensus 421 ~--~P~ 424 (433)
T 4f11_A 421 E--PPK 424 (433)
T ss_dssp S--CCC
T ss_pred C--CCC
Confidence 5 454
No 15
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.96 E-value=3.7e-29 Score=249.58 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=201.1
Q ss_pred hHhHHHHHHcCCcEEEEE------EEeCCcccchHHHHHHHHHh-cCCEEEEEEecCCCCChhHHHHHHHHhccCCceEE
Q 011629 2 AAIADIVDYFGWRNVIAL------YVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRIL 74 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii------~~dd~~g~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vI 74 (481)
+|+++++++|||+||++| ++|+++| ..++.+.+++.+ .|+||+..+.++. +..++..++++|++ +++||
T Consensus 135 ~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~-~~~vi 210 (435)
T 1dp4_A 135 DFVTALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEG--DPDHYPKLLRAVRR-KGRVI 210 (435)
T ss_dssp HHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT--CGGGHHHHHHHHHH-HCSEE
T ss_pred HHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecC--chhhHHHHHHHHHh-hCceE
Confidence 589999999999999999 7777788 677888889988 9999998886642 34578999999998 89999
Q ss_pred EEEeCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccC-------Ccc-----ccccccccceeeEEEeeecCCchhH
Q 011629 75 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT-------DSQ-----LHSEKMDDIQGVLTLRMYTQSSEEK 142 (481)
Q Consensus 75 vl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~-------~~~-----~~~~~~~~~~g~l~~~~~~~~~~~~ 142 (481)
|+++....+..++++|.++|+..++++||.++.|...... ... ..+.+.+...|++.+.+..+..+.+
T Consensus 211 v~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (435)
T 1dp4_A 211 YICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEY 290 (435)
T ss_dssp EEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHH
T ss_pred EEecChHHHHHHHHHHHHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhH
Confidence 9999999999999999999997777999999877543210 000 0012334567888877766677888
Q ss_pred HHHHHHHhhhhc---cCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCcc
Q 011629 143 RKFVTRWRHLTR---RNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGG 219 (481)
Q Consensus 143 ~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (481)
++|.+.|++.+. .|+..+. .++.+++++||||+++|+||++++.+... .. ++
T Consensus 291 ~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ydav~~~a~Al~~~~~~~~~-----------------------~~-~~ 345 (435)
T 1dp4_A 291 LEFLKQLKLLADKKFNFTVEDG-LKNIIPASFHDGLLLYVQAVTETLAQGGT-----------------------VT-DG 345 (435)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCS-GGGHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------TT-CH
T ss_pred HHHHHHHHHHhcCCCCcccccc-hhhHHHHHHHHHHHHHHHHHHHHHHcCCC-----------------------CC-CH
Confidence 899888876543 2433221 24568899999999999999998754211 02 27
Q ss_pred HHHHHHHHhcccCceeeeEEEccCCCCCCCcEEEEEe--ecCceEEEEEeeCCCCCcccCCccccCCCCCCCCCcc-ccc
Q 011629 220 KMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV--IGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQ-HLY 296 (481)
Q Consensus 220 ~~L~~~l~~v~f~g~sG~v~Fd~~Gd~~~~~y~I~~~--~~~~~~~VG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 296 (481)
..|+++|++++|.|++|++.||++|++. ..|+|+++ ..+.++.||.|++..+ . ..+ +.+
T Consensus 346 ~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~-~----------------l~~~~~~ 407 (435)
T 1dp4_A 346 ENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQ-E----------------LMAVSEH 407 (435)
T ss_dssp HHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTTTCCEEEEEEECTTTC-C----------------EEESTTC
T ss_pred HHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecCCCCcEEEEEEecCCCc-e----------------EEEcCCc
Confidence 8999999999999999999999999996 89999999 4567999999987542 0 112 446
Q ss_pred eeecCCCCCCCCCCc
Q 011629 297 SAVWPGQTTQKPRGW 311 (481)
Q Consensus 297 ~i~W~~~~~~~P~s~ 311 (481)
.|.|+++ ++|++.
T Consensus 408 ~i~W~~~--~~P~~~ 420 (435)
T 1dp4_A 408 KLYWPLG--YPPPDV 420 (435)
T ss_dssp CCCCTTS--SCCCSS
T ss_pred eeeCCCC--CCCCCC
Confidence 7999976 677654
No 16
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.96 E-value=1.6e-28 Score=241.81 Aligned_cols=251 Identities=19% Similarity=0.263 Sum_probs=197.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++++++|||+||++|+ |++||....+.+++.+++.|+||+... ++.. ..++..++++|+++++++|++++...
T Consensus 127 ~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~ 202 (395)
T 3h6g_A 127 RAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHE 202 (395)
T ss_dssp HHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHH
T ss_pred HHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHH
Confidence 5899999999999999998 778999999999999999999999875 7654 45899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCCC-
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLN- 159 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~- 159 (481)
++..++++|.++||..+.|+||+++......+. ......-.++.++.......+.+++|.+.|++.+.. .+..
T Consensus 203 ~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~ 277 (395)
T 3h6g_A 203 MAAGILKQALAMGMMTEYYHYIFTTLDLFALDV-----EPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPD 277 (395)
T ss_dssp HHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCC-----TTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCS
T ss_pred HHHHHHHHHHHccccCCceEEEEecCceeEech-----HHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccC
Confidence 999999999999999999999998643222121 111111122567776677788999999999875521 1111
Q ss_pred ---CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceee
Q 011629 160 ---GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG 236 (481)
Q Consensus 160 ---~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG 236 (481)
....++.+++.+||||++++.|++++..... ....|.....+.++..|.++|++++|.|++|
T Consensus 278 ~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~---------------~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG 342 (395)
T 3h6g_A 278 SGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV---------------SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTG 342 (395)
T ss_dssp SCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC---------------CCCCTTSCCCCTTHHHHHHHHHHCEEEETTE
T ss_pred CCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCC---------------cCCCCCCCCcCcccHHHHHHHhcCCCcCcce
Confidence 1112456899999999999999998643211 1224555556777999999999999999999
Q ss_pred eEEEcc-CCCCCCCcEEEEEeecCceEEEEEeeCCCCCccc
Q 011629 237 PIKFTS-DRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 276 (481)
Q Consensus 237 ~v~Fd~-~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~ 276 (481)
++.||+ +|++.+..|+|++++.++++.||.|++..|+.+.
T Consensus 343 ~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~ 383 (395)
T 3h6g_A 343 RITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMT 383 (395)
T ss_dssp EEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECCC
T ss_pred eeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCcccc
Confidence 999998 9999877999999999999999999998776554
No 17
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.83 E-value=1.9e-19 Score=174.94 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=176.4
Q ss_pred hHhHHHH-HHcCCcEEEEEEE-eCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 2 AAIADIV-DYFGWRNVIALYV-DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll-~~fgW~~V~ii~~-dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+++++.+ +++||++|++|+. +++||....+.+++.+++.|+++.... ++.... ++...++++++.++++|++.+.
T Consensus 137 ~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~~--d~~~~~~~l~~~~~d~v~~~~~ 213 (366)
T 3td9_A 137 AAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSGDQ--DFSAQLSVAMSFNPDAIYITGY 213 (366)
T ss_dssp HHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTCC--CCHHHHHHHHHTCCSEEEECSC
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCCc--cHHHHHHHHHhcCCCEEEEccc
Confidence 4667777 6789999999987 678999899999999999999998887 765433 6778899999999999999899
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCC---chhHHHHHHHHhhhhccC
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQS---SEEKRKFVTRWRHLTRRN 156 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~~~~~~f~~~~~~~~~~~ 156 (481)
...+..+++++.+.|+. ..|+..+.+...... ........|++......+. .+..++|.+.|++.+..
T Consensus 214 ~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~- 284 (366)
T 3td9_A 214 YPEIALISRQARQLGFT---GYILAGDGADAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK- 284 (366)
T ss_dssp HHHHHHHHHHHHHTTCC---SEEEECGGGCSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHHHcCCC---ceEEeeCCcCCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC-
Confidence 89999999999999875 357777655432100 1122455676666543322 67889999999988742
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcc-cCcee
Q 011629 157 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVT 235 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~-f~g~s 235 (481)
.++.++...|||+++++.|++++-. . ++..+.+.|+++. |.|++
T Consensus 285 ------~p~~~~~~~yda~~~~~~al~~ag~----------------------------~-~~~~~~~~l~~~~~~~g~~ 329 (366)
T 3td9_A 285 ------EPAALNALGYDAYMVLLDAIERAGS----------------------------F-DREKIAEEIRKTRNFNGAS 329 (366)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTS----------------------------C-CHHHHHHHHTTCCSEEETT
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHhCC----------------------------C-CHHHHHHHHHhCCCCcccc
Confidence 2467899999999999999997511 2 2789999999997 99999
Q ss_pred eeEEEccCCCCCCCcEEEEEeecCceEEEEEeeCC
Q 011629 236 GPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNH 270 (481)
Q Consensus 236 G~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~ 270 (481)
|++.||++|++. ..+.|+++++++++.|+.|++.
T Consensus 330 G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 330 GIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp EEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred eeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 999999999986 6799999999999999999864
No 18
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.82 E-value=1.1e-18 Score=170.27 Aligned_cols=222 Identities=12% Similarity=0.154 Sum_probs=176.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++..
T Consensus 140 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--d~~~~~~~l~~~~~dai~~~~~~~ 217 (375)
T 4evq_A 140 RATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV--EFQSALAEIASLKPDCVYAFFSGG 217 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHCCSEEEEECCTH
T ss_pred HHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc--cHHHHHHHHHhcCCCEEEEecCcc
Confidence 467888889999999999999999999999999999999999987777765433 577888899888899999989989
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecC--CchhHHHHHHHHhhhhccCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
.+..+++++.++|+. ..|+.++ |... ... ........|++....... ..+..++|.+.|++.+..
T Consensus 218 ~a~~~~~~~~~~g~~---vp~~~~~-~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---- 284 (375)
T 4evq_A 218 GALKFIKDYAAANLG---IPLWGPG-FLTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI---- 284 (375)
T ss_dssp HHHHHHHHHHHTTCC---CCEEEEG-GGTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS----
T ss_pred hHHHHHHHHHHcCCC---ceEEecC-cCCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC----
Confidence 999999999999875 2355554 3221 111 122245677777654433 458899999999987742
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEE
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~ 239 (481)
.++.++...|||+++++.|+++.-.. ..++..|.++|++++|+|++|++.
T Consensus 285 ---~p~~~~~~~yda~~~~~~al~~~g~~---------------------------~~~~~~l~~~l~~~~~~g~~G~i~ 334 (375)
T 4evq_A 285 ---PPDVFAVQGWDAGQLLDAGVKAVGGD---------------------------VAKRKELNAAMAAASFASPRGPFK 334 (375)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHTTTC---------------------------TTCHHHHHHHHHTCEEEETTEEEE
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhCCC---------------------------CCCHHHHHHHHhcCCcccCCccee
Confidence 34568899999999999999874110 113789999999999999999999
Q ss_pred EccCCCCCCCcEEEEEeecCceEEEEEeeC
Q 011629 240 FTSDRDLINPAYEVINVIGTGSRRIGYWSN 269 (481)
Q Consensus 240 Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~ 269 (481)
||++|++. ..+.|.++++++++.|+...+
T Consensus 335 f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 335 LSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp BCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred ECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 99999985 789999999999999998864
No 19
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.81 E-value=3.6e-19 Score=171.51 Aligned_cols=217 Identities=11% Similarity=0.086 Sum_probs=167.4
Q ss_pred hHhHHHH-HHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 2 AAIADIV-DYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 2 ~Ai~~ll-~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+++++.+ +++||++|++|+.++.+|....+.+++.+++.|+++.....++.... ++...++++++.++++|++.+..
T Consensus 126 ~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~i~~~~~~ 203 (346)
T 1usg_A 126 PTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK--DFSALIARLKKENIDFVYYGGYY 203 (346)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCC--CCHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCc--CHHHHHHHHHhcCCCEEEEcCcc
Confidence 4567776 66899999999998889988999999999999999987766754432 56678888988889999998877
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeee-cCCchhHHHHHHHHhhhhccCCCC
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY-TQSSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
..+..+++++.++|+.. .|+.++.|.... .. ........|++..... ....+..++|.+.|++.+..
T Consensus 204 ~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~-~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~---- 271 (346)
T 1usg_A 204 PEMGQMLRQARSVGLKT---QFMGPEGVGNAS-LS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD---- 271 (346)
T ss_dssp HHHHHHHHHHHHTTCCC---EEEECGGGCCTT-HH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC----
T ss_pred hHHHHHHHHHHHcCCCC---eEEecCCCCcHH-HH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC----
Confidence 88889999999998754 388877654321 10 1112345676666443 23457788999988876531
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEE
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~ 239 (481)
.++.++...|||++++++||+++-. .+ +..|.++|++.+|.|++|+++
T Consensus 272 ---~~~~~~~~~yda~~~~~~al~~~g~----------------------------~~-~~~l~~~l~~~~~~g~~G~i~ 319 (346)
T 1usg_A 272 ---PSGPYVWITYAAVQSLATALERTGS----------------------------DE-PLALVKDLKANGANTVIGPLN 319 (346)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHCC----------------------------CC-HHHHHHHHHHHCEEETTEEEC
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhCC----------------------------CC-HHHHHHHHHhCCCccceeeeE
Confidence 3456889999999999999998510 22 788999999999999999999
Q ss_pred EccCCCCCCCcEEEEEee-cCceEEE
Q 011629 240 FTSDRDLINPAYEVINVI-GTGSRRI 264 (481)
Q Consensus 240 Fd~~Gd~~~~~y~I~~~~-~~~~~~V 264 (481)
||++|++....|.|++++ +++++.|
T Consensus 320 f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 320 WDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp BCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ECCCCCccCCceEEEEEecCCEEEec
Confidence 999999865789999998 7777654
No 20
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.81 E-value=5.3e-19 Score=175.14 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=166.7
Q ss_pred hHhHHHHHHc--------CCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceE
Q 011629 2 AAIADIVDYF--------GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI 73 (481)
Q Consensus 2 ~Ai~~ll~~f--------gW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v 73 (481)
++++++++++ ||++|++|++|++||....+.|++.+++.|++|...+.++.... |+..++++|+++++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~~d~ 222 (419)
T 3h5l_A 145 GGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVS--DWGPTLAKLRADPPAV 222 (419)
T ss_dssp HHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCS--CCHHHHHHHHHSCCSE
T ss_pred HHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCc--cHHHHHHHHHhcCCCE
Confidence 4778888887 99999999999999999999999999999999999888876543 7889999999999999
Q ss_pred EEEEeC-cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEee-ecCCchhHHHHHHHHhh
Q 011629 74 LILHTY-DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRM-YTQSSEEKRKFVTRWRH 151 (481)
Q Consensus 74 Ivl~~~-~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~f~~~~~~ 151 (481)
|++.+. ...+..+++++.++|+ ...|+.++.+.... .. ........|++.... .....+..++|.+.|++
T Consensus 223 v~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~-~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~ 294 (419)
T 3h5l_A 223 IVVTHFYPQDQALFMNQFMTDPT---NSLVYLQYGASLAA-FR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKE 294 (419)
T ss_dssp EEECCCCHHHHHHHHHHHTTSCC---SCEEEECSGGGSHH-HH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHH
T ss_pred EEEccccCchHHHHHHHHHHcCC---CceEEecCCCCcHH-HH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHH
Confidence 999866 4678999999999886 45677776654321 10 111234556554432 23456788999999998
Q ss_pred hhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhccc
Q 011629 152 LTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNM 231 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f 231 (481)
.+... ..+.++...|||+++++.|+++...... + ....++..+.++|++++|
T Consensus 295 ~~g~~------p~~~~a~~~Yda~~~~~~a~~~a~~~~~-------------------~---g~~~~~~~l~~al~~~~~ 346 (419)
T 3h5l_A 295 RYGDL------SSTASGCQTYSALYAYSIAAALAGGPGA-------------------P---YDDVQNKAVADRLRSLIF 346 (419)
T ss_dssp HHCTT------SCHHHHHHHHHHHHHHHHHHHHTTSCCC-------------------T---TCHHHHHHHHHHHHHCEE
T ss_pred HhCCC------CCcchhHHHHHHHHHHHHHHHHhcCCcc-------------------C---CCccCHHHHHHHHHhCCc
Confidence 87421 1234789999999999999987532110 0 011237889999999999
Q ss_pred CceeeeEEEccCCCCC------------CCcEEEEEeecCce
Q 011629 232 TGVTGPIKFTSDRDLI------------NPAYEVINVIGTGS 261 (481)
Q Consensus 232 ~g~sG~v~Fd~~Gd~~------------~~~y~I~~~~~~~~ 261 (481)
.|++|.++||++|+.. ...+.|++++++++
T Consensus 347 ~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 347 RGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAE 388 (419)
T ss_dssp EETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTS
T ss_pred ccCceEEEECCCCCccccccCccCCccccCCceEEEeeCCce
Confidence 9999999999999853 11345777776666
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.81 E-value=3.8e-19 Score=172.16 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=172.1
Q ss_pred hHhHH-HHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 2 AAIAD-IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 2 ~Ai~~-ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+++++ |++++||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++.
T Consensus 126 ~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~ 203 (356)
T 3ipc_A 126 GIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDK--DFSALISKMKEAGVSIIYWGGLH 203 (356)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCC--CCHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCC--CHHHHHHHHHhcCCCEEEEccCc
Confidence 35666 6677899999999999999999999999999999999987777765433 67788999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec-CCchhHHHHHHHHhhhhccCCCC
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
..+..+++++.++|+.. .|+.++.+.... .. ........|++...... ...+..++|.+.|++. ..
T Consensus 204 ~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~-~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~---- 270 (356)
T 3ipc_A 204 TEAGLIIRQAADQGLKA---KLVSGDGIVSNE-LA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GF---- 270 (356)
T ss_dssp HHHHHHHHHHHHHTCCC---EEEECGGGCSHH-HH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TC----
T ss_pred hHHHHHHHHHHHCCCCC---cEEEeccccCHH-HH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CC----
Confidence 99999999999998753 477766553321 10 11123456665554332 3467889999999876 31
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEE
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~ 239 (481)
.++.++...|||+++++.|+++.-. . ++..+.+.|++.+|.|++|++.
T Consensus 271 ---~p~~~~~~~yda~~~~~~al~~ag~----------------------------~-~~~~~~~~l~~~~~~g~~G~~~ 318 (356)
T 3ipc_A 271 ---NPEAYTLYSYAAMQAIAGAAKAAGS----------------------------V-EPEKVAEALKKGSFPTALGEIS 318 (356)
T ss_dssp ---CCCTTHHHHHHHHHHHHHHHHHHTC----------------------------C-CHHHHHHHHTTCCBCCTTSSBC
T ss_pred ---CcchhHHHHHHHHHHHHHHHHHhCC----------------------------C-CHHHHHHHHHhCCCCCcceeeE
Confidence 2345789999999999999987511 2 2789999999999999999999
Q ss_pred EccCCCCCCCcEEEEEeec---CceEEEEEeeCC
Q 011629 240 FTSDRDLINPAYEVINVIG---TGSRRIGYWSNH 270 (481)
Q Consensus 240 Fd~~Gd~~~~~y~I~~~~~---~~~~~VG~~~~~ 270 (481)
||++|++....+.|++++. |+|+.+..|.+.
T Consensus 319 f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 319 FDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp BCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 9999999767899999995 899999988754
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.80 E-value=1.2e-18 Score=169.39 Aligned_cols=225 Identities=15% Similarity=0.162 Sum_probs=175.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++.+|....+.+++.+++.|+++.....++.... ++...++++++.++++|++++...
T Consensus 128 ~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~~ 205 (368)
T 4eyg_A 128 IIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANP--DFAPFLQRMKDAKPDAMFVFVPAG 205 (368)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSC--CCHHHHHHHHHHCCSEEEEECCTT
T ss_pred HHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCC--cHHHHHHHHHhcCCCEEEEeccch
Confidence 468888999999999999999999999999999999999999988877765433 677889999998899999988888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec--CCchhHHHHHHHHhhhhccCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
.+..+++++.++|+..++..|+.++++...... ........|++...+.. ...+..++|.+.| +.+..
T Consensus 206 ~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~---- 275 (368)
T 4eyg_A 206 QGGNFMKQFAERGLDKSGIKVIGPGDVMDDDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG---- 275 (368)
T ss_dssp CHHHHHHHHHHTTGGGTTCEEEEETTTTCHHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS----
T ss_pred HHHHHHHHHHHcCCCcCCceEEecCcccCHHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC----
Confidence 999999999999987655788888754322111 11123456666655443 3458899999999 66621
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEE
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~ 239 (481)
..++.++...|||+++++.||+++-. ..+ +..|.++|++++|.|++|+++
T Consensus 276 --~~p~~~~~~~yda~~~~~~al~~~g~---------------------------~~~-~~~l~~al~~~~~~g~~G~i~ 325 (368)
T 4eyg_A 276 --QRPGFMAVGGYDGIHLVFEALKKTGG---------------------------KAD-GDSLIAAMKGMKWESPRGPIS 325 (368)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHHTTT---------------------------CCS-HHHHHHHHTTCEEEETTEEEE
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHhCC---------------------------CCC-HHHHHHHHHcCCcccCCCCeE
Confidence 13466899999999999999997521 022 789999999999999999999
Q ss_pred Ec-cCCCCCCCcEEEEEee--cCce--EEEEEeeC
Q 011629 240 FT-SDRDLINPAYEVINVI--GTGS--RRIGYWSN 269 (481)
Q Consensus 240 Fd-~~Gd~~~~~y~I~~~~--~~~~--~~VG~~~~ 269 (481)
|| ++|+.. ..+.|.+++ ++++ +.++.|.+
T Consensus 326 f~~~~~~~~-~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 326 IDPETRDIV-QNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp ECTTTCCEE-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECcccCCcc-cceEEEEEEecCCeEEEEEeecccc
Confidence 99 788875 788899988 5655 55666654
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.80 E-value=1.5e-18 Score=167.99 Aligned_cols=223 Identities=16% Similarity=0.093 Sum_probs=172.6
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.|...||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++..
T Consensus 128 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--~~~~~~~~l~~~~~d~i~~~~~~~ 205 (358)
T 3hut_A 128 PNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR--RFDDVIDEIEDEAPQAIYLAMAYE 205 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHCCSEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCc--cHHHHHHHHHhcCCCEEEEccCch
Confidence 467788777799999999999999999999999999999999988777765433 577788899888899999988888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec--CCchhHHHHHHHHhhhhccCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
.+..+++++.++|+.. .|+..+.+...... ........|++...... ...+..++|.+.|++.+..
T Consensus 206 ~a~~~~~~~~~~g~~~---p~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---- 273 (358)
T 3hut_A 206 DAAPFLRALRARGSAL---PVYGSSALYSPKFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA---- 273 (358)
T ss_dssp HHHHHHHHHHHTTCCC---CEEECGGGCSHHHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHHHcCCCC---cEEecCcccCHHHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC----
Confidence 9999999999998753 47777655332100 11223466776665433 3467899999999987742
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHH-HHHHHHhc-ccCceeee
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKM-LLDNILQV-NMTGVTGP 237 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~l~~v-~f~g~sG~ 237 (481)
.++.++...|||+++++.|++++-. .+ +.. +.+.|+++ +|.|++|+
T Consensus 274 ---~p~~~~~~~yda~~~~~~al~~ag~----------------------------~~-~~~~~~~~l~~~~~~~g~~G~ 321 (358)
T 3hut_A 274 ---IPTLFAAHGYDAVGIMLAAVGRAGP----------------------------EV-TRESLRDALAATDRYAGVTGI 321 (358)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHCT----------------------------TC-CHHHHHHHHHTCCSEEETTEE
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHhCC----------------------------CC-hHHHHHHHHHhcCCCcCCcee
Confidence 3567899999999999999998511 12 667 99999999 99999999
Q ss_pred EEEccCCCCCCCcEEEEEeecCceEEEEEeeCC
Q 011629 238 IKFTSDRDLINPAYEVINVIGTGSRRIGYWSNH 270 (481)
Q Consensus 238 v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~ 270 (481)
++||++|++....+.|+++++++++.+..+.+.
T Consensus 322 ~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 322 TRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp EEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred eEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 999999998447899999998889888766543
No 24
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.80 E-value=1.5e-18 Score=169.91 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=174.4
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhc--CCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~--gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+++++++.++||++|++|+.|++||....+.+++.+++. |+++.....++.... ++...+++|+++++++|++++.
T Consensus 131 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~--d~~~~~~~i~~~~~d~v~~~~~ 208 (387)
T 3i45_A 131 AMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKL--DAGPTVQALQQAEPEGLFNVLF 208 (387)
T ss_dssp HHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--CHHHHHHHHHHTCCSEEEECCC
T ss_pred HHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCc--CHHHHHHHHHhCCCCEEEEcCc
Confidence 578899999999999999999999999999999999998 999988877765433 7889999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEe--eecCCchhHHHHHHHHhhhhccCC
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLR--MYTQSSEEKRKFVTRWRHLTRRNT 157 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~f~~~~~~~~~~~~ 157 (481)
...+..+++++.++|+.. .+++.+..+...... .........|++... ......+..++|.+.|++.+..
T Consensus 209 ~~~~~~~~~~~~~~g~~~--~~~i~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-- 280 (387)
T 3i45_A 209 GADLPKFVREGRVRGLFA--GRQVVSMLTGEPEYL----NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE-- 280 (387)
T ss_dssp TTHHHHHHHHHHHHTSST--TCEEEEEEEESHHHH----GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS--
T ss_pred cHHHHHHHHHHHHcCCCC--CCeEEeecCCChHHH----HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCC--
Confidence 999999999999999743 245544322111000 011112345655442 2234678899999999988742
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeee
Q 011629 158 LNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~ 237 (481)
.++.++...|||+++++.|++++-. .+ +..|.++|++++|.|++|+
T Consensus 281 -----~p~~~~~~~Yda~~~~a~Al~~ag~----------------------------~~-~~~v~~al~~~~~~g~~G~ 326 (387)
T 3i45_A 281 -----DPFVGSLVGYNTLTAMAVAFEKAGG----------------------------TE-SETLVETLKDMAFSTPMGP 326 (387)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHTS----------------------------CC-HHHHHHHTTTCEEEETTEE
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHhCC----------------------------CC-HHHHHHHHhcCCCcCCCCC
Confidence 2456889999999999999998510 22 7899999999999999999
Q ss_pred EEEccCCCCCCCcEEEEEee-cCceEEEEEeeCCCCCc
Q 011629 238 IKFTSDRDLINPAYEVINVI-GTGSRRIGYWSNHSGLS 274 (481)
Q Consensus 238 v~Fd~~Gd~~~~~y~I~~~~-~~~~~~VG~~~~~~~l~ 274 (481)
++|++++.+......|.++. .++...++.|.+..+..
T Consensus 327 i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~ 364 (387)
T 3i45_A 327 LSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGS 364 (387)
T ss_dssp EEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGG
T ss_pred eEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchh
Confidence 99997443334677777776 46678899998765443
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.77 E-value=9.1e-18 Score=163.65 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=167.5
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++++|....+.+++.+++.|++|.....++.... ++...+++++++++++|++.+...
T Consensus 129 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~--d~~~~l~~i~~~~~d~v~~~~~~~ 206 (375)
T 3i09_A 129 KGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSAS--DFSSFLLQAQSSKAQILGLANAGG 206 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS--CCHHHHHHHHHTCCSEEEEECCHH
T ss_pred HHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCc--cHHHHHHHHHhCCCCEEEEecCch
Confidence 577888889999999999999999999999999999999999988887875533 678899999999999999999888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec-CCchhHHHHHHHHhhhhccCCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNG 160 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~ 160 (481)
.+..+++++.++|+..+. .++..+.+..... ....+...|++...... ...+..++|.+.|++.+..
T Consensus 207 ~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~----- 274 (375)
T 3i09_A 207 DTVNAIKAAKEFGITKTM-KLAALLMFINDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK----- 274 (375)
T ss_dssp HHHHHHHHHHHTTGGGTC-EEEESSCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS-----
T ss_pred hHHHHHHHHHHcCCCcCc-eEEecccchhhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC-----
Confidence 999999999999987766 4444333322110 11113456665554332 2357889999999988742
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEEE
Q 011629 161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKF 240 (481)
Q Consensus 161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~F 240 (481)
.++.++...|||+++++.||+++-. . ++..|.++|++++|.|++|.+.|
T Consensus 275 --~p~~~a~~~Yda~~~~~~Al~~ag~----------------------------~-~~~~l~~aL~~~~~~~~~G~~~f 323 (375)
T 3i09_A 275 --MPSSLQAADYSSVTTYLKAVQAAGS----------------------------T-DSDKVMAQLKKMKIDDFYAKGYI 323 (375)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTS----------------------------C-CHHHHHHHHTTSCEESSSCEEEE
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHhCC----------------------------C-CHHHHHHHHhCCCccCCCCceEE
Confidence 3456889999999999999998510 2 27899999999999999999999
Q ss_pred ccCCCCCCCcEEEEEeecC
Q 011629 241 TSDRDLINPAYEVINVIGT 259 (481)
Q Consensus 241 d~~Gd~~~~~y~I~~~~~~ 259 (481)
|++|++. ..+.|++++.+
T Consensus 324 ~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 324 RTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp CTTSBEE-CCEEEEEECCG
T ss_pred CCCCCee-eeeEEEEEecc
Confidence 9999986 67788888754
No 26
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.75 E-value=2.3e-17 Score=161.07 Aligned_cols=213 Identities=10% Similarity=0.077 Sum_probs=166.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|++|+++|....+.+++.+++.|++|.....++.... ++...+++|+++++++|++.+...
T Consensus 131 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~--d~~~~l~~i~~~~~d~v~~~~~~~ 208 (379)
T 3n0w_A 131 KTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQ--DFSSYLLQAKASGAQLIVSTSGGA 208 (379)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCC--CCHHHHHHHHHHTCSEEEECCCHH
T ss_pred HHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCC--CHHHHHHHHHHCCCCEEEEecccc
Confidence 577888889999999999999999999999999999999999998888876533 678899999999999999988888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec-CCchhHHHHHHHHhhhhccCCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNG 160 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~ 160 (481)
.+..+++++.++|+..+. .++.+..+... ... ........|+....... ...+..++|.+.|++.+..
T Consensus 209 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~----- 277 (379)
T 3n0w_A 209 ANINIMKQAREFGLPSKT-QKVGGMIDILT-DVK----SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK----- 277 (379)
T ss_dssp HHHHHHHHHHHTTCSCSS-CEEECCBCCHH-HHH----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS-----
T ss_pred hHHHHHHHHHHcCCCCCC-cEEEecccchH-HHH----hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC-----
Confidence 899999999999987553 34444433211 110 11123456666554332 2357889999999988742
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceee-eEE
Q 011629 161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIK 239 (481)
Q Consensus 161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG-~v~ 239 (481)
.++.+++..|||+++++.||+++-. . ++..|.++|++++|.+..| .+.
T Consensus 278 --~p~~~~~~~Yda~~~~~~Al~~ag~----------------------------~-~~~~v~~aL~~~~~~~~~G~~~~ 326 (379)
T 3n0w_A 278 --MPTNNQAGGYSAALQYLKAVNAIGS----------------------------K-DPQKVFAYLKTIKFDDAVTRHGT 326 (379)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTC----------------------------C-CHHHHHHHHTTCCBCSSSCCSBE
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhCC----------------------------C-CHHHHHHHHhcCCccccCCCcee
Confidence 3466889999999999999998510 2 2789999999999999998 599
Q ss_pred EccCCCCCCCcEEEEEeecC
Q 011629 240 FTSDRDLINPAYEVINVIGT 259 (481)
Q Consensus 240 Fd~~Gd~~~~~y~I~~~~~~ 259 (481)
|+++|++. ..+.|++++.+
T Consensus 327 f~~~g~~~-~~~~i~~~~~~ 345 (379)
T 3n0w_A 327 LRPGGRLV-RDMYLVRAKKP 345 (379)
T ss_dssp ECTTSBEE-CCEEEEEECCG
T ss_pred ECCCCCcc-cceEEEEEEch
Confidence 99999986 78889988754
No 27
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.75 E-value=4.8e-17 Score=159.50 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=172.3
Q ss_pred hHhHHHHHH-cCCcEEEEEEE-eCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHH--hccCCceEEEEE
Q 011629 2 AAIADIVDY-FGWRNVIALYV-DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT--VSSMMSRILILH 77 (481)
Q Consensus 2 ~Ai~~ll~~-fgW~~V~ii~~-dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~--i~~s~~~vIvl~ 77 (481)
.++++.+.. +||++|++|+. ++++|....+.+++.+++.|++|.....++.... ++...+++ |+++++++|++.
T Consensus 129 ~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--d~~~~~~~~~l~~~~~dav~~~ 206 (391)
T 3eaf_A 129 CSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRAT--EADAERIAREMLAADPDYVWCG 206 (391)
T ss_dssp HHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCC--HHHHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCc--CHHHHHHHHHHHHcCCCEEEEe
Confidence 356677666 79999999999 8999999999999999999999998888876443 78899999 999999999999
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCcccccccccccee-eEEEeeec-----CCchhHHHHHHHHhh
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQG-VLTLRMYT-----QSSEEKRKFVTRWRH 151 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~-----~~~~~~~~f~~~~~~ 151 (481)
++...+..+++++.++|+.. .++.++++... ... ........| ++...... ...+. .+|.+.|++
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~ 277 (391)
T 3eaf_A 207 NTISSCSLLGRAMAKVGLDA---FLLTNVWGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAAR 277 (391)
T ss_dssp SCHHHHHHHHHHHHHHTCCC---EEEECGGGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHCCCCc---eEEEeccCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHH
Confidence 98889999999999998753 35555433221 110 112244677 65554433 23454 579999988
Q ss_pred hhc-cCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcc
Q 011629 152 LTR-RNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN 230 (481)
Q Consensus 152 ~~~-~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~ 230 (481)
.+. ..+ ..+.++...|||+++++.|++++...+ + ...+ +..+.+.|++.+
T Consensus 278 ~~~~~~p-----~~~~~~~~~yda~~~l~~Al~~a~~~g--------------------~---~~~~-~~~v~~aL~~~~ 328 (391)
T 3eaf_A 278 MNGVSED-----QINLRVVQGFVNVWLLIKAIESVTSQD--------------------L---QERG-GEALKEALEANT 328 (391)
T ss_dssp HTTCCGG-----GCCHHHHHHHHHHHHHHHHHTTSCHHH--------------------H---HHHT-HHHHHHHHHHCC
T ss_pred HhCCCCc-----ccccHHHHHHHHHHHHHHHHHHHHhcC--------------------C---CCCC-HHHHHHHHHhCC
Confidence 764 110 124688999999999999998742110 0 0123 788999999988
Q ss_pred cC--ceee-eEEEccCCCCCCCcEEEEEe-ecCceEEEEEeeCC
Q 011629 231 MT--GVTG-PIKFTSDRDLINPAYEVINV-IGTGSRRIGYWSNH 270 (481)
Q Consensus 231 f~--g~sG-~v~Fd~~Gd~~~~~y~I~~~-~~~~~~~VG~~~~~ 270 (481)
|. |++| ++.||++|.+....+.|.++ ++++++.|+.|...
T Consensus 329 ~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~~ 372 (391)
T 3eaf_A 329 FDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEAP 372 (391)
T ss_dssp BCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECCC
T ss_pred CCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecCc
Confidence 98 9999 99999876555688999999 78899999999753
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.75 E-value=2.9e-17 Score=161.06 Aligned_cols=232 Identities=10% Similarity=-0.007 Sum_probs=174.2
Q ss_pred hHhHHHHHH-cCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 2 AAIADIVDY-FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 2 ~Ai~~ll~~-fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
.++++.+.. +||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++.
T Consensus 131 ~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--d~~~~~~~l~~~~~dav~~~~~~ 208 (392)
T 3lkb_A 131 VALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNL--DNTALLKRFEQAGVEYVVHQNVA 208 (392)
T ss_dssp HHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCC--CCHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCc--CHHHHHHHHHhcCCCEEEEecCc
Confidence 456766655 799999999999999999999999999999999988877765433 67788999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec--CCchhHHHHHHHHhhhhccCCC
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTL 158 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~f~~~~~~~~~~~~~ 158 (481)
..+..+++++.++|+.. .|+.++++... ... ........|++...... ...+...+|.+.|++.+...+.
T Consensus 209 ~~a~~~~~~~~~~g~~~---~~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~ 280 (392)
T 3lkb_A 209 GPVANILKDAKRLGLKM---RHLGAHYTGGP-DLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPEN 280 (392)
T ss_dssp HHHHHHHHHHHHTTCCC---EEEECGGGCSH-HHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHH
T ss_pred chHHHHHHHHHHcCCCc---eEEEecCcccH-HHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcc
Confidence 99999999999998743 56666544321 110 11223466766665432 2245678899998887642110
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcc----cC--
Q 011629 159 NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN----MT-- 232 (481)
Q Consensus 159 ~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~----f~-- 232 (481)
.....++...|||+++++.||++.-.... ..+ +..+.+.|++++ |.
T Consensus 281 ---~~~~~~~~~~yda~~~~~~al~~ag~~~~------------------------~~~-~~~v~~aL~~~~~~~~~~~~ 332 (392)
T 3lkb_A 281 ---FIESVNYTNGMLAAAIAVEAIRRAQERFK------------------------RIT-NETVYQAIVGMNGPNAFKPG 332 (392)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHHHHHHHHHS------------------------SCC-HHHHHHHHHTCCGGGCBCCS
T ss_pred ---cccchhHHHHHHHHHHHHHHHHHhhccCC------------------------CCC-HHHHHHHHHhcCCCcCcccc
Confidence 00123478999999999999998643100 022 789999999997 98
Q ss_pred -----ceeeeEEEccCCCCCCCcEEEEEeecCceEEEEEeeCCC
Q 011629 233 -----GVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHS 271 (481)
Q Consensus 233 -----g~sG~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~ 271 (481)
|++|++.||++|++....+.|.++++++++.|+.|....
T Consensus 333 ~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~ 376 (392)
T 3lkb_A 333 FAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSA 376 (392)
T ss_dssp SBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCH
T ss_pred cccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchh
Confidence 999999999988765577899999999999999997654
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.74 E-value=1.3e-16 Score=155.20 Aligned_cols=216 Identities=13% Similarity=0.088 Sum_probs=166.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 80 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~- 80 (481)
.++++++++.||++|++|++|++||....+.+++.+++.|++|...+.++...+ |+..++.+|+++++++|+++...
T Consensus 128 ~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~pd~v~~~~~~~ 205 (371)
T 4f06_A 128 VPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTT--DFGPIMQRIKNSGADMIFTFLPAG 205 (371)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHTCSEEEEECCTT
T ss_pred hhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccc--cHHHHHHHHHhcCCCEEEEEeccC
Confidence 467889999999999999999999999999999999999999999999987654 78999999999999999887654
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec--CCchhHHHHHHHHhhhhccCCC
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTL 158 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~f~~~~~~~~~~~~~ 158 (481)
.....+++++.+.|+......++........... ........|++...... ...|..++|.+.|++.+...
T Consensus 206 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~-- 278 (371)
T 4f06_A 206 PPTLGFVKAYIDNGLKAGGVKLMSTGDVVTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKL-- 278 (371)
T ss_dssp HHHHHHHHHHHHTTTTTTTCEEEEEGGGGCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCG--
T ss_pred chhhHHHHHHHHhhhhccCcEEEEecccCCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCC--
Confidence 6777899999999987666677766543222111 11223445655554332 34678899999999876321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeE
Q 011629 159 NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPI 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v 238 (481)
..++.++...|||+++++.|+++.-. ..+ +..+.+.|++++|.|++|++
T Consensus 279 ---~~~~~~a~~~Yda~~~l~~Ai~~~ag---------------------------~~d-~~~v~~al~~~~~~~~~G~i 327 (371)
T 4f06_A 279 ---DEVTMTSVAAYDGARLIYKMIEATSG---------------------------KSD-PDKAIAAVKGMKWVSPRGEV 327 (371)
T ss_dssp ---GGCCHHHHHHHHHHHHHHHHHHHTTT---------------------------SCC-HHHHHHHHTTCEEEETTEEE
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHhcC---------------------------CCC-HHHHHHHHhCCCeeCCcEEE
Confidence 12456789999999999999975210 023 78899999999999999999
Q ss_pred EEccCCCCCCCcEEEEEee
Q 011629 239 KFTSDRDLINPAYEVINVI 257 (481)
Q Consensus 239 ~Fd~~Gd~~~~~y~I~~~~ 257 (481)
+||++++.....+.|.+++
T Consensus 328 ~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 328 SIDPETRHITQNVYLREVE 346 (371)
T ss_dssp EECTTTCBEEEEEEEEEEE
T ss_pred EEcCCCCcccCCEEEEEEE
Confidence 9998776544566677776
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.72 E-value=9.5e-17 Score=155.75 Aligned_cols=217 Identities=10% Similarity=0.028 Sum_probs=165.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++..
T Consensus 130 ~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~~ 207 (364)
T 3lop_A 130 DKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTA--NVGPAVDKLLAADVQAIFLGATAE 207 (364)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSC--CCHHHHHHHHHSCCSEEEEESCHH
T ss_pred HHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCc--cHHHHHHHHHhCCCCEEEEecCcH
Confidence 467888889999999999999999999999999999999999987777765433 678889999999999999999888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCcccccccc-ccceeeEEEee----ecCCchhHHHHHHHHhhhhccC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKM-DDIQGVLTLRM----YTQSSEEKRKFVTRWRHLTRRN 156 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~~----~~~~~~~~~~f~~~~~~~~~~~ 156 (481)
.+..+++++.++|+..+ |+..+.+...... .... ....|++.... .....+..++|.+.|++.+..
T Consensus 208 ~a~~~~~~~~~~g~~~~---~i~~~~~~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~- 278 (364)
T 3lop_A 208 PAAQFVRQYRARGGEAQ---LLGLSSIDPGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK- 278 (364)
T ss_dssp HHHHHHHHHHHTTCCCE---EEECTTSCHHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHHHHcCCCCe---EEEeccCChHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-
Confidence 99999999999997543 6666554322110 1112 34566665542 124568899999999987642
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhc-ccCc-e
Q 011629 157 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTG-V 234 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v-~f~g-~ 234 (481)
...++.++...|||+++++.|++++-. ..+ +..+.+.|+++ +|.| .
T Consensus 279 ----~~~p~~~a~~~yda~~~~~~al~~ag~---------------------------~~~-~~~v~~aL~~~~~~~~~~ 326 (364)
T 3lop_A 279 ----DVDLSFRAVEGFVAAKVLAEAIRRAGP---------------------------KPT-REQVRHALTELRDYDVGG 326 (364)
T ss_dssp ----TCCCCHHHHHHHHHHHHHHHHHHHHCS---------------------------SCC-HHHHHHHHHTCEEEESST
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHhCC---------------------------CCC-HHHHHHHHHhcCCccCCC
Confidence 113567889999999999999997510 022 78999999999 7999 9
Q ss_pred eeeEEEccCCCCCCCcEEEEEeecCce
Q 011629 235 TGPIKFTSDRDLINPAYEVINVIGTGS 261 (481)
Q Consensus 235 sG~v~Fd~~Gd~~~~~y~I~~~~~~~~ 261 (481)
+|+++|+++++.......|.+++.+++
T Consensus 327 ~g~i~f~~~~~~~~~~~~i~~~~~~~~ 353 (364)
T 3lop_A 327 GFTVDFTDRSRPGSHYIELGVVGPNGL 353 (364)
T ss_dssp TCEEECSSTTSCSCCCCEEEEECTTSC
T ss_pred CeeeecCCCCcCCcceEEEEEEcCCCc
Confidence 999999988765545566666665543
No 31
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.72 E-value=2.5e-16 Score=154.05 Aligned_cols=226 Identities=10% Similarity=0.036 Sum_probs=167.6
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.|...||++|++|+.++.+|....+.+++.+++.|+++.....++......++...+++|++.++++|++.++..
T Consensus 129 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~ 208 (385)
T 1pea_A 129 APLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGT 208 (385)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTH
T ss_pred HHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccc
Confidence 46778888889999999999888898899999999999999988765565422445788889999887899998877777
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeec--CCchhHHHHHHHHhhhhccCCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLN 159 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~ 159 (481)
.+..+++++.++|+......++ +..|... ... ....+...|++...+.. ...+..++|.+.|++.++.
T Consensus 209 ~a~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~---- 278 (385)
T 1pea_A 209 GTAELYRAIARRYGDGRRPPIA-SLTTSEA-EVA----KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE---- 278 (385)
T ss_dssp HHHHHHHHHHHHHCSSCCCCEE-ESSCCHH-HHT----TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT----
T ss_pred cHHHHHHHHHHcCCCcCCceEE-ecccchH-HHH----hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC----
Confidence 8899999999998764333344 4333221 110 11113456766665332 3467889999999876631
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeEE
Q 011629 160 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v~ 239 (481)
...++.++...|||+++++.||+++-. .+ +..|.++|++++|.|++|+++
T Consensus 279 -~~~~~~~~~~~yda~~~~~~Al~~ag~----------------------------~~-~~~l~~al~~~~~~g~~G~i~ 328 (385)
T 1pea_A 279 -NATITAWAEAAYWQTLLLGRAAQAAGN----------------------------WR-VEDVQRHLYDIDIDAPQGPVR 328 (385)
T ss_dssp -TCCCCHHHHHHHHHHHHHHHHHHHHTS----------------------------CC-HHHHHHHHTTCCEEETTEEEE
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHhCC----------------------------CC-HHHHHHHHhhCcccCCCCCeE
Confidence 112456889999999999999998510 12 788999999999999999999
Q ss_pred EccCCCCCCCcEEEEEe-ecCceEEEEEe
Q 011629 240 FTSDRDLINPAYEVINV-IGTGSRRIGYW 267 (481)
Q Consensus 240 Fd~~Gd~~~~~y~I~~~-~~~~~~~VG~~ 267 (481)
||++++.....+.|.++ ++++++.|...
T Consensus 329 f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 329 VERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred EcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 99855433467889998 67788887654
No 32
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.71 E-value=1.7e-16 Score=153.58 Aligned_cols=224 Identities=9% Similarity=0.016 Sum_probs=166.9
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|++++...
T Consensus 124 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--~~~~~~~~l~~~~~dav~~~~~~~ 201 (362)
T 3snr_A 124 KVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDT--SVAGQALKLVAANPDAILVGASGT 201 (362)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS--CCHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCC--CHHHHHHHHHhcCCCEEEEecCcc
Confidence 567888889999999999999999999999999999999999887777765433 577788888888899999988788
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeee----------cCCchhHHHHHHHHhh
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY----------TQSSEEKRKFVTRWRH 151 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~----------~~~~~~~~~f~~~~~~ 151 (481)
.+..+++++.++|+..+ ++....+.... .. ........|++..... .+..+..++|.+.|++
T Consensus 202 ~a~~~~~~~~~~g~~~p---~i~~~g~~~~~-~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 273 (362)
T 3snr_A 202 AAALPQTTLRERGYNGL---IYQTHGAASMD-FI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEE 273 (362)
T ss_dssp HHHHHHHHHHHTTCCSE---EEECGGGCSHH-HH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcc---EEeccCcCcHH-HH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHH
Confidence 89999999999997643 45555443221 10 1122345666654321 1223568899999998
Q ss_pred hhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhc-c
Q 011629 152 LTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-N 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v-~ 230 (481)
.+.. ..++.++...|||+++++.||++..+.... ....++..|.+.|+++ +
T Consensus 274 ~~~~------~~p~~~~~~~yda~~~~~~al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~ 325 (362)
T 3snr_A 274 KYGP------SSRSQFAGHSYDAFKVLERVVPVALKKAKP----------------------GTQEFREALREAFLTEKD 325 (362)
T ss_dssp HHCT------TCCCHHHHHHHHHHHHHHHHHHHHHHHCCT----------------------TSHHHHHHHHHHHHHCCC
T ss_pred HhCC------CCCCchhHhHHHHHHHHHHHHHHhhccccC----------------------CCcchHHHHHHHHHhcCC
Confidence 7742 124678999999999999999987543110 0012378899999999 8
Q ss_pred cCceeeeEEEccC---CCCCCCcEEEEEeecCceEEE
Q 011629 231 MTGVTGPIKFTSD---RDLINPAYEVINVIGTGSRRI 264 (481)
Q Consensus 231 f~g~sG~v~Fd~~---Gd~~~~~y~I~~~~~~~~~~V 264 (481)
|.|++|+++|+++ |+. +..+.|+++++++++.|
T Consensus 326 ~~g~~G~~~f~~~~~~g~~-~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 326 IAASQGVYNFTETDRYGLD-DRSRILLTVKNGKYVIV 361 (362)
T ss_dssp EECSSCEECCCSSCSSCCC-GGGCEEEEEETTEEEEC
T ss_pred cccceeeEEeCCCCCCCCC-CCCeEEEEEECCEEEEc
Confidence 9999999999876 433 36688999988877654
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.69 E-value=1.9e-16 Score=154.75 Aligned_cols=225 Identities=13% Similarity=0.104 Sum_probs=166.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+.++||++|++|+.++++|....+.+++.+++.|+++.....++.... ++...++++++.++++|+++++..
T Consensus 148 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~~~~~~~dav~~~~~~~ 225 (386)
T 3sg0_A 148 EAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDA--SVTGQVLKIIATKPDAVFIASAGT 225 (386)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCS--CCHHHHHHHHHTCCSEEEEECCSG
T ss_pred HHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCC--cHHHHHHHHHhcCCCEEEEecCcc
Confidence 577888889999999999999999999999999999999999986666665433 677888999999999999998888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeee-------cCC---chhHHHHHHHHhh
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY-------TQS---SEEKRKFVTRWRH 151 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-------~~~---~~~~~~f~~~~~~ 151 (481)
.+..+++++.++|+.. .++..+.+... ... ........|++..... ... .+..++|.+.|++
T Consensus 226 ~a~~~~~~~~~~g~~~---~~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 297 (386)
T 3sg0_A 226 PAVLPQKALRERGFKG---AIYQTHGVATE-EFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKA 297 (386)
T ss_dssp GGHHHHHHHHHTTCCS---EEECCGGGCSH-HHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCC---cEEeccccCCH-HHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHH
Confidence 8999999999999763 35655544321 110 1122345666554321 112 2457899999988
Q ss_pred hhccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhc-c
Q 011629 152 LTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-N 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v-~ 230 (481)
.+.. ..++.++...|||+++++.|++++.+.... ....++..+.+.|+++ +
T Consensus 298 ~~~~------~~p~~~~~~~yda~~~~~~al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~ 349 (386)
T 3sg0_A 298 ANGG------AAPTIFGVHLWDSMTLVENAIPAALKAAKP----------------------GTPEFRAAIRDQIEKSKD 349 (386)
T ss_dssp HTTT------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCT----------------------TSHHHHHHHHHHHTTCCS
T ss_pred HhCC------CCCChhHHHHHHHHHHHHHHHHHhhhccCC----------------------CCcchHHHHHHHHHhccC
Confidence 7742 124668999999999999999987543210 0012267899999999 8
Q ss_pred cCceeeeEEEccCCCC--CCCcEEEEEeecCceEEE
Q 011629 231 MTGVTGPIKFTSDRDL--INPAYEVINVIGTGSRRI 264 (481)
Q Consensus 231 f~g~sG~v~Fd~~Gd~--~~~~y~I~~~~~~~~~~V 264 (481)
|.|++|++.|++++.. .+..+.|+++++++++.+
T Consensus 350 ~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 350 LALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp EEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred ccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 9999999999876432 135688999988877654
No 34
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.64 E-value=1.4e-16 Score=145.42 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=94.0
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEE
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 394 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 394 (481)
+.++|+||+.. +||||.+.++ +|++.||++||+++||+++ |++++ +++ ..|++++.+|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFK--FKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEE--EEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEE--EEE-------CCHHHHHHHHHCCCCCEec
Confidence 45789999986 8999999986 8999999999999999998 86644 444 3499999999999999999
Q ss_pred eeeeeccccccceeeccceeecceE-EEEecCCCCcCccccccCcch
Q 011629 395 GDFAITTERTKMVDFTQPYIESGLV-VVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 395 ~~~~~t~~r~~~~~fs~p~~~~~~~-~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+++++|++|++.++||.||+..... ++++++...+..+.+|+..+.
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL~g~~v 121 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRV 121 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSGGGGTTCEE
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCchHHhcCCeE
Confidence 8999999999999999997765554 455555566777888877654
No 35
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.64 E-value=7e-15 Score=141.93 Aligned_cols=215 Identities=13% Similarity=0.162 Sum_probs=154.7
Q ss_pred hHhHHHHHHcCC-cEEEEEEEe-CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 2 AAIADIVDYFGW-RNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 2 ~Ai~~ll~~fgW-~~V~ii~~d-d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+++++++...+| +++++++.+ ++||....+.+.+ ..|+.|...+.++.... |+..++.+|+++++++|++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~~d~v~~~~~ 205 (353)
T 4gnr_A 131 KIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRE---SYKGEIVADETFVAGDT--DFQAALTKMKGKDFDAIVVPGY 205 (353)
T ss_dssp HHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHH---HCCSEEEEEEEECTTCC--CCHHHHHHHHTSCCSEEECCSC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHH---HcCCEEEEEEeeCCCCC--CHHHHHHHHHhcCCCEEEEecC
Confidence 466777766554 455555543 3477665555543 45889988888877654 7899999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeee---cCCchhHHHHHHHHhhhhccC
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY---TQSSEEKRKFVTRWRHLTRRN 156 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~f~~~~~~~~~~~ 156 (481)
..++..+++++.++|+.. .++..+.+...... .....+...|....... ....+..++|.+.|++.+..
T Consensus 206 ~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~- 277 (353)
T 4gnr_A 206 YNEAGKIVNQARGMGIDK---PIVGGDGFNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE- 277 (353)
T ss_dssp HHHHHHHHHHHHHTTCCS---CEEECGGGCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS-
T ss_pred cHHHHHHHHHHHHcCCCC---cEEEecccccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC-
Confidence 999999999999998753 35555544322110 01112334555544332 23457788999999988752
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhc-ccCcee
Q 011629 157 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVT 235 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v-~f~g~s 235 (481)
.++.++...|||+++++.|+++. . ++..+.+.|+++ +|+|++
T Consensus 278 ------~p~~~a~~~Yda~~~la~Ai~~a------------------------------~-~~~~v~~aL~~~~~~~g~~ 320 (353)
T 4gnr_A 278 ------EPSTFAALAYDSVHLVANAAKGA------------------------------K-NSGEIKDNLAXTKDFEGVT 320 (353)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHTTC------------------------------S-SHHHHHHHHHTCCCEEETT
T ss_pred ------CCChhHHHHHHHHHHHHHHHhcC------------------------------C-CHHHHHHHHHhcCCCccCc
Confidence 34668899999999999998642 1 156788999987 699999
Q ss_pred eeEEEccCCCCCCCcEEEEEeecCceEEEEEe
Q 011629 236 GPIKFTSDRDLINPAYEVINVIGTGSRRIGYW 267 (481)
Q Consensus 236 G~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~ 267 (481)
|+++||++|++. ..+.|+++++|+++.+...
T Consensus 321 G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 321 GQTSFDADHNTV-KTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp EEECCCTTSCCC-CCEEEEEEETTEEEEEEEE
T ss_pred eeEEECCCcCCc-CCeEEEEEECCEEEEEEEe
Confidence 999999999986 7778999988888776544
No 36
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.62 E-value=3.1e-15 Score=145.61 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=149.7
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC-----ceEEEE
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-----SRILIL 76 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~-----~~vIvl 76 (481)
.+++.+++++|| +|++|+.|++||....+.|++.+++.|++|...+.++.... |+..++++|++++ +++|++
T Consensus 131 ~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~--d~~~~l~~i~~~~~~~~~~d~v~~ 207 (374)
T 3n0x_A 131 ISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTT--DFTAVGQRLFDALKDKPGKKIIWV 207 (374)
T ss_dssp HHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCC--CCHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCc--cHHHHHHHHHhcCCCCCCCCEEEE
Confidence 356678889999 79999999999999999999999999999999888876543 7889999999887 999888
Q ss_pred EeCcHHHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEee---ecCCchhHHHHHHHHhhhh
Q 011629 77 HTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRM---YTQSSEEKRKFVTRWRHLT 153 (481)
Q Consensus 77 ~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~---~~~~~~~~~~f~~~~~~~~ 153 (481)
....... .+.++.++++...++.+++.+...... .. .....|+.+... ..+..+..++|.+.|++.+
T Consensus 208 ~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~-~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~ 277 (374)
T 3n0x_A 208 IWAGGGD--PLTKLQDMDPKRYGIELSTGGNILPAL-------AA-YKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF 277 (374)
T ss_dssp CCCSSSC--HHHHHHHTCGGGGTEEEEECCCCTTGG-------GG-GGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH
T ss_pred EecCCcH--HHHHHHHcchhhcCCeeeeccccchhh-------hh-hhhhcCccccceeccCCCCCHHHHHHHHHHHHHH
Confidence 6332111 233444455544455555433211110 11 122334444322 2345678899999999887
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCc
Q 011629 154 RRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTG 233 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g 233 (481)
.. .++.++...|||+++++.|+++.-. .+ +..|.++|++++|.|
T Consensus 278 g~-------~p~~~a~~~Yda~~~l~~Al~~ag~----------------------------~~-~~~v~~aL~~~~~~g 321 (374)
T 3n0x_A 278 NA-------PPDFFTAGGFSAAMAVVTAVQKAKS----------------------------TD-TEKLIAAMEGMEFDT 321 (374)
T ss_dssp SS-------CCCHHHHHHHHHHHHHHHHHHHHTS----------------------------CC-HHHHHHHHTTCEEEE
T ss_pred CC-------CCChhHHHHHHHHHHHHHHHHHhCC----------------------------CC-HHHHHHHHhcCCccC
Confidence 42 3466889999999999999987410 22 789999999999999
Q ss_pred eeeeEEEcc-CCCCCCCcEEEEEeec
Q 011629 234 VTGPIKFTS-DRDLINPAYEVINVIG 258 (481)
Q Consensus 234 ~sG~v~Fd~-~Gd~~~~~y~I~~~~~ 258 (481)
++|+++||+ +|+.. ..+.|++++.
T Consensus 322 ~~G~i~f~~~~~~~~-~~~~i~~~~~ 346 (374)
T 3n0x_A 322 PKGKMVFRKEDHQAL-QSMYHFKVKV 346 (374)
T ss_dssp TTEEEEECTTTCBEE-CCEEEEEEEC
T ss_pred CCCCEEECcccCccc-cceEEEEEEe
Confidence 999999995 56654 7888888874
No 37
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.62 E-value=2.1e-16 Score=144.14 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=94.6
Q ss_pred CceEEEeecCCCCCcCcEEec--CCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEE
Q 011629 317 GRHLRIGVPSQVIYPEFVAQG--KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 394 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~--~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 394 (481)
.++|+||+.. +||||.|.+ +++|++.||++||+++||+++|++++ +++ ..|++++.+|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~--~~~-------~~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLE--ILS-------MSFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEE--EEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceE--Eec-------ccHHHHHHHHHcCCCCccc
Confidence 4689999986 899999853 24789999999999999999997754 444 3499999999999999999
Q ss_pred eeeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcc
Q 011629 395 GDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFT 439 (481)
Q Consensus 395 ~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~ 439 (481)
+++++|++|++.++||.||+..+.++++++.+ .......+|+..+
T Consensus 80 ~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~~~~~~dl~g~~ 125 (243)
T 4h5g_A 80 AGISATDERKEVFDFSIPYYENKISFLVHKADVEKYKDLTSLESAN 125 (243)
T ss_dssp SSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTTCCSHHHHHTSE
T ss_pred ccccCChhHccEEEccCccccCcccccccccccccccccccCCCCE
Confidence 99999999999999999999999999998765 4455556665543
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.61 E-value=4.3e-16 Score=147.72 Aligned_cols=122 Identities=28% Similarity=0.476 Sum_probs=89.6
Q ss_pred CCCceEEEeecCCCCCcCcEEecC------CCCeEEeeeHHHHHHHHHHCCCcccEEEEeCC-CCC--C-CCCHHHHHHH
Q 011629 315 NNGRHLRIGVPSQVIYPEFVAQGK------GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG-DGH--N-SPKRFDLLRL 384 (481)
Q Consensus 315 ~~~~~l~v~~~~~~~~~p~~~~~~------~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~-~~~--~-~~~~~~~~~~ 384 (481)
.+.++|+|++.. ++||.+.+. ++|++.||++||+++|++++|+++++...+.+ .|. . +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 346789999984 599998762 27899999999999999999988555544311 111 1 4689999999
Q ss_pred HHcccccEEEeeeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcc
Q 011629 385 VSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFT 439 (481)
Q Consensus 385 l~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~ 439 (481)
|.+|++|++++++++|++|++.++||.||+..+.+++++++. ...+++.++.||+
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~ 142 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS 142 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc
Confidence 999999999988999999999999999999999999999876 4456777777775
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.56 E-value=2e-15 Score=141.58 Aligned_cols=114 Identities=17% Similarity=0.290 Sum_probs=87.1
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCC------C----CCCHHHHHHHHH
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------N----SPKRFDLLRLVS 386 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~------~----~~~~~~~~~~l~ 386 (481)
.++++|++.. .++||.+.+. ++++.||++||+++||+++|+++++..+ .+++ . +.+|++++.+|.
T Consensus 40 ~~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~--~d~~~g~~~~~~~~~~~~w~~~~~~l~ 114 (292)
T 1pb7_A 40 KKVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLV--ADGKFGTQERVNNSNKKEWNGMMGELL 114 (292)
T ss_dssp CCEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEEC--TTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred cceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEe--cCCcccccccccccccCcHHHHHHHHH
Confidence 3688999886 8999988876 7899999999999999999988555443 3322 1 137999999999
Q ss_pred cccccEEEeeeeeccccccceeeccceeecceEEEEecCCCCcCcccccc
Q 011629 387 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLN 436 (481)
Q Consensus 387 ~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~ 436 (481)
+|++|++++++++|++|++.++||.||+..+.++++++++ ..+.+.+|+
T Consensus 115 ~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~-~i~~~~dl~ 163 (292)
T 1pb7_A 115 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT-RITGINDPR 163 (292)
T ss_dssp HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-CCCSTTCHH
T ss_pred cCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-CCCCCcCcc
Confidence 9999999999999999999999999999999999999876 344444443
No 40
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.55 E-value=3.7e-15 Score=137.19 Aligned_cols=119 Identities=25% Similarity=0.380 Sum_probs=98.4
Q ss_pred CceEEEeecCCCCCcCcEEecCC------CCeEEeeeHHHHHHHHHHCCCcccEEEEeCC-CCC---CCCCHHHHHHHHH
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKG------TDKFSGYCIDVFTAVLELLPYAVPYKLVPFG-DGH---NSPKRFDLLRLVS 386 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~ 386 (481)
+++|+|++.. ++||.+.++. +|++.||++||+++|++++|+++++..++.+ .+. .+.+|.+++.+|.
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 4689999984 5899998753 4899999999999999999988666665421 111 1358999999999
Q ss_pred cccccEEEeeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcc
Q 011629 387 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 439 (481)
Q Consensus 387 ~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~ 439 (481)
+|++|++++++++|++|++.++||.||+..+.++++++++ .+..+.+|+...
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~-~i~~~~dL~g~~ 131 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT-PIDSADDLAKQT 131 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS-SCCSHHHHHTCS
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc-cccCHHHhccCC
Confidence 9999999988999999999999999999999999999877 456677776543
No 41
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.52 E-value=9.8e-15 Score=134.64 Aligned_cols=119 Identities=16% Similarity=0.333 Sum_probs=95.7
Q ss_pred CceEEEeecCCCCCcCcEEecCC------CCeEEeeeHHHHHHHHHHCCCcccEEEEe---CCCCCCCC-CHHHHHHHHH
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKG------TDKFSGYCIDVFTAVLELLPYAVPYKLVP---FGDGHNSP-KRFDLLRLVS 386 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~ia~~l~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~ 386 (481)
+++|+|++. ++|||.+.+++ +|++.||++||+++|++++|+++++...+ +|....+. +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 467999997 58999998752 38999999999999999999775554442 11111122 7999999999
Q ss_pred cccccEEEeeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcc
Q 011629 387 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 439 (481)
Q Consensus 387 ~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~ 439 (481)
+|++|++++++++|++|++.++||.||+..+.++++++++ .+..+.+|+..+
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~-~i~~~~dL~g~~ 131 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT-PIESAEDLSKQT 131 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-SCCSHHHHHTCS
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc-ccCCHHHHhccc
Confidence 9999999888999999999999999999999999999876 355566665544
No 42
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.51 E-value=2.2e-14 Score=130.04 Aligned_cols=110 Identities=22% Similarity=0.321 Sum_probs=97.7
Q ss_pred ceEEEeecCCCCCcCcEEe-cCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 318 RHLRIGVPSQVIYPEFVAQ-GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~-~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
++|+||+.. +++||.+. ++ +|++.|+++||++++++++|+++++...+ |.+++.+|.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEc
Confidence 689999986 79999999 65 89999999999999999999886665554 9999999999999999888
Q ss_pred eeeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
++.|++|++.++||.||+..+.++++++++. .....+|+..+.
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~dL~g~~i 113 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHGKKI 113 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTCS-CCSGGGGTTCEE
T ss_pred cccChhHhccceeeeeeeecceEEEEECCCC-CCCHHHhCCCEE
Confidence 9999999999999999999999999998774 677777776654
No 43
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.51 E-value=1.7e-14 Score=130.38 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=87.4
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeC
Confidence 3689999986 7999999876 7999999999999999999977555444 49999999999999998889
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
++.|++|++.++||.||+..+.++++++++
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 999999999999999999999999998765
No 44
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.50 E-value=4.5e-14 Score=126.71 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=95.3
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
++|+|++.. +++||.+.++ +|++.|+++|+++++++++|+++++... +|.+++.+|.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISNQ---------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEEC---------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEeC---------CHHHHHHHHhCCCCCEEEecC
Confidence 579999986 7999999876 8999999999999999999977555443 499999999999999998889
Q ss_pred eeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 398 AITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 398 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+.+++|.+.+.||.||+..+.++++++++.......+|+..+.
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~dL~g~~v 112 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLKGKII 112 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTSCCCCSTTTTTTCEE
T ss_pred cCCHhHHhheecccceeccceEEEEeCCCCCCCCHHHhCCCEE
Confidence 9999999999999999999999999988744356777776655
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.50 E-value=2e-14 Score=132.52 Aligned_cols=115 Identities=23% Similarity=0.322 Sum_probs=93.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCC-----CeEEeeeHHHHHHHHHHCCCcccEEEEeC---CCCCCCCCHHHHHHHHHcc
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGT-----DKFSGYCIDVFTAVLELLPYAVPYKLVPF---GDGHNSPKRFDLLRLVSEE 388 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~-----~~~~G~~~dl~~~ia~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g 388 (481)
+++|+|++.. +|||.+.++ + |++.|+++||+++|++++|+++++...+. |....+.+|++++.+|.+|
T Consensus 2 ~~~l~v~~~~---~pP~~~~~~-~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 2 GVVLRVVTVL---EEPFVMVSE-NVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCEEEEEECC---BTTTBEEEC-CSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CeEEEEEEec---cCCeEEEec-CCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 5689999984 599999875 4 89999999999999999997755544321 1111235799999999999
Q ss_pred cccEEEeeeeeccccccceeeccceeecceEEEEecCCCCcCcccccc
Q 011629 389 VYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLN 436 (481)
Q Consensus 389 ~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~ 436 (481)
++|++++++++|++|++.++||.||+..+.++++++++ .+....+|+
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~-~i~~~~dL~ 124 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT-SIQSLQDLS 124 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-CCCSHHHHH
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC-Cccchhhhh
Confidence 99999888999999999999999999999999999876 345555554
No 46
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.48 E-value=2.2e-14 Score=130.09 Aligned_cols=109 Identities=17% Similarity=0.309 Sum_probs=95.6
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++... +|.+++.+|.+|++|++++
T Consensus 13 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 80 (239)
T 3kbr_A 13 ESGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMS 80 (239)
T ss_dssp HHTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECS
T ss_pred hCCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEe
Confidence 34789999975 7999999886 8999999999999999999977555444 4999999999999999988
Q ss_pred eeeeccccccceeeccceeecceEEEEecCC-CCcCcccccc
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLN 436 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~ 436 (481)
+++.|++|++.++||.||+..+.++++++++ ..+..+.+|+
T Consensus 81 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 81 GISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp SCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred CCcCCHHHcCccccchHHhccCcEEEEECCcccccCCHHHhc
Confidence 8999999999999999999999999999875 3566677776
No 47
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.48 E-value=4.2e-14 Score=128.86 Aligned_cols=112 Identities=20% Similarity=0.305 Sum_probs=97.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++... .|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEec
Confidence 4689999986 8999999876 8999999999999999999977555444 49999999999999999888
Q ss_pred eeeccccccceeeccceeecceEEEEecCC-CCcCcccccc--Ccch
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLN--PFTP 440 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~--pf~~ 440 (481)
++.|++|.+.+.||.||+..+.++++++++ ..+..+.+|+ ..+.
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i 118 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTL 118 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEE
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcccccCCHHHhccCCcEE
Confidence 999999999999999999999999999885 4566777777 5544
No 48
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.47 E-value=1e-13 Score=127.54 Aligned_cols=114 Identities=21% Similarity=0.361 Sum_probs=99.0
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.++ +|++.|+++|+++++++++|+++ ++++ .+|.+++.+|.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKL--NITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEE--EEEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeE--EEEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 35789999986 7999999885 79999999999999999999774 4454 35999999999999999988
Q ss_pred eeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcchh
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFTPK 441 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~~~ 441 (481)
+++.|++|++.++||.||+..+..+++++++ ..+..+++|+..+..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~g~~v~ 141 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIG 141 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSGGGGGGSCEE
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCHHHhCCCEEE
Confidence 9999999999999999999999999998776 367778888776553
No 49
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.47 E-value=5.7e-14 Score=129.87 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=99.6
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++ +. ..|.+++.+|.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEW--QA-------IDWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEE--EE-------CCGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEE--EE-------CCHHHHHHHHHCCCCCEEEe
Confidence 34789999986 7999999886 8999999999999999999977544 44 24999999999999999988
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchhH
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKM 442 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~~ 442 (481)
+++.|++|++.+.||.||+..+.++++++++ .+..+.+|+..+..+
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~i~~~~dL~g~~i~v 132 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS-GIDSVAGMAGKTLGA 132 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-CCCSSGGGTTCCEEE
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-CCCCHHHhCCCEEEE
Confidence 8999999999999999999999999999887 677788888776543
No 50
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.46 E-value=4e-14 Score=132.87 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=83.4
Q ss_pred CCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCC----CCCCHHHHHHHHHcccccEEEeeeeeccccc
Q 011629 329 IYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSPKRFDLLRLVSEEVYDAAVGDFAITTERT 404 (481)
Q Consensus 329 ~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~ 404 (481)
+++||.+. +++.||++||+++|++++|+++ +++.+.+++ .+.+|++++.+|.+|++|++++++++|++|+
T Consensus 58 ~~~P~~~~----~~~~G~~vdll~~ia~~lg~~~--~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~ 131 (294)
T 2rc8_A 58 DTVPIKFK----KCCYGYCIDLLEQLAEDMNFDF--DLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS 131 (294)
T ss_dssp CCCCGGGE----EEEESHHHHHHHHHHHHHTEEE--EEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH
T ss_pred CCCCcccc----CCceEEhHHHHHHHHHHcCCcE--EEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHh
Confidence 56666554 2689999999999999999774 444333321 2467999999999999999998999999999
Q ss_pred cceeeccceeecceEEEEecCCCCcCcccccc
Q 011629 405 KMVDFTQPYIESGLVVVAPIKKLNSNAWAFLN 436 (481)
Q Consensus 405 ~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~ 436 (481)
+.++||.||+..+.+++++++...+..+.+|+
T Consensus 132 ~~~~fs~P~~~~~~~i~~~~~~~~i~~~~dL~ 163 (294)
T 2rc8_A 132 QVIDFTSPFFSTSLGILVRTRGTELSGIHDPK 163 (294)
T ss_dssp TTSEECSCSEEEEEEEEEETTSCCCCSTTCHH
T ss_pred ceEEEccchHhcceEEEEECCCCCcCChhhhh
Confidence 99999999999999999998764566666766
No 51
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.46 E-value=1.4e-13 Score=125.77 Aligned_cols=113 Identities=20% Similarity=0.348 Sum_probs=99.0
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
..++|+|++.. +++||.+.+ +|++.|+++||++++++++|+++++...+ |.+++.+|.+|++|++++
T Consensus 22 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEEe
Confidence 45789999986 799999984 79999999999999999999886666654 999999999999999888
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
+++.+++|++.+.||.||+..+.++++++++..+..+.+|+..+..
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~~i~ 134 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIA 134 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSSGGGTTSEEE
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCCCCcCChHHhCCCEEE
Confidence 8999999999999999999999999999887667778888876653
No 52
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.46 E-value=3.2e-14 Score=131.84 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=98.5
Q ss_pred CCceEEEeecCCCCCcCcEEecCCC---CeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccE
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGT---DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDA 392 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~---~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~ 392 (481)
+.++|+|++.. +++||.+.++ + |++.|+++|+++++++++|+++++... .|.+++.+|.+|++|+
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~ 86 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDA 86 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSE
T ss_pred cCCeEEEEECC--CCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCE
Confidence 34689999985 7999999875 5 899999999999999999977555544 4999999999999999
Q ss_pred EEeeeeeccccccceeeccceeecceEEEEecCCC-CcCccccccCcchh
Q 011629 393 AVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLNPFTPK 441 (481)
Q Consensus 393 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~~l~pf~~~ 441 (481)
++++++.|++|++.++||.||+..+.++++++++. .+..+.+|+..+..
T Consensus 87 ~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~~~dL~g~~i~ 136 (271)
T 2iee_A 87 AANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAA 136 (271)
T ss_dssp ECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTCEEE
T ss_pred EEeCCcCChhhccceEEeecceeCCeEEEEECCCCCCCCCHHHhCCCEEE
Confidence 98888999999999999999999999999998763 56777888876553
No 53
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.45 E-value=6.3e-14 Score=127.02 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=95.1
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWVAS---------DFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEEeC---------CHHHHHHHHhCCCCCEEEEC
Confidence 3689999965 8999999875 7899999999999999999977554443 59999999999999999888
Q ss_pred eeeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
++.|++|++.++||.||+..+.++++++++.....+.+|+..+.
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~dL~g~~v 114 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHV 114 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTCCCCSSHHHHTTCEE
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCCCCCCCHHHhCCCEE
Confidence 89999999999999999999999999987733335666665543
No 54
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.45 E-value=1.6e-13 Score=126.85 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=97.2
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++... .+|.+++.+|.+|++|+++
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 35789999975 7999999876 7999999999999999999977554433 3699999999999999975
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+++.+++|++.+.||.||+..+.+++++++...+....+|+..+.
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~~~dL~g~~i 142 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTV 142 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESSTTSCSSGGGCTTCEE
T ss_pred cccCChhhhcceEechhhccCceEEEEECCCCCCCCHHHHCCCEE
Confidence 799999999999999999999999999988656677777776544
No 55
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.44 E-value=2.5e-13 Score=122.52 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=99.5
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
..++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++++...+ |..++.+|.+|++|++ +
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLGA---------WSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeCC---------HHHHHHHHhCCCeeEE-E
Confidence 35689999975 7999999976 89999999999999999999886666544 9999999999999996 7
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchhH
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKM 442 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~~ 442 (481)
+++.+++|++.+.||.|++..+.++++++++.....+.+|+..+..+
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~i~~ 122 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVAL 122 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSCEEE
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCCCCCCCHHHhCCCEEEE
Confidence 79999999999999999999999999998876577788888776543
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.43 E-value=1.3e-13 Score=125.54 Aligned_cols=112 Identities=15% Similarity=0.267 Sum_probs=98.0
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCC-CcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLP-YAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
.++|+|++.. +++||.+. + +|++.|+++||++++++++| +++++... +|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEec
Confidence 4689999986 79999995 3 89999999999999999999 88655554 4999999999999999988
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
+++.+++|.+.+.||.||+..+.+++++++...+..+.+|+..+..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~~i~ 119 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGKSTE 119 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSGGGCTTCEEE
T ss_pred ccccChhhhhceeeccceecCceEEEEECCCCCCCCHHHhCCCEEE
Confidence 8999999999999999999999999999844467778888876553
No 57
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.43 E-value=2.1e-13 Score=123.81 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=96.5
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.++ +|++.|+++||++++++++|+++ ++++ .+|.+++.+|.+|++|++++
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 9 NSEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTL--DVRE-------FSFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEE--EEEE-------CCGGGHHHHHHTTSSSEECS
T ss_pred cCCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCce--EEEE-------cCHHHHHHHHhCCCcCEEEe
Confidence 35789999976 8999999876 89999999999999999999774 4454 35999999999999999988
Q ss_pred eeeeccccccceeecccee--ecceEEEEecCCCCcCccccccCcchh
Q 011629 396 DFAITTERTKMVDFTQPYI--ESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~--~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
+++.+++|.+.++| .||+ ..+.+++++++ ..+..+.+|+..+..
T Consensus 77 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~-~~i~~~~dL~g~~i~ 122 (242)
T 3del_B 77 GMSITPSRLKEILM-IPYYGEEIKHLVLVFKG-ENKHPLPLTQYRSVA 122 (242)
T ss_dssp SBBCCHHHHTTEEE-EEEEEEEESEEEEEEES-CCSCCCCGGGSSCEE
T ss_pred cCcCCHHHHhcccc-eeeeecCCceEEEEeCC-CCCCCHHHhCCCEEE
Confidence 89999999999999 9999 99999999987 466778888876654
No 58
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.42 E-value=2.9e-13 Score=121.97 Aligned_cols=112 Identities=29% Similarity=0.373 Sum_probs=93.4
Q ss_pred CceEEEeecCCCCCcCcEEe--cCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEE
Q 011629 317 GRHLRIGVPSQVIYPEFVAQ--GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 394 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~--~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 394 (481)
.++|+|++. +++||.+. ++ +|++.|+++|+++++++++|+++++... .+|.+++.+|.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEE
Confidence 468999997 58999998 54 7999999999999999999977554444 2599999999999999998
Q ss_pred eeeeeccccc--cceeeccceeecceEEEEecCCC-CcCccccccCcch
Q 011629 395 GDFAITTERT--KMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLNPFTP 440 (481)
Q Consensus 395 ~~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~~l~pf~~ 440 (481)
++++.+++|. +.+.||.||+..+.++++++++. .+..+.+|+..+.
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g~~v 119 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEV 119 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTTCEE
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCCCCCCCHHHhCCCeE
Confidence 8889999999 99999999999999999998763 5667778876654
No 59
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.42 E-value=1.9e-13 Score=127.56 Aligned_cols=110 Identities=22% Similarity=0.355 Sum_probs=86.2
Q ss_pred CCCceEEEeecCCCCCcCcEEecC---CCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCC----CCCCHHHHHHHHHc
Q 011629 315 NNGRHLRIGVPSQVIYPEFVAQGK---GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSPKRFDLLRLVSE 387 (481)
Q Consensus 315 ~~~~~l~v~~~~~~~~~p~~~~~~---~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ 387 (481)
.++++||||+...+.+++|..... +.+++.||++||++++++++|+++++... .++. .+.+|++++.+|.+
T Consensus 26 ~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~--~~~~~g~~~~~~~~~~~~~l~~ 103 (284)
T 2a5s_A 26 LTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLV--TNGKHGKKVNNVWNGMIGEVVY 103 (284)
T ss_dssp C-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEEC--CSSSSCCEETTEECHHHHHHHT
T ss_pred CCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEc--cCCccCcccCCCHHHHHHHHhc
Confidence 467888888876444555532211 02368999999999999999987555443 2221 24579999999999
Q ss_pred ccccEEEeeeeeccccccceeeccceeecceEEEEecCC
Q 011629 388 EVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 388 g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
|++|++++++++|++|++.++||.||+.++.+++++++.
T Consensus 104 g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 142 (284)
T 2a5s_A 104 QRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT 142 (284)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC
T ss_pred CCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc
Confidence 999999989999999999999999999999999999876
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.41 E-value=5.2e-13 Score=119.60 Aligned_cols=110 Identities=21% Similarity=0.333 Sum_probs=95.8
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
++|+|++.. +++||.+.+ +|++.|+++|+++++++++|+++++...+ |.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPMD---------FSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEECC---------HHHHHHHHhCCCCCEEEEcC
Confidence 579999986 899999987 48999999999999999999876665544 99999999999999998888
Q ss_pred eeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 398 AITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 398 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+.+++|.+.+.|+.||+..+.++++++++..+..+++|+..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~dL~g~~i 112 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVV 112 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSSTTTTTCEE
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCCCCCCCHHHhCCCEE
Confidence 9999999999999999999999999987655667777876654
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.41 E-value=3.6e-13 Score=121.05 Aligned_cols=110 Identities=25% Similarity=0.349 Sum_probs=95.4
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+|++.. +++||.+.++ +|++.|+++|+++++++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEec
Confidence 4689999975 8999999875 7899999999999999999977555443 49999999999999999877
Q ss_pred eeeccccccceeeccceeec-ceEEEEecCCCCcCccccccCcch
Q 011629 397 FAITTERTKMVDFTQPYIES-GLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~-~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
++.+++|.+.+.||.|++.. +.++++++++ .....+|+..+.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~--~~~~~dL~g~~v 115 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA--YHTFADLKGKKV 115 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS--CCSTGGGTTCEE
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC--CCCHHHHCCCEE
Confidence 89999999999999999999 9999999876 666777776654
No 62
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.39 E-value=3.8e-13 Score=123.34 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=96.4
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCc-ccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYA-VPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
.++|+|++. +++||.+.++ +|++.|+++||++++++++|++ +++... .|.+++.+|.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 468999996 6999999875 7899999999999999999976 555544 4999999999999999987
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCC-CcCcccccc---Ccchh
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLN---PFTPK 441 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~~l~---pf~~~ 441 (481)
+++.|++|++.++||.||+..+.++++++++. .+..+.+|+ ..+..
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~~~~g~~i~ 128 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIG 128 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEE
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCccCCCCHHHHhccCCceEE
Confidence 89999999999999999999999999998873 466777777 55543
No 63
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.35 E-value=3e-12 Score=121.94 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=148.3
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+..-|++++++++.+++||....+.|++.+++.|+.|...+.++.. +....+.+++..++++|++.+...
T Consensus 113 ~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~~~~~~~~~~~~~~dai~~~~~~~ 188 (327)
T 3ckm_A 113 ESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----ADVTYFVQENNSNTTALYAVASPT 188 (327)
T ss_dssp HHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----THHHHHHHHSCTTCCEEEECCCHH
T ss_pred HHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----chhhHHHHHhccCCcEEEEEcCHH
Confidence 4678888888999999999999999999999999999999999988888654 233556788888999999999999
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEee---ecCCchhHHHHHHHHhhhhccCCC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRM---YTQSSEEKRKFVTRWRHLTRRNTL 158 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~---~~~~~~~~~~f~~~~~~~~~~~~~ 158 (481)
++..+++++.++++. ..++.++.+....... .......+.|+..... .....+.+..|.+.|+..+.
T Consensus 189 ~~~~i~~q~~~~g~~---~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---- 258 (327)
T 3ckm_A 189 ELAEMKGYLTNIVPN---LAIYASSRASASATNT---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---- 258 (327)
T ss_dssp HHHHHHHHHTTTCTT---CEEEECGGGCCHHHHT---CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----
T ss_pred HHHHHHHHHHhhhcc---CCEEeeeccccccchh---cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----
Confidence 999999999887643 4566665543321110 0111123445444322 23456778888877765442
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceeeeE
Q 011629 159 NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPI 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG~v 238 (481)
..++.++.|||+.+++.+.+ +. .+....|.|++|.+
T Consensus 259 -----~~~~~AlgyDA~~l~~~l~~-~~--------------------------------------~~~~~~f~G~tG~i 294 (327)
T 3ckm_A 259 -----LMRLYAMGADAWLLINQFNE-LR--------------------------------------QVPGYRLSGLTGIL 294 (327)
T ss_dssp -----HHHHHHHHHHHHHHHHTHHH-HH--------------------------------------HSTTCCEEETTEEE
T ss_pred -----CCchHHHHHHHHHHHHHHHH-hc--------------------------------------CCCCCCceeceEEE
Confidence 22356789999887654332 21 11123688999999
Q ss_pred EEccCCCCCCCcEEEEEeecCceEEEEEee
Q 011629 239 KFTSDRDLINPAYEVINVIGTGSRRIGYWS 268 (481)
Q Consensus 239 ~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~ 268 (481)
+||++|+.. ....+.++++|++++|...+
T Consensus 295 ~fd~~G~~~-r~l~~~~~~~G~~vpv~d~~ 323 (327)
T 3ckm_A 295 SADTNCNVE-RDMTWYQYQDGAIVPVVDHH 323 (327)
T ss_dssp EECTTCBEE-EECEEEEEETTEEEECC---
T ss_pred EECCCCCCc-cccEEEEEECCEEEEccccc
Confidence 999999864 77888999999999987544
No 64
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.30 E-value=5.2e-12 Score=116.92 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=96.0
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 395 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~ 395 (481)
+.++|+|++.. +++||.+.+ +|++.|+++|+++++++++|++++ ++. ..|.+++.+|.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~--~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYE--LKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEE--EEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceE--EEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 45789999986 799999885 689999999999999999997754 444 24999999999999999988
Q ss_pred eeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 396 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 396 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+++.+++|.+.+.|+.||+..+.++++++++. +..+.+|+..+.
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~~~~dL~g~~i 150 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKGKTI 150 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTCC-CCSGGGGTTSCE
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCCC-CCCHHHhCCCeE
Confidence 88899999999999999999999999998774 667777776654
No 65
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.29 E-value=1.2e-11 Score=116.88 Aligned_cols=203 Identities=10% Similarity=0.029 Sum_probs=147.8
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++++.+..-|.+++++|+.+++||....+.|++.+++.|+.|+..+.++.. .|+...+++++ .++++|++.++..
T Consensus 111 ~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i~-~~pDaV~~~~~~~ 186 (325)
T 2h4a_A 111 ESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQENN-SNTTALYAVASPT 186 (325)
T ss_dssp HHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHST-TCCCEEEECCCHH
T ss_pred HHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhcC-CCCCEEEEeCCHH
Confidence 4677777778999999999999999999999999999999999988888753 38999999984 6799999998888
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEecccc--ccccCCccccccccccceeeEEEee---ecCCchhHHHHHHHHhhhhccC
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVTDWLS--SILDTDSQLHSEKMDDIQGVLTLRM---YTQSSEEKRKFVTRWRHLTRRN 156 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~---~~~~~~~~~~f~~~~~~~~~~~ 156 (481)
.+..+..++...+ .+-..+.++.|. +. ... ......++|+..... .....+.+++|.+.|+..+
T Consensus 187 ~~~~i~~~~~~~g---~~~pl~~~~~~~~~s~-~~~----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~--- 255 (325)
T 2h4a_A 187 ELAEXKGYLTNIV---PNLAIYASSRASASAT-NTN----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY--- 255 (325)
T ss_dssp HHHHHHHHHTTTC---TTCEEEECGGGCCHHH-HTC----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---
T ss_pred HHhhhhhhHhhcC---CCCCEEEeccccccCC-CCC----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---
Confidence 8877777766543 344566776665 22 110 222345677765431 2345567888887765432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCcccccccccCccHHHHHHHHhcccCceee
Q 011629 157 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG 236 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~v~f~g~sG 236 (481)
.+.+..+..|||+.+++. +.++.. +....|.|++|
T Consensus 256 ------~~~rl~AlgyDA~~l~~~-l~~l~~--------------------------------------~~~~~~~G~tG 290 (325)
T 2h4a_A 256 ------QLMRLYAMGADAWLLINQ-FNELRQ--------------------------------------VPGYRLSGLTG 290 (325)
T ss_dssp ------HHHHHHHHHHHHHHHHHT-HHHHHH--------------------------------------STTCCEEETTE
T ss_pred ------chHHHHHHHHHHHHHHHH-HHHHhh--------------------------------------CCCCeeccCce
Confidence 134457899999997654 333211 12246889999
Q ss_pred eEEEccCCCCCCCcEEEEEeecCceEEEE
Q 011629 237 PIKFTSDRDLINPAYEVINVIGTGSRRIG 265 (481)
Q Consensus 237 ~v~Fd~~Gd~~~~~y~I~~~~~~~~~~VG 265 (481)
.++||++|+.. -...+.++++++++.|-
T Consensus 291 ~l~~~~~g~~~-R~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 291 ILSADTNCNVE-RDMTWYQYQDGAIVPVV 318 (325)
T ss_dssp EEEECTTCBEE-EECEEEEEETTEEEECC
T ss_pred eEEECCCCeEE-EeechhhccCCeEEEee
Confidence 99999999874 77888888888877763
No 66
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.29 E-value=3.7e-12 Score=118.86 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=95.6
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHH----CC---CcccEEEEeCCCCCCCCCHHHHHHHHHccc
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLEL----LP---YAVPYKLVPFGDGHNSPKRFDLLRLVSEEV 389 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~----l~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 389 (481)
.++|+|++.. +++||.+.++ +|++.|+++|++++|++. +| ++ +++++ ..|..++.+|.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCC
Confidence 4689999985 7999999876 799999999999999976 57 55 55555 35999999999999
Q ss_pred ccEEEeeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 390 YDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 390 ~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
+|+++++++.+++|.+.++||.||+..+.++++++++ .+..+.+|+..+..
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-~i~sl~dL~g~~v~ 134 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-DIKDFADLKGKAVV 134 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-SCCSGGGGTTCEEE
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC-CCCCHHHcCCCEEE
Confidence 9999888899999999999999999999999999876 46677888766543
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.28 E-value=2.3e-12 Score=115.47 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=89.5
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
++|+|++. +++||.+. + +|++.|+++|+++++++++|+++++... ++|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999997 58999987 4 7899999999999999999977555444 2599999999999999998888
Q ss_pred eeccccccceeeccceeecceEEEEecCC---CCcCccccccCcch
Q 011629 398 AITTERTKMVDFTQPYIESGLVVVAPIKK---LNSNAWAFLNPFTP 440 (481)
Q Consensus 398 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~---~~~~~~~~l~pf~~ 440 (481)
+.+++|.+.+.|+.||+..+..+++++++ .....+.+|+..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~dL~g~~i 115 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVV 115 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----CCCCSGGGCTTCEE
T ss_pred ccCHHHHccceecccchhcceEEEEECCccccCCcCCHHHcCCCeE
Confidence 89999999999999999999999998875 24566777776654
No 68
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.24 E-value=1.1e-11 Score=114.03 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=96.8
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++++|++.. +++||.+.++ +|++.|+++|+++++++++|+++ ++.. .+|.+++.++.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQL--EVRE-------FAFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEE--EEEE-------CCGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeE--EEEe-------cCHHHHHHHHhCCCccEEeec
Confidence 4689999986 7899999876 89999999999999999999774 4444 359999999999999999888
Q ss_pred eeeccccccceeecccee--ecceEEEEecCCCCcCccccccCcchh
Q 011629 397 FAITTERTKMVDFTQPYI--ESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~--~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
++.+++|.+.++| .||+ ..+..+++++++..+....+|+..+..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~~dL~g~~i~ 143 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVLPLTQYSSVA 143 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCCCGGGSSCEE
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCCCCCCCHHHhCCCEEE
Confidence 9999999999999 9999 999999999885567778888776553
No 69
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.23 E-value=9.8e-12 Score=114.56 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=96.5
Q ss_pred CceEEEeecCCCCCcCcEE---ecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEE
Q 011629 317 GRHLRIGVPSQVIYPEFVA---QGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 393 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~---~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 393 (481)
.++++|++.. +++||.+ .++ +|++.|+++|+++++++++|+++++ +. .+|.+++.++.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~~-~g~~~G~~~dl~~~~~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVDG-KNQIVGSDIELAKAIATELGVELEL--SP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEETT-EEEEESHHHHHHHHHHHHHTCEEEE--EE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccCC-CCcEeeecHHHHHHHHHHHCCceEE--EE-------cCHHHHHHHHhCCCccEE
Confidence 3589999985 7999998 664 7899999999999999999977544 44 359999999999999999
Q ss_pred EeeeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcchh
Q 011629 394 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFTPK 441 (481)
Q Consensus 394 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~~~ 441 (481)
+++++.+++|.+.+.||.|++..+..+++++++ ..+..+.+|+..+..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g~~i~ 154 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQKKVG 154 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSGGGGC-CEEE
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCccccccCHHHhCCCeEE
Confidence 888999999999999999999999999999875 456778888766553
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.23 E-value=1.4e-11 Score=114.75 Aligned_cols=112 Identities=22% Similarity=0.321 Sum_probs=96.0
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+|++.. +++||.+.++ +|++.|+.+|+++++++++|++ ++++. ..|..++.+|.+|++|+++++
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~-------~~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKE-------TQWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCcCEEEec
Confidence 4689999985 6999999885 7899999999999999999977 45554 239999999999999999888
Q ss_pred eee-ccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 397 FAI-TTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 397 ~~~-t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
++. +++|.+.++|+.||+..+..+++++++ .+..+.+|+..+..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~-~i~s~~dL~G~~v~ 168 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS-NIKSIADIKGVKTA 168 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-SCCSGGGCTTSEEE
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-CCCCHHHhCCCEEE
Confidence 888 999999999999999999999999876 36667777766543
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.22 E-value=1.9e-11 Score=114.33 Aligned_cols=112 Identities=25% Similarity=0.329 Sum_probs=96.4
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEE
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 393 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 393 (481)
.++|+|++.. +++||.+.++ +|++.|+++|+++++++++ |+++++... .|.+++.+|.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 3579999975 7999999875 7999999999999999999 977555443 49999999999999999
Q ss_pred EeeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 394 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 394 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
+++++.+++|.+.+.|+.||+..+..+++++++ .+....+|+..+..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-~i~~~~dL~g~~i~ 157 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS-NITSVEDLKDKTLL 157 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-CCCSSGGGTTSEEE
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-CCCCHHHhCCCEEE
Confidence 877889999999999999999999999999876 56677888766543
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.21 E-value=1.5e-11 Score=115.05 Aligned_cols=111 Identities=27% Similarity=0.349 Sum_probs=96.5
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEE
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 394 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 394 (481)
++|+|++.. +++||.+.++ +|++.|+.+|+++++++++ |++ ++++. ..|..++.+|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 579999975 7999999875 7999999999999999999 966 55554 2499999999999999998
Q ss_pred eeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcchh
Q 011629 395 GDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 395 ~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
++++.+++|.+.++|+.||+..+.++++++++ .+..+.+|+..+..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~-~i~sl~dL~gk~v~ 168 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK-PITDMAQLKDQTLL 168 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS-CCCSGGGGTTSEEE
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC-CCCCHHHhCCCEEE
Confidence 88889999999999999999999999999877 56778888876554
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.14 E-value=6.1e-11 Score=108.47 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=94.3
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEE
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 393 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 393 (481)
.++|+|++.. +++||.+.+..+|++.|+++|+++++++++ |++ +++.. ..|.+++.+|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEE
Confidence 3579999976 789999986337899999999999999999 976 45554 348999999999999999
Q ss_pred EeeeeeccccccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 394 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 394 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
+++++.+++|.+.++|+.||+..+..++++++. ....+.+|+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~i~~~~dL~g~~i 151 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK-KYKSLADMKGANI 151 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-CCCSGGGCTTCEE
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-CCCCHHHhCCCEE
Confidence 887888999999999999999999999999876 3456677776543
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.82 E-value=6.4e-06 Score=72.40 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=63.3
Q ss_pred CCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccc------cccceeeccce
Q 011629 340 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE------RTKMVDFTQPY 413 (481)
Q Consensus 340 ~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~------r~~~~~fs~p~ 413 (481)
+-+++|+.--|.+.+. |+++++.++ ..+++++++|++|++|+++++++.+++ |+..++|+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~m--------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHM--------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEEC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEc--------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4567888888777773 766445444 259999999999999999999999999 99999999999
Q ss_pred eecceEEEEecCC
Q 011629 414 IESGLVVVAPIKK 426 (481)
Q Consensus 414 ~~~~~~~~~~~~~ 426 (481)
+.+.-.++++++.
T Consensus 96 Yv~~h~li~~~~~ 108 (231)
T 2ozz_A 96 YVGEHQLICRKGE 108 (231)
T ss_dssp SSCCEEEEEETTC
T ss_pred cccCeEEEEeCCC
Confidence 9777778887775
No 75
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=96.67 E-value=0.001 Score=62.01 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=67.6
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|+||+.. .++|+.+... -.+|++.|++++|.+ ++++.. .+|++++.+|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3589999986 6777655431 258999999999966 555542 579999999999999999754
Q ss_pred -eeeccc--cccceeecc-------ceeecceEEEEecCCCCcCccccc
Q 011629 397 -FAITTE--RTKMVDFTQ-------PYIESGLVVVAPIKKLNSNAWAFL 435 (481)
Q Consensus 397 -~~~t~~--r~~~~~fs~-------p~~~~~~~~~~~~~~~~~~~~~~l 435 (481)
.+.... |.....|+. |++ ..++++++++ .+..+.+|
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~--~~~lvv~~ds-~i~sl~DL 110 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGY--WSLLIANKDS-KIDSLEDM 110 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEE--EEEEEEETTC-SCCSHHHH
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcce--EEEEEEECCC-CCCCHHHH
Confidence 344333 333344543 333 2478888776 56677777
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=96.18 E-value=0.0029 Score=59.25 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=66.5
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEe-
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG- 395 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~- 395 (481)
.++|++|+.+ .++|..... . --+|++.|++++|.+ +++... .+|++++.+|.+|++|+++.
T Consensus 13 ~~~l~~Gv~p--~~~~~~~~~----~----~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~~ 74 (321)
T 3p7i_A 13 EKALNFGIIS--TESQQNLKP----Q----WTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWYG 74 (321)
T ss_dssp -CCEEEEECC--SSCHHHHHH----H----HHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CCcEEEEEec--CCCHHHHHH----H----HHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEEC
Confidence 4689999986 555544322 1 247999999999966 555542 57999999999999999975
Q ss_pred eeeecccc--ccceeecccee-----ecceEEEEecCCCCcCccccc
Q 011629 396 DFAITTER--TKMVDFTQPYI-----ESGLVVVAPIKKLNSNAWAFL 435 (481)
Q Consensus 396 ~~~~t~~r--~~~~~fs~p~~-----~~~~~~~~~~~~~~~~~~~~l 435 (481)
+.+++..| .....|..|+. ....++++++++ .+..+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds-~i~sl~DL 120 (321)
T 3p7i_A 75 NLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS-PINNLNDL 120 (321)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC-SCCSHHHH
T ss_pred hHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC-CCCCHHHH
Confidence 35555443 33344543321 113478888776 56677777
No 77
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=94.18 E-value=0.056 Score=49.75 Aligned_cols=93 Identities=11% Similarity=-0.028 Sum_probs=67.3
Q ss_pred CCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee-eeeccccc---cceeeccceee
Q 011629 340 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD-FAITTERT---KMVDFTQPYIE 415 (481)
Q Consensus 340 ~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~-~~~t~~r~---~~~~fs~p~~~ 415 (481)
+..+.|+.+.+.+.+.++.|++ +++... +....++.+|.+|++|+++++ ......|. ..+.++.++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 4566788899999999999966 555552 234589999999999999876 23333443 35666667777
Q ss_pred cceEEEEecCCCCcCccccccCcchh
Q 011629 416 SGLVVVAPIKKLNSNAWAFLNPFTPK 441 (481)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~pf~~~ 441 (481)
.+..+++++++ .+....+|+.-+..
T Consensus 86 ~~~~l~~~~~s-~i~s~~DL~Gk~i~ 110 (302)
T 3ix1_A 86 PLNHVMFLAEQ-DFDSPADLVGLTVG 110 (302)
T ss_dssp CCEEEEEEGGG-CCSSGGGGTTSEEE
T ss_pred CCEEEEEECCC-CCCChHHcCCCEEE
Confidence 78899998775 56778888766543
No 78
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=92.75 E-value=0.087 Score=48.56 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=62.2
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
++|+||... ..+|+.... ....+++++ |.+ +++... ..+..++.+|.+|++|+++++
T Consensus 3 ~~lrig~~~--~~~~~~~a~------------~~g~~~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~ 60 (308)
T 2x26_A 3 EALRIGYQK--GSIGMVLAK------------SHQLLEKRYPESK--ISWVEF------PAGPQMLEALNVGSIDLGSTG 60 (308)
T ss_dssp SEEEEEECT--TCHHHHHHH------------HTTHHHHHCTTSE--EEEEEC------SSHHHHHHHHHHTSCSEEEEC
T ss_pred eEEEEEccC--CchHHHHHH------------hcChHhHhcCCCc--eEEEEC------CCcHHHHHHHHCCCCCEEccc
Confidence 578888874 333332211 122366777 865 555542 235899999999999998765
Q ss_pred eeecccccc------ceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 397 FAITTERTK------MVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 397 ~~~t~~r~~------~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
.... .|.. .+.++.++...+..+++++++ .+....+|+.-+.
T Consensus 61 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~-~i~s~~dL~Gk~i 108 (308)
T 2x26_A 61 DIPP-IFAQAAGADLVYVGVEPPKPKAEVILVAENS-PIKTVADLKGHKV 108 (308)
T ss_dssp SHHH-HHHHHTTCCEEEEEEECCCGGGEEEEEETTC-SCCSGGGGTTSEE
T ss_pred CcHH-HHHHhcCCCeEEEEEecCCCCceEEEEeCCC-CCCCHHHcCCCEE
Confidence 4322 2221 456777777778899998765 4566777775544
No 79
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=92.55 E-value=0.1 Score=49.24 Aligned_cols=84 Identities=6% Similarity=-0.107 Sum_probs=58.7
Q ss_pred HHHHHHHHCCCcccEEE--EeCCCCCCCCCHHHHHHHHHcccccEEEeeeeec----cccccceeeccceeecceEEEEe
Q 011629 350 VFTAVLELLPYAVPYKL--VPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT----TERTKMVDFTQPYIESGLVVVAP 423 (481)
Q Consensus 350 l~~~ia~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~~~ 423 (481)
+.+.+++. |++ +++ ..+ .+++..++.+|.+|++|+++.+.... .++.....++.++...+..++++
T Consensus 35 l~~~~~~~-G~~--v~~~~~~~-----~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~ 106 (348)
T 3uif_A 35 FPEELRKQ-GIK--VEWVPAAM-----ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVP 106 (348)
T ss_dssp HHHHHHHT-TEE--EEEEEECT-----TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEE
T ss_pred HHHHHHhc-CCe--EEEEeccc-----CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEE
Confidence 45566666 855 555 442 13467799999999999998555443 45556666767778888899998
Q ss_pred cCCCCcCccccccCcchhH
Q 011629 424 IKKLNSNAWAFLNPFTPKM 442 (481)
Q Consensus 424 ~~~~~~~~~~~l~pf~~~~ 442 (481)
+++ .+....+|+.-+..+
T Consensus 107 ~~s-~i~s~~DLkGk~I~v 124 (348)
T 3uif_A 107 KNS-TAKSIKDLKGKKIAL 124 (348)
T ss_dssp TTC-CCCSGGGGTTSEEEE
T ss_pred CCC-CCCCHHHcCCCEEEe
Confidence 876 577788888665533
No 80
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=91.92 E-value=0.28 Score=45.77 Aligned_cols=79 Identities=15% Similarity=-0.005 Sum_probs=58.0
Q ss_pred HHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeec----cccccceeeccceeecceEEEEecCC-CC
Q 011629 354 VLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT----TERTKMVDFTQPYIESGLVVVAPIKK-LN 428 (481)
Q Consensus 354 ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~~~~~~-~~ 428 (481)
+.++.|++ +++.+. .++..++.+|.+|++|+++++.... .++.....++.++...+..+++++++ ..
T Consensus 58 ~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (346)
T 3qsl_A 58 FFKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPG 129 (346)
T ss_dssp HHHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTT
T ss_pred chHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccC
Confidence 34677866 555542 5699999999999999998766544 45667777877777778888888765 35
Q ss_pred cCccccccCcch
Q 011629 429 SNAWAFLNPFTP 440 (481)
Q Consensus 429 ~~~~~~l~pf~~ 440 (481)
+..+.+|+.-+.
T Consensus 130 i~s~~DL~Gk~i 141 (346)
T 3qsl_A 130 YKGPADLKGRKI 141 (346)
T ss_dssp CCSGGGGTTCEE
T ss_pred CCChHHcCCCEE
Confidence 777888876544
No 81
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=91.57 E-value=0.56 Score=43.66 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=70.3
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHH----CCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccE
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLEL----LPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDA 392 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~ 392 (481)
.+.|++++.. . .|.+..+...|.+.+.+. .|++ ++..+. +...+.+..|.+|++|+
T Consensus 31 ~~~i~i~~g~-----------~-gG~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~------~g~~~~i~~l~~g~~D~ 90 (327)
T 4ddd_A 31 REYILIGTGS-----------M-TGVYYPIGGSICRFIASDYGKDNKII--CSISST------TGSVYNLNSIRYSNMDI 90 (327)
T ss_dssp CEEEEEECCC-----------T-TSSHHHHHHHHHHHHHHHHGGGTSEE--EEEECC------CCHHHHHHHHHTTSCSE
T ss_pred CeEEEEEeCC-----------C-CCHHHHHHHHHHHHHHhccCCCCCeE--EEEEec------CcHHHHHHHHHcCCCcE
Confidence 3567777752 1 455666677888888887 6755 555541 45678899999999999
Q ss_pred EEeeeeecc-c-----------cccceeeccceeecceEEEEecCCCCcCccccccCcch
Q 011629 393 AVGDFAITT-E-----------RTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 440 (481)
Q Consensus 393 ~~~~~~~t~-~-----------r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~ 440 (481)
++....... . ..+.+.+..+++.....+++++++ .+..+.+|++-+.
T Consensus 91 ~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds-~i~sl~DL~gk~v 149 (327)
T 4ddd_A 91 SIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSS-NISVIDDIKGKRV 149 (327)
T ss_dssp EEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTS-SCCSGGGGTTSEE
T ss_pred EEECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCC-CCCCHHHhCCCEE
Confidence 977554321 1 123455556788888999998876 5677888876543
No 82
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=91.08 E-value=0.32 Score=45.11 Aligned_cols=104 Identities=15% Similarity=0.061 Sum_probs=62.3
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEE
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 394 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 394 (481)
+..+|+||... ...|+.... -...+.+.+ |++ +++... .++..++.+|.+|++|+++
T Consensus 27 ~~~~lrig~~~--~~~p~~~a~------------~~g~~~~~~~g~~--v~~~~~------~~~~~~~~al~~G~~D~~~ 84 (324)
T 3ksx_A 27 EPAQLRIGYQK--AVSSLVLAK------------QHRLLEQRFPRTK--ITWVEF------PAGPQLLEALNVGSIDLGG 84 (324)
T ss_dssp CCSEEEEEEET--TCHHHHHHH------------HHTHHHHHCTTSE--EEEEEE------SSHHHHHHHHHTTSCSEEE
T ss_pred CCCeEEEEecC--CchhHHHHH------------hhCHHHHhcCCCc--eEEEEC------CCHHHHHHHHHCCCCCEEe
Confidence 45789999875 333332211 112345555 766 455442 4688999999999999986
Q ss_pred eeeee-----ccccccceeeccceeecceEEEEecCCCCcCccccccCcchhH
Q 011629 395 GDFAI-----TTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKM 442 (481)
Q Consensus 395 ~~~~~-----t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~l~pf~~~~ 442 (481)
.+... ...+.-.+..+.++...+..+++++++ .+....+|+.-+..+
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s-~I~s~~DLkGk~i~v 136 (324)
T 3ksx_A 85 AGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS-ALRTVADLKGKRIAF 136 (324)
T ss_dssp EESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC-SCCSGGGGTTCEEEE
T ss_pred ecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC-CCCCHHHhCCCEEEe
Confidence 54321 112222233333444457888998766 577788888665544
No 83
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=90.52 E-value=1.2 Score=39.22 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=61.1
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC-------CChhHHHHHHHH-h-ccCCce
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLT-V-SSMMSR 72 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~~~~~~l~~-i-~~s~~~ 72 (481)
.|+++-++..|=++|+++.. |.......+++.+++.|+.|......... .+.+.+...+++ + ...+++
T Consensus 106 ~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ad 182 (240)
T 3ixl_A 106 TAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSD 182 (240)
T ss_dssp HHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCC
Confidence 57888899999999999984 66666788889999999998765544321 133456677778 7 777899
Q ss_pred EEEEEeCcHHHHHHHH
Q 011629 73 ILILHTYDIWGLEVLN 88 (481)
Q Consensus 73 vIvl~~~~~~~~~il~ 88 (481)
.||+.|..-....++.
T Consensus 183 aivL~CT~l~~l~~i~ 198 (240)
T 3ixl_A 183 GILLSSGGLLTLDAIP 198 (240)
T ss_dssp EEEEECTTSCCTTHHH
T ss_pred EEEEeCCCCchhhhHH
Confidence 9999887544333333
No 84
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=89.84 E-value=0.23 Score=46.49 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc-ccccceeeccce--eecceEEEEecCCCCcCcc
Q 011629 356 ELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-ERTKMVDFTQPY--IESGLVVVAPIKKLNSNAW 432 (481)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~-~r~~~~~fs~p~--~~~~~~~~~~~~~~~~~~~ 432 (481)
++.|++ +++... .+|..++.+|.+|++|+++.+.+... .|.+..++.... ...+..+++++++ .+...
T Consensus 78 ~~~G~~--Ve~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s-~I~s~ 148 (341)
T 3un6_A 78 NHPKYK--LELVKF------NNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM-HLNEF 148 (341)
T ss_dssp SSCSSE--EEEEEC------SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC-CGGGC
T ss_pred HHcCCc--EEEEEc------CCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC-CCCCH
Confidence 556755 666653 46999999999999999987765443 344444443222 2467788888765 56677
Q ss_pred ccc-cCcch
Q 011629 433 AFL-NPFTP 440 (481)
Q Consensus 433 ~~l-~pf~~ 440 (481)
.+| +.-+.
T Consensus 149 ~DL~kGk~i 157 (341)
T 3un6_A 149 NNNGDDYHF 157 (341)
T ss_dssp CSSSSCEEE
T ss_pred HHhCCCCEE
Confidence 777 64433
No 85
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=89.52 E-value=2 Score=38.77 Aligned_cols=101 Identities=7% Similarity=-0.037 Sum_probs=65.7
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC--ceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~--~~vIvl~~~ 79 (481)
+++.|...|-++++++...... .....+.+++.+++.|+.+.....+....+.++....++++-+.. .+. |++.+
T Consensus 118 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 196 (288)
T 3gv0_A 118 AVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDG-IVSIS 196 (288)
T ss_dssp HHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSE-EEESC
T ss_pred HHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcE-EEEcC
Confidence 4455555699999999865432 456688889999999987654332333333344445566655433 344 44566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++..+.+.|+..++-+-|++
T Consensus 197 d~~A~g~~~al~~~g~~vP~di~vig 222 (288)
T 3gv0_A 197 GSSTIALVAGFEAAGVKIGEDVDIVS 222 (288)
T ss_dssp HHHHHHHHHHHHTTTCCTTTSCEEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 67788899999999987665555443
No 86
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=89.01 E-value=1.1 Score=40.07 Aligned_cols=101 Identities=15% Similarity=0.028 Sum_probs=62.1
Q ss_pred hHHHHHHcCCcEEEEEEEeC-C-----ccc-chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEE
Q 011629 4 IADIVDYFGWRNVIALYVDD-D-----HGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRIL 74 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd-~-----~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vI 74 (481)
+++.|...|-++|+++.... . ... ...+.+++.+++.|+.+.....+....+.++....++++.+. .++.|
T Consensus 105 a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 184 (276)
T 2h0a_A 105 AGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNV 184 (276)
T ss_dssp HHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEE
Confidence 34445456999999998654 3 345 667889999999997643211111112333334455555443 34544
Q ss_pred EEEeCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 75 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 75 vl~~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+ +++...+..++.++.+.|+..++.+-|++
T Consensus 185 ~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 185 F-AGADQVALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp E-CSSHHHHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred E-ECCcHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 4 56667788889999999987666665554
No 87
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=88.72 E-value=2.3 Score=37.82 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=62.3
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~ 79 (481)
+++.|...|-++|+++..... ......+.+++.++++|+.+.....+....+.++....++++-+. ..+. |++.+
T Consensus 111 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 189 (275)
T 3d8u_A 111 CTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNA-LVCSH 189 (275)
T ss_dssp HHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCE-EEESS
T ss_pred HHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCE-EEEcC
Confidence 344444459999999986543 345667888999999997643322222222333344445554333 3444 44556
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++.+-|++
T Consensus 190 d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 190 EEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 66788889999999987665555544
No 88
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=88.12 E-value=1.6 Score=41.52 Aligned_cols=86 Identities=8% Similarity=0.011 Sum_probs=61.5
Q ss_pred hHHHHHHcCCcEEEEEEEeCCccc--chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~- 80 (481)
+.++++.+|.+++.||++...... +..+.+.+.|++.|+.+.....+..+.+.+...+.++.+++.++++||..+..
T Consensus 24 l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 103 (387)
T 3bfj_A 24 VGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGS 103 (387)
T ss_dssp HHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456788889999999886554444 36899999999999987544445555566678888888888889999987653
Q ss_pred -HHHHHHHHH
Q 011629 81 -IWGLEVLNA 89 (481)
Q Consensus 81 -~~~~~il~~ 89 (481)
-++..++..
T Consensus 104 v~D~aK~iA~ 113 (387)
T 3bfj_A 104 PHDCGKGIGI 113 (387)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 344454444
No 89
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=87.88 E-value=0.88 Score=43.35 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=63.2
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
+.++++.+|.+++.||++..-......+.+.+.|++.|+.+.....+..+.+.+...+.++.+++.++++||..+.. -
T Consensus 22 l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~ 101 (383)
T 3ox4_A 22 AIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPH 101 (383)
T ss_dssp HHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 44567788999999998654333335788999999999987555556666677778888888888889999988764 3
Q ss_pred HHHHHHHHHH
Q 011629 82 WGLEVLNAAK 91 (481)
Q Consensus 82 ~~~~il~~a~ 91 (481)
++..++....
T Consensus 102 D~aK~ia~~~ 111 (383)
T 3ox4_A 102 DCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445544433
No 90
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=87.59 E-value=1.1 Score=40.49 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=62.1
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~ 79 (481)
+++.|...|.++|++|..+.. .+....+.+.+.++++|+.+.....+....+.++....++++.+. .++.| ++.+
T Consensus 130 a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~ 208 (296)
T 3brq_A 130 AVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSAL-VASN 208 (296)
T ss_dssp HHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEE-EESS
T ss_pred HHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEE-EECC
Confidence 344444559999999986533 345667888999999997654221222222333334455555332 34544 4556
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++.+-|++
T Consensus 209 d~~a~g~~~al~~~g~~vP~di~vvg 234 (296)
T 3brq_A 209 DDMAIGAMKALHERGVAVPEQVSVIG 234 (296)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTCEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 66788889999999987665554443
No 91
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=87.25 E-value=0.73 Score=42.60 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHCCCcccEEEEeCCCCCCCCCH-HHHHHHHHcccccEEEeeee-ecccccccee-ec--cceeecc--eEEEEe
Q 011629 351 FTAVLELLPYAVPYKLVPFGDGHNSPKR-FDLLRLVSEEVYDAAVGDFA-ITTERTKMVD-FT--QPYIESG--LVVVAP 423 (481)
Q Consensus 351 ~~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~d~~~~~~~-~t~~r~~~~~-fs--~p~~~~~--~~~~~~ 423 (481)
-+-+.++.|++ +++.+. ... ..++.+|.+|++|+++++.+ ....|.+..+ |. .++...+ ..++++
T Consensus 35 ~~G~~~~~Gl~--V~~~~~------~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~ 106 (321)
T 2x7q_A 35 QQGYYKAHDLS--IEFVKV------PEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTG 106 (321)
T ss_dssp HTTHHHHTTCC--EEEEEC------TTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEE
T ss_pred HCCcHHHCCce--EEEEEC------CCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEEC
Confidence 33455677866 555542 123 34899999999999987653 3345544443 43 3455555 367787
Q ss_pred cCCCCcCccccc
Q 011629 424 IKKLNSNAWAFL 435 (481)
Q Consensus 424 ~~~~~~~~~~~l 435 (481)
+++..+....+|
T Consensus 107 ~ds~~i~s~~DL 118 (321)
T 2x7q_A 107 SNRDDVTDAKQL 118 (321)
T ss_dssp SSCTTCSSGGGC
T ss_pred CCCCCCCChHHc
Confidence 765345666666
No 92
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=87.25 E-value=1.3 Score=39.81 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=65.1
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCc
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYD 80 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~ 80 (481)
.+++.|...|-++++++...........+.+.+.+++.|+.+.... +....+.+.....++++-+. ..+. |++.+.
T Consensus 108 ~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d 185 (280)
T 3gyb_A 108 IATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTA-IFSSND 185 (280)
T ss_dssp HHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCE-EEESSH
T ss_pred HHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCE-EEECCh
Confidence 3455555569999999997654456678888999999998765433 33233333344444444332 3444 445666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.++|+..++.+-|++
T Consensus 186 ~~a~g~~~al~~~g~~vP~di~vvg 210 (280)
T 3gyb_A 186 ITAIGALGAARELGLRVPEDLSIIG 210 (280)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCeeEEEE
Confidence 7788899999999987665554443
No 93
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=87.11 E-value=1.6 Score=39.35 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=60.4
Q ss_pred hHHHHHHcCCcEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~ 79 (481)
+++.|...|-++|+++..+. .......+.+++.++++|+.+.....+....+.++....++++.+. .++.| ++.+
T Consensus 117 ~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~ 195 (289)
T 1dbq_A 117 AGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAV-FCGG 195 (289)
T ss_dssp HHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEE-EESC
T ss_pred HHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEE-EECC
Confidence 44445455999999998543 3456678889999999997653221222222333334455554432 34444 4556
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++.+-|++
T Consensus 196 d~~a~g~~~al~~~G~~vP~di~vvg 221 (289)
T 1dbq_A 196 DIMAMGALCAADEMGLRVPQDVSLIG 221 (289)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 67788889999999987665554443
No 94
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=85.89 E-value=2.1 Score=38.51 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=63.9
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC--ceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~--~~vIvl~~~ 79 (481)
+++.|..-|-++++++..... ......+.+.+.+++.|+.+.....+....+.++....++++-+.. .+. |++.+
T Consensus 118 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 196 (289)
T 3g85_A 118 ASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKA-LFCNS 196 (289)
T ss_dssp HHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSE-EEESS
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcE-EEEcC
Confidence 445555569999999986543 2446688899999999986532211222223334445555554433 444 44566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++.+-|++
T Consensus 197 d~~a~g~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 197 DSIALGVISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 67788899999999987766555544
No 95
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=85.22 E-value=2.2 Score=38.46 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=63.0
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~ 79 (481)
+++.|...|-++|+++..... ......+.+.+.+++.|+.+.....+....+.+.....++++-+. .++. |++.+
T Consensus 122 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 200 (292)
T 3k4h_A 122 VAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTA-IMATD 200 (292)
T ss_dssp HHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSE-EEESS
T ss_pred HHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcE-EEEcC
Confidence 445555569999999986543 244567888999999998653221122222333444555555443 3444 44566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++..+.++|+..++-+-|++
T Consensus 201 d~~a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 201 DLIGLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred hHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 67788899999999987665554443
No 96
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=85.03 E-value=5 Score=36.18 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-----CCceEEEEE
Q 011629 5 ADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILH 77 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-----s~~~vIvl~ 77 (481)
++.|...|-++++++...... .....+.+++.++++|+.+.... ...+.++....++++.+ ..... |++
T Consensus 123 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a-i~~ 198 (295)
T 3hcw_A 123 TRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIE---TSNEREVILNYMQNLHTRLKDPNIKQA-IIS 198 (295)
T ss_dssp HHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEE---ECSCHHHHHHHHHHHHHHHTCTTSCEE-EEE
T ss_pred HHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEe---ccCCHHHHHHHHHHHHhhcccCCCCcE-EEE
Confidence 444444699999999965433 44668889999999999876221 12233333333433322 13444 445
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+...+..+++++.++|+..++-+-|+.
T Consensus 199 ~~d~~A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 199 LDAMLHLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTEEEEE
T ss_pred CChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 6666788899999999987776555544
No 97
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=84.07 E-value=1.5 Score=41.71 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=62.3
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC--cH
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DI 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~--~~ 81 (481)
+.++++.+|.+++.+|++.........+.+.+.|++.|+.+.....+..+.+.+...+.++.+++.++++||..+. .-
T Consensus 22 l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 101 (386)
T 1rrm_A 22 LTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQ 101 (386)
T ss_dssp HHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 4567788898999888854433334688899999999998764444555566677888888888888899997765 34
Q ss_pred HHHHHHHHHH
Q 011629 82 WGLEVLNAAK 91 (481)
Q Consensus 82 ~~~~il~~a~ 91 (481)
++..++....
T Consensus 102 D~aK~iA~~~ 111 (386)
T 1rrm_A 102 DTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 98
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=83.76 E-value=2.5 Score=38.14 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=61.5
Q ss_pred hHHHHHHcCCcEEEEEEEeC-C--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEe
Q 011629 4 IADIVDYFGWRNVIALYVDD-D--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHT 78 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd-~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~ 78 (481)
+++.|...|-++|++|.... + ......+.+++.+++.|+.+.....+....+.++-...++++-+. .++. |++.
T Consensus 124 a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~ 202 (289)
T 2fep_A 124 AVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTA-ILSA 202 (289)
T ss_dssp HHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSE-EEES
T ss_pred HHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCE-EEEC
Confidence 34445556999999998654 2 345678889999999997643211111122333334555555443 3444 4456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
+...+..++.++.+.|+..++.+-|+
T Consensus 203 ~d~~A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 203 TDEMALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 66678888999999998766554444
No 99
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=83.66 E-value=4 Score=38.53 Aligned_cols=84 Identities=8% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEEEEeCCccc-chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 5 ADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
.++++.+| +++.+|++...... ...+.+.+.|++.|+.+.....+..+.+.+...+.++.+++.++++||..+.. -
T Consensus 33 ~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 111 (371)
T 1o2d_A 33 GNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPM 111 (371)
T ss_dssp GGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHH
T ss_pred HHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 34566678 99999986544332 35788999999999987544455556666778888889988889999987653 3
Q ss_pred HHHHHHHH
Q 011629 82 WGLEVLNA 89 (481)
Q Consensus 82 ~~~~il~~ 89 (481)
++..++..
T Consensus 112 D~AK~iA~ 119 (371)
T 1o2d_A 112 DFAKAVAV 119 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 100
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=83.62 E-value=3.2 Score=39.75 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=59.5
Q ss_pred hHHHHHHcCCcEEEEEEEeCCccc-chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-- 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-- 80 (481)
+.++++.+|.+++.||+++..... ...+.+.+.|++.|+.+.....+..+.+.+...+.++.+++.++++||..+..
T Consensus 34 l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 113 (407)
T 1vlj_A 34 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSV 113 (407)
T ss_dssp HHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhH
Confidence 456788889999999985343222 35788899999999887533333344566678888888888889999987653
Q ss_pred HHHHHHHHH
Q 011629 81 IWGLEVLNA 89 (481)
Q Consensus 81 ~~~~~il~~ 89 (481)
-++..++..
T Consensus 114 iD~AK~iA~ 122 (407)
T 1vlj_A 114 VDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 101
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=83.23 E-value=7.8 Score=34.41 Aligned_cols=98 Identities=9% Similarity=0.006 Sum_probs=61.9
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC---CceEEEEEe
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHT 78 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s---~~~vIvl~~ 78 (481)
+++.|...|-++|+++..+.. ......+.+++.+++.|+.+. . +....+.++....++++-+. ..+. |++.
T Consensus 109 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~a-i~~~ 184 (277)
T 3cs3_A 109 AIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVD-VFAF 184 (277)
T ss_dssp HHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEE-EEES
T ss_pred HHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcE-EEEc
Confidence 344444459999999986543 244567888889999998765 2 22222333344555555443 3444 4456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+...+..++.++.+.|+..++.+-|++
T Consensus 185 ~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 185 NDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp SHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred ChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 666778888888888877666666554
No 102
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=83.10 E-value=2.8 Score=37.77 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.1
Q ss_pred hHHHHHHcCCcEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~~ 80 (481)
+++.|...|-++|++|.... .......+.+++.+++.|+.+.....+....+.++....++++-+ ..++. |++.+.
T Consensus 116 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a-i~~~~d 194 (290)
T 3clk_A 116 ATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTG-IIAASD 194 (290)
T ss_dssp HHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSE-EEESSH
T ss_pred HHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcE-EEECCc
Confidence 44545556999999998542 345567888999999999765321112222233333444555543 33444 445566
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEE
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
..+..++.++.+.|+..++.+-|+
T Consensus 195 ~~a~g~~~al~~~g~~vP~di~vv 218 (290)
T 3clk_A 195 MTAIGILNQASSFGIEVPKDLSIV 218 (290)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEE
Confidence 678888999999998766554444
No 103
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=82.91 E-value=3.3 Score=37.36 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=62.0
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~ 79 (481)
+++.|...|-++++++...... .....+.+++.+++.|+.+.....+....+.+.....++++-+. .... |++++
T Consensus 117 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~n 195 (294)
T 3qk7_A 117 AVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTA-IITDC 195 (294)
T ss_dssp HHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSE-EEESS
T ss_pred HHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcE-EEECC
Confidence 3445555699999999876432 34568888999999997643111111122333333444444332 3444 45566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++-+-|+.
T Consensus 196 d~~A~g~~~al~~~G~~vP~di~vig 221 (294)
T 3qk7_A 196 NMLGDGVASALDKAGLLGGEGISLIA 221 (294)
T ss_dssp HHHHHHHHHHHHHTTCSSTTSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 67788899999999987766554443
No 104
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=82.86 E-value=3.5 Score=37.04 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=59.8
Q ss_pred HHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-C---CceEEEEEe
Q 011629 5 ADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-M---MSRILILHT 78 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s---~~~vIvl~~ 78 (481)
++.|...|-++|++|..... ......+.+++.+++.|+.+.....+....+.++-...++++-+ . .++. |++.
T Consensus 117 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-i~~~ 195 (287)
T 3bbl_A 117 VEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTA-IMTL 195 (287)
T ss_dssp HHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSE-EEES
T ss_pred HHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcE-EEEC
Confidence 34444459999999986533 34466788899999999764321111112233333445555543 3 3444 4456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
+...+..++.++.+.|+..++.+-|+
T Consensus 196 ~d~~a~g~~~al~~~G~~vP~di~vi 221 (287)
T 3bbl_A 196 NDTMAIGAMAAARERGLTIGTDLAII 221 (287)
T ss_dssp SHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred CcHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 66778888999999998766554444
No 105
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=81.97 E-value=5.3 Score=35.88 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=63.6
Q ss_pred hHHHHHHcCCcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~ 80 (481)
+++.|...|-++|+++..... ......+.+++.+++.|+.+... .+....+.+.....++++-+. .... |++++.
T Consensus 117 a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d 194 (289)
T 3k9c_A 117 AVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTA-VVAFND 194 (289)
T ss_dssp HHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSE-EEESSH
T ss_pred HHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCE-EEECCh
Confidence 344455569999999986543 34456788899999999874332 223333333444555555443 3343 455666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.+.|+..++-+-|+.
T Consensus 195 ~~A~g~~~al~~~g~~vP~di~vig 219 (289)
T 3k9c_A 195 RCATGVLDLLVRSGRDVPADISVVG 219 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEE
Confidence 7788899999999987766555443
No 106
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=81.91 E-value=10 Score=33.87 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=54.6
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC-------CChhHHHHHHHHhccCCceEE
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSMMSRIL 74 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~~~~~~l~~i~~s~~~vI 74 (481)
.|+++-++..|=++|+++. .|.......+++.+++.|+.+......... .+.+.+...++++...++++|
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaI 211 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDAL 211 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEE
T ss_pred HHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEE
Confidence 4667777878889999996 344445568888999999987655444321 123446667777777789999
Q ss_pred EEE-eCcHH
Q 011629 75 ILH-TYDIW 82 (481)
Q Consensus 75 vl~-~~~~~ 82 (481)
|+. |..-.
T Consensus 212 vLg~CT~l~ 220 (273)
T 2xed_A 212 VISCAVQMP 220 (273)
T ss_dssp EEESSSSSC
T ss_pred EEcCCCCcc
Confidence 998 77543
No 107
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=81.63 E-value=2.7 Score=38.94 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=60.6
Q ss_pred HHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCc
Q 011629 5 ADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYD 80 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~ 80 (481)
++.|...|-++|++|..... ......+.+++.++++|+.+.....+....+.++-...++++-+. .++. |++.+.
T Consensus 169 ~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nd 247 (340)
T 1qpz_A 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA-VFCGGD 247 (340)
T ss_dssp HHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSE-EEESSH
T ss_pred HHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcE-EEECCH
Confidence 34344459999999985433 345667888999999997653221222222333334445554433 3444 445666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.+.|+..++-+-|+.
T Consensus 248 ~~A~g~~~al~~~G~~vP~disvig 272 (340)
T 1qpz_A 248 IMAMGALCAADEMGLRVPQDVSLIG 272 (340)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEe
Confidence 7788889999999987665554443
No 108
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=81.28 E-value=2.6 Score=39.08 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCc
Q 011629 5 ADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYD 80 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~ 80 (481)
++.|...|-+++++|....+ ......+.+.+.+++.|+.+.....+....+.+.-...++++-+. .+.. |++.+.
T Consensus 173 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nd 251 (338)
T 3dbi_A 173 VAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSA-LVASND 251 (338)
T ss_dssp HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSE-EEESSH
T ss_pred HHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeE-EEECCh
Confidence 44444569999999986433 344567888999999998654222222223333334445544332 3444 445666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.+.|+..++-+-|+.
T Consensus 252 ~~A~g~~~al~~~G~~vP~di~vvg 276 (338)
T 3dbi_A 252 DMAIGAMKALHERGVAVPEQVSVIG 276 (338)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 7788899999999987766555543
No 109
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=81.07 E-value=2.4 Score=40.35 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=49.4
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+.++++.+| +++.||++...+. ...+.+.+.|++ |+.+.+ ..+..+.+.+.+.+.++.+++.++++||..+..
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 456788899 9998888554443 367778888988 988844 345556666778888888888889999988764
No 110
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=80.91 E-value=5.1 Score=35.88 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=60.0
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHH--hccC--CceEEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT--VSSM--MSRILILH 77 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~--i~~s--~~~vIvl~ 77 (481)
+++.|...|-++|++|..... ......+.+++.+++.|+.+. ...- ..+.++....+++ +-+. .++. |++
T Consensus 115 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~a-i~~ 190 (285)
T 3c3k_A 115 VVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RISY--AENLDYMAGKLATFSLLKSAVKPDA-IFA 190 (285)
T ss_dssp HHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEEE--CSSSSHHHHHHHHHHHHSSSSCCSE-EEE
T ss_pred HHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-Eeec--CCChHHHHHHHHHHHHHcCCCCCeE-EEE
Confidence 344444459999999986543 344567788889999997654 1111 1122233444555 4333 3444 445
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+...+..++.++.+.|+..++.+-|+.
T Consensus 191 ~~d~~A~g~~~al~~~g~~vP~di~vvg 218 (285)
T 3c3k_A 191 ISDVLAAGAIQALTESGLSIPQDVAVVG 218 (285)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 6666788889999999987665555543
No 111
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=80.80 E-value=3.4 Score=37.06 Aligned_cols=101 Identities=14% Similarity=-0.020 Sum_probs=60.1
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEec--CCCC----ChhHHHHHHHHhccCCceEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPL--SPKG----SRNQIIDTLLTVSSMMSRILI 75 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~--~~~~----~~~~~~~~l~~i~~s~~~vIv 75 (481)
+++.|...|-++|+++..... ......+.+++.+++.|+.+.....+ .... +.++....++++.+..++.|+
T Consensus 113 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~ 192 (288)
T 2qu7_A 113 ATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIV 192 (288)
T ss_dssp HHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEE
Confidence 344455569999999986532 34566788889999999765321112 2122 222223334433322555544
Q ss_pred EEeCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 76 LHTYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 76 l~~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+.+...+..++.++.+.|+..++.+-|++
T Consensus 193 -~~~d~~a~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 193 -ATNHLLLLGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp -ECSHHHHHHHHHHHHHSSCCBTTTBEEEE
T ss_pred -ECCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 55666778889999999987665554443
No 112
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=80.79 E-value=2.5 Score=38.14 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=59.6
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~ 79 (481)
+++.|...|-++|++|..... ......+.+++.+++.|+.+.....+....+.++-...++++-+ ..++.|+ +++
T Consensus 119 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~ 197 (290)
T 2rgy_A 119 AAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CAN 197 (290)
T ss_dssp HHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESS
T ss_pred HHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECC
Confidence 344444559999999986533 34456778889999998754221111112222233334444332 2355544 566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
...+..++.++.+.|+..++.+-|+
T Consensus 198 d~~A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 198 DTMAVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEE
Confidence 6778888999999998766555444
No 113
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=79.94 E-value=2.6 Score=36.06 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHccc-ccEEEeeeeeccc---ccccee--eccceeecceEEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTE---RTKMVD--FTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d~~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~ 421 (481)
-++++.+.++.|.+ +++.. ++-..++..|.+|+ +|+++..-....+ +...+. -..|+....++++
T Consensus 15 ~~~~~~F~~~p~i~--v~~~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv 85 (231)
T 1atg_A 15 EQLAGQFAKQTGHA--VVISS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLW 85 (231)
T ss_dssp HHHHHHHHHHHCCC--EEEEE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEE
T ss_pred HHHHHHHHhccCCe--EEEEE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEE
Confidence 46777777777866 44443 34678999999998 9998653211111 112121 2468899999999
Q ss_pred EecCCCCcCccccc
Q 011629 422 APIKKLNSNAWAFL 435 (481)
Q Consensus 422 ~~~~~~~~~~~~~l 435 (481)
++++......+.+|
T Consensus 86 ~~~~~~~~~~~~dL 99 (231)
T 1atg_A 86 SAKPGLVDNQGKVL 99 (231)
T ss_dssp ESSTTTSCTTSGGG
T ss_pred EcCCCCCCcchhhh
Confidence 98766333334444
No 114
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=79.54 E-value=4.4 Score=36.70 Aligned_cols=101 Identities=11% Similarity=-0.029 Sum_probs=61.6
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHh-----ccCCceE-EE
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-----SSMMSRI-LI 75 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i-----~~s~~~v-Iv 75 (481)
+++.|...|-++++++..... ......+.+++.+++.|+.+..........+.+.-...++++ -+...++ .|
T Consensus 122 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai 201 (303)
T 3kke_A 122 ATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAV 201 (303)
T ss_dssp HHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEE
T ss_pred HHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEE
Confidence 344455569999999985443 344667888999999997653211111222333344455555 4333222 34
Q ss_pred EEeCcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 76 LHTYDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 76 l~~~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
++++...+..++.++.+.|+..++-+-|+
T Consensus 202 ~~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 202 VVASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp EESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 55666778889999999998766544444
No 115
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=79.02 E-value=7 Score=35.08 Aligned_cols=99 Identities=9% Similarity=-0.051 Sum_probs=60.8
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC--ceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~--~~vIvl~~~ 79 (481)
+++.|...|-++|++|..... ......+.+++.++++|+..... +....+.++-...++++-+.. ++. |++.+
T Consensus 129 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 205 (293)
T 2iks_A 129 LAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQA-LFTTS 205 (293)
T ss_dssp HHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSE-EEESS
T ss_pred HHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCE-EEECC
Confidence 344444459999999987533 34456788899999999743322 221223333445555554433 444 44556
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++.+-|+.
T Consensus 206 d~~a~g~~~al~~~g~~vP~di~vvg 231 (293)
T 2iks_A 206 FALLQGVMDVTLRRDGKLPSDLAIAT 231 (293)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 66788889998888877665555443
No 116
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=78.65 E-value=1.9 Score=39.86 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=60.4
Q ss_pred hHHHHHHcCCcEEEEEEEeC-C--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEe
Q 011629 4 IADIVDYFGWRNVIALYVDD-D--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHT 78 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd-~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~ 78 (481)
+++.|...|-++|++|.... + ......+.+++.+++.|+.+.....+....+.++-...++++-+. .++.| ++.
T Consensus 168 a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai-~~~ 246 (332)
T 2hsg_A 168 AVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAI-FVG 246 (332)
T ss_dssp HHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEE-EES
T ss_pred HHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEE-EEC
Confidence 34444445999999998654 2 345678889999999997643211111122323333445554333 34444 456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
+...+..++.++.+.|+..++-+-|+
T Consensus 247 nd~~A~g~~~al~~~G~~vP~disvv 272 (332)
T 2hsg_A 247 TDEMALGVIHGAQDRGLNVPNDLEII 272 (332)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHCEEE
T ss_pred ChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 66778889999999987655544444
No 117
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=78.60 E-value=2.7 Score=38.80 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=61.0
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++.|...|-++|++|..... ......+.+.+.++++|+.+.....+....+.++-...++++-+..+..| ++++..
T Consensus 171 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai-~~~~d~ 249 (332)
T 2o20_A 171 STKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSA-VVSHDT 249 (332)
T ss_dssp HHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEE-EESCHH
T ss_pred HHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEE-EECChH
Confidence 344444459999999986533 34456788889999999765321112222232233333444322255554 446666
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEe
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+..++.++.+.|+..++-+-|+.
T Consensus 250 ~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 250 VAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCccCEEEEE
Confidence 788899999999987666555543
No 118
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=77.96 E-value=3.1 Score=38.60 Aligned_cols=100 Identities=9% Similarity=0.006 Sum_probs=62.5
Q ss_pred HHHHHHcCCcEEEEEEEeC---CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhc-c-CCceEEEEEeC
Q 011629 5 ADIVDYFGWRNVIALYVDD---DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-S-MMSRILILHTY 79 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd---~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~-~-s~~~vIvl~~~ 79 (481)
++.|...|-+++++|.... .......+.+.+.++++|+.+.....+....+.+.-...++++- . ..+.. |++++
T Consensus 177 ~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~n 255 (344)
T 3kjx_A 177 AQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDF-LYYSN 255 (344)
T ss_dssp HHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCE-EEESS
T ss_pred HHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCE-EEECC
Confidence 4444445999999998653 23445678889999999987654333332333333333444332 2 23444 44667
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++-+-|+.
T Consensus 256 d~~A~g~~~al~~~g~~vP~disvvg 281 (344)
T 3kjx_A 256 DMIAAGGLLYLLEQGIDIPGQIGLAG 281 (344)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 77788899999999987766555553
No 119
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=77.65 E-value=7.3 Score=36.22 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=62.9
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc---ccchHHHHHHHHHhcCCEEEEEEecC-CCCChhHHHHHHHHhcc--CCceEEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDDH---GRNGIAALGDKLAEKRCRLSHKVPLS-PKGSRNQIIDTLLTVSS--MMSRILILH 77 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~---g~~~~~~l~~~l~~~gi~v~~~~~~~-~~~~~~~~~~~l~~i~~--s~~~vIvl~ 77 (481)
+++.|...|-+++++|...... .....+.+.+.++++|+.+.....+. ...+.+.-...++++-+ ..+.. |++
T Consensus 178 a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a-i~~ 256 (355)
T 3e3m_A 178 MTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDC-IFC 256 (355)
T ss_dssp HHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCE-EEE
T ss_pred HHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcE-EEE
Confidence 3444555699999999975432 45678889999999998754222222 12222333334444322 23444 456
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
++...+..++..+.+.|+..++-+-|+.
T Consensus 257 ~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 257 VSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp SSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred CChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 6677788899999999987766555543
No 120
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.14 E-value=2.8 Score=37.72 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=59.1
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~ 79 (481)
+++.|...|-++|+++..... ......+.+++.+++.|+.+..........+.+.....++++-+ ...+. |++.+
T Consensus 116 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~ 194 (291)
T 3egc_A 116 AVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTA-LLTSS 194 (291)
T ss_dssp HHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSE-EEESS
T ss_pred HHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcE-EEECC
Confidence 445555569999999986543 34466788889999998764321111111111122233333332 23444 44566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++-+-|++
T Consensus 195 d~~a~g~~~al~~~g~~vP~di~vvg 220 (291)
T 3egc_A 195 HRITEGAMQALNVLGLRYGPDVEIVS 220 (291)
T ss_dssp HHHHHHHHHHHHHHTCCBTTTBEEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 67788899999999987665555543
No 121
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=77.04 E-value=7.7 Score=36.26 Aligned_cols=82 Identities=9% Similarity=-0.035 Sum_probs=56.2
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
+.++++.+|.+++-+|++..... ...+.+.+.+++.|+.+......+ +.+.+...+. +.+++.+.++||..+.. -
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~ 101 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-NIDFDEIGTN-AFKIPAEVDALIGIGGGKAI 101 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-CCBHHHHHHH-HTTSCTTCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHH-HHhhhcCCCEEEEECChHHH
Confidence 45678888989999888554332 457888888999998875433233 3455667777 77888889999987653 3
Q ss_pred HHHHHHH
Q 011629 82 WGLEVLN 88 (481)
Q Consensus 82 ~~~~il~ 88 (481)
++..++.
T Consensus 102 D~aK~vA 108 (354)
T 3ce9_A 102 DAVKYMA 108 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 122
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=76.92 E-value=17 Score=32.54 Aligned_cols=101 Identities=11% Similarity=0.007 Sum_probs=59.0
Q ss_pred hHHHHHHc--CCcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeC
Q 011629 4 IADIVDYF--GWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTY 79 (481)
Q Consensus 4 i~~ll~~f--gW~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~ 79 (481)
+++.|... |-++|+++...+. ......+.+++.+++.|..+..........+.+.....++++-+...++ .|++.+
T Consensus 116 ~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 195 (305)
T 3g1w_A 116 AAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATE 195 (305)
T ss_dssp HHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred HHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECC
Confidence 44444445 8999999985432 2335577788889888776554433333333333444444443322333 344556
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+. .+...+.-
T Consensus 196 d~~a~g~~~al~~~g~~-~di~vig~ 220 (305)
T 3g1w_A 196 ANGGVGVGDAVRLESRA-GEIQIISF 220 (305)
T ss_dssp HHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred CcchhhHHHHHHhcCCC-CCeEEEEe
Confidence 66778889999998875 33344443
No 123
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=76.36 E-value=11 Score=32.37 Aligned_cols=78 Identities=5% Similarity=-0.093 Sum_probs=52.4
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC-------CChhHHHHHHHHhccC--Cce
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSM--MSR 72 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~~~~~~l~~i~~s--~~~ 72 (481)
.|+++-++..|=++|+++. .|.......+++.+++.|+.+......... .+.+.+...++++.+. +++
T Consensus 97 ~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gad 173 (223)
T 2dgd_A 97 ESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKAD 173 (223)
T ss_dssp HHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSS
T ss_pred HHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCC
Confidence 4667777878889999996 344455667788999999987655443321 1223455666666556 788
Q ss_pred EEEEEeCcHH
Q 011629 73 ILILHTYDIW 82 (481)
Q Consensus 73 vIvl~~~~~~ 82 (481)
.||+.|..-.
T Consensus 174 aIvLgCT~l~ 183 (223)
T 2dgd_A 174 AVYIACTALS 183 (223)
T ss_dssp EEEECCTTSC
T ss_pred EEEEeCCccc
Confidence 8888776543
No 124
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=75.89 E-value=9.2 Score=35.46 Aligned_cols=99 Identities=8% Similarity=0.017 Sum_probs=60.0
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
+++.|...|-++|++|..... ......+.+++.+++.|+..... +....+.++-...++++-+...- .|++++..
T Consensus 175 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-ai~~~nD~ 251 (348)
T 3bil_A 175 AVELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-TLFAGDSM 251 (348)
T ss_dssp HHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-EEEESSHH
T ss_pred HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-EEEEcChH
Confidence 344444469999999986533 24456788889999999732221 22222323333444444332222 55566667
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEe
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+..++.++.+.|+..++-+-|+.
T Consensus 252 ~A~g~~~al~~~G~~vP~disvvG 275 (348)
T 3bil_A 252 MTIGVIEACHKAGLVIGKDVSVIG 275 (348)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 788899999999987665555443
No 125
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=75.72 E-value=8.7 Score=31.64 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=48.1
Q ss_pred cEEEEEEEeCCccc---chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeCc
Q 011629 14 RNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~dd~~g~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~~ 80 (481)
-+|+||...|+.|+ .....|.+.+++.|+.+.....++. +.+.+...+++..+. ++++||..+-.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 47999998887764 4467888899999999888777764 344677777766554 58999887643
No 126
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=74.96 E-value=5.9 Score=35.06 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=55.1
Q ss_pred hHHHHHHc----CCcEEEEEEEeCC--cccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EE
Q 011629 4 IADIVDYF----GWRNVIALYVDDD--HGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LI 75 (481)
Q Consensus 4 i~~ll~~f----gW~~V~ii~~dd~--~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Iv 75 (481)
+++.|... |-++++++..... ......+.+++.+++. |+.+... .....+.+.....++++-+...++ .|
T Consensus 114 ~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai 191 (276)
T 3ksm_A 114 AARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGL 191 (276)
T ss_dssp HHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEE
T ss_pred HHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 34444444 8999999985432 3456788889999888 8876532 222233334444455443332332 23
Q ss_pred EEeCcHHHHHHHHHHHHcCC
Q 011629 76 LHTYDIWGLEVLNAAKHLRM 95 (481)
Q Consensus 76 l~~~~~~~~~il~~a~~~g~ 95 (481)
++.+...+..+++++.+.|+
T Consensus 192 ~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 192 FTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp ECCSHHHHHHHHHHHHHTTC
T ss_pred EECCchhhhHHHHHHHHcCC
Confidence 44555677788899999886
No 127
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=74.76 E-value=5.7 Score=37.42 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=56.3
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
+.++++.+| +++.+|++..... ...+.+.+.+++.|+.+.+ ..+....+.+.+....+.+++.++++||..+.. -
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 446677788 9999888544332 4578888899999998754 334444455567777888888889999987653 3
Q ss_pred HHHHHHH
Q 011629 82 WGLEVLN 88 (481)
Q Consensus 82 ~~~~il~ 88 (481)
++..++.
T Consensus 100 D~aK~iA 106 (370)
T 1jq5_A 100 DTAKAVA 106 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 128
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=74.56 E-value=3.9 Score=37.66 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=59.6
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~~ 80 (481)
+++.|...|-++|++|..... ......+.+++.++++|+.+. ...+....+.++-...++++.+ ..++. |++.+.
T Consensus 163 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~a-i~~~~d 240 (330)
T 3ctp_A 163 AFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDG-IFVFND 240 (330)
T ss_dssp HHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSE-EEESSH
T ss_pred HHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcE-EEECCH
Confidence 344444559999999986543 345667888999999998765 3333222222211122223322 23444 445566
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEE
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
..+..++.++.+.|+..++-+-|+
T Consensus 241 ~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 241 IAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEE
Confidence 678888999999998766555444
No 129
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=73.71 E-value=21 Score=31.94 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=56.3
Q ss_pred hHHHHHHc--CCcEEEEEEEeCCc-ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYF--GWRNVIALYVDDDH-GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~f--gW~~V~ii~~dd~~-g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
.+++|... |-+++++|+...+. +....+.+++.+++.|+.+....... .++....++++.. ++..|+. ++.
T Consensus 122 ~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~----~~~~~~~~~~l~~-~~dai~~-~~D 195 (295)
T 3lft_A 122 QVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS----TNEIASTVTVMTS-KVDAIWV-PID 195 (295)
T ss_dssp HHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS----GGGHHHHHHHHTT-TCSEEEE-CSC
T ss_pred HHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC----HHHHHHHHHHHHh-cCCEEEE-CCc
Confidence 34666666 99999999976542 45567888999999999876543321 2356667777764 4666544 444
Q ss_pred HHHHHHHHHHHHcC
Q 011629 81 IWGLEVLNAAKHLR 94 (481)
Q Consensus 81 ~~~~~il~~a~~~g 94 (481)
..+...+..+.+.+
T Consensus 196 ~~a~g~~~~l~~~~ 209 (295)
T 3lft_A 196 NTIASGFPTVVSSN 209 (295)
T ss_dssp HHHHHTHHHHHHHT
T ss_pred hhHHHHHHHHHHHH
Confidence 55555666666665
No 130
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=73.68 E-value=38 Score=32.26 Aligned_cols=93 Identities=17% Similarity=0.018 Sum_probs=58.2
Q ss_pred cEEEEEEEeCCccc--chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc------HHHHH
Q 011629 14 RNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD------IWGLE 85 (481)
Q Consensus 14 ~~V~ii~~dd~~g~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~------~~~~~ 85 (481)
+.|.|+| ++.||. ..++.+.+.+.+.|+.+..........+ +...++..+.+ ++.||+.+++ .....
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~--~~s~i~~~i~~--~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP--AISEILKDIPD--SEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC--CHHHHHHHSTT--CSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC--CHHHHHHHHHh--CCeEEEEeCCcCCcCCHHHHH
Confidence 3799999 556765 4578888999999998775544433322 56666777765 4666666554 34556
Q ss_pred HHHHHHHcCCccCCeEEEEecccccc
Q 011629 86 VLNAAKHLRMMESGYVWIVTDWLSSI 111 (481)
Q Consensus 86 il~~a~~~g~~~~~~~wI~~~~~~~~ 111 (481)
++.........++.-..+.+-+|...
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg~ 366 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAPS 366 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCCT
T ss_pred HHHHHHhcccCCCEEEEEECCCCCcH
Confidence 66666655543333345556677543
No 131
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=73.56 E-value=6.9 Score=34.91 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHcccccEEEeeeeeccccccceeec--cceee-cceEEEEecCC
Q 011629 376 PKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFT--QPYIE-SGLVVVAPIKK 426 (481)
Q Consensus 376 ~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~fs--~p~~~-~~~~~~~~~~~ 426 (481)
.++..+..+|.+|++|+++.+......+.+.+.+. .++.. ....+++++++
T Consensus 45 ~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~ 98 (280)
T 1zbm_A 45 EDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSE 98 (280)
T ss_dssp CCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESSC
T ss_pred CCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcCc
Confidence 46999999999999999976433333444445554 23333 33445666553
No 132
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=73.16 E-value=7.4 Score=35.87 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=60.3
Q ss_pred hHHHHHHcCCcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEE-EEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeC
Q 011629 4 IADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLS-HKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~-~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~ 79 (481)
+++.|...|-++++++..... ......+.+.+.++++|+... .........+.+.-...++++-+ ..+.. |++++
T Consensus 169 a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~n 247 (339)
T 3h5o_A 169 ITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDA-LFCCN 247 (339)
T ss_dssp HHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCE-EEESS
T ss_pred HHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcE-EEECC
Confidence 344444559999999986642 334567778889999987211 11111222233333344444432 23444 44566
Q ss_pred cHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 80 DIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
...+..++.++.+.|+..++-+-|+.
T Consensus 248 D~~A~g~~~al~~~G~~vP~disvvg 273 (339)
T 3h5o_A 248 DDLAIGALARSQQLGIAVPERLAIAG 273 (339)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred hHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 77788899999999987766555543
No 133
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=72.66 E-value=5.6 Score=34.77 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=50.5
Q ss_pred eeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccc---cceeeccceeecceEEE
Q 011629 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVVV 421 (481)
Q Consensus 345 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~ 421 (481)
|+--+|+.++.++.|.+ +.+.. ++-..++.++.+|.+|+.+..-....+.. ....-..+++...++++
T Consensus 19 ~ll~~L~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV 89 (236)
T 3lr1_A 19 GLLKVLLPPFEKKNNVK--VDVIA-------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIV 89 (236)
T ss_dssp CHHHHHHHHHHHHHTCE--EEEEE-------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEE
T ss_pred HHHHHHHHHHHHHhCCe--EEEEE-------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEE
Confidence 55667888888888866 44443 34778999999999999876433322211 11222468999999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
+|++.
T Consensus 90 ~P~~~ 94 (236)
T 3lr1_A 90 GPKND 94 (236)
T ss_dssp ECTTC
T ss_pred EECCC
Confidence 98876
No 134
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=72.51 E-value=12 Score=31.67 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=57.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-..++..+.++.- ++++++.. .+...+..+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~------------~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678888763 10 11344678888887773 35577765 567789999999999998753
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
. +.....+.+ .|.+...+.++++++.
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 222334555 6889999999998765
No 135
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=72.41 E-value=12 Score=33.00 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=61.4
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhc-cC--CceEEEEEe
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SM--MSRILILHT 78 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~-~s--~~~vIvl~~ 78 (481)
+++.|...|-++++++..... ......+.+++.+++.|+.+..... ...+.++....++++- .. ..+. |++.
T Consensus 111 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~a-i~~~ 187 (272)
T 3o74_A 111 LAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQG--EAFSRECGQRLMQQLIDDLGGLPDA-LVTT 187 (272)
T ss_dssp HHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEE--SSSSHHHHHHHHHHHHHHHTSCCSE-EEES
T ss_pred HHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeec--CCCCHHHHHHHHHHHHhcCCCCCcE-EEEe
Confidence 445555569999999987543 3446688889999999987654322 2223333334444433 22 3454 4456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+...+..++.++.+.|+ .++.+-|++
T Consensus 188 ~d~~a~g~~~al~~~g~-vp~di~vvg 213 (272)
T 3o74_A 188 SYVLLQGVFDTLQARPV-DSRQLQLGT 213 (272)
T ss_dssp SHHHHHHHHHHHHTSCG-GGCCCEEEE
T ss_pred CchHHHHHHHHHHHcCC-CccceEEEE
Confidence 66778889999999987 555444443
No 136
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=71.60 E-value=19 Score=32.43 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=55.1
Q ss_pred hHHHHHHc--CCcEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEE
Q 011629 4 IADIVDYF--GWRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILH 77 (481)
Q Consensus 4 i~~ll~~f--gW~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~ 77 (481)
+++.|... |-++|++|.... .......+.+++.+++.|+.+..... ...+.++....++++.+. ..+.| ++
T Consensus 112 a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai-~~ 188 (313)
T 2h3h_A 112 AGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILN--DEEDGARAVSLAEAALNAHPDLDAF-FG 188 (313)
T ss_dssp HHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE--CSSCHHHHHHHHHHHHHHCTTCCEE-EE
T ss_pred HHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeec--CCCCHHHHHHHHHHHHHHCcCceEE-EE
Confidence 34444444 899999998652 23456678889999999988764322 122333344455554432 33444 44
Q ss_pred eCcHHHHHHHHHHHHcC
Q 011629 78 TYDIWGLEVLNAAKHLR 94 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g 94 (481)
.+...+..+++++.+.|
T Consensus 189 ~~d~~a~g~~~al~~~G 205 (313)
T 2h3h_A 189 VYAYNGPAQALVVKNAG 205 (313)
T ss_dssp CSTTHHHHHHHHHHHTT
T ss_pred cCCCccHHHHHHHHHcC
Confidence 55667788888888888
No 137
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=71.35 E-value=19 Score=31.90 Aligned_cols=89 Identities=7% Similarity=0.027 Sum_probs=54.2
Q ss_pred HHHHHcC-CcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeCcH
Q 011629 6 DIVDYFG-WRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDI 81 (481)
Q Consensus 6 ~ll~~fg-W~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~~ 81 (481)
.|++..| -++|+++..... ......+.+++.+++.|..+... +....+.++....++++.+...++ .|++.+..
T Consensus 123 ~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 200 (289)
T 3brs_A 123 VTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMVGLNQY 200 (289)
T ss_dssp HHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH
T ss_pred HHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc
Confidence 3445457 999999986533 34566788889999988764332 222223333444455543322222 34455666
Q ss_pred HHHHHHHHHHHcCCc
Q 011629 82 WGLEVLNAAKHLRMM 96 (481)
Q Consensus 82 ~~~~il~~a~~~g~~ 96 (481)
.+..++.++.+.|+.
T Consensus 201 ~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 201 SATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHhcCCC
Confidence 778888888898875
No 138
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=71.04 E-value=20 Score=32.79 Aligned_cols=97 Identities=11% Similarity=-0.040 Sum_probs=61.0
Q ss_pred HHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeCcH
Q 011629 5 ADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYDI 81 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~~~ 81 (481)
++.|...|-++++++...... .....+.+.+.+++.|+. ..... ...+.++....++++-+. .++. |++++..
T Consensus 166 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~--~~~~~-~~~~~~~~~~~~~~ll~~~~~~a-i~~~nd~ 241 (333)
T 3jvd_A 166 TESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE--VTFHF-GHYSVESGEEMAQVVFNNGLPDA-LIVASPR 241 (333)
T ss_dssp HHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE--EEEEE-CCSSHHHHHHHHHHHHHTCCCSE-EEECCHH
T ss_pred HHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC--EEEec-CCCCHHHHHHHHHHHhcCCCCcE-EEECCHH
Confidence 344444699999999965432 446688889999999987 22111 122333344445544333 3343 4566667
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEe
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+..++.++.+.|+..++-+-|+.
T Consensus 242 ~A~g~~~al~~~G~~vP~disvig 265 (333)
T 3jvd_A 242 LMAGVMRAFTRLNVRVPHDVVIGG 265 (333)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEEE
Confidence 788899999999987766554443
No 139
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=70.54 E-value=18 Score=30.79 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=59.4
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|++|+.. .. ...+-..++..+.++.. ++++.+.. .+...++.+|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--YA------------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--HH------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4689999874 11 11344678888888863 35566666 567899999999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.+.....+.+ .++....+.++++++.
T Consensus 76 ---~~~~~~~~~~-~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 ---PTGPVEPLRS-EILGRVGVLCLLSKQH 101 (241)
T ss_dssp ---CSSCCTTEEE-EEEECCCEEEEEETTS
T ss_pred ---CCCCCcccee-EEeecccEEEEEeCCC
Confidence 2333444544 6888999999998765
No 140
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=70.48 E-value=17 Score=30.19 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=56.2
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
++|++|+.. .. ...+-.+++..+.++.. ++++++.. .+...+..+|.+|++|+++...
T Consensus 4 g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIF--TV------------APYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEET--TT------------HHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcc--hh------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 578888864 21 11234677888877762 24466665 4578999999999999997643
Q ss_pred eeccccccceeeccceeecceEEEEecCC
Q 011629 398 AITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 398 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
+.....+.+ .+.....+.++++++.
T Consensus 62 ---~~~~~~~~~-~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 62 ---PFQEPGIVT-EPLYDEPFFVIVPKGH 86 (219)
T ss_dssp ---SCCCTTEEE-EEEEEEEEEEEEETTC
T ss_pred ---CCCCCCeeE-EEeeeceEEEEEeCCC
Confidence 223344444 6888899999998764
No 141
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=70.27 E-value=6.6 Score=35.30 Aligned_cols=91 Identities=7% Similarity=-0.119 Sum_probs=52.2
Q ss_pred HhHHHHHHcCC--cEEEEEEEeC------CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHh-cc-CCce
Q 011629 3 AIADIVDYFGW--RNVIALYVDD------DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS-MMSR 72 (481)
Q Consensus 3 Ai~~ll~~fgW--~~V~ii~~dd------~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i-~~-s~~~ 72 (481)
.+++.|...|- ++|+++.... .......+.+++.++++|+.+..........+.+.....++++ +. ...+
T Consensus 123 ~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (304)
T 3gbv_A 123 FAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVK 202 (304)
T ss_dssp HHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeE
Confidence 34555656677 9999998432 2345668888999999876433222211111111223333333 32 2455
Q ss_pred EEEEEeCcHHHHHHHHHHHHcCC
Q 011629 73 ILILHTYDIWGLEVLNAAKHLRM 95 (481)
Q Consensus 73 vIvl~~~~~~~~~il~~a~~~g~ 95 (481)
.|+ +.+.. +..++.++.+.|+
T Consensus 203 ai~-~~~d~-a~g~~~al~~~g~ 223 (304)
T 3gbv_A 203 HGI-TFNSK-VYIIGEYLQQRRK 223 (304)
T ss_dssp EEE-ESSSC-THHHHHHHHHTTC
T ss_pred EEE-EcCcc-hHHHHHHHHHcCC
Confidence 544 44445 7788999999886
No 142
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=70.10 E-value=6.6 Score=35.98 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=57.4
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHH--HHHHccccc---E
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---A 392 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~d---~ 392 (481)
+.+++.+. |+| .|....+.-.|.+.+.+.+|.+ +...+. ....+.+ ..+.+++.| +
T Consensus 17 kpi~liVp----~~~-------GG~~D~~aR~la~~l~~~lg~~--vvV~N~------pGa~g~ig~~~v~~a~~DGytl 77 (312)
T 2f5x_A 17 RPVNMVVP----FAA-------GGPTDNVARSLAESMRPTLGET--VVVENK------GGAGGTIGTTQVARAQPDGYSI 77 (312)
T ss_dssp SCEEEEES----SCT-------TSHHHHHHHHHHHHHHHHHSSC--EEEEEC------CCGGGHHHHHHHHTSCSSSSEE
T ss_pred CCEEEEEe----eCC-------ccHHHHHHHHHHHHHHHHhCCC--EEEEec------CChHHHHHHHHHHhCCCCCcEE
Confidence 35666663 445 2333344557788888889976 444441 2466777 457888888 7
Q ss_pred EEeee--eeccccccceee------c--cceeecceEEEEecCCCCcCccccc
Q 011629 393 AVGDF--AITTERTKMVDF------T--QPYIESGLVVVAPIKKLNSNAWAFL 435 (481)
Q Consensus 393 ~~~~~--~~t~~r~~~~~f------s--~p~~~~~~~~~~~~~~~~~~~~~~l 435 (481)
+++.. .+++.+...+.| + -.+.....++++++++ ..+.+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~yd~~~df~pv~~~~~~~~~lvv~~ds-~~~sl~dL 129 (312)
T 2f5x_A 78 LLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDF-PPNNIKEL 129 (312)
T ss_dssp EEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECTTC-SCCSHHHH
T ss_pred EEecCHHHHHHHHcCCCCCCcccccceeeecccCcEEEEEeCCC-CCCCHHHH
Confidence 65433 245554443433 2 1245677788888766 45555555
No 143
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=69.68 E-value=6.7 Score=34.30 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=49.6
Q ss_pred eeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccc---cceeeccceeecceEEE
Q 011629 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVVV 421 (481)
Q Consensus 345 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~ 421 (481)
|+--+|+..+.++.|.++++.+. +-..++.++.+|.+|+.+..-....+.. ....-..|++...++++
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV 89 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIV 89 (237)
T ss_dssp THHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEE
Confidence 55567888888888866444433 4678899999999999876433222211 11123478999999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
+|++.
T Consensus 90 ~P~~~ 94 (237)
T 3muq_A 90 GPKAD 94 (237)
T ss_dssp ECTTC
T ss_pred EeCCC
Confidence 98766
No 144
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=69.51 E-value=11 Score=33.46 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCc
Q 011629 5 ADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYD 80 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~ 80 (481)
++.|. .|-++++++..... ......+.+++.+++.|+.+... ... ... + ...++++-+. ..+. |++.+.
T Consensus 115 ~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~-~~~--~-~~~~~~~l~~~~~~~a-i~~~~d 187 (277)
T 3hs3_A 115 IKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP-ENN--P-YISAQSALNKSNQFDA-IITVND 187 (277)
T ss_dssp HHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC-SSC--H-HHHHHHHHHTGGGCSE-EECSSH
T ss_pred HHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc-CCc--h-HHHHHHHHcCCCCCCE-EEECCH
Confidence 33344 79999999986533 34456788899999999987655 332 222 1 3334433322 3344 445666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.+.|+..++-+-|++
T Consensus 188 ~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 188 LYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEe
Confidence 6788899999999987766555543
No 145
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=69.31 E-value=13 Score=32.83 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=47.5
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccc-cceeeccceeecceEEEEecC
Q 011629 348 IDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT-KMVDFTQPYIESGLVVVAPIK 425 (481)
Q Consensus 348 ~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~-~~~~fs~p~~~~~~~~~~~~~ 425 (481)
.+++..+.++. +. ++++.. ++...++..|.+|++|+++.......++. ..+.+ .|+....++++++++
T Consensus 43 ~~~l~~f~~~~P~i--~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~~-~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 43 DVLAEKYNQQHPET--YVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHT-FTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHCTTC--EEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEE-EEEEEEEEEEEECTT
T ss_pred HHHHHHHHhhCCCc--eEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCceE-EEEEeeeEEEEECCC
Confidence 56778888877 54 466665 56788999999999999876432222110 23433 678889999999876
Q ss_pred C
Q 011629 426 K 426 (481)
Q Consensus 426 ~ 426 (481)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 146
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=69.19 E-value=26 Score=32.21 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=54.6
Q ss_pred cEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeCcHHHHHHHHHH
Q 011629 14 RNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~~~~~~il~~a 90 (481)
++|+++..... ......+.+++.+++.|. +.....+....+.+.....++++-+...++ .|++++...+..++.++
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al 224 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAA 224 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHH
Confidence 78999885432 344567888999999987 322222333333334444455443333333 34455667788889999
Q ss_pred HHcCCccCCeEEEEe
Q 011629 91 KHLRMMESGYVWIVT 105 (481)
Q Consensus 91 ~~~g~~~~~~~wI~~ 105 (481)
.+.|+..++.+-|++
T Consensus 225 ~~~G~~vP~di~vvg 239 (350)
T 3h75_A 225 RELGRKPGTDLLFSG 239 (350)
T ss_dssp HHTTCCBTTTBEEEE
T ss_pred HHcCCCCCCCeEEEe
Confidence 999987665554443
No 147
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=68.20 E-value=22 Score=29.72 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=56.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|++|+.. .. ...+-.+++..+.++.- ++++++.. .....++.+|.+|++|+++..
T Consensus 4 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIP--TV------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEecc--ch------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 3678888863 11 11345678888888773 45677766 568899999999999999753
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
. +.....+.+ .|+....+.++++++.
T Consensus 62 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 62 L---VKESEAFIE-VPLFDEPMLLAIYEDH 87 (219)
T ss_dssp C---CGGGTTSEE-EEEEEEEEEEEEETTS
T ss_pred C---CCCCCCcce-eeeecccEEEEEcCCC
Confidence 2 222233443 5788888888887654
No 148
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=67.99 E-value=31 Score=30.78 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccc-----c-ccceeecccee-ecceEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE-----R-TKMVDFTQPYI-ESGLVV 420 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~-----r-~~~~~fs~p~~-~~~~~~ 420 (481)
..+++.+-+.+|++ ++..+ .+-.-+..+|.+|++|+.......+.. . ...+..-.|.. .....+
T Consensus 32 ~~i~~~~Le~~G~~--Ve~~~-------~~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 102 (280)
T 3tmg_A 32 TNVLKVVFEKMGYN--AEIFS-------VTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQGF 102 (280)
T ss_dssp HHHHHHHHHHTTEE--EEEEE-------CCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCc--eEEEE-------CCcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEEE
Confidence 46677777779966 55555 345678899999999998764332211 0 11233334433 346889
Q ss_pred EEecCCCCcCccccccCcc
Q 011629 421 VAPIKKLNSNAWAFLNPFT 439 (481)
Q Consensus 421 ~~~~~~~~~~~~~~l~pf~ 439 (481)
+|++.. .+...++|+...
T Consensus 103 ~V~~~~-~i~sisDL~~~~ 120 (280)
T 3tmg_A 103 VVPSYV-PISSISELKGKG 120 (280)
T ss_dssp EEETTS-CCCBGGGGTTCG
T ss_pred EECCCC-CCCCHHHHHhhH
Confidence 999876 678889998754
No 149
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=67.87 E-value=5.5 Score=36.56 Aligned_cols=82 Identities=10% Similarity=-0.011 Sum_probs=48.4
Q ss_pred eeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHH--HHHHccccc---EEEee---eeeccccc-cceee------
Q 011629 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---AAVGD---FAITTERT-KMVDF------ 409 (481)
Q Consensus 345 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~d---~~~~~---~~~t~~r~-~~~~f------ 409 (481)
-+.--+.+.+++.+|.+ +...+. ....+.+ ..+.+++.| ++++. +.+++.+. ..+.|
T Consensus 35 ~~aR~la~~l~~~lg~~--vvV~N~------pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~~~yd~~~df 106 (314)
T 2dvz_A 35 IIARLVTQRMSQELGQP--MVVENK------GGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDF 106 (314)
T ss_dssp HHHHHHHHHHHHHHTSC--EEEEEC------CCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSE
T ss_pred HHHHHHHHHHHHHhCCC--EEEEEC------CCchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCCCCCCCchhcc
Confidence 34446777888888976 444431 2355666 458888887 65543 23444443 33434
Q ss_pred c--cceeecceEEEEecCCCCcCccccc
Q 011629 410 T--QPYIESGLVVVAPIKKLNSNAWAFL 435 (481)
Q Consensus 410 s--~p~~~~~~~~~~~~~~~~~~~~~~l 435 (481)
+ -.+...+.++++++++ ..+.+.+|
T Consensus 107 ~pv~~~~~~~~~lvv~~ds-~~~tl~dL 133 (314)
T 2dvz_A 107 QPVTNFANTANVVAVNPKF-PAKDFKGF 133 (314)
T ss_dssp EEEEEEEEECEEEEECTTS-SCSSHHHH
T ss_pred ceeeEcccCCEEEEEeCCC-CCCCHHHH
Confidence 1 1256678888888776 45555555
No 150
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=67.81 E-value=21 Score=30.05 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=58.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-.+++..+.++.. ++++.+.. .+...+..+|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TI------------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--cc------------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 4678888874 21 11345678888888774 35577766 568899999999999999764
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.. .....+.+ .+.....+.++++++.
T Consensus 68 ~~---~~~~~l~~-~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SK---AETEGLED-DLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SC---CCCTTEEE-EEEEEEEEEEEECTTS
T ss_pred CC---CCCCCeEE-EEecccCEEEEEcCCC
Confidence 32 22344444 6888899999997764
No 151
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=67.73 E-value=15 Score=33.12 Aligned_cols=83 Identities=8% Similarity=0.096 Sum_probs=52.5
Q ss_pred hHHHHHHc--CCcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYF--GWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~f--gW~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
.+++|... |-++|++|+...+ .+....+.+++.+++.|+.+...... +.++....++++.. ++..|+. .+.
T Consensus 129 ~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~-~~D 202 (302)
T 2qh8_A 129 HVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYA-LID 202 (302)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEE-CSC
T ss_pred HHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEE-CCc
Confidence 34666665 9999999996543 35566788999999999987654322 22456667777764 4555544 444
Q ss_pred HHHHHHHHHHHH
Q 011629 81 IWGLEVLNAAKH 92 (481)
Q Consensus 81 ~~~~~il~~a~~ 92 (481)
..+...+..+.+
T Consensus 203 ~~a~g~~~~l~~ 214 (302)
T 2qh8_A 203 NTVASAIEGMIV 214 (302)
T ss_dssp HHHHTTHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
No 152
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=67.06 E-value=16 Score=32.95 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=49.7
Q ss_pred HHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc-c------------cccceeecccee
Q 011629 349 DVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-E------------RTKMVDFTQPYI 414 (481)
Q Consensus 349 dl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~-~------------r~~~~~fs~p~~ 414 (481)
.+.+.+.++ .|. ++++.+. +.....+..|.+|++|+++....... . +.+.+.+..+++
T Consensus 38 ~la~~~~~~~~g~--~v~v~~~------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 109 (314)
T 1us5_A 38 GIAKLVNDANVGI--RANARST------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALY 109 (314)
T ss_dssp HHHHHHHHHTSSE--EEEEECC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCc--eEEEEec------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcC
Confidence 455555654 574 4666541 45778899999999999876432211 0 113344434677
Q ss_pred ecceEEEEecCCCCcCccccccC
Q 011629 415 ESGLVVVAPIKKLNSNAWAFLNP 437 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~p 437 (481)
..+..+++++++ ....+.+|..
T Consensus 110 ~~~~~lvv~~~~-~i~sl~dL~g 131 (314)
T 1us5_A 110 PEVVHVVARKDA-GIRTVADLKG 131 (314)
T ss_dssp EEEEEEEEETTS-SCSSGGGGTT
T ss_pred cceEEEEEECCC-CCCcHHHhCC
Confidence 788888888765 4556666664
No 153
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=67.06 E-value=44 Score=29.44 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHcC-CcEEEEEEEeCCc--ccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeCc
Q 011629 6 DIVDYFG-WRNVIALYVDDDH--GRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYD 80 (481)
Q Consensus 6 ~ll~~fg-W~~V~ii~~dd~~--g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~ 80 (481)
.|++.+| -++++++...... .....+.+++.+++. |+.+.... ....+.++-...++++.+...++ .|++++.
T Consensus 115 ~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD 192 (283)
T 2ioy_A 115 FIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQ--AADFDRSKGLSVMENILQAQPKIDAVFAQND 192 (283)
T ss_dssp HHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCSCCCEEEESSH
T ss_pred HHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeec--cCCCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 4555556 8999999854332 345677788899888 87764322 22223333334444443322222 3455666
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
..+..+++++.+.|+
T Consensus 193 ~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 193 EMALGAIKAIEAANR 207 (283)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHCCC
Confidence 778888998888886
No 154
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=66.94 E-value=28 Score=30.99 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=60.3
Q ss_pred hHHHHHHcC--CcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEE
Q 011629 4 IADIVDYFG--WRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILH 77 (481)
Q Consensus 4 i~~ll~~fg--W~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~ 77 (481)
+++.|...| =++++++..+.. ......+.+++.+++.|+.+.... . ..+.+.....++++.+. ..+. |++
T Consensus 119 a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~a-i~~ 194 (297)
T 3rot_A 119 LGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHPETNI-IFC 194 (297)
T ss_dssp HHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCTTCCE-EEE
T ss_pred HHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCCCCCE-EEE
Confidence 444444556 899999985533 334567889999999999887543 2 22333444555553322 2343 445
Q ss_pred eCcHHHHHHHHHHHHcCCccCC-eEEEEe
Q 011629 78 TYDIWGLEVLNAAKHLRMMESG-YVWIVT 105 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~-~~wI~~ 105 (481)
.+...+..+++++.+.|+..++ .+-|++
T Consensus 195 ~~d~~A~g~~~al~~~g~~vP~~dv~vig 223 (297)
T 3rot_A 195 LTSQALDPLGQMLLHPDRYDFNYQPQVYS 223 (297)
T ss_dssp SSHHHHHHHHHHHHSHHHHTCCCCCEEEE
T ss_pred cCCcchHHHHHHHHhcCCccCCCceEEEE
Confidence 5666778888888888766554 444443
No 155
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=66.69 E-value=20 Score=31.64 Aligned_cols=96 Identities=9% Similarity=0.091 Sum_probs=58.7
Q ss_pred hHHHHHHcCCcEEEEEEEeCC-c--ccchHHHHHHHHHhcCCEEEEEEecCCC--CChhHHHHHHHHhccC-CceEEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDD-H--GRNGIAALGDKLAEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSM-MSRILILH 77 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~-~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~s-~~~vIvl~ 77 (481)
+++.|...|-++++++..... . .....+.+++.+++.+. + .+... ...+......+.++.. .... |++
T Consensus 114 a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~ 187 (276)
T 3jy6_A 114 ATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-L----EVSESSYNHSEVHQRLTQLITQNDQKTV-AFA 187 (276)
T ss_dssp HHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-E----EECSSSCCHHHHHHHHHHHHHSSSSCEE-EEE
T ss_pred HHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-E----EEeccccCCcHHHHHHHHHHhcCCCCcE-EEE
Confidence 455555679999999997654 2 23456667777777653 1 12211 1222344444555442 3443 445
Q ss_pred eCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 78 TYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 78 ~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+...+..++..+.+.|+..++-+-|++
T Consensus 188 ~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 188 LKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp SSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred eCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 6677888899999999987776666554
No 156
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=65.81 E-value=3.8 Score=39.38 Aligned_cols=89 Identities=9% Similarity=-0.092 Sum_probs=53.8
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCC-cccEEEEeCCCCCCCCCHHHHHHHHHccc----cc
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY-AVPYKLVPFGDGHNSPKRFDLLRLVSEEV----YD 391 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----~d 391 (481)
..+|+||......+.|+....+ +-+.++.|+ ++ +++.. .+|..++.+|..|+ +|
T Consensus 32 ~~~l~ig~~~~~~~~p~~vA~~-------------~G~~~~~Gl~~V--e~~~~------~~~~~~~~al~~G~~~~giD 90 (417)
T 2g29_A 32 VTTAKLGFIALTDAAPLIIAKE-------------KGFYAKYGMPDV--EVLKQ------ASWGTTRDNLVLGSASGGID 90 (417)
T ss_dssp CSCCEEEECSSGGGHHHHHHHH-------------TTHHHHTTCTTC--EEEEC------SCHHHHHHHHHHCGGGTSCS
T ss_pred CceEEEEeeccHhHHHHHHHHH-------------CCchHHcCCCee--EEEec------CCHHHHHHHHHCCCCcCCcC
Confidence 4578998864333445433221 124566797 64 44442 46999999999999 99
Q ss_pred EEEee--ee--eccc---cccceeeccce--eecceEEEEecCC
Q 011629 392 AAVGD--FA--ITTE---RTKMVDFTQPY--IESGLVVVAPIKK 426 (481)
Q Consensus 392 ~~~~~--~~--~t~~---r~~~~~fs~p~--~~~~~~~~~~~~~ 426 (481)
++... +. .+.. |.+..++..+. ...+..++++++.
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~ 134 (417)
T 2g29_A 91 GAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNY 134 (417)
T ss_dssp EEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGG
T ss_pred eEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEEecch
Confidence 98753 22 2222 33445554443 4567888888765
No 157
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=65.80 E-value=19 Score=32.30 Aligned_cols=90 Identities=9% Similarity=-0.027 Sum_probs=52.6
Q ss_pred CcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-----CCceEEEEEeCcHHHHH
Q 011629 13 WRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLE 85 (481)
Q Consensus 13 W~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-----s~~~vIvl~~~~~~~~~ 85 (481)
-++|+++..... ......+.+++.+++.|. +..........+.++....++++-+ ..++. |++.+...+..
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a-i~~~nd~~A~g 205 (306)
T 2vk2_A 128 PCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICM-VYAHNDDMVIG 205 (306)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCE-EEESSHHHHHH
T ss_pred CCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeE-EEECCchHHHH
Confidence 789999986532 334567788889988886 2222112222232233334444322 23444 44556667888
Q ss_pred HHHHHHHcCCccCCeEEEE
Q 011629 86 VLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 86 il~~a~~~g~~~~~~~wI~ 104 (481)
++.++.+.|+..++.+-|+
T Consensus 206 ~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 206 AIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCCCCCeEEE
Confidence 8999999998766544444
No 158
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=65.77 E-value=36 Score=30.89 Aligned_cols=88 Identities=15% Similarity=0.015 Sum_probs=54.7
Q ss_pred HHHH-cCCcEEEEEEEeCC--cccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccC-CceE-EEEEeCc
Q 011629 7 IVDY-FGWRNVIALYVDDD--HGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRI-LILHTYD 80 (481)
Q Consensus 7 ll~~-fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~v-Ivl~~~~ 80 (481)
|++. -|-++|++|..... ......+.+++.+++. |+.+.... ....+.++....++++.+. ..++ .|++.+.
T Consensus 129 L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd 206 (332)
T 2rjo_A 129 LFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQ--VADWNSQKAFPIMQAWMTRFNSKIKGVWAAND 206 (332)
T ss_dssp HHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHHGGGEEEEEESSH
T ss_pred HHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEeec--cCCCCHHHHHHHHHHHHHhcCCCeeEEEECCC
Confidence 4443 59999999986533 3456678889999998 98765432 2222333334444444333 2233 3445566
Q ss_pred HHHHHHHHHHHHcCCc
Q 011629 81 IWGLEVLNAAKHLRMM 96 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~ 96 (481)
..+..++.++.+.|+.
T Consensus 207 ~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 207 DMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHHTTCB
T ss_pred chHHHHHHHHHHcCCC
Confidence 6788889999988865
No 159
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=65.44 E-value=20 Score=31.93 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeee-cc------ccccceeeccceeecceEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAI-TT------ERTKMVDFTQPYIESGLVV 420 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~-t~------~r~~~~~fs~p~~~~~~~~ 420 (481)
..++..+-+.+|+++++... ++ .-+..+|.+|++|+....... ++ .+.....+..-+....+.+
T Consensus 181 ~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 251 (268)
T 2b4l_A 181 TNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGL 251 (268)
T ss_dssp HHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCCeEEE
Confidence 34555666678977555442 23 677889999999998554322 21 1123345544455567889
Q ss_pred EEecCCCCcCccccccC
Q 011629 421 VAPIKKLNSNAWAFLNP 437 (481)
Q Consensus 421 ~~~~~~~~~~~~~~l~p 437 (481)
+||+....++.+++|++
T Consensus 252 ~Vp~~~~~i~si~DL~~ 268 (268)
T 2b4l_A 252 VVPQYMKNVNSIEDLKK 268 (268)
T ss_dssp EEETTCTTCCBGGGGTC
T ss_pred EEehhhcccCCHHHhcC
Confidence 99876645777777753
No 160
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=65.29 E-value=4 Score=36.87 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=58.1
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCC---CCChhHHH--HHHHHhccC--CceEE
Q 011629 4 IADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSP---KGSRNQII--DTLLTVSSM--MSRIL 74 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~---~~~~~~~~--~~l~~i~~s--~~~vI 74 (481)
+++.|...|-++|+++...... .....+.+++.+++.|+.+.....+.. ..+.+.-. ..++++-+. ....
T Consensus 122 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a- 200 (301)
T 3miz_A 122 LTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTA- 200 (301)
T ss_dssp HHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSE-
T ss_pred HHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcE-
Confidence 4455555699999999965443 345678888999999875421111111 11111111 333333332 3444
Q ss_pred EEEeCcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 75 ILHTYDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 75 vl~~~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
|++++...+..++..+.+.|+..++-+-|+
T Consensus 201 i~~~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 201 IMSGNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp EEESSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 455666778889999999987665544444
No 161
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=64.96 E-value=26 Score=32.25 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=58.0
Q ss_pred HHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEeCcH
Q 011629 6 DIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDI 81 (481)
Q Consensus 6 ~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~~~~ 81 (481)
+-|...|-++|++|...... .....+.+++.+++.|+.+.... ....+.++-...++++-+. .+.. |++++..
T Consensus 172 ~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~ 248 (349)
T 1jye_A 172 EHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTA-MLVANDQ 248 (349)
T ss_dssp HHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSE-EEESSHH
T ss_pred HHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccccc--cCCCChHHHHHHHHHHHhCCCCCCE-EEECChH
Confidence 33333499999999865332 34567788899999998643221 1122222222333333222 2444 4456667
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEe
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+..++.++.+.|+..++-+-|+.
T Consensus 249 ~A~g~~~al~~~G~~vP~disvvG 272 (349)
T 1jye_A 249 MALGAMRAITESGLRVGADISVVG 272 (349)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEC
T ss_pred HHHHHHHHHHHcCCCCCCcEEEEE
Confidence 788899999999987766555543
No 162
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=64.56 E-value=31 Score=28.35 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=56.8
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. ... ..+-.+++..+.++.- ++++++.. .+...+..+|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--ALG------------PTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--GGT------------TTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--hhh------------hhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 3678888864 111 1234678888888873 35577666 568889999999999998753
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
. +.....+.+ .++....+.++++++.
T Consensus 62 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 D---LDLSPEWQT-VPLMTREPMVVLGAEH 87 (209)
T ss_dssp S---SSCCTTEEE-EEEEEECCEEEEETTC
T ss_pred c---CCCCCCceE-EEeecCceEEEEeCCC
Confidence 2 222233433 6788888888887654
No 163
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=64.02 E-value=14 Score=30.78 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=57.7
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|++|+.. ... ..+-.+++..+.++.. ++++++.. ++...+..+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HTC------------FDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TTT------------HHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HHH------------HHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 4688888874 211 1344678888888773 35566665 456789999999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
. +.....+.+ .++....+.++++++.
T Consensus 65 ~---~~~~~~~~~-~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 E---AEKQNGISF-QPLFAYEMVGICAPDH 90 (222)
T ss_dssp C---CCCCTTEEE-EEEEEEEEEEEECTTS
T ss_pred C---CCCcCCeEE-EEeecCcEEEEecCCC
Confidence 2 233334544 6888899999997765
No 164
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=63.94 E-value=24 Score=32.74 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=59.6
Q ss_pred HhHHHHHHcCCcEEEEEEEe-------------------CCcccchHHHHHHHHHhcCCEEEEEEec-CCCCChhHHHHH
Q 011629 3 AIADIVDYFGWRNVIALYVD-------------------DDHGRNGIAALGDKLAEKRCRLSHKVPL-SPKGSRNQIIDT 62 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~d-------------------d~~g~~~~~~l~~~l~~~gi~v~~~~~~-~~~~~~~~~~~~ 62 (481)
.+++.|...|-+++++|... ........+.+++.++++|+.+.....+ ....+.+.-...
T Consensus 179 ~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~ 258 (366)
T 3h5t_A 179 PAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEV 258 (366)
T ss_dssp HHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHH
Confidence 34455555799999999832 2233456788899999998763210001 111222233334
Q ss_pred HHHhcc--CCceEEEEEeCcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 63 LLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 63 l~~i~~--s~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
++++-+ ..+.. |++++...+..++.++.+.|+..++-+-|+
T Consensus 259 ~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~~vP~disvi 301 (366)
T 3h5t_A 259 AKELLETHPDLTA-VLCTVDALAFGVLEYLKSVGKSAPADLSLT 301 (366)
T ss_dssp HHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcE-EEECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 444422 23444 445666778889999999998766555444
No 165
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=63.91 E-value=36 Score=30.94 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=59.9
Q ss_pred HHHHHHcCC-cEEEEEEEeC-CcccchHHHHHHHHHhcCCEEEEEEecCCCC-ChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 5 ADIVDYFGW-RNVIALYVDD-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 5 ~~ll~~fgW-~~V~ii~~dd-~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
++.|..-|- ++|++|...+ .......+.+++.+++.|..+.....+.... +.+.-....+.+.+.++++|+ ++...
T Consensus 120 a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~ 198 (318)
T 2fqx_A 120 AALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIF-QVAGG 198 (318)
T ss_dssp HHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEE-EECGG
T ss_pred HHHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEE-ECCCC
Confidence 445555576 8999998543 2234567788888888886544332332221 222333445555445677654 45556
Q ss_pred HHHHHHHHHHHcCCccCCeEEEEe
Q 011629 82 WGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 82 ~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
.+..++.++.++|+. ++-++++.
T Consensus 199 ~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 199 TGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp GHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CchHHHHHHHhhhhc-cCCcEEEE
Confidence 677888889888876 55566654
No 166
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=63.18 E-value=38 Score=31.64 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=59.5
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc----ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHH-h--------ccCC
Q 011629 4 IADIVDYFGWRNVIALYVDDDH----GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-V--------SSMM 70 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~----g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~-i--------~~s~ 70 (481)
.++-|...|-+++++|....+. .....+.+++.++++|+.+.... .+ +.+.+.-....++ | ++..
T Consensus 147 A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~-~~-d~t~e~G~~~a~~lL~~~~~~~~~~~~ 224 (371)
T 3qi7_A 147 LAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVN-TP-NINTEEDKNKVKQFLNEDIEKQVKKYG 224 (371)
T ss_dssp HHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEE-EC-CCSSTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeec-CC-CCchHHHHHHHHHHHhccccchhhccC
Confidence 3455667899999999975432 23367789999999999876553 32 2221112222222 2 2222
Q ss_pred ceEEEEEeCcHHHHHHHHHHHHcCCccC
Q 011629 71 SRILILHTYDIWGLEVLNAAKHLRMMES 98 (481)
Q Consensus 71 ~~vIvl~~~~~~~~~il~~a~~~g~~~~ 98 (481)
...-|.+++...+..+++++.++|...|
T Consensus 225 ~~TAIFatND~mAiG~ikal~e~Gi~VP 252 (371)
T 3qi7_A 225 KDINVFGVNEYMDEVILTKALELKYIVA 252 (371)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHCCBBC
T ss_pred CCcEEEECCHHHHHHHHHHHHHcCCccC
Confidence 2245677888899999999999987654
No 167
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=62.90 E-value=24 Score=28.83 Aligned_cols=68 Identities=9% Similarity=0.016 Sum_probs=48.2
Q ss_pred cCCcEEEEEEEeCCccc---chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeCc
Q 011629 11 FGWRNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 80 (481)
Q Consensus 11 fgW~~V~ii~~dd~~g~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~~ 80 (481)
|.=-+|+||...|+-|+ .....|.+.+++.|+.+.....++. +.+.+...+++..+ .++++||..+-.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34458999998776653 4567788899999999888777764 34466777776654 368999887654
No 168
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=62.60 E-value=46 Score=29.23 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=53.2
Q ss_pred eHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc--c-c---ccceeecccee-ecceE
Q 011629 347 CIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT--E-R---TKMVDFTQPYI-ESGLV 419 (481)
Q Consensus 347 ~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~--~-r---~~~~~fs~p~~-~~~~~ 419 (481)
...+++.+-+..|++ ++..+ .+-.-+..+|.+|++|+.......+. . . ...+..-.|.. .....
T Consensus 17 ~~~i~~~~Le~~G~~--Ve~~~-------~~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 87 (256)
T 3l6g_A 17 SINVLTQAMKEHGFD--VKTTA-------LDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVG 87 (256)
T ss_dssp HHHHHHHHHHHTTEE--EEEEE-------CCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCc--eEEEE-------CChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCCCceEE
Confidence 457788888888955 55555 34667899999999999876433220 0 0 12233334444 45789
Q ss_pred EEEecCCCCcCcccccc
Q 011629 420 VVAPIKKLNSNAWAFLN 436 (481)
Q Consensus 420 ~~~~~~~~~~~~~~~l~ 436 (481)
++||+.. .+...++|+
T Consensus 88 l~Vp~~~-~i~si~DL~ 103 (256)
T 3l6g_A 88 FVVPSYM-NVNSIEDLT 103 (256)
T ss_dssp EEEETTS-CCCBGGGCS
T ss_pred EEECCcc-CCCCHHHHH
Confidence 9999876 677888886
No 169
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=62.19 E-value=10 Score=34.48 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=50.2
Q ss_pred CeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHH--HHHHccccc---EEEeeee-e-ccccccceee----
Q 011629 341 DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---AAVGDFA-I-TTERTKMVDF---- 409 (481)
Q Consensus 341 ~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~d---~~~~~~~-~-t~~r~~~~~f---- 409 (481)
|....+.-.+.+.+++.+|.+ +...+. ....+.+ ..+.+++.| ++++... + ++.+...+.|
T Consensus 20 G~~D~~aR~la~~l~~~lg~~--vvV~n~------~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~ 91 (301)
T 2qpq_A 20 GGTDMLARLIGNYLTESLGQT--AVVENR------PGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKK 91 (301)
T ss_dssp SHHHHHHHHHHHHHHHGGGSC--EEEEEC------CTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTT
T ss_pred cHHHHHHHHHHHHHHHHhCCC--EEEEEC------CChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCchh
Confidence 444445557778888888866 444441 2356677 568888888 6554321 1 3433333333
Q ss_pred --c--cceeecceEEEEecCCCCcCccccc
Q 011629 410 --T--QPYIESGLVVVAPIKKLNSNAWAFL 435 (481)
Q Consensus 410 --s--~p~~~~~~~~~~~~~~~~~~~~~~l 435 (481)
+ -.+...+.++++++++ ..+.+.+|
T Consensus 92 d~~pv~~~~~~~~~lvv~~~s-~~~sl~dL 120 (301)
T 2qpq_A 92 DFAAVINVAYVPSVFVVPAGS-KYKTLGEL 120 (301)
T ss_dssp TEEEEEEEEEEEEEEEEETTC-SCCSHHHH
T ss_pred cchhhhehhcCCeEEEEeCCC-CCCCHHHH
Confidence 1 1256677888888776 45555555
No 170
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=62.17 E-value=40 Score=28.45 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=55.9
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|++|+.. .. ...+-..++..+.++.. ++++++.. .+...+..+|.+|++|+++..
T Consensus 29 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 29 RGSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp --CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEc
Confidence 3678888863 11 01334678888888773 35577766 457889999999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
. +.....+.+ .+.....+.++++++.
T Consensus 87 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 87 A---PVHSPELEA-IPLLTESLALVVAQHH 112 (238)
T ss_dssp S---SCCCTTEEE-EEEEEEEEEEEEETTS
T ss_pred C---CCCccccee-eeeccCcEEEEEcCCC
Confidence 2 222333444 6788889999987654
No 171
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=61.57 E-value=32 Score=30.36 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=57.1
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. ... ..+-.+++..+.++.. ++++.+.. .+...++..|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TPI------------YRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GGG------------GTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--chh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4688999874 211 1344678888888763 35577666 457788999999999999764
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.. .....+.+ .|.....+.++++++.
T Consensus 148 ~~---~~~~~l~~-~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FF---PRHPGIEI-VNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CC---CCCTTEEE-EEEEEEEEEEEEEGGG
T ss_pred cC---CCCCCceE-EEEeeccEEEEEeCCC
Confidence 32 22333433 6788888888887653
No 172
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=61.29 E-value=46 Score=29.63 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=51.6
Q ss_pred cCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC----CceEEEEEeCcHHHH
Q 011629 11 FGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM----MSRILILHTYDIWGL 84 (481)
Q Consensus 11 fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s----~~~vIvl~~~~~~~~ 84 (481)
-|-++|++|..... ......+.+++.++++|+.+.....+....+.+.....++++-+. .++. |++.+...+.
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-i~~~~d~~a~ 216 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV-VIANNDAMAM 216 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCE-EEESSHHHHH
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccE-EEECCchhHH
Confidence 57889999985432 345667888999999998665433222222333334445554333 3444 4455666778
Q ss_pred HHHHHHHHcC
Q 011629 85 EVLNAAKHLR 94 (481)
Q Consensus 85 ~il~~a~~~g 94 (481)
.++.++.+.|
T Consensus 217 g~~~al~~~g 226 (309)
T 2fvy_A 217 GAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8888888876
No 173
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=61.13 E-value=15 Score=33.89 Aligned_cols=93 Identities=8% Similarity=-0.058 Sum_probs=56.7
Q ss_pred EEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeee-eccccccceeec---cceeecce
Q 011629 343 FSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA-ITTERTKMVDFT---QPYIESGL 418 (481)
Q Consensus 343 ~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~-~t~~r~~~~~fs---~p~~~~~~ 418 (481)
+.|+-+-.-+-+-++-|+++ +++.. .++..++.+|.+|++|+++++.. ....|.+..+.. .-+-....
T Consensus 21 ~ap~~vA~~kG~f~e~GLdV--ei~~~------~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~ 92 (342)
T 4esw_A 21 HIPVYLANIKGYFKDENLDI--AILEP------SNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFT 92 (342)
T ss_dssp GHHHHHHHHTTHHHHTTCEE--EEEEE------SSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCE
T ss_pred hHHHHHHHHCCchHHcCCeE--EEEeC------CChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcc
Confidence 34444444444556678664 44442 46888999999999999876542 233454443332 22233455
Q ss_pred EEEEecCCCCcCccccccCcchhHH
Q 011629 419 VVVAPIKKLNSNAWAFLNPFTPKMW 443 (481)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~pf~~~~W 443 (481)
.+++++++...+...+|+.-...++
T Consensus 93 ~~~~~~~~~~~~~~~dLkGK~ig~~ 117 (342)
T 4esw_A 93 GICYLEGSGITSDFQSLKGKRIGYV 117 (342)
T ss_dssp EEEEETTSSCCSSGGGGTTCEEEES
T ss_pred cccccccccccCCHHHhCCCEEEec
Confidence 6677766655667888887776554
No 174
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=60.66 E-value=14 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCCC
Q 011629 446 TGIFFLVVGVVVWILEHRLNDDF 468 (481)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
.+++=++||+++-++++|+|.+-
T Consensus 7 ~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 34555678999999999999753
No 175
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=60.65 E-value=33 Score=30.84 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=54.5
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH-HHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW-GLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~-~~~il~~a 90 (481)
+.|+++..+ +.|.....+.+++.+++.|+.+..... ..+.+.....++.+...+.+.||+...... ....+.++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 468888854 567778899999999999998775432 223334456677777778999988765433 34566677
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.|
T Consensus 80 ~~~~ 83 (313)
T 3m9w_A 80 KQEG 83 (313)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 6655
No 176
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=60.59 E-value=46 Score=28.66 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=55.5
Q ss_pred hHHHHHHcCCcEEEEEEEe--C-CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVD--D-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~d--d-~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+++.|...|-++|+++... + .......+.+++.+++.|+.+.. +....+.++-...++++-+..++. |++++.
T Consensus 106 a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~a-i~~~~d 181 (255)
T 1byk_A 106 LMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTA-LLCATD 181 (255)
T ss_dssp HHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCE-EEESSH
T ss_pred HHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce---eecCCccchHHHHHHHHhcCCCCE-EEEeCh
Confidence 3444444699999999854 2 23456788899999999986432 222223333334444444444554 445666
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
..+..++.++.+.|+
T Consensus 182 ~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 182 TLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 778888999998886
No 177
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=60.47 E-value=30 Score=30.82 Aligned_cols=82 Identities=9% Similarity=0.022 Sum_probs=54.6
Q ss_pred cEEEEEEEe---CCcccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHH
Q 011629 14 RNVIALYVD---DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLN 88 (481)
Q Consensus 14 ~~V~ii~~d---d~~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~ 88 (481)
..|+++..+ +.+.....+.+++.+++. |..+..........+.+.....++.+...+.+.||+..... .....+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 88 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTD 88 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHH
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 568888755 346667788889999988 77766554332223444456677888888899998876543 3456666
Q ss_pred HHHHcCC
Q 011629 89 AAKHLRM 95 (481)
Q Consensus 89 ~a~~~g~ 95 (481)
.+.+.|.
T Consensus 89 ~~~~~~i 95 (304)
T 3gbv_A 89 ALNELGI 95 (304)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 6666553
No 178
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=60.17 E-value=17 Score=32.61 Aligned_cols=96 Identities=8% Similarity=0.111 Sum_probs=58.1
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHh-cc--CCceEEEEEe
Q 011629 4 IADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS--MMSRILILHT 78 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i-~~--s~~~vIvl~~ 78 (481)
+++.|...|-++|++|...... .....+.+++.+++.|+.+.. .+... ... ....++++ -+ ...+. |+++
T Consensus 135 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~-~~~-~~~~~~~~~l~~~~~~~a-i~~~ 209 (305)
T 3huu_A 135 LTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS-MND-LRDFIKQYCIDASHMPSV-IITS 209 (305)
T ss_dssp HHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS-HHH-HHHHC--------CCCSE-EEES
T ss_pred HHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC-cHH-HHHHHHHhhhcCCCCCCE-EEEC
Confidence 3445555699999999876443 345678889999999987654 12111 111 22334444 22 23444 4456
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
+...+..++..+.+.|+..++-+-|+
T Consensus 210 nd~~A~g~~~al~~~g~~vP~di~vi 235 (305)
T 3huu_A 210 DVMLNMQLLNVLYEYQLRIPEDIQTA 235 (305)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred ChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 67788889999999998766555444
No 179
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=60.15 E-value=35 Score=32.29 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred hHHHHHHcCCcEEEEEEEeCCc----ccchHHHHHHHHHhcCCEEEEEEecCCC-CChhHHHHHHHH-hcc-CCceEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDDH----GRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLT-VSS-MMSRILIL 76 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~----g~~~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~~~~~~l~~-i~~-s~~~vIvl 76 (481)
+++.|...|-+++++|...... .....+.+.+.+++.|+........... .+.+.....+.+ ++. ..... |+
T Consensus 130 a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-I~ 208 (412)
T 4fe7_A 130 AFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTG-II 208 (412)
T ss_dssp HHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEE-EE
T ss_pred HHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeE-EE
Confidence 4455556799999999865443 4567888999999999764322211111 122222333333 333 23444 45
Q ss_pred EeCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 77 HTYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 77 ~~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+++...+..++..+.+.|+..++-+-|+.
T Consensus 209 ~~nD~~A~g~~~al~~~G~~vP~disvig 237 (412)
T 4fe7_A 209 AVTDARARHILQVCEHLHIPVPEKLCVIG 237 (412)
T ss_dssp ESSHHHHHHHHHHHHHHTCCTTTTSEEEE
T ss_pred EEecHHHHHHHHHHHHcCCCCCceEEEEe
Confidence 66777888899999999987766555554
No 180
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=60.14 E-value=17 Score=35.13 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=54.6
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
+.++++.+|-+++.||++..... ...+.+.+.|++.|+.+.+. .+....+.+.+....+.+++ +.++||..+.. -
T Consensus 82 l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSvi 158 (450)
T 1ta9_A 82 SYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTM 158 (450)
T ss_dssp HHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHH
Confidence 44667778866898888554332 46788888999999987543 34444455567777777777 89999987653 3
Q ss_pred HHHHHH
Q 011629 82 WGLEVL 87 (481)
Q Consensus 82 ~~~~il 87 (481)
++..++
T Consensus 159 D~AK~i 164 (450)
T 1ta9_A 159 DSAKYI 164 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 181
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=60.01 E-value=11 Score=33.45 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=57.5
Q ss_pred hHHHHHHcCCcEEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~~ 80 (481)
+++.|...|-++++++....+ ......+.+.+.+++.|+.+.. ... ...+.++.... ++. ...+. |++.+.
T Consensus 113 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~-~~~~~~~~~~~---l~~~~~~~a-i~~~~d 186 (277)
T 3e61_A 113 QAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LEA-TLLDNDKKFID---LIKELSIDS-IICSND 186 (277)
T ss_dssp HHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EEG-GGGGSHHHHHH---HHHHHTCCE-EEESSH
T ss_pred HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-eec-CCCCHHHHHHH---hhcCCCCCE-EEECCc
Confidence 445555569999999985533 3445678889999999987765 222 12121222222 332 23444 445666
Q ss_pred HHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 81 IWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
..+..++.++.++|+..++-+-|++
T Consensus 187 ~~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 187 LLAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEe
Confidence 7788899999999987766665554
No 182
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.58 E-value=30 Score=30.63 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=49.9
Q ss_pred EEEEEEEeCC--cccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeCcHHHHHHHHHH
Q 011629 15 NVIALYVDDD--HGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAA 90 (481)
Q Consensus 15 ~V~ii~~dd~--~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~~~~~~il~~a 90 (481)
+|++|..... ......+.+.+.+++. |+.+.... ....+.++....++++-+...++ .|++.+...+..++..+
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 214 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSV--SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEAL 214 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeec--cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHH
Confidence 9999985432 3445678889999998 88876542 22223334444455543332332 34556666778889999
Q ss_pred HHcCCc
Q 011629 91 KHLRMM 96 (481)
Q Consensus 91 ~~~g~~ 96 (481)
.+.|+.
T Consensus 215 ~~~g~~ 220 (293)
T 3l6u_A 215 KKAKIS 220 (293)
T ss_dssp HHTTCC
T ss_pred HhCCCC
Confidence 998864
No 183
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=59.58 E-value=31 Score=29.33 Aligned_cols=82 Identities=12% Similarity=0.006 Sum_probs=56.3
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.++|++|+.. ... ..+-.+++..+.++.. ++++.+.. .+...+...|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DTA------------DTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HHH------------TTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 4678888864 111 1344678888888773 34566665 568899999999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.. . ..+ -+.++....+.++++++.
T Consensus 84 ~~---~--~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AK---V--DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SC---C---CC-CEEEEEEECEEEEEETTC
T ss_pred cC---C--CCc-ceEEeecCCEEEEEcCCC
Confidence 32 1 123 347888899999998765
No 184
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=59.23 E-value=35 Score=29.70 Aligned_cols=92 Identities=11% Similarity=-0.012 Sum_probs=57.1
Q ss_pred HhHHHHHHcCCcEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 3 AIADIVDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
..++.++..|.+.|-+.... .+......+.+++.+++.|+.+........ ...+.+...++..+.-+++.|++....
T Consensus 34 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~~ 112 (257)
T 3lmz_A 34 TTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPNY 112 (257)
T ss_dssp HHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEECG
T ss_pred HHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCCH
Confidence 35667777888888766431 112234567888888888887664432211 234456666666666677777776555
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
.....+...|.+.|+
T Consensus 113 ~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 113 ELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 666667777766654
No 185
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=59.18 E-value=63 Score=28.47 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=56.3
Q ss_pred HHHHHcC--CcEEEEEEEeCCc--ccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccC--CceEEEEEe
Q 011629 6 DIVDYFG--WRNVIALYVDDDH--GRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHT 78 (481)
Q Consensus 6 ~ll~~fg--W~~V~ii~~dd~~--g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~vIvl~~ 78 (481)
.|+++.| -++|++|...... .....+.+++.+++. |+.+... .....+.+.-...++++-+. ..+ .|++.
T Consensus 124 ~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~-ai~~~ 200 (288)
T 1gud_A 124 FIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVAS--QPADWDRIKALDVATNVLQRNPNIK-AIYCA 200 (288)
T ss_dssp HHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHCTTCC-EEEES
T ss_pred HHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEe--ecCCccHHHHHHHHHHHHHhCCCce-EEEEC
Confidence 4555557 8999999855432 235677788899887 8865432 22222333333444443322 233 35556
Q ss_pred CcHHHHHHHHHHHHcCCccCCeEEEE
Q 011629 79 YDIWGLEVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 79 ~~~~~~~il~~a~~~g~~~~~~~wI~ 104 (481)
+...+..+++++.+.|+. .+...+.
T Consensus 201 nD~~A~g~~~al~~~G~~-~dv~vvG 225 (288)
T 1gud_A 201 NDTMAMGVAQAVANAGKT-GKVLVVG 225 (288)
T ss_dssp SHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred CCchHHHHHHHHHhcCCC-CCeEEEE
Confidence 667788899999998863 3333333
No 186
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=59.13 E-value=42 Score=29.82 Aligned_cols=91 Identities=10% Similarity=-0.033 Sum_probs=52.0
Q ss_pred HHHHHcCCc-EEEEEEEeCC--cccchHHHHHHHHHhcCCEEEEEEe-cCCCCChhHHHHHHHHhccCCceE-EEEEeCc
Q 011629 6 DIVDYFGWR-NVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVP-LSPKGSRNQIIDTLLTVSSMMSRI-LILHTYD 80 (481)
Q Consensus 6 ~ll~~fgW~-~V~ii~~dd~--~g~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~ 80 (481)
.|+++.|-+ +++++..... ......+.+++.+++++..+..... +....+.++....++++.+...++ .|++.+.
T Consensus 119 ~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 198 (303)
T 3d02_A 119 HMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGS 198 (303)
T ss_dssp HHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEEESST
T ss_pred HHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 344447887 9998875432 2345677788888876533322211 121223334445555554433333 3444555
Q ss_pred HHHHHHHHHHHHcCCc
Q 011629 81 IWGLEVLNAAKHLRMM 96 (481)
Q Consensus 81 ~~~~~il~~a~~~g~~ 96 (481)
..+..+++++.+.|+.
T Consensus 199 ~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 199 NGPIGAGRAVKEKRAK 214 (303)
T ss_dssp THHHHHHHHHHHTTCT
T ss_pred cchhHHHHHHHhcCCC
Confidence 6778888888888865
No 187
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=58.94 E-value=31 Score=30.55 Aligned_cols=81 Identities=7% Similarity=-0.011 Sum_probs=48.5
Q ss_pred CCcE--EEEEEEeCC--cccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeCcHHHH
Q 011629 12 GWRN--VIALYVDDD--HGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGL 84 (481)
Q Consensus 12 gW~~--V~ii~~dd~--~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~~~~~~ 84 (481)
|-++ |+++....+ ......+.+++.+++. |+.+... +....+.++....++++.+ ..++.| ++.+...+.
T Consensus 128 G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai-~~~~d~~a~ 204 (290)
T 2fn9_A 128 DAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQ--QSAEFDRDTAYKVTEQILQAHPEIKAI-WCGNDAMAL 204 (290)
T ss_dssp SCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEE--EECTTCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHH
T ss_pred cccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEe--ccCCCCHHHHHHHHHHHHHhCCCCcEE-EECCchHHH
Confidence 7888 666664332 3446678888999988 8776432 2222232333344444432 234544 455666778
Q ss_pred HHHHHHHHcCC
Q 011629 85 EVLNAAKHLRM 95 (481)
Q Consensus 85 ~il~~a~~~g~ 95 (481)
.+++++.+.|+
T Consensus 205 g~~~al~~~g~ 215 (290)
T 2fn9_A 205 GAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88898988886
No 188
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=58.90 E-value=21 Score=33.26 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=51.5
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+.++++.+|.+++-||++.... ...+.+.+.|++.++.+ + ..+..+.+.+...+.++.+++.++++||..+..
T Consensus 25 l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 97 (353)
T 3hl0_A 25 VAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGG 97 (353)
T ss_dssp HHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 5577889999999999855443 35677888888765433 2 233334455667788888888889999988764
No 189
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=58.80 E-value=27 Score=31.88 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHcC-CcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeCcH
Q 011629 6 DIVDYFG-WRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDI 81 (481)
Q Consensus 6 ~ll~~fg-W~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~~~ 81 (481)
.|+++.| -++|++|..... ......+.+++.+++.|+ +.....+....+.++....++++-+ ..++. |++.+..
T Consensus 167 ~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~nd~ 244 (342)
T 1jx6_A 167 EFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYYTKATKQSGYDAAKASLAKHPDVDF-IYACSTD 244 (342)
T ss_dssp HHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEECCCSSHHHHHHHHHHHHHHCCCCSE-EEESSHH
T ss_pred HHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEecCCCCHHHHHHHHHHHHHhCCCccE-EEECCCh
Confidence 3455567 999999985543 234567778888888886 3222223222233333344444432 23444 4456666
Q ss_pred HHHHHHHHHHHcCC
Q 011629 82 WGLEVLNAAKHLRM 95 (481)
Q Consensus 82 ~~~~il~~a~~~g~ 95 (481)
.+..++.++.+.|+
T Consensus 245 ~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 245 VALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCC
Confidence 78888888888886
No 190
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=58.53 E-value=51 Score=28.69 Aligned_cols=92 Identities=8% Similarity=-0.077 Sum_probs=63.9
Q ss_pred HhHHHHHHcCCcEEEEEEEe------------CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC
Q 011629 3 AIADIVDYFGWRNVIALYVD------------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM 70 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~d------------d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~ 70 (481)
..++.++..|.+.|-+.... ........+.+++.+++.|+.+........ ...+.+...++..+.-+
T Consensus 26 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lG 104 (262)
T 3p6l_A 26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAMD 104 (262)
T ss_dssp HHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHcC
Confidence 45677888899988876532 112234578999999999998876544432 23446777788778888
Q ss_pred ceEEEEEeCcHHHHHHHHHHHHcCC
Q 011629 71 SRILILHTYDIWGLEVLNAAKHLRM 95 (481)
Q Consensus 71 ~~vIvl~~~~~~~~~il~~a~~~g~ 95 (481)
++.|++.........+...|.+.|+
T Consensus 105 a~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 105 LEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8888887666666677777777664
No 191
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=58.46 E-value=10 Score=35.44 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccccccee-ec-ccee
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVD-FT-QPYI 414 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~-fs-~p~~ 414 (481)
-.+.+.+.++.|-+++++..+.+ .=++..++++++..|.+|++..+......+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g---~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAG---AVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTT---SSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCC---cccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 35778888888867777777621 01368899999999999999877666665554433 32 5553
No 192
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=58.23 E-value=17 Score=33.92 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=50.8
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+.+.++.+|.+++-||++....+ ..+.+.+.|++.++.+ +. ....+.+.+...+.++.+++.++++||..+..
T Consensus 27 l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 99 (358)
T 3jzd_A 27 VAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGG 99 (358)
T ss_dssp HHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCc
Confidence 45678899999999998654433 4677888887765322 22 23334455667777888888889999988764
No 193
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.77 E-value=39 Score=24.75 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=50.3
Q ss_pred HHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeC--cH
Q 011629 6 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTY--DI 81 (481)
Q Consensus 6 ~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~--~~ 81 (481)
.-++.-| -+|.++|+|.+. .....-.+++++.|..+.-. .+.+++..-+..|-. .+-+|+++... .+
T Consensus 20 reikrqg-vrvvllysdqde--krrrerleefekqgvdvrtv------edkedfrenireiwerypqldvvvivttddke 90 (162)
T 2l82_A 20 REIKRQG-VRVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV------EDKEDFRENIREIWERYPQLDVVVIVTTDDKE 90 (162)
T ss_dssp HHHHHTT-CEEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHHCTTCCEEEEEECCCHH
T ss_pred HHHHhCC-eEEEEEecCchH--HHHHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHhCCCCcEEEEEecCcHH
Confidence 3344444 367788877663 23344455788889887532 245577766666633 34556555443 45
Q ss_pred HHHHHHHHHHHcCC
Q 011629 82 WGLEVLNAAKHLRM 95 (481)
Q Consensus 82 ~~~~il~~a~~~g~ 95 (481)
-+..++.+|.+.|.
T Consensus 91 wikdfieeakergv 104 (162)
T 2l82_A 91 WIKDFIEEAKERGV 104 (162)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCc
Confidence 67889999999874
No 194
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=56.42 E-value=37 Score=30.75 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=52.7
Q ss_pred HHHHc-CCcEEEEEEEeCC--cccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeCc
Q 011629 7 IVDYF-GWRNVIALYVDDD--HGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYD 80 (481)
Q Consensus 7 ll~~f-gW~~V~ii~~dd~--~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~~ 80 (481)
|++.+ |-++|++|..... ......+.+++.+++. |+.+... +....+.++....++++.+ ..++.| ++.+.
T Consensus 121 L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~aI-~~~nd 197 (325)
T 2x7x_A 121 IASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK--ADAAWERGPAEIEMDSMLRRHPKIDAV-YAHND 197 (325)
T ss_dssp HHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE--EECTTSHHHHHHHHHHHHHHCSCCCEE-EESST
T ss_pred HHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee--ecCCCCHHHHHHHHHHHHHhCCCCCEE-EECCC
Confidence 44443 8999999986533 3445678888899988 8776532 2222232333344444432 234544 45666
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
..+..++.++.+.|+
T Consensus 198 ~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 198 RIAPGAYQAAKMAGR 212 (325)
T ss_dssp THHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCC
Confidence 677888888888885
No 195
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=56.15 E-value=32 Score=28.33 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=46.6
Q ss_pred cCCcEEEEEEEeCC------c-c---cchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeC
Q 011629 11 FGWRNVIALYVDDD------H-G---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 79 (481)
Q Consensus 11 fgW~~V~ii~~dd~------~-g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~ 79 (481)
|.=-+|+||...|+ . | ......|.+.+++.|+.+.....++. +.+.+...+++..+. ++++||..+-
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34457888887752 1 2 35677788899999999887777764 344667777665543 5899998764
No 196
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.64 E-value=6.9 Score=35.07 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=58.8
Q ss_pred hHHHHHHcCCcEEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEe--cCCCCChhHHHHHHHHh-ccC-C--ceEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVP--LSPKGSRNQIIDTLLTV-SSM-M--SRILIL 76 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~--~~~~~~~~~~~~~l~~i-~~s-~--~~vIvl 76 (481)
+++.|...|-++++++..... ......+.+.+.++++|+.+..... .......+.....++++ +.. . .+. |+
T Consensus 128 a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-i~ 206 (298)
T 3tb6_A 128 AAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTA-IL 206 (298)
T ss_dssp HHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSE-EE
T ss_pred HHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeE-EE
Confidence 445555569999999986544 2345677888999999876432111 11110001112333333 322 2 344 44
Q ss_pred EeCcHHHHHHHHHHHHcCCccCCeEEEEe
Q 011629 77 HTYDIWGLEVLNAAKHLRMMESGYVWIVT 105 (481)
Q Consensus 77 ~~~~~~~~~il~~a~~~g~~~~~~~wI~~ 105 (481)
+.+...+..++.++.+.|+..++-+-|++
T Consensus 207 ~~~d~~a~g~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 207 CYNDEIALKVIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp CSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred EeCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 55667788899999999987666555554
No 197
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.56 E-value=39 Score=29.85 Aligned_cols=79 Identities=6% Similarity=-0.070 Sum_probs=54.1
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a 90 (481)
+.|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+.... ......+..+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALD---AGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEc---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 468888864 34556678899999999999887652 12233344566777777788998887654 3455667777
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.|.
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77653
No 198
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=54.82 E-value=53 Score=27.50 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=57.3
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-.+++..+.++.- ++++++.. .+...+...|.+|++|+++..
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 4688888863 11 11344678888888873 35677776 567899999999999999753
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.. ......+.+ .+.....+.++++++.
T Consensus 71 ~~--~~~~~~l~~-~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 71 ER--LSNDPQLVA-FPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SS--STTCTTEEE-EEEEEECEEEEEETTC
T ss_pred cc--cCCCCCceE-EEeeecceEEEecCCC
Confidence 11 111233443 5788888888887654
No 199
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=54.17 E-value=34 Score=30.18 Aligned_cols=69 Identities=7% Similarity=-0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccc---cccceeeccceeecceEEEEe
Q 011629 348 IDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE---RTKMVDFTQPYIESGLVVVAP 423 (481)
Q Consensus 348 ~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~---r~~~~~fs~p~~~~~~~~~~~ 423 (481)
-+++..+.++. +.+ +.+.. ++-...+.+|.+|++|+++....++.+ +...+ -..|+...+++++++
T Consensus 19 ~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv~ 88 (264)
T 4ecf_A 19 EAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIVN 88 (264)
T ss_dssp HHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEEc
Confidence 45677777766 544 55544 457889999999999998765444331 11223 357899999999998
Q ss_pred cCC
Q 011629 424 IKK 426 (481)
Q Consensus 424 ~~~ 426 (481)
++.
T Consensus 89 ~~~ 91 (264)
T 4ecf_A 89 KKV 91 (264)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 200
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=53.99 E-value=15 Score=35.05 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHcCCcEEEEEEEeCCccc-chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc--H
Q 011629 5 ADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--I 81 (481)
Q Consensus 5 ~~ll~~fgW~~V~ii~~dd~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~--~ 81 (481)
.++++ +| +++.||+++..... ...+.+.+.++ |+++........+.+.+.+.+.++.+++.++++||..+.. -
T Consensus 44 ~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 119 (408)
T 1oj7_A 44 REQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVL 119 (408)
T ss_dssp HHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHH
T ss_pred HHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 45566 78 89988884432222 24667777775 7775433333344555677778888888889999987653 3
Q ss_pred HHHHHHH
Q 011629 82 WGLEVLN 88 (481)
Q Consensus 82 ~~~~il~ 88 (481)
++..++.
T Consensus 120 D~AK~iA 126 (408)
T 1oj7_A 120 DGTKFIA 126 (408)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 201
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=53.91 E-value=56 Score=28.98 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=56.3
Q ss_pred ceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 318 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 318 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
++++|++.. .. ...+-..++..+.++.. ++++.+.. +....+...|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AI------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HH------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 578888863 11 11334678888888773 35566665 4567889999999999997632
Q ss_pred eeccccccceeeccceeecceEEEEecCC
Q 011629 398 AITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 398 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
... .....+. +.+.....++++++++.
T Consensus 150 ~~~-~~~~~l~-~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKH-DIDTDLE-AQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGG-GSCTTEE-EEEEEECCEEEEEETTC
T ss_pred CCC-CCccCee-EEEeecCcEEEEEcCCC
Confidence 211 1123343 36888899999998765
No 202
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=52.87 E-value=19 Score=32.38 Aligned_cols=72 Identities=6% Similarity=0.093 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHH---C---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccc--ccceee-cc-ceee
Q 011629 346 YCIDVFTAVLEL---L---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTER--TKMVDF-TQ-PYIE 415 (481)
Q Consensus 346 ~~~dl~~~ia~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r--~~~~~f-s~-p~~~ 415 (481)
+-.+++..+.++ . + +++++.. ++-..++.+|.+|++|+++..-....+. ...+.+ .. ++..
T Consensus 34 ~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~ 104 (294)
T 3cvg_A 34 LVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFR 104 (294)
T ss_dssp HHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEE
T ss_pred HHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEe
Confidence 456788889888 7 6 4466666 5688999999999999987532211111 011222 24 8888
Q ss_pred cceEEEEecCC
Q 011629 416 SGLVVVAPIKK 426 (481)
Q Consensus 416 ~~~~~~~~~~~ 426 (481)
..++++++++.
T Consensus 105 d~lvlv~~~~h 115 (294)
T 3cvg_A 105 DHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEECTTC
T ss_pred ccEEEEecCCC
Confidence 99999998765
No 203
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=52.74 E-value=23 Score=29.45 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=45.2
Q ss_pred cEEEEEEEeCCc----ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 14 RNVIALYVDDDH----GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~dd~~----g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
-+|+||...|+- -......+...+++.|+.+.....++. +.+.+...+++....++++||..+-.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 368888876542 235677888899999999888777764 34456666666543568899887643
No 204
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=52.42 E-value=19 Score=31.49 Aligned_cols=73 Identities=11% Similarity=-0.057 Sum_probs=48.4
Q ss_pred eeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccc---cceeeccceeecceEEE
Q 011629 345 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVVV 421 (481)
Q Consensus 345 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~ 421 (481)
|+--+|+..+.++.|.++++.+. .-..++.++.+|.+|+.++.=...++.. ....-..+|+...++++
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV 89 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVII 89 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEE
T ss_pred hHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEE
Confidence 44557788888888866444443 4678999999999999866432222211 11122368999999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
+|+++
T Consensus 90 ~P~~~ 94 (242)
T 3kn3_A 90 GNPSF 94 (242)
T ss_dssp ECTHH
T ss_pred EeCCC
Confidence 98754
No 205
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=52.02 E-value=22 Score=28.92 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=44.9
Q ss_pred EEEEEEEeCC--cc---cchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeCc
Q 011629 15 NVIALYVDDD--HG---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYD 80 (481)
Q Consensus 15 ~V~ii~~dd~--~g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~~ 80 (481)
+|+||...|+ .| ......|.+.+++.|+.+.....++. +.+.+...+++..+. ++++||..+-.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5778876654 22 24567888999999999887777764 344677777766553 68999887654
No 206
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=51.66 E-value=79 Score=28.37 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=47.3
Q ss_pred cCCcEEEEEEEeCC--cccchHHHHHHHHHhc--CCEEEEEEecCCCCChhHHHHHHHHhccCCceE-EEEEeCcHHHHH
Q 011629 11 FGWRNVIALYVDDD--HGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLE 85 (481)
Q Consensus 11 fgW~~V~ii~~dd~--~g~~~~~~l~~~l~~~--gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~v-Ivl~~~~~~~~~ 85 (481)
-|-++|++|..... ......+.+.+.+++. ++.+.... . ...+.++....++++.++..++ .|++.+...+..
T Consensus 126 ~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~g 203 (316)
T 1tjy_A 126 KEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQ-F-GYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPA 203 (316)
T ss_dssp SSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEE-E-CTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHH
T ss_pred CCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEec-c-CCCCHHHHHHHHHHHHHhCCCCCEEEECCCccHHH
Confidence 36889999985432 3445667778888766 55554322 1 1223333444455443322333 344556677788
Q ss_pred HHHHHHHcC
Q 011629 86 VLNAAKHLR 94 (481)
Q Consensus 86 il~~a~~~g 94 (481)
+++++.+.|
T Consensus 204 ~~~al~~~G 212 (316)
T 1tjy_A 204 AAQAAENLK 212 (316)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888888887
No 207
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.91 E-value=56 Score=28.54 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=53.3
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
+.|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.-...++.+...+.+-||+..... ...+..+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~ 82 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFD---ANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEIL 82 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEE---CTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHH
Confidence 568888854 34566778889999999999877543 222333445677788888899999887655 55666666
Q ss_pred HcCC
Q 011629 92 HLRM 95 (481)
Q Consensus 92 ~~g~ 95 (481)
+.+.
T Consensus 83 ~~~i 86 (276)
T 3jy6_A 83 HQQM 86 (276)
T ss_dssp TTSS
T ss_pred HCCC
Confidence 5543
No 208
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=50.68 E-value=53 Score=28.94 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=45.6
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc-c--cccceeeccceeecceEEEEe
Q 011629 348 IDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-E--RTKMVDFTQPYIESGLVVVAP 423 (481)
Q Consensus 348 ~dl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~-~--r~~~~~fs~p~~~~~~~~~~~ 423 (481)
-.++..+.++. +.+ +.+.. ++-...+.+|.+|++|+++....... + ....+ -..|+...+++++++
T Consensus 19 ~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~ 88 (265)
T 4exl_A 19 EVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVN 88 (265)
T ss_dssp HHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEEC
Confidence 45566666666 544 55444 45778999999999999876433321 1 11222 247899999999998
Q ss_pred cCC
Q 011629 424 IKK 426 (481)
Q Consensus 424 ~~~ 426 (481)
++.
T Consensus 89 ~~~ 91 (265)
T 4exl_A 89 KEV 91 (265)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 209
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.04 E-value=40 Score=30.88 Aligned_cols=78 Identities=8% Similarity=-0.026 Sum_probs=52.2
Q ss_pred cEEEEEEEeC---CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeCcHHHHHHHH
Q 011629 14 RNVIALYVDD---DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLN 88 (481)
Q Consensus 14 ~~V~ii~~dd---~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~~~~~~~il~ 88 (481)
.+|+++..+. .|.....+.+++.+++.|+.+.... ...+.+.....++.+.. .+++.||+.........++.
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~---~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~ 80 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY---AERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILR 80 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE---CCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHH
Confidence 5788888642 4667788899999999999887652 12233333455665555 47898888765455566777
Q ss_pred HHHHcC
Q 011629 89 AAKHLR 94 (481)
Q Consensus 89 ~a~~~g 94 (481)
.+.+.|
T Consensus 81 ~~~~~g 86 (350)
T 3h75_A 81 LSQGSG 86 (350)
T ss_dssp HHTTSC
T ss_pred HHHhCC
Confidence 776654
No 210
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=49.06 E-value=84 Score=27.28 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=52.4
Q ss_pred HHHHHc-CCcEEEEEEEeCCc--ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhcc--CCceEEEEEeCc
Q 011629 6 DIVDYF-GWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYD 80 (481)
Q Consensus 6 ~ll~~f-gW~~V~ii~~dd~~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~--s~~~vIvl~~~~ 80 (481)
.|+++. |-+++++|...... .....+.+++.+++.|+.+... .....+.+.-...++++-+ ...+ .|++.+.
T Consensus 115 ~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~-ai~~~nD 191 (271)
T 2dri_A 115 YIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLLTAHPDVQ-AVFAQND 191 (271)
T ss_dssp HHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EECTTCHHHHHHHHHHHHHHCTTCC-EEEESSH
T ss_pred HHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cCCCCCHHHHHHHHHHHHHhCCCcc-EEEECCC
Confidence 344443 56899999854322 3456778889999999876432 2222232233333444322 2233 3556677
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
..+..+++++.+.|+
T Consensus 192 ~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 192 EMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHcCC
Confidence 778899999998886
No 211
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=48.59 E-value=35 Score=30.51 Aligned_cols=70 Identities=10% Similarity=-0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-cc-ccEEEeeeeecc---ccccceeeccceeecceEEE
Q 011629 348 IDVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-EV-YDAAVGDFAITT---ERTKMVDFTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~d~~~~~~~~t~---~r~~~~~fs~p~~~~~~~~~ 421 (481)
-++++.+.++ .|.+ +.+.. ++-..++..+.. |. +|+.+++-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~--V~~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi~ 90 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVD--VEREP-------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVLA 90 (292)
T ss_dssp HHHHHHHHHHCTTEE--EEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCce--EEEEe-------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEEE
Confidence 3677777777 5855 44443 346788888888 65 999876421111 12233445678888999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
++++.
T Consensus 91 ~~~~~ 95 (292)
T 3cfz_A 91 YTDKS 95 (292)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98764
No 212
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=48.37 E-value=57 Score=29.36 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=53.4
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
+.||++..+ +.|.....+.+++.+++.|+.+.... . ..+.+.-...++.+...+.+.||+..... .....+.++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--A-DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--C-TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--C-CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 468888864 45667788889999999999877553 2 22333344566676666788888876543 345667777
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.|.
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76653
No 213
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=48.36 E-value=23 Score=28.74 Aligned_cols=64 Identities=8% Similarity=0.053 Sum_probs=45.0
Q ss_pred cEEEEEEEeCCc--c---cchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 14 RNVIALYVDDDH--G---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~dd~~--g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
-+|+||...|+- | ......|...+++.|+.+.....++. + +.+...+++..+.++++||..+-.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 368888876542 2 35677888899999999887766654 3 467777776654568999987643
No 214
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.82 E-value=33 Score=30.33 Aligned_cols=92 Identities=8% Similarity=-0.093 Sum_probs=54.3
Q ss_pred hHHHHHH--cCCcEEEEEEEeCCc--ccchHHHHHHHHHhc-CCEEEEEEecCCCC-ChhHHHHHHHHhccC-----Cce
Q 011629 4 IADIVDY--FGWRNVIALYVDDDH--GRNGIAALGDKLAEK-RCRLSHKVPLSPKG-SRNQIIDTLLTVSSM-----MSR 72 (481)
Q Consensus 4 i~~ll~~--fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-~~~~~~~~l~~i~~s-----~~~ 72 (481)
+++.|.. -|-++|+++...... .....+.+++.+++. |+.+.....+.... +.+.....++++-+. .++
T Consensus 114 ~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (291)
T 3l49_A 114 LALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVG 193 (291)
T ss_dssp HHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCC
T ss_pred HHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcC
Confidence 3444444 789999999754332 334577888999988 67653322222221 222333444444332 345
Q ss_pred EEEEEeCcHHHHHHHHHHHHcCCc
Q 011629 73 ILILHTYDIWGLEVLNAAKHLRMM 96 (481)
Q Consensus 73 vIvl~~~~~~~~~il~~a~~~g~~ 96 (481)
.| ++.+...+..++.++.+.|+.
T Consensus 194 ai-~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 194 AI-WACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp EE-EESSHHHHHHHHHHHHHTTCC
T ss_pred EE-EECCCchHHHHHHHHHHcCCC
Confidence 44 456667788889999998864
No 215
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=47.51 E-value=20 Score=31.08 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHccc-ccEEEeeeeecccc---cccee--eccceeecceEEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTER---TKMVD--FTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d~~~~~~~~t~~r---~~~~~--fs~p~~~~~~~~~ 421 (481)
-++++.+.++.|.++++.+ ++-..++..+.+|. +|+.+++-.-..++ ...+. -..+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677778777887655433 34667888888887 99987642111111 12222 2357888999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
+++++
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98865
No 216
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=47.24 E-value=70 Score=28.48 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=48.5
Q ss_pred eeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccccceeeccceeecceEEEEecC
Q 011629 346 YCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIK 425 (481)
Q Consensus 346 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~ 425 (481)
+-.+++..+.++.. ++++.+.. .+...+...|.+|++|+++.... .....+.+ .+.....+.++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~---~~~~~l~~-~~L~~~~~~~v~~~~ 171 (312)
T 2h9b_A 104 LLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK---ISDPAIKH-SLLRNERLMVAVHAS 171 (312)
T ss_dssp THHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC---CCCTTEEE-EEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC---CCCCCceE-EEeecceEEEEEcCC
Confidence 44678888887763 35577766 56789999999999999976332 22233433 678888888888765
Q ss_pred C
Q 011629 426 K 426 (481)
Q Consensus 426 ~ 426 (481)
.
T Consensus 172 h 172 (312)
T 2h9b_A 172 H 172 (312)
T ss_dssp S
T ss_pred C
Confidence 3
No 217
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=47.03 E-value=36 Score=30.45 Aligned_cols=70 Identities=6% Similarity=-0.017 Sum_probs=45.7
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-cc-ccEEEeeeeecc---ccccceeeccceeecceEEE
Q 011629 348 IDVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-EV-YDAAVGDFAITT---ERTKMVDFTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~d~~~~~~~~t~---~r~~~~~fs~p~~~~~~~~~ 421 (481)
-++++.+.++ .|.+ +++.. +.-..++..+.. |. +|+.+++-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~--V~~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVD--VQREA-------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCE--EEEEE-------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCce--EEEEe-------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3677777777 5866 55444 456788888888 64 999875421111 22233445678888999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
++++.
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98764
No 218
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=46.54 E-value=47 Score=29.93 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc----cc---ccceeeccc-eeecceEE
Q 011629 349 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT----ER---TKMVDFTQP-YIESGLVV 420 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~----~r---~~~~~fs~p-~~~~~~~~ 420 (481)
.+++.+-+..|++ ++..+ ++-..+..+|.+|++|+.......+. ++ ...+..-.+ .......+
T Consensus 24 ~i~~~~Le~~G~~--Ve~~~-------~~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 94 (298)
T 2rin_A 24 ATATTILEALGYE--TDVKV-------LSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTL 94 (298)
T ss_dssp HHHHHHHHHHTCE--EEEEC-------CCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCc--eEEEE-------CCcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCCeEEE
Confidence 4555555667966 55554 34567889999999999875433321 11 122332233 34566889
Q ss_pred EEecCCC--CcCccccccC
Q 011629 421 VAPIKKL--NSNAWAFLNP 437 (481)
Q Consensus 421 ~~~~~~~--~~~~~~~l~p 437 (481)
+|++... .+...++|+.
T Consensus 95 ~V~~~~ae~~I~si~DLk~ 113 (298)
T 2rin_A 95 ATNAKGAELGIKDFKDIAA 113 (298)
T ss_dssp EEEHHHHHHTCCBGGGSGG
T ss_pred EEchhHHhcCCCCHHHHHH
Confidence 9987541 4677888873
No 219
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.13 E-value=45 Score=29.45 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=53.1
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a 90 (481)
..|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+.... ......+.++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVAT---SQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEEC---CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 568888854 34566778889999999999877542 22233344566777777788888887654 3334666677
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.+.
T Consensus 86 ~~~~i 90 (293)
T 3l6u_A 86 KKAGI 90 (293)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 66553
No 220
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=46.00 E-value=41 Score=29.78 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccccceeeccceeecceEEEEecC
Q 011629 349 DVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIK 425 (481)
Q Consensus 349 dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~ 425 (481)
.+++++++.+ +-.+++.+.. +.-.+.+.++.+|.+|++.++-.++.+..+.-.-..|+...+++++++++
T Consensus 49 p~~~~~a~~f~~~~p~v~v~~~~-------~GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~ 121 (279)
T 4gd5_A 49 PVMEAEAEAFKTKKPDVSIEINQ-------IGSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKN 121 (279)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEE-------CCHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHCCCceEEEee-------CCcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccC
Confidence 4556665543 1123455554 34667888999999999877655554332222223578889999999876
Q ss_pred C
Q 011629 426 K 426 (481)
Q Consensus 426 ~ 426 (481)
+
T Consensus 122 n 122 (279)
T 4gd5_A 122 N 122 (279)
T ss_dssp C
T ss_pred C
Confidence 6
No 221
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=45.15 E-value=22 Score=31.18 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHccc-ccEEEeeeeeccc---ccccee--eccceeecceEEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTE---RTKMVD--FTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d~~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~ 421 (481)
-++++++.++.|.++++.+ +.-..++..+..|. +|+.+++-.-..+ ....++ -..+|....++|+
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677788788887655443 34667888888886 9998774211111 122222 1246788899999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
+++++
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98875
No 222
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=45.03 E-value=64 Score=28.38 Aligned_cols=79 Identities=11% Similarity=-0.025 Sum_probs=54.1
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH----HHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI----WGLEVL 87 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~----~~~~il 87 (481)
+.|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.-...++.+...+.+-||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTS---TNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999865 45667788999999999999877542 122333445667777778899988876432 234566
Q ss_pred HHHHHcCC
Q 011629 88 NAAKHLRM 95 (481)
Q Consensus 88 ~~a~~~g~ 95 (481)
.++.+.+.
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666553
No 223
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=44.98 E-value=32 Score=30.71 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=52.1
Q ss_pred cEEEEEE-EeC--CcccchHHHHHHHHHhcCCE---EEEEEecCCCCChhHHHHHHHHhccC--CceE-EEEEeCcHHHH
Q 011629 14 RNVIALY-VDD--DHGRNGIAALGDKLAEKRCR---LSHKVPLSPKGSRNQIIDTLLTVSSM--MSRI-LILHTYDIWGL 84 (481)
Q Consensus 14 ~~V~ii~-~dd--~~g~~~~~~l~~~l~~~gi~---v~~~~~~~~~~~~~~~~~~l~~i~~s--~~~v-Ivl~~~~~~~~ 84 (481)
.+++++. ... .......+.+.+.++++|+. +.... ....+.+.....++++-+. ..+. +|++++...+.
T Consensus 133 ~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~ 210 (306)
T 8abp_A 133 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP--TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 210 (306)
T ss_dssp GGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEE--CSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHH
T ss_pred cceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeec--cCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHH
Confidence 3888886 333 23445678888899988752 33221 2222333444555555443 3444 35566667788
Q ss_pred HHHHHHHHcCCccCCeEEEE
Q 011629 85 EVLNAAKHLRMMESGYVWIV 104 (481)
Q Consensus 85 ~il~~a~~~g~~~~~~~wI~ 104 (481)
.+++++.+.|+.. +.+-|+
T Consensus 211 g~~~al~~~g~~v-~di~vv 229 (306)
T 8abp_A 211 GGVRATEGQGFKA-ADIIGI 229 (306)
T ss_dssp HHHHHHHHTTCCG-GGEEEE
T ss_pred HHHHHHHHcCCCC-CceEEE
Confidence 8999999998765 444444
No 224
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.59 E-value=53 Score=29.17 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=53.2
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
++|++|..+ +.+.....+.+++.+++.|+.+.... ....+.+.....++.+.+.+.+.||+..... .....+.++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 467777754 35666778889999999999887532 2223334455667777777888888875433 345567777
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.|.
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76653
No 225
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=44.42 E-value=89 Score=27.92 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=48.6
Q ss_pred eeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccccceeeccceeecceEEEEecC
Q 011629 346 YCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIK 425 (481)
Q Consensus 346 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~ 425 (481)
+-.+++..+.++.. ++++++.. .+...+...|.+|++|+++.... .....+.+ .+.....+.++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~---~~~~~l~~-~~L~~~~~~~v~~~~ 171 (313)
T 2h98_A 104 LLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK---ITDPAIRR-IMLHKEQLKLAIHKH 171 (313)
T ss_dssp THHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC---CCCTTEEE-EEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC---CCCCCeeE-EEeeeCcEEEEEcCC
Confidence 45678888888773 35577666 56789999999999999976322 22233433 678888888888765
Q ss_pred C
Q 011629 426 K 426 (481)
Q Consensus 426 ~ 426 (481)
.
T Consensus 172 h 172 (313)
T 2h98_A 172 H 172 (313)
T ss_dssp S
T ss_pred C
Confidence 3
No 226
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=44.16 E-value=43 Score=27.42 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=42.6
Q ss_pred EEEEEEEeCCcc----------cchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhc-cCCceEEEEEeCc
Q 011629 15 NVIALYVDDDHG----------RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTYD 80 (481)
Q Consensus 15 ~V~ii~~dd~~g----------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~-~s~~~vIvl~~~~ 80 (481)
+|+||+..|... ......|.+.|.+.|+.|.....++.+ .+.+...+.... ...+++||..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 688887554211 234567889999999999888777643 335666665544 3568899887643
No 227
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.77 E-value=46 Score=29.34 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=50.5
Q ss_pred cEEEEEEEe-------CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHH
Q 011629 14 RNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 86 (481)
Q Consensus 14 ~~V~ii~~d-------d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~i 86 (481)
+.|+++..+ +.|.....+.+++.+++.|..+... ....+.+.....++.+...+.+.||+...... ...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~~ 84 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DRI 84 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CHH
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHH
Confidence 568888765 4566677888999999999887642 22222233456677777788888888654322 245
Q ss_pred HHHHHHcCC
Q 011629 87 LNAAKHLRM 95 (481)
Q Consensus 87 l~~a~~~g~ 95 (481)
+..+.+.+.
T Consensus 85 ~~~l~~~~i 93 (292)
T 3k4h_A 85 IQYLHEQNF 93 (292)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 555655553
No 228
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.31 E-value=91 Score=28.20 Aligned_cols=79 Identities=8% Similarity=-0.108 Sum_probs=51.4
Q ss_pred CcEEEEEEEe----CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHH
Q 011629 13 WRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 88 (481)
Q Consensus 13 W~~V~ii~~d----d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~ 88 (481)
=+.|+++..+ +.|.....+.+++.+++.|..+.... ...+.+.-...++.+...+.+-||+.........+..
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 137 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDD 137 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE---CTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHH
Confidence 3578998865 34566778888999999999876543 2223333445677777778888888765433334444
Q ss_pred HHHHcC
Q 011629 89 AAKHLR 94 (481)
Q Consensus 89 ~a~~~g 94 (481)
.+.+.+
T Consensus 138 ~~~~~~ 143 (338)
T 3dbi_A 138 IIDAHS 143 (338)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 455544
No 229
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=41.89 E-value=43 Score=29.17 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeee
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA 398 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~ 398 (481)
.++++.-.+++|++++++.++ |......+..|+.|+.+.+..
T Consensus 145 a~~iq~~l~~iGi~v~i~~~~---------~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 145 LEIYTRALERLGIAAQIEKVD---------NAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHHTTTCCCEEEEEC---------HHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCeeEEEecC---------HHHHHHHhccCCccEEEecCC
Confidence 456666666789888877776 999999999999999877654
No 230
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.80 E-value=29 Score=30.23 Aligned_cols=79 Identities=6% Similarity=-0.075 Sum_probs=51.6
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
+.|+++..+ +.|.....+.+++.+++.|..+.... ...+.+.....++.+.+.+.+-||+..........+..+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIAS---SDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 468888865 34566778889999999999877542 2223334456677777778888888654422234555565
Q ss_pred HcCC
Q 011629 92 HLRM 95 (481)
Q Consensus 92 ~~g~ 95 (481)
+.|.
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 5553
No 231
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=41.61 E-value=59 Score=28.58 Aligned_cols=78 Identities=5% Similarity=-0.063 Sum_probs=49.9
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
+.|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+..... .....+..+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFD---SQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeC---CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 368888854 45666778888999999999876432 122333344566777667788888865432 233456666
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 80 ~~~~ 83 (290)
T 2fn9_A 80 KEAG 83 (290)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 5554
No 232
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=40.94 E-value=84 Score=28.45 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=49.0
Q ss_pred cEEEEEEEe---CCcccchHHHHHHHHHhcCCEEEEEEecCC-CCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHH
Q 011629 14 RNVIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSP-KGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 89 (481)
Q Consensus 14 ~~V~ii~~d---d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~-~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~ 89 (481)
..|+++..+ +.+.....+.+++.+.+.|..+.....-.. ..+.+.-...++.+...+.+.||+..........+..
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 368888855 456667788889999999987654421121 0233334456777766778888884433322344555
Q ss_pred HHHcC
Q 011629 90 AKHLR 94 (481)
Q Consensus 90 a~~~g 94 (481)
+.+.+
T Consensus 124 ~~~~~ 128 (342)
T 1jx6_A 124 VLDST 128 (342)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 55544
No 233
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=40.34 E-value=1.4e+02 Score=24.41 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=43.4
Q ss_pred EEEEE-EeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 16 VIALY-VDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 16 V~ii~-~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
|+||. +++|+ ...+...+.|++.||..+.. ..+...+.+.+.+++++.++.+.+|||..+...
T Consensus 25 V~IimGS~SD~--~v~~~a~~~L~~~gI~~e~~-V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~a 88 (181)
T 4b4k_A 25 VGVIMGSTSDW--ETMKYACDILDELNIPYEKK-VVSAHRTPDYMFEYAETARERGLKVIIAGAGGA 88 (181)
T ss_dssp EEEEESSGGGH--HHHHHHHHHHHHTTCCEEEE-ECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred EEEEECCHhHH--HHHHHHHHHHHHcCCCeeEE-EEccccChHHHHHHHHHHHhcCceEEEEecccc
Confidence 77766 33343 56777888899999876544 344445555677777888888899998876543
No 234
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=40.19 E-value=38 Score=30.13 Aligned_cols=89 Identities=3% Similarity=-0.073 Sum_probs=54.1
Q ss_pred hHHHHHHcC-----CcEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHH-hccCCceEEE
Q 011629 4 IADIVDYFG-----WRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-VSSMMSRILI 75 (481)
Q Consensus 4 i~~ll~~fg-----W~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~-i~~s~~~vIv 75 (481)
+++.|...| -++|+++.... .......+.+++.+++.|+.+.... ....+.+.....+++ ++...... |
T Consensus 122 a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i 198 (304)
T 3o1i_D 122 AGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I 198 (304)
T ss_dssp HHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E
T ss_pred HHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E
Confidence 445555556 88999997543 2345668889999999998876532 222233333333333 32234555 3
Q ss_pred EEeCcHHHHHHHHHHHHcCCc
Q 011629 76 LHTYDIWGLEVLNAAKHLRMM 96 (481)
Q Consensus 76 l~~~~~~~~~il~~a~~~g~~ 96 (481)
+++...+..+++++.+.|+.
T Consensus 199 -~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 199 -VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp -EECHHHHHHHHHHHTTTTCG
T ss_pred -EecCcchHHHHHHHHhcCCC
Confidence 56667788888888888764
No 235
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=39.85 E-value=81 Score=27.76 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=55.1
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-.+++..+.++.. ++++.+.. .+...+...|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TV------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GG------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hh------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4678988874 21 11344678888888773 35566665 468899999999999998753
Q ss_pred eeeccccccceeecccee-ecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYI-ESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~-~~~~~~~~~~~~ 426 (481)
.+.....+.+ .+.. .....++++++.
T Consensus 152 ---~~~~~~~l~~-~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 ---EHDLDSTIET-EPLMPPQRPHALLPEGH 178 (306)
T ss_dssp ---SSSCCTTEEE-EESSCCBCCEEEEETTC
T ss_pred ---ccccccccce-eeeeeccccEEEecCCC
Confidence 2223333433 5565 677778887654
No 236
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.78 E-value=1.2e+02 Score=26.54 Aligned_cols=76 Identities=7% Similarity=-0.071 Sum_probs=47.7
Q ss_pred CcEEEEEEEe----CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHH
Q 011629 13 WRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 88 (481)
Q Consensus 13 W~~V~ii~~d----d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~ 88 (481)
=..|+++..+ +.+.....+.+++.++++|+.+... ....+.+.....++.+...+.+.||+....... ..+.
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~ 94 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA---DGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEID 94 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE---CCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE---eCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHHH
Confidence 3578888854 3566678888999999999987643 222233334556777777778888887653221 3344
Q ss_pred HHHH
Q 011629 89 AAKH 92 (481)
Q Consensus 89 ~a~~ 92 (481)
.+.+
T Consensus 95 ~l~~ 98 (296)
T 3brq_A 95 DIID 98 (296)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5555
No 237
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=39.54 E-value=85 Score=27.69 Aligned_cols=79 Identities=9% Similarity=-0.062 Sum_probs=49.8
Q ss_pred cEEEEEEE--eCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYV--DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~--dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
..|+++.. ++.+.....+.+++.+++.|+.+... .+...+.+.....++.+...+.+.||+..... .....+..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQV--GPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEE--CCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 36788874 34566677888899999999877532 12222333344567777667788888876543 334556666
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 83 ~~~~ 86 (303)
T 3d02_A 83 RDAG 86 (303)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 6654
No 238
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=38.88 E-value=33 Score=27.92 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=40.9
Q ss_pred EEEEEEEeCCc--c---cchHHHHHHH----HHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 15 NVIALYVDDDH--G---RNGIAALGDK----LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 15 ~V~ii~~dd~~--g---~~~~~~l~~~----l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+|+||...|+- | ......|.+. +++.|+.+.....++. +.+.+...+++..+..+++||..+-.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 67777765532 2 2456778888 8889998887766764 34466677776655458999887643
No 239
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=38.84 E-value=46 Score=27.22 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=41.5
Q ss_pred EEEEEEEeCC--cc---cchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 15 NVIALYVDDD--HG---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 15 ~V~ii~~dd~--~g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+|+||...|+ .| ......|.+.+.+.|+.+.....++. +.+.+...+++..+. +++||..+-
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~-~DlVittGG 71 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEV-SDLVVSSGG 71 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHH-CSEEEEESC
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhc-CCEEEEcCC
Confidence 5777776653 13 24577788888999998887777754 334566666655443 788888764
No 240
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=38.66 E-value=93 Score=27.68 Aligned_cols=89 Identities=8% Similarity=-0.065 Sum_probs=52.5
Q ss_pred HHHHHcCCcEEEEEEEeCCc--ccchHHHHHHHHHhc----CCEEEEEEecCCCCChhHHHHHHHHhc-cC--CceEEEE
Q 011629 6 DIVDYFGWRNVIALYVDDDH--GRNGIAALGDKLAEK----RCRLSHKVPLSPKGSRNQIIDTLLTVS-SM--MSRILIL 76 (481)
Q Consensus 6 ~ll~~fgW~~V~ii~~dd~~--g~~~~~~l~~~l~~~----gi~v~~~~~~~~~~~~~~~~~~l~~i~-~s--~~~vIvl 76 (481)
.|++..|-++|++|...... .....+.+++.+++. ++.+.... +....+.+.....++++- .. .+.. |+
T Consensus 116 ~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~a-i~ 193 (313)
T 3m9w_A 116 ALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQ-WVDGWLPENALKIMENALTANNNKIDA-VV 193 (313)
T ss_dssp HHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-ECGGGCHHHHHHHHHHHHHHTTTCCCE-EE
T ss_pred HHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeec-cCCCcCHHHHHHHHHHHHHhCCCCeeE-EE
Confidence 34447899999999854332 334577788888877 56664332 222223333334444433 22 3343 44
Q ss_pred EeCcHHHHHHHHHHHHcCCc
Q 011629 77 HTYDIWGLEVLNAAKHLRMM 96 (481)
Q Consensus 77 ~~~~~~~~~il~~a~~~g~~ 96 (481)
+.+...+..++.++.+.|+.
T Consensus 194 ~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 194 ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp ESSHHHHHHHHHHHHTTTCT
T ss_pred ECCCchHHHHHHHHHHcCCC
Confidence 55667778889888888864
No 241
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=38.42 E-value=76 Score=28.34 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=46.6
Q ss_pred eHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccccceeeccceeecceEEEEecCC
Q 011629 347 CIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 347 ~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
-..++..+.+... ++++.+.. ++...+...|.+|++|+++... +.....+.+ .|.....+.++++++.
T Consensus 120 l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 120 MPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMFRKDH 187 (315)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECC---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecC---CCCCCCceE-EEeeccceEEEEeCCC
Confidence 4567788877763 35576665 4566889999999999997532 222233433 6788888888887654
No 242
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=38.23 E-value=48 Score=29.86 Aligned_cols=79 Identities=6% Similarity=-0.127 Sum_probs=50.4
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
+.|+++..+ +.+.....+.+++.+++.|+.+... .+...+.+.-...++.+...+.+.||+..... .+...+.++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 468888743 4466677788888899999876532 12223333344567777777889888865433 335567777
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.|
T Consensus 82 ~~~g 85 (316)
T 1tjy_A 82 MQRG 85 (316)
T ss_dssp HHTT
T ss_pred HHCc
Confidence 6655
No 243
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=38.21 E-value=60 Score=28.92 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=45.5
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-cc-ccEEEeeee--ecc-ccccceeeccceeecceEEE
Q 011629 348 IDVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-EV-YDAAVGDFA--ITT-ERTKMVDFTQPYIESGLVVV 421 (481)
Q Consensus 348 ~dl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~d~~~~~~~--~t~-~r~~~~~fs~p~~~~~~~~~ 421 (481)
-++++.+.++ .|.++++.+ +....++..+.. |. +|+.+++-. +.. .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 3577777777 486654433 346778888888 74 999876321 111 12233445678899999999
Q ss_pred EecCC
Q 011629 422 APIKK 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
++++.
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98765
No 244
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=37.97 E-value=47 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-C-CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeee
Q 011629 348 IDVFTAVLEL-L-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA 398 (481)
Q Consensus 348 ~dl~~~ia~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~ 398 (481)
.++++.-.++ + |++++++..+ |..+...+..|+.|+.+.+..
T Consensus 115 a~~i~~~l~~~i~GI~v~i~~~~---------~~~~~~~~~~g~~d~~~~~w~ 158 (229)
T 3o6p_A 115 VEFVQGSIQDALDGVKVTVSPVP---------FSVRLDRSNKGDFDAVIGGWS 158 (229)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEC---------HHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEecC---------HHHHHHHhhcCCceEEEeccc
Confidence 4556666666 8 9776666655 999999999999999876543
No 245
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=37.18 E-value=64 Score=28.63 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=55.1
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-.+++..+.++.. ++++.+.. .+...++..|.+|++|+++..
T Consensus 100 ~~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 100 QRTFVFAATD--YT------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEEC
T ss_pred CceEEEEeCh--HH------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEec
Confidence 3678888863 11 11334577788887763 35577765 345678889999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
....+.....+.+ .++....+.++++++.
T Consensus 158 ~~~~~~~~~~l~~-~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 158 DEEHERLPEGIQA-HDWFADRYVVVARRDH 186 (310)
T ss_dssp CSTTCCCCTTEEE-EEEEEECEEEEEESSC
T ss_pred CcccccCCcCcce-eeeeccceEEEEeCCC
Confidence 1002222233433 6788888898887654
No 246
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=37.02 E-value=1.4e+02 Score=23.76 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCEEEE--EEe-cCCCC--ChhHHHHHHHHhccCC--ceEEEEEeC------cHHHHHHHHHHHHcC
Q 011629 30 IAALGDKLAEKRCRLSH--KVP-LSPKG--SRNQIIDTLLTVSSMM--SRILILHTY------DIWGLEVLNAAKHLR 94 (481)
Q Consensus 30 ~~~l~~~l~~~gi~v~~--~~~-~~~~~--~~~~~~~~l~~i~~s~--~~vIvl~~~------~~~~~~il~~a~~~g 94 (481)
.+.+.+.+.++|+.+.. ... ++-.. ....+..+++.++.-. .++||+.-- ..++..++..+.+.|
T Consensus 28 ~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (167)
T 3guv_A 28 KSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYG 105 (167)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCC
Confidence 55667777788988643 221 22221 3457888888888765 677776532 235556666666654
No 247
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.72 E-value=1.2e+02 Score=26.72 Aligned_cols=77 Identities=8% Similarity=0.046 Sum_probs=52.5
Q ss_pred EEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHHH
Q 011629 15 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAK 91 (481)
Q Consensus 15 ~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a~ 91 (481)
.|+++..+ +.|.....+.+++.+++.|+.+..... . +.+.....++.+...+++.||+.... ......+.++.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 57888754 356667788889999999988764422 2 33345566777777789999887654 34455677777
Q ss_pred HcCC
Q 011629 92 HLRM 95 (481)
Q Consensus 92 ~~g~ 95 (481)
+.|.
T Consensus 80 ~~~i 83 (306)
T 8abp_A 80 GYDM 83 (306)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6653
No 248
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=36.07 E-value=63 Score=28.01 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=51.4
Q ss_pred EEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC-ceEEEEEeCc-HHHHHHHHHH
Q 011629 15 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYD-IWGLEVLNAA 90 (481)
Q Consensus 15 ~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~-~~vIvl~~~~-~~~~~il~~a 90 (481)
+|+++..+ +.+.....+.+++.+++.|+.+..... ....+.+.....++.+.+.+ .+.||+.... ......+..+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST-KDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 57777743 456677788999999999998765421 11223333445677776667 8888887642 3445666677
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.+.
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66553
No 249
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=36.07 E-value=45 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeee
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA 398 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~ 398 (481)
.++++.-.+++|++++++.++ |......+..|+.|+++.+..
T Consensus 144 a~~iq~~l~~iGI~v~i~~~~---------~~~~~~~~~~~~~d~~~~~w~ 185 (259)
T 3pam_A 144 ALAFQSNLSRLGIHAEIRTVD---------DSQYQNRLGMFNYDMIIGKLK 185 (259)
T ss_dssp HHHHHHHHHTTTCEEEEEECC---------HHHHHHHHHHTCCSEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEecC---------HHHHHHHHhcCCeeEEEeccC
Confidence 455666666789886665554 999999999999999876543
No 250
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=36.02 E-value=35 Score=31.78 Aligned_cols=53 Identities=8% Similarity=-0.076 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccccc
Q 011629 349 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT 404 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~ 404 (481)
.+.+.+.++.|-+++++..+.+. =++...+++++..|.+|++..+......+.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~---Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~ 105 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGE---LVPGLQAADAVTEGTVECCHTVGYYYWGKD 105 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTT---SSCGGGHHHHHHTTSSSEEEECGGGGTTTC
T ss_pred HHHHHHHHhcCCeEEEEEecCCc---ccCHHHHHHHHHcCccceeecchhhhcccC
Confidence 47788888888777788877210 136789999999999999977654444443
No 251
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=35.87 E-value=1.8e+02 Score=23.68 Aligned_cols=71 Identities=14% Similarity=-0.025 Sum_probs=45.4
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVL 87 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il 87 (481)
.|+||.-.+ .-....+.-.+.+++.|+..... ..+...+.+.+.++.++.+..+.+|||....- ..+-.++
T Consensus 14 ~V~IimGS~-SD~~v~~~a~~~l~~~gi~~ev~-V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvv 85 (173)
T 4grd_A 14 LVGVLMGSS-SDWDVMKHAVAILQEFGVPYEAK-VVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGML 85 (173)
T ss_dssp SEEEEESSG-GGHHHHHHHHHHHHHTTCCEEEE-ECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHH
T ss_pred eEEEEeCcH-hHHHHHHHHHHHHHHcCCCEEEE-EEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhh
Confidence 467776322 22346777778888999876544 34444555567777888888889998887553 3333433
No 252
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=35.78 E-value=49 Score=29.74 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHhccCCceEEEE
Q 011629 55 SRNQIIDTLLTVSSMMSRILIL 76 (481)
Q Consensus 55 ~~~~~~~~l~~i~~s~~~vIvl 76 (481)
+..++..+++.+++.+.++|+.
T Consensus 222 s~~~l~~l~~~ik~~~v~~If~ 243 (291)
T 1pq4_A 222 SAQELKQLIDTAKENNLTMVFG 243 (291)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 3344555555555555555544
No 253
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=35.66 E-value=91 Score=27.42 Aligned_cols=77 Identities=10% Similarity=-0.043 Sum_probs=48.7
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
..|+++..+ +.|.....+.+++.+++.|..+.... ...+.+.....++.+...+.+-||+...... ...+..+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 468888854 44566778888999999999876532 2223333456677777778888888654221 23444554
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 93 ~~~ 95 (289)
T 2fep_A 93 RSP 95 (289)
T ss_dssp HSS
T ss_pred hcC
Confidence 544
No 254
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=35.37 E-value=1.8e+02 Score=23.52 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=44.2
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.++..|+..... ..+...+.+.+.+.+++.++.+.+|||..+.-.
T Consensus 7 ~V~IimgS~-SD~~v~~~a~~~l~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 71 (166)
T 3oow_A 7 QVGVIMGSK-SDWSTMKECCDILDNLGIGYECE-VVSAHRTPDKMFDYAETAKERGLKVIIAGAGGA 71 (166)
T ss_dssp EEEEEESSG-GGHHHHHHHHHHHHHTTCEEEEE-ECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred eEEEEECcH-HhHHHHHHHHHHHHHcCCCEEEE-EEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 577777332 22346777778888999876544 334445556677888888888889998876644
No 255
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=35.18 E-value=91 Score=27.56 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=49.5
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCC-EEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNA 89 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~ 89 (481)
+.|+++..+ +.+.....+.+++.+++.|. .+.... ...+.+.....++.+...+.+.||+..... .....+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND---SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec---CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 367888753 34566778888999999997 665432 122333344567777777788888865433 23456666
Q ss_pred HHHcC
Q 011629 90 AKHLR 94 (481)
Q Consensus 90 a~~~g 94 (481)
+.+.+
T Consensus 80 ~~~~~ 84 (309)
T 2fvy_A 80 ARGQN 84 (309)
T ss_dssp HHTTT
T ss_pred HHHCC
Confidence 65554
No 256
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=35.09 E-value=71 Score=28.19 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCcccEEEEe-CCCCCCCCCHHHHHHHHHcccccEEEe-------ee-eecc----------c--cc---
Q 011629 349 DVFTAVLELLPYAVPYKLVP-FGDGHNSPKRFDLLRLVSEEVYDAAVG-------DF-AITT----------E--RT--- 404 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d~~~~-------~~-~~t~----------~--r~--- 404 (481)
.+++.+.+..|++ ++..+ . ++...++.+|.+|++|+... .. ..++ + +.
T Consensus 23 ~~~~~~le~~G~~--Ve~~~~~------g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (275)
T 1sw5_A 23 NMIAILLEENGYK--AEVKEGL------GGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLL 94 (275)
T ss_dssp HHHHHHHHHTTCC--EEECTTC------CSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc--EEEEeCC------CchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhh
Confidence 4566666777966 55554 2 35788999999999999863 11 1110 0 10
Q ss_pred --cceeeccce-eecceEEEEecCCC---CcCccccccCc
Q 011629 405 --KMVDFTQPY-IESGLVVVAPIKKL---NSNAWAFLNPF 438 (481)
Q Consensus 405 --~~~~fs~p~-~~~~~~~~~~~~~~---~~~~~~~l~pf 438 (481)
..+.+-.|+ ......++|++... .+...++|+..
T Consensus 95 ~~~~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~g~ 134 (275)
T 1sw5_A 95 EADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEF 134 (275)
T ss_dssp HHHCCEEEEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTT
T ss_pred hcCCeEEeccCCCCCeeEEEEeHHHHHHcCCCcHHHHHhh
Confidence 134555554 45688999987651 57888899877
No 257
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.99 E-value=2.4e+02 Score=24.92 Aligned_cols=86 Identities=16% Similarity=-0.012 Sum_probs=59.0
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC---
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--- 79 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~--- 79 (481)
.+++-....|=..+.+++ |..+..+..+.|...-+..++.|.....+ . +. + ++...+..+++.|++.+.
T Consensus 83 ~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi-~--d~--~--qi~ea~~~GAD~VlLi~a~L~ 154 (272)
T 3tsm_A 83 ALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFL-F--DP--Y--QVYEARSWGADCILIIMASVD 154 (272)
T ss_dssp HHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCC-C--ST--H--HHHHHHHTTCSEEEEETTTSC
T ss_pred HHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCcc-C--CH--H--HHHHHHHcCCCEEEEcccccC
Confidence 456667778899999888 44555566777776666667777544322 1 21 1 355677889999998864
Q ss_pred cHHHHHHHHHHHHcCCc
Q 011629 80 DIWGLEVLNAAKHLRMM 96 (481)
Q Consensus 80 ~~~~~~il~~a~~~g~~ 96 (481)
...+..++..+.++||.
T Consensus 155 ~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 155 DDLAKELEDTAFALGMD 171 (272)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 35677888889998874
No 258
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=34.70 E-value=1.6e+02 Score=26.46 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=43.6
Q ss_pred cEEEEEEE--e--C-CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 14 RNVIALYV--D--D-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~--d--d-~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
..|++|+. + + .|.....+.+++.+++.|+.+.....- +..+....++.+.+.+.+.||+.+..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~----~~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAS----TDAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECC----SGGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCC----CHHHHHHHHHHHHHcCCCEEEECChh
Confidence 46899985 2 3 455566788888889999887665431 12345567788877889999887643
No 259
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=34.66 E-value=61 Score=30.38 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=48.1
Q ss_pred hHHHHHHcCC---cEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC---ceEEEEE
Q 011629 4 IADIVDYFGW---RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM---SRILILH 77 (481)
Q Consensus 4 i~~ll~~fgW---~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~---~~vIvl~ 77 (481)
+.++++.++. +++.+|++..-.. ..+.+.+++.|+.+.....+..+.+.+.+.+.++.+++.+ +++||..
T Consensus 41 l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIav 116 (375)
T 3rf7_A 41 LDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGL 116 (375)
T ss_dssp HHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 4567777764 6777777543222 1366677777887654445555666667777777777765 8999988
Q ss_pred eCc
Q 011629 78 TYD 80 (481)
Q Consensus 78 ~~~ 80 (481)
+..
T Consensus 117 GGG 119 (375)
T 3rf7_A 117 GGG 119 (375)
T ss_dssp ESH
T ss_pred CCc
Confidence 764
No 260
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=34.52 E-value=1.8e+02 Score=23.39 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=42.8
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.+++.|+..... ..+...+.+.+.++.++.++.+.+|||..+...
T Consensus 5 ~V~Iimgs~-SD~~v~~~a~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 69 (163)
T 3ors_A 5 KVAVIMGSS-SDWKIMQESCNMLDYFEIPYEKQ-VVSAHRTPKMMVQFASEARERGINIIIAGAGGA 69 (163)
T ss_dssp CEEEEESCG-GGHHHHHHHHHHHHHTTCCEEEE-ECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred eEEEEECcH-HHHHHHHHHHHHHHHcCCCEEEE-EECCcCCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 467766332 22346777778888999986544 344445555677777788888889988876543
No 261
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=34.04 E-value=54 Score=29.45 Aligned_cols=53 Identities=15% Similarity=-0.033 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccc
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTER 403 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r 403 (481)
-.+.+.+.++.|=+++++..+.+ .- ++-..+++++..|.+|++..+......+
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g--~L-g~~~~~~e~v~~G~id~~~~~~~~~~~~ 73 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNS--TL-LKRPEVKRGVQQGVVQIGEVLVSALGNE 73 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTT--SS-SCGGGHHHHHHHTSSSEEEEEGGGGTTT
T ss_pred HHHHHHHHHHcCCeEEEEEccch--hh-CChHHHHHHHHCCCeeeehhhhhhhhcc
Confidence 35778888888878778777621 10 3467999999999999987765444333
No 262
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=33.76 E-value=77 Score=26.30 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=45.3
Q ss_pred HHcCCcEEEEEEEeCC--cc---cchHHHHHHHHHh---cCCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeC
Q 011629 9 DYFGWRNVIALYVDDD--HG---RNGIAALGDKLAE---KRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 79 (481)
Q Consensus 9 ~~fgW~~V~ii~~dd~--~g---~~~~~~l~~~l~~---~gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~ 79 (481)
..+.=-+|+||...|+ .| ......|.+.+++ .|+.+.....++. +.+.+...+++..+ .++++||..+-
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 3444457888887654 12 2446678888887 7888887776754 34466677766543 36899988765
Q ss_pred c
Q 011629 80 D 80 (481)
Q Consensus 80 ~ 80 (481)
.
T Consensus 88 t 88 (189)
T 1jlj_A 88 T 88 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 263
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=33.61 E-value=1.8e+02 Score=23.61 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=43.1
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.+++.|+..... ..+...+.+...++.++.++.+.+|||....-.
T Consensus 14 ~V~IimGS~-SD~~v~~~a~~~L~~~Gi~~ev~-V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 78 (174)
T 3kuu_A 14 KIAIVMGSK-SDWATMQFAADVLTTLNVPFHVE-VVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGA 78 (174)
T ss_dssp CEEEEESSG-GGHHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESS
T ss_pred cEEEEECcH-HHHHHHHHHHHHHHHcCCCEEEE-EEcccCCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 577777332 22346777778888999986544 344445555677777777778889988875543
No 264
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=33.45 E-value=66 Score=28.48 Aligned_cols=79 Identities=9% Similarity=-0.018 Sum_probs=52.4
Q ss_pred EEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCC-CChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHH
Q 011629 15 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 90 (481)
Q Consensus 15 ~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a 90 (481)
+|+++..+ +.|.....+.+++.+++.|+.+.... ... .+.+.....++.+...+.+.||+.... ......+.++
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILA--PPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEEC--CCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57787754 45667788889999999999887543 111 233445567777777788888876543 3335566667
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.|.
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 66553
No 265
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=33.37 E-value=56 Score=29.71 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccccc--ceeeccceeecceEEEEecCC
Q 011629 349 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTK--MVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~--~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.+++.+.+.-+.+ +.+.. +.-...+.++.+|++|+++.+-.++++... .+ -..|+...+++++++++.
T Consensus 18 ~~~~~f~~~p~v~--i~v~~-------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l-~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 18 KWADTYQKETGNK--VNYQG-------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGL-FQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHHCCE--EEEEE-------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTE-EEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHhcCCce--EEEec-------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCC-EEeeeeeeeEEEEEeCCC
Confidence 4555555533544 55555 457789999999999999876655544321 01 246899999999998764
No 266
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=33.16 E-value=50 Score=28.05 Aligned_cols=69 Identities=7% Similarity=-0.009 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeeccc--ccc---ceee--ccceeecceEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE--RTK---MVDF--TQPYIESGLVV 420 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~--r~~---~~~f--s~p~~~~~~~~ 420 (481)
-++++.+.++.|.+ +.+.. ++-..++..+. +.+|+.+++-....+ .++ .++. ..++.....++
T Consensus 16 ~~~~~~F~~~~gi~--V~~~~-------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 85 (237)
T 2hxw_A 16 KDIANKYSEKTGVK--VNVNF-------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAII 85 (237)
T ss_dssp HHHHHHHHHHHCCC--EEEEE-------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCce--EEEEe-------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEE
Confidence 36777787778866 44443 44667888888 899998775421111 111 2332 24677888888
Q ss_pred EEecCC
Q 011629 421 VAPIKK 426 (481)
Q Consensus 421 ~~~~~~ 426 (481)
++++++
T Consensus 86 ~~~~~~ 91 (237)
T 2hxw_A 86 LTQKGN 91 (237)
T ss_dssp EESTTC
T ss_pred EEeCCC
Confidence 888765
No 267
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=32.40 E-value=2e+02 Score=23.28 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=43.6
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.+++.|+...... .+...+.+...++.++..+.+.+|||....-.
T Consensus 8 ~V~IimgS~-SD~~v~~~a~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 72 (169)
T 3trh_A 8 FVAILMGSD-SDLSTMETAFTELKSLGIPFEAHI-LSAHRTPKETVEFVENADNRGCAVFIAAAGLA 72 (169)
T ss_dssp EEEEEESCG-GGHHHHHHHHHHHHHTTCCEEEEE-CCTTTSHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred cEEEEECcH-HhHHHHHHHHHHHHHcCCCEEEEE-EcccCCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 577777332 223467777788889999866443 34444555677777777778899988876644
No 268
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=32.11 E-value=1.2e+02 Score=28.18 Aligned_cols=85 Identities=6% Similarity=0.043 Sum_probs=52.5
Q ss_pred cEEEEEEEe----CCcccchHHHHHHHHHhcC--CEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHH
Q 011629 14 RNVIALYVD----DDHGRNGIAALGDKLAEKR--CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 87 (481)
Q Consensus 14 ~~V~ii~~d----d~~g~~~~~~l~~~l~~~g--i~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il 87 (481)
.+|++|+.+ ..|.....+.+++..++.| +.+.+.+..+ +.++..+.++.+.+.+.++||..+.. ....+.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~---~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~~~~ 102 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA---EGADAERSIKRIARAGNKLIFTTSFG-YMDPTV 102 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC---TTHHHHHHHHHHHHTTCSEEEECSGG-GHHHHH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC---CHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHH
Confidence 479999954 2455566777777778888 7766554432 22356778888888889987775433 233344
Q ss_pred HHHHHcCCccCCeEEEEec
Q 011629 88 NAAKHLRMMESGYVWIVTD 106 (481)
Q Consensus 88 ~~a~~~g~~~~~~~wI~~~ 106 (481)
..|.+. ++..++..+
T Consensus 103 ~vA~~~----Pdv~fv~id 117 (356)
T 3s99_A 103 KVAKKF----PDVKFEHAT 117 (356)
T ss_dssp HHHTTC----TTSEEEEES
T ss_pred HHHHHC----CCCEEEEEe
Confidence 444332 344555554
No 269
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=31.82 E-value=93 Score=26.81 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccc----ccceeecc---ceeecceEEEE
Q 011629 350 VFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTER----TKMVDFTQ---PYIESGLVVVA 422 (481)
Q Consensus 350 l~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r----~~~~~fs~---p~~~~~~~~~~ 422 (481)
++.+... -|.+ +++++ .+.+.++.+|.+|++|.++-...-..++ .....+.. +.-.+..++++
T Consensus 126 ~lt~~~~-~g~~--Ve~ve-------~~y~~~i~~L~~G~IDA~Iwn~d~~~a~~~~~l~~~~l~~~~~~~~~~eavI~v 195 (231)
T 2ozz_A 126 IMTDVFF-GDSD--VERVD-------LSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLT 195 (231)
T ss_dssp HHHHHHH-TTSC--CEEEE-------CCHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTCEEEEE
T ss_pred HHHhhhc-CCCe--EEEEE-------CCHHHHHHHHHcCCccEEEEcCcchhhhcCCCcceeccccccccccCCceEEEE
Confidence 3444433 5655 55665 4689999999999999887633332222 12445544 44456777888
Q ss_pred ecCC
Q 011629 423 PIKK 426 (481)
Q Consensus 423 ~~~~ 426 (481)
++++
T Consensus 196 ~k~n 199 (231)
T 2ozz_A 196 RVDD 199 (231)
T ss_dssp ETTC
T ss_pred ECCC
Confidence 8876
No 270
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=31.69 E-value=56 Score=29.40 Aligned_cols=51 Identities=12% Similarity=-0.100 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecc
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT 401 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~ 401 (481)
..+.+.+.++.|=+++++..+.+. -++-..+++++..|.+|++..+.....
T Consensus 20 ~~fa~~v~~~s~G~i~i~~~~~g~---Lg~~~~~~~~v~~G~id~~~~~~~~~~ 70 (301)
T 2pfz_A 20 TQFVKDVDSLSGGKLKITLHNNAS---LYKAPEIKRAVQGNQAQIGEILLTNFA 70 (301)
T ss_dssp HHHHHHHHHHHTTSCEEEEECTTS---SSCGGGHHHHHHTTSSSEEEEEGGGGT
T ss_pred HHHHHHHHHHcCCeEEEEEccCcc---cCChHHHHHHHHCCceeeEechhhhcc
Confidence 356777888887777788776211 134679999999999999977654433
No 271
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.64 E-value=1.2e+02 Score=26.20 Aligned_cols=78 Identities=8% Similarity=0.002 Sum_probs=49.0
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
+.|+++..+ +.|.....+.+++.++++|..+.... . ..+.+.-...++.+...+.+-||+..... .....+..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~--~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD--S-QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE--C-TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC--C-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467888754 34566778888999999998876532 1 22222334556777777888888865432 223455566
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 79 ~~~~ 82 (271)
T 2dri_A 79 NQAN 82 (271)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 5555
No 272
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.35 E-value=67 Score=27.96 Aligned_cols=75 Identities=9% Similarity=0.001 Sum_probs=48.8
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHH-HH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN-AA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~-~a 90 (481)
+.|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.....++.+...+.+-||+..... ..+. .+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~~~l 82 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGN---SDNDIKKAQGYLATFVSHNCTGMISTAFNE---NIIENTL 82 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCh---HHHHHHH
Confidence 458888854 44566778889999999999876532 222333445677777778899998876332 3355 55
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.|
T Consensus 83 ~~~~ 86 (277)
T 3e61_A 83 TDHH 86 (277)
T ss_dssp HHC-
T ss_pred HcCC
Confidence 5554
No 273
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=31.24 E-value=1e+02 Score=27.82 Aligned_cols=81 Identities=11% Similarity=-0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeec------cccc-cceeeccce-eecceE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT------TERT-KMVDFTQPY-IESGLV 419 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t------~~r~-~~~~fs~p~-~~~~~~ 419 (481)
..+++.+-+.+|+++++... .+-.-+..+|.+|++|+.......+ .... ..+..-.|+ ......
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 95 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQG 95 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEE
Confidence 35666777788976444221 2467788999999999986433221 1111 123333443 456788
Q ss_pred EEEecCC---CCcCcccccc
Q 011629 420 VVAPIKK---LNSNAWAFLN 436 (481)
Q Consensus 420 ~~~~~~~---~~~~~~~~l~ 436 (481)
++|++.. ..+..+++|+
T Consensus 96 l~V~~~~a~~~~i~si~DL~ 115 (309)
T 1r9l_A 96 YLIDKKTADQYKITNIAQLK 115 (309)
T ss_dssp EEEEHHHHHHHTCCBGGGGG
T ss_pred EEEchhhhhhcCCCCHHHHc
Confidence 9998763 1467777886
No 274
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=31.19 E-value=27 Score=32.66 Aligned_cols=71 Identities=7% Similarity=0.010 Sum_probs=45.7
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+.+.++.+|.+++-||++....| ..+.+.+.++ -.+.+. .+..+.+.+...+.++..++.++++||..+..
T Consensus 28 l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (364)
T 3iv7_A 28 LKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGG 98 (364)
T ss_dssp HHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 46788999999998888554322 2333333333 223333 23334556677788888888899999988764
No 275
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=31.14 E-value=96 Score=27.94 Aligned_cols=78 Identities=8% Similarity=-0.032 Sum_probs=49.3
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCC--ceEEEEEeCcHH-HHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIW-GLEVLN 88 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~--~~vIvl~~~~~~-~~~il~ 88 (481)
..|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+ .+.||+...... ....+.
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~---~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLT---TEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEE---CTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec---CCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 368888853 34556678888889999998876542 1223333445666766667 888888765433 335566
Q ss_pred HHHHcC
Q 011629 89 AAKHLR 94 (481)
Q Consensus 89 ~a~~~g 94 (481)
.+.+.+
T Consensus 83 ~~~~~~ 88 (332)
T 2rjo_A 83 ACSKAG 88 (332)
T ss_dssp HHHHHT
T ss_pred HHHHCC
Confidence 665544
No 276
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.10 E-value=76 Score=28.20 Aligned_cols=84 Identities=5% Similarity=-0.091 Sum_probs=51.4
Q ss_pred HHHcCCcEEEEEEEe-------CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 8 VDYFGWRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 8 l~~fgW~~V~ii~~d-------d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
|+.-.=..|+++..+ +.|.....+.+++.+++.|..+... ....+.+.....++.+...+.+-||+....
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 333344678988866 3456677888899999999887642 222222334566777888888988886543
Q ss_pred HHHHHHHHHHHHcCC
Q 011629 81 IWGLEVLNAAKHLRM 95 (481)
Q Consensus 81 ~~~~~il~~a~~~g~ 95 (481)
.. ...+..+.+.+.
T Consensus 94 ~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 94 KD-DPIEHLLNEFKV 107 (305)
T ss_dssp TT-CHHHHHHHHTTC
T ss_pred CC-cHHHHHHHHcCC
Confidence 22 144555555553
No 277
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.02 E-value=88 Score=27.47 Aligned_cols=77 Identities=4% Similarity=-0.001 Sum_probs=47.3
Q ss_pred cEEEEEEEe--C--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHH
Q 011629 14 RNVIALYVD--D--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 89 (481)
Q Consensus 14 ~~V~ii~~d--d--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~ 89 (481)
+.||++..+ + .|.....+.+++.+++.|..+..... ..+.+......+.+...+.+-||+...... ...+..
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 84 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---IHAKDSMVPIRYILETGSADGVIISKIEPN-DPRVRF 84 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---SSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHHH
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---CcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHHHH
Confidence 568888864 2 56667788899999999988765421 112222334455566677888888754322 134555
Q ss_pred HHHcC
Q 011629 90 AKHLR 94 (481)
Q Consensus 90 a~~~g 94 (481)
+.+.+
T Consensus 85 l~~~~ 89 (288)
T 3gv0_A 85 MTERN 89 (288)
T ss_dssp HHHTT
T ss_pred HhhCC
Confidence 55554
No 278
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=30.81 E-value=1.6e+02 Score=26.17 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=55.9
Q ss_pred CceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEee
Q 011629 317 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 396 (481)
Q Consensus 317 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~ 396 (481)
.+++++|+.. .. ...+-..++..+.++.. ++++.+.. .+...+...|.+|++|+++..
T Consensus 92 ~g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 92 KGSLYVATTH--TQ------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp EEEEEEEECH--HH------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEES
T ss_pred CCeEEEEech--hh------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEe
Confidence 3678888863 11 11334678888888774 35576666 557889999999999999763
Q ss_pred eeeccccccceeeccceeecceEEEEecCC
Q 011629 397 FAITTERTKMVDFTQPYIESGLVVVAPIKK 426 (481)
Q Consensus 397 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 426 (481)
.. +.....+.+ .+.....+.++++++.
T Consensus 150 ~~--~~~~~~l~~-~~L~~~~~~~v~~~~~ 176 (324)
T 1al3_A 150 EA--LHLYDDLVM-LPCYHWNRSIVVTPEH 176 (324)
T ss_dssp SC--CCTTSCEEE-EEEEEECEEEEECTTS
T ss_pred cC--CCCCCCeeE-EEecCCceEEEEcCCC
Confidence 22 111223333 6777888888887654
No 279
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=30.73 E-value=74 Score=29.39 Aligned_cols=69 Identities=10% Similarity=-0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccccc---ceeeccceeecceEEEEecC
Q 011629 349 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTK---MVDFTQPYIESGLVVVAPIK 425 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~---~~~fs~p~~~~~~~~~~~~~ 425 (481)
.++..+.+... .+++.+.. +.-.+.+.++.+|++|+++....++.+..+ .+ ...|+...+++++++.+
T Consensus 43 ~~~~~f~~~~p-~v~i~v~~-------~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lvvvvn~~ 113 (350)
T 1pc3_A 43 LWGPAFHERYP-NVTITAQG-------TGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQVNYNLP 113 (350)
T ss_dssp HHHHHHHHHST-TEEEECCB-------CCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEEEEECCT
T ss_pred HHHHHHHHHCC-CceEEEec-------CCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEEEEEeCC
Confidence 44555555431 24455444 457789999999999999877666554321 12 24689999999999876
Q ss_pred C
Q 011629 426 K 426 (481)
Q Consensus 426 ~ 426 (481)
.
T Consensus 114 ~ 114 (350)
T 1pc3_A 114 G 114 (350)
T ss_dssp T
T ss_pred c
Confidence 5
No 280
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.42 E-value=73 Score=28.19 Aligned_cols=77 Identities=5% Similarity=-0.064 Sum_probs=49.1
Q ss_pred cEEEEEEE-------eCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHH
Q 011629 14 RNVIALYV-------DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 86 (481)
Q Consensus 14 ~~V~ii~~-------dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~i 86 (481)
+.||+|.. ++.|.....+.+++.+++.|..+... ....+.+.-...++.+...+.+-||+...... ...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~ 83 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DPI 83 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CHH
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hHH
Confidence 46888872 34566678889999999999987542 22222233456677787788888888654322 234
Q ss_pred HHHHHHcC
Q 011629 87 LNAAKHLR 94 (481)
Q Consensus 87 l~~a~~~g 94 (481)
+..+.+.+
T Consensus 84 ~~~l~~~~ 91 (295)
T 3hcw_A 84 KQMLIDES 91 (295)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 55555554
No 281
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.41 E-value=1.7e+02 Score=26.47 Aligned_cols=77 Identities=8% Similarity=-0.058 Sum_probs=51.1
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
+.|+++..+ +.+.....+.+++.+.+.|+.+.... ...+.+.....++.+...+.+-||+....... ..+..+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV---TDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE---CTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 478998854 45666788899999999999876432 22233344566777777888888887653222 4455555
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 145 ~~~ 147 (344)
T 3kjx_A 145 AAG 147 (344)
T ss_dssp HCS
T ss_pred hCC
Confidence 555
No 282
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.30 E-value=1.2e+02 Score=26.89 Aligned_cols=78 Identities=8% Similarity=-0.092 Sum_probs=48.5
Q ss_pred EEEEEEEeCC-cccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHHHH
Q 011629 15 NVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAKH 92 (481)
Q Consensus 15 ~V~ii~~dd~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a~~ 92 (481)
.|+++..+.. |.....+.+++.+++.|+.+.... +...+.+.....++.+...+.+.||+.... ......+..+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777764322 666678888888999998876532 112233334456777766778888876543 333455666666
Q ss_pred cC
Q 011629 93 LR 94 (481)
Q Consensus 93 ~g 94 (481)
.|
T Consensus 81 ~~ 82 (313)
T 2h3h_A 81 MG 82 (313)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 283
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=29.89 E-value=1.9e+02 Score=26.08 Aligned_cols=73 Identities=11% Similarity=-0.094 Sum_probs=50.7
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCC-hhHHHHHHHHhc-cCCceEEEEEeCc-----HHHHHHH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVS-SMMSRILILHTYD-----IWGLEVL 87 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~-~~~~~~~l~~i~-~s~~~vIvl~~~~-----~~~~~il 87 (481)
.|++|..... ....+...+.+.|+-+.....+-.... .-++.+.++.+. +..+++|+++... .+.+.++
T Consensus 154 ~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~ 229 (305)
T 2fp4_A 154 RIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFL 229 (305)
T ss_dssp EEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHH
T ss_pred CEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHH
Confidence 4777775553 355667788888887777666654431 235777787765 4689999999885 4688888
Q ss_pred HHHH
Q 011629 88 NAAK 91 (481)
Q Consensus 88 ~~a~ 91 (481)
+.+.
T Consensus 230 ~~~~ 233 (305)
T 2fp4_A 230 KQHN 233 (305)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 8764
No 284
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=29.82 E-value=91 Score=27.56 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=44.1
Q ss_pred cEEEEEEE-eCCcccchHHHHHHHHHhcCC---EEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYV-DDDHGRNGIAALGDKLAEKRC---RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~-dd~~g~~~~~~l~~~l~~~gi---~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+.||++-. ++.+.....+.+++.+.++|. .+..... ....+.+.....++++.+.+.+.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 46888731 244566778899999999998 6554322 22234445567788888888999988753
No 285
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=29.24 E-value=1e+02 Score=27.18 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=49.2
Q ss_pred cEEEEEEE------eCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHH
Q 011629 14 RNVIALYV------DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 87 (481)
Q Consensus 14 ~~V~ii~~------dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il 87 (481)
+.||++.. ++.|.....+.+++.+.+.|..+.....-. .. .....++.+...+.+-||+....... ..+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~--~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP--GE--KYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TC--CCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC--hh--hHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 46888886 234566778888999999999877654321 11 23456667777778888887543222 445
Q ss_pred HHHHHcCC
Q 011629 88 NAAKHLRM 95 (481)
Q Consensus 88 ~~a~~~g~ 95 (481)
..+.+.++
T Consensus 82 ~~l~~~~i 89 (294)
T 3qk7_A 82 QYLQKQNF 89 (294)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 55555543
No 286
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=29.22 E-value=1.4e+02 Score=27.96 Aligned_cols=85 Identities=9% Similarity=-0.071 Sum_probs=52.8
Q ss_pred HHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhc------CCEEEEEEecCC---CCChhHHHHHHHHhccCC--c---e
Q 011629 7 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK------RCRLSHKVPLSP---KGSRNQIIDTLLTVSSMM--S---R 72 (481)
Q Consensus 7 ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~------gi~v~~~~~~~~---~~~~~~~~~~l~~i~~s~--~---~ 72 (481)
+++.++-+++.+|++..... ...+.+.+.+++. |+.+.. ..++. +.+.+.+....+.+++.+ . +
T Consensus 30 ~~~~~~~~k~liVtd~~v~~-~~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d 107 (393)
T 1sg6_A 30 LISDCSSTTYVLVTDTNIGS-IYTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDT 107 (393)
T ss_dssp HHHHSCCSEEEEEEEHHHHH-HHHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTC
T ss_pred HHHhcCCCeEEEEECCcHHH-HHHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCC
Confidence 35778889999998654332 2566777777776 777643 33444 234456677777777766 6 8
Q ss_pred EEEEEeCc--HHHHHHHHHHHHc
Q 011629 73 ILILHTYD--IWGLEVLNAAKHL 93 (481)
Q Consensus 73 vIvl~~~~--~~~~~il~~a~~~ 93 (481)
+||..+.. -++..+....+..
T Consensus 108 ~iIalGGGsv~D~ak~~Aa~~~r 130 (393)
T 1sg6_A 108 VVIALGGGVIGDLTGFVASTYMR 130 (393)
T ss_dssp EEEEEESHHHHHHHHHHHHHGGG
T ss_pred EEEEECCcHHHHHHHHHHHHhcC
Confidence 88877653 4555555444433
No 287
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=28.58 E-value=1.3e+02 Score=28.39 Aligned_cols=81 Identities=9% Similarity=-0.077 Sum_probs=51.2
Q ss_pred HHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC---CChhHHHHHHHHhccCCc---eEEEEEeCc
Q 011629 7 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK---GSRNQIIDTLLTVSSMMS---RILILHTYD 80 (481)
Q Consensus 7 ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~---~~~~~~~~~l~~i~~s~~---~vIvl~~~~ 80 (481)
+++.++-+++.||++...+ ....+.+.+.+++.|+.+... .++.. .+.+.+...++.+++.+. ++||..+..
T Consensus 56 ~l~~~~~~rvlIVtd~~v~-~~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVA-PLYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTH-HHHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHH-HHHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 3444567899988865544 336788889999999887543 23332 344566777777776555 688777653
Q ss_pred --HHHHHHHHH
Q 011629 81 --IWGLEVLNA 89 (481)
Q Consensus 81 --~~~~~il~~ 89 (481)
-++..+...
T Consensus 134 sv~D~ak~~Aa 144 (390)
T 3okf_A 134 VIGDLVGFAAA 144 (390)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 344444433
No 288
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=28.49 E-value=1.1e+02 Score=27.14 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=43.5
Q ss_pred cEEEEEEEe---C-CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD---D-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d---d-~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
..|++|+.+ + .|.....+.+++.+++.|+.+..... ..+.++....++.+.+.+.+.||+.+.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEG---VNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECC---CCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 468888852 3 56667788899999999998764322 222234556778887788999888654
No 289
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=28.41 E-value=1e+02 Score=27.05 Aligned_cols=77 Identities=6% Similarity=-0.069 Sum_probs=47.7
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHH---HHHHhccCCceEEEEEeCcHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIID---TLLTVSSMMSRILILHTYDIWGLEVLN 88 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~---~l~~i~~s~~~vIvl~~~~~~~~~il~ 88 (481)
..|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.... .++.+...+.+.||+...... ...+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 84 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT---GCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDLD 84 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC---CCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHH
Confidence 468888743 44566778888999999999876432 1222223345 677777778888888654322 23444
Q ss_pred HHHHcC
Q 011629 89 AAKHLR 94 (481)
Q Consensus 89 ~a~~~g 94 (481)
.+.+.+
T Consensus 85 ~l~~~~ 90 (290)
T 2rgy_A 85 ELHRMH 90 (290)
T ss_dssp HHHHHC
T ss_pred HHhhcC
Confidence 554444
No 290
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.37 E-value=52 Score=29.04 Aligned_cols=77 Identities=9% Similarity=-0.122 Sum_probs=49.8
Q ss_pred cEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
..|+++..+. .+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+..... ....+..+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~~ 84 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLAN---TAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRTEL 84 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHSS
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHhh
Confidence 5688888543 4555678888999999999877542 222333445677777778889888876543 234444444
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 85 ~~~ 87 (291)
T 3egc_A 85 PKT 87 (291)
T ss_dssp CTT
T ss_pred ccC
Confidence 433
No 291
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.44 E-value=1.4e+02 Score=26.03 Aligned_cols=79 Identities=6% Similarity=0.040 Sum_probs=48.6
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc-HHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~-~~~~~il~~a 90 (481)
+.|+++..+ +.|.....+.+++.+++.|+.+.... ...+.+.-...++.+...+.+-||+.... ......+..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVED---SQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEec---CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 367888754 34566778888889999999876542 12222233455666667778888876543 2223455666
Q ss_pred HHcCC
Q 011629 91 KHLRM 95 (481)
Q Consensus 91 ~~~g~ 95 (481)
.+.|.
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66553
No 292
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.34 E-value=3.5e+02 Score=24.47 Aligned_cols=74 Identities=16% Similarity=0.023 Sum_probs=48.0
Q ss_pred CcEEEEEEEeCCccc----chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHH
Q 011629 13 WRNVIALYVDDDHGR----NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 88 (481)
Q Consensus 13 W~~V~ii~~dd~~g~----~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~ 88 (481)
-+++.+|+ +...|. ...+.+.+.+++.|+.+..... .... +.....++....+.+.||+++-...+..++.
T Consensus 24 m~~i~vI~-NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t--~~~~--~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~ 98 (337)
T 2qv7_A 24 RKRARIIY-NPTSGKEQFKRELPDALIKLEKAGYETSAYAT--EKIG--DATLEAERAMHENYDVLIAAGGDGTLNEVVN 98 (337)
T ss_dssp CEEEEEEE-CTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC--CSTT--HHHHHHHHHTTTTCSEEEEEECHHHHHHHHH
T ss_pred cceEEEEE-CCCCCCCchHHHHHHHHHHHHHcCCeEEEEEe--cCcc--hHHHHHHHHhhcCCCEEEEEcCchHHHHHHH
Confidence 46788888 443442 3456788888999987665432 1212 3445555665666788888888777777777
Q ss_pred HHH
Q 011629 89 AAK 91 (481)
Q Consensus 89 ~a~ 91 (481)
.+.
T Consensus 99 ~l~ 101 (337)
T 2qv7_A 99 GIA 101 (337)
T ss_dssp HHT
T ss_pred HHH
Confidence 663
No 293
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.26 E-value=1.1e+02 Score=26.34 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=47.5
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
+.|+++..+ +.+.....+.+++.++++|..+.... ...+.+.....++.+...+.+.||+...... ...+..+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 368888754 34556678888999999998865432 1223333455677777777888887754322 23444554
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 80 ~~~ 82 (275)
T 3d8u_A 80 ASN 82 (275)
T ss_dssp HHT
T ss_pred hCC
Confidence 444
No 294
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.16 E-value=1.2e+02 Score=25.26 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=41.2
Q ss_pred EEEEEEEeCCc--c---cchHHHHHHHHHhcCCE--EEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeCc
Q 011629 15 NVIALYVDDDH--G---RNGIAALGDKLAEKRCR--LSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYD 80 (481)
Q Consensus 15 ~V~ii~~dd~~--g---~~~~~~l~~~l~~~gi~--v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~~ 80 (481)
+|+||...|+- | ......|.+.+++.|.. +.....++. +.+.+...+++..+. ++++||..+-.
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~D--d~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPD--EQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEES--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 68888876643 2 23567788888888876 454445543 344666777766553 68999887654
No 295
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=27.05 E-value=1.1e+02 Score=27.08 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=49.7
Q ss_pred CCcEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHH
Q 011629 12 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 89 (481)
Q Consensus 12 gW~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~ 89 (481)
.=..|+++..+ +.|.....+.+++.+++.|..+..... ..+.+.....++.+...+.+-||+..........+..
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 33568888854 346677888999999999998765421 2233344567788888889998887643322114555
Q ss_pred HHH
Q 011629 90 AKH 92 (481)
Q Consensus 90 a~~ 92 (481)
+.+
T Consensus 91 l~~ 93 (303)
T 3kke_A 91 VLE 93 (303)
T ss_dssp HHT
T ss_pred HhC
Confidence 544
No 296
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=26.80 E-value=2.5e+02 Score=22.69 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=41.2
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||... +.-....+...+.+++.|+...... .+...+.+.+.++.++.++.+.+|||..+.-.
T Consensus 13 ~V~IimGS-~SD~~v~~~a~~~L~~~Gi~~dv~V-~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~a 77 (170)
T 1xmp_A 13 LVGVIMGS-TSDWETMKYACDILDELNIPYEKKV-VSAHRTPDYMFEYAETARERGLKVIIAGAGGA 77 (170)
T ss_dssp SEEEEESS-GGGHHHHHHHHHHHHHTTCCEEEEE-CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred cEEEEECc-HHHHHHHHHHHHHHHHcCCCEEEEE-EeccCCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 35666522 2223567777778889998865442 33444555666667777777788988876543
No 297
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=26.51 E-value=3.4e+02 Score=26.24 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=51.6
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCC-----ChhHHHHHHHHhcc-CCceEEEEEeCc---HHHHH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-----SRNQIIDTLLTVSS-MMSRILILHTYD---IWGLE 85 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-----~~~~~~~~l~~i~~-s~~~vIvl~~~~---~~~~~ 85 (481)
.|++|..+.. ....+...+.+.|+-+.....+-... ..-++...++.+.+ ..+++|+++... ...+.
T Consensus 114 ~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~ 189 (480)
T 3dmy_A 114 NIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLK 189 (480)
T ss_dssp EEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHH
T ss_pred CEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHH
Confidence 5777776553 45667778888898887776665441 23357778887754 689999999863 33477
Q ss_pred HHHHHHHc
Q 011629 86 VLNAAKHL 93 (481)
Q Consensus 86 il~~a~~~ 93 (481)
++..|.+.
T Consensus 190 f~~~ar~~ 197 (480)
T 3dmy_A 190 IVNAMKAT 197 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877653
No 298
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=26.45 E-value=1.7e+02 Score=25.33 Aligned_cols=64 Identities=11% Similarity=-0.045 Sum_probs=43.1
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
..|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.....++.+...+.+.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 468888853 44556678888889999998876532 22233344556777777778888887543
No 299
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=26.42 E-value=2.5e+02 Score=22.40 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=40.8
Q ss_pred EEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCC-ChhHHH-HHHHHhccC-CceEEEEEeCc
Q 011629 16 VIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQII-DTLLTVSSM-MSRILILHTYD 80 (481)
Q Consensus 16 V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-~~~~~~-~~l~~i~~s-~~~vIvl~~~~ 80 (481)
|-|....|.-|....+.+.+.|++.|..|...-..+... +..++. ...+.+.+. ..+-|++|++.
T Consensus 13 ~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 80 (155)
T 1o1x_A 13 VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTG 80 (155)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred eeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 444555677889999999999999999987654433221 223343 333445443 34666666664
No 300
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=26.36 E-value=1.1e+02 Score=24.66 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=41.6
Q ss_pred cEEEEEEEeCCc--cc---chHHHHHHHHHhc-----CCEEEEEEecCCCCChhHHHHHHHHhcc-CCceEEEEEeCc
Q 011629 14 RNVIALYVDDDH--GR---NGIAALGDKLAEK-----RCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 80 (481)
Q Consensus 14 ~~V~ii~~dd~~--g~---~~~~~l~~~l~~~-----gi~v~~~~~~~~~~~~~~~~~~l~~i~~-s~~~vIvl~~~~ 80 (481)
-+|+||...|+- |+ .....+.+.+.+. |+.+.....++. +.+.+.+.+++..+ .++++||..+-.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 368888866532 11 2234566777777 888877766654 34466777776653 468999887643
No 301
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.33 E-value=98 Score=25.31 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred EEEEEEEeCCc--c---cchHHHHHHHHH---hcCCEEEEEEecCCCCChhHHHHHHHHhccC-CceEEEEEeCc
Q 011629 15 NVIALYVDDDH--G---RNGIAALGDKLA---EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYD 80 (481)
Q Consensus 15 ~V~ii~~dd~~--g---~~~~~~l~~~l~---~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s-~~~vIvl~~~~ 80 (481)
+|+||...|+- | ......|.+.++ +.|+.+ ....++. +.+.+...+++..+. ++++||..+-.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPD--ERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 68888866541 2 234566777666 889988 5555543 344677777766543 68999988643
No 302
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=26.09 E-value=85 Score=26.95 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=36.3
Q ss_pred cEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHH
Q 011629 14 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a 90 (481)
++|.++..+. ....|.+.|++.|+.|.....+.......+.....+.+.....++ |++.++..+..++..+
T Consensus 121 ~~vL~~rg~~-----~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~ 191 (240)
T 3mw8_A 121 KQIVIVRGKG-----GREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDT-IVVTSGEVLENLINLV 191 (240)
T ss_dssp CEEEEEEESS-----SCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCE-EECCSHHHHHHHHHHS
T ss_pred CEEEEEeCCC-----cHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCE-EEEcCHHHHHHHHHHc
Confidence 4555554332 345677788888887665554432211111222333343333444 4556666666666553
No 303
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=26.07 E-value=84 Score=27.66 Aligned_cols=79 Identities=8% Similarity=-0.063 Sum_probs=48.3
Q ss_pred CcEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHH
Q 011629 13 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 90 (481)
Q Consensus 13 W~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a 90 (481)
=..|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+-||+.........++..+
T Consensus 20 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~ 96 (293)
T 2iks_A 20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIAC---SEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW 96 (293)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT
T ss_pred CcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEc---CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH
Confidence 3578888854 34556778888889999998876532 122333344567777777788888865432222344444
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 97 ~~~~ 100 (293)
T 2iks_A 97 ANDP 100 (293)
T ss_dssp TTSS
T ss_pred HhCC
Confidence 3333
No 304
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=25.91 E-value=1.9e+02 Score=23.27 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=50.6
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 82 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~ 82 (481)
.+....++++-+.+.++- |........+.+.+.+.-.|+.+.+. +.++....+++-+..+-++.+++-++.+
T Consensus 20 V~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~p~d 91 (165)
T 1vsq_C 20 VATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVV-------DVAKMIRVYNNPKYAGERVMLLFTNPTD 91 (165)
T ss_dssp HHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESSHHH
T ss_pred eeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhccccCCcEEEEEECCHHH
Confidence 345677888888887665 44444456666666666678876643 2234444444444467899999999888
Q ss_pred HHHHHH
Q 011629 83 GLEVLN 88 (481)
Q Consensus 83 ~~~il~ 88 (481)
+..+..
T Consensus 92 ~~~lve 97 (165)
T 1vsq_C 92 VERLVE 97 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 305
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.88 E-value=2.6e+02 Score=22.58 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=38.0
Q ss_pred EEeCCcccchHHHHHHHHHhcCCEEEEEEecCCC-CChhHHH-HHHHHhccCC-ceEEEEEeCc
Q 011629 20 YVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQII-DTLLTVSSMM-SRILILHTYD 80 (481)
Q Consensus 20 ~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~~~~-~~l~~i~~s~-~~vIvl~~~~ 80 (481)
...|.-|....+.+.+.|++.|..|...-..+.. .+..++. .+.+.+.+.. .+-|++|++.
T Consensus 25 IgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 88 (169)
T 3ph3_A 25 IGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTG 88 (169)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred EEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 3356678889999999999999998765444332 1223443 3344555543 4556666654
No 306
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.75 E-value=2.3e+02 Score=21.79 Aligned_cols=84 Identities=6% Similarity=-0.032 Sum_probs=53.1
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH----HHHHHHHHH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI----WGLEVLNAA 90 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~----~~~~il~~a 90 (481)
+|.+-.-..+.-.-+..-+...++..|+.|.+..... + ...+++.+++.++++|.+++... .+..++.+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~---p---~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---P---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---C---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC---C---HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 3444444455555677888889999999998665421 2 33556677777899999987643 344556666
Q ss_pred HHcCCccCCeEEEEe
Q 011629 91 KHLRMMESGYVWIVT 105 (481)
Q Consensus 91 ~~~g~~~~~~~wI~~ 105 (481)
.+.+.. .-.+|+..
T Consensus 79 ~~~g~~-~i~v~vGG 92 (137)
T 1ccw_A 79 DEAGLE-GILLYVGG 92 (137)
T ss_dssp HHTTCT-TCEEEEEE
T ss_pred HhcCCC-CCEEEEEC
Confidence 666543 23455554
No 307
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=25.65 E-value=1e+02 Score=24.44 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCC--CCCCHHHHHHHHHcccccEEEeeeeecccccc--ceeec-cceeecceEEEE
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFGDGH--NSPKRFDLLRLVSEEVYDAAVGDFAITTERTK--MVDFT-QPYIESGLVVVA 422 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~--~~~fs-~p~~~~~~~~~~ 422 (481)
.+.++..|...|+.+ -.+...+.|. .-+.+..|+..+..|++|.++. ....|.. ..++- .-+-..++.+++
T Consensus 24 ~~~l~~~~~~~g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv---~~ldRL~R~~~~~l~~~l~~~gv~~~~ 99 (154)
T 3lhk_A 24 IQLIKSYAEENGWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVII---AYPDRLTRFGFETLKEFFKSYGTEIVI 99 (154)
T ss_dssp HHHHHHHHHHTTCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEE---SSHHHHCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEE---EeCCcccccHHHHHHHHHHHCCCEEEE
Confidence 567888899999886 4444444333 2235889999999999998754 3334422 12221 223335666665
Q ss_pred e
Q 011629 423 P 423 (481)
Q Consensus 423 ~ 423 (481)
-
T Consensus 100 ~ 100 (154)
T 3lhk_A 100 I 100 (154)
T ss_dssp S
T ss_pred E
Confidence 3
No 308
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.47 E-value=1.5e+02 Score=25.71 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=45.5
Q ss_pred HHcCCcEEEEEEEe--CCcccchHHHHHHHHHhcCCE-EEEEEecCCCCChhHHHHHHHHhccCCceEEEEEe
Q 011629 9 DYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCR-LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 78 (481)
Q Consensus 9 ~~fgW~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~-v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~ 78 (481)
+.=.=+.|+++..+ +.+.....+.+++.+++.|.. +... ....+.+.-...++.+...+.+-||+..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33344678998865 445667788899999999998 6542 2223333445667778778889988876
No 309
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=25.32 E-value=2.5e+02 Score=22.84 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=42.1
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.+++.|+..... ..+...+.+.+.+++++..+.+.+|||..+.-.
T Consensus 9 ~V~IimgS~-SD~~v~~~a~~~L~~~gi~~ev~-V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 73 (174)
T 3lp6_A 9 RVGVIMGSD-SDWPVMADAAAALAEFDIPAEVR-VVSAHRTPEAMFSYARGAAARGLEVIIAGAGGA 73 (174)
T ss_dssp SEEEEESCG-GGHHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESS
T ss_pred eEEEEECcH-HhHHHHHHHHHHHHHcCCCEEEE-EECCCCCHHHHHHHHHHHHhCCCCEEEEecCch
Confidence 467766322 22346777778888999886544 334444555677777777777788888775543
No 310
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=25.27 E-value=1.9e+02 Score=25.80 Aligned_cols=78 Identities=5% Similarity=-0.057 Sum_probs=48.1
Q ss_pred cEEEEEEEe-CCcccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH-HHHHHHHH
Q 011629 14 RNVIALYVD-DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW-GLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d-d~~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~-~~~il~~a 90 (481)
..||++..+ +.+.....+.+++.+.+. |+.+.... ...+.+.....++.+...+.+.||+...... ....+..+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 83 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRS---AGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEA 83 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 468888754 234445667788888888 98876542 1223333445667777777888888765433 24556666
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 84 ~~~~ 87 (325)
T 2x7x_A 84 YQKG 87 (325)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 5554
No 311
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=25.06 E-value=1.4e+02 Score=26.23 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHHHHHC---CCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeeeeecccc-ccceeeccceeecceEEEEec
Q 011629 349 DVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTER-TKMVDFTQPYIESGLVVVAPI 424 (481)
Q Consensus 349 dl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r-~~~~~fs~p~~~~~~~~~~~~ 424 (481)
-+++++++.+ +-.+++.+.. +.-.+-+.++.+|.+|++.++-.++++- ...+. .|+...++++++++
T Consensus 168 p~~~~~ae~f~~~~p~~~v~~~~-------~GSg~G~~~~~~g~~di~~ssr~l~~~e~~~~~~--~~va~d~iavvvn~ 238 (265)
T 4h1x_A 168 SLMEKLAEAYKKENPEVTIDITS-------NGSSAGITAVKEKTADIGMVSRELTPEEGKSLTH--DAIALDGIAVVVNN 238 (265)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEEE-------SCHHHHHHHHHHTSCSEEEESSCCCHHHHTTCEE--EEEEEEEEEEEECT
T ss_pred HHHHHHHHHHHhhCCCceeeEec-------CCcHHHHHHHHcCCCceeeccccCChHHHcCCeE--eeEEEEeEEEEECC
Confidence 4455555544 2234455554 2344567889999999998877776643 33343 58889999999987
Q ss_pred CC
Q 011629 425 KK 426 (481)
Q Consensus 425 ~~ 426 (481)
++
T Consensus 239 ~n 240 (265)
T 4h1x_A 239 DN 240 (265)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 312
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.00 E-value=1.2e+02 Score=26.54 Aligned_cols=77 Identities=6% Similarity=-0.131 Sum_probs=46.8
Q ss_pred cEEEEEEEe------CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHH
Q 011629 14 RNVIALYVD------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 87 (481)
Q Consensus 14 ~~V~ii~~d------d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il 87 (481)
..|+++..+ +.+.....+.+++.+++.|..+... ....+.+.-...++.+...+.+.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPF---PFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEEC---CCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEE---eCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 357777643 3566677888899999999887643 211121223456777777788888886543221 344
Q ss_pred HHHHHcC
Q 011629 88 NAAKHLR 94 (481)
Q Consensus 88 ~~a~~~g 94 (481)
..+.+.+
T Consensus 81 ~~l~~~~ 87 (287)
T 3bbl_A 81 QFLLKQK 87 (287)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 5555544
No 313
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=24.95 E-value=2.6e+02 Score=22.12 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=37.9
Q ss_pred EeCCcccchHHHHHHHHHhcCCEEEEEEecCCCC-ChhHHH-HHHHHhccCC-ceEEEEEeCc
Q 011629 21 VDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQII-DTLLTVSSMM-SRILILHTYD 80 (481)
Q Consensus 21 ~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-~~~~~~-~~l~~i~~s~-~~vIvl~~~~ 80 (481)
..|.-|....+.+.+.|++.|..|...-..+... +..++. ...+.+.+.. .+-|++|++.
T Consensus 6 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (149)
T 3he8_A 6 GSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTG 68 (149)
T ss_dssp EECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred EECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 3566788999999999999999987654443321 223443 3334555543 4566666654
No 314
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=24.42 E-value=2.8e+02 Score=22.36 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=37.0
Q ss_pred EEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCC-ChhHH-HHHHHHhccCC-ceEEEEEeCc
Q 011629 19 LYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQI-IDTLLTVSSMM-SRILILHTYD 80 (481)
Q Consensus 19 i~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-~~~~~-~~~l~~i~~s~-~~vIvl~~~~ 80 (481)
....|.-|....+.+.+.|++.|..|...-..+... +..++ ....+.+.+.. .+-|++|++.
T Consensus 25 aIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTG 89 (166)
T 3s5p_A 25 AFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTG 89 (166)
T ss_dssp EEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred EEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 334567788999999999999999987665443221 12234 23345555543 4556666654
No 315
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.39 E-value=2.5e+02 Score=24.33 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=42.8
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
..|+++..+ +.|.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+-||+...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 468888853 44566778888999999999876542 1223333445677777778888888654
No 316
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=24.09 E-value=3e+02 Score=22.56 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=41.0
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.|+||...+ .-....+...+.++..|+..... ..+...+.+.+.++.++..+.+.+|||....-.
T Consensus 23 ~V~IimGS~-SD~~v~~~a~~~L~~~Gi~~dv~-V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~a 87 (182)
T 1u11_A 23 VVGIIMGSQ-SDWETMRHADALLTELEIPHETL-IVSAHRTPDRLADYARTAAERGLNVIIAGAGGA 87 (182)
T ss_dssp SEEEEESSG-GGHHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred EEEEEECcH-HHHHHHHHHHHHHHHcCCCeEEE-EEcccCCHHHHHHHHHHHHhCCCcEEEEecCch
Confidence 477776332 22345777777888889886544 233444555666666777777788888775543
No 317
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=23.64 E-value=2e+02 Score=23.16 Aligned_cols=77 Identities=12% Similarity=-0.012 Sum_probs=49.7
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 82 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~ 82 (481)
.+....++++-+.+.++- |........+.+.+.+.-.|+.+... +.++....+++-+..+-++.+++-++.+
T Consensus 17 V~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~p~d 88 (164)
T 1nrz_A 17 VTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNVV-------SLEKAVAVYHNPQYQDETVFYLFTNPHD 88 (164)
T ss_dssp HHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESSHHH
T ss_pred heeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECCHHH
Confidence 345667788888887654 44444456666666666678876643 2234444444444467899999999888
Q ss_pred HHHHH
Q 011629 83 GLEVL 87 (481)
Q Consensus 83 ~~~il 87 (481)
+..+.
T Consensus 89 ~~~lv 93 (164)
T 1nrz_A 89 VLTMV 93 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 318
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.56 E-value=1.5e+02 Score=26.11 Aligned_cols=78 Identities=10% Similarity=-0.027 Sum_probs=47.9
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH-HHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW-GLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~-~~~il~~a 90 (481)
..|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+...... ....+..+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD---GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 467888754 34555667888889999999876542 1223333445666776667888887654322 23455555
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 80 ~~~~ 83 (306)
T 2vk2_A 80 KDAE 83 (306)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 5554
No 319
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=23.32 E-value=98 Score=17.33 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 011629 441 KMWCVTGIFFLVVGVVVWI 459 (481)
Q Consensus 441 ~~W~~~~~~~~~~~~~~~~ 459 (481)
.+|..+++.++++++.+.+
T Consensus 6 ~lg~Gvl~LLviV~LgV~L 24 (35)
T 2lk9_A 6 LLGIGILVLLIIVILGVPL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHhcchh
Confidence 4677777777666654443
No 320
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.27 E-value=2.3e+02 Score=25.43 Aligned_cols=78 Identities=8% Similarity=-0.036 Sum_probs=50.6
Q ss_pred CcEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHH
Q 011629 13 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 90 (481)
Q Consensus 13 W~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a 90 (481)
=+.|+++..+ +.+.....+.+++.+.+.|..+.... ...+.+.....++.+...+.+-||+....... ..+..+
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l 137 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN---SHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERIL 137 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHHH
Confidence 3578888854 45666788999999999999876432 22233344566777777888888887643221 344445
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 138 ~~~~ 141 (339)
T 3h5o_A 138 SQHA 141 (339)
T ss_dssp HHTT
T ss_pred hcCC
Confidence 5544
No 321
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.05 E-value=3.2e+02 Score=22.54 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=26.2
Q ss_pred EEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEE
Q 011629 15 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL 76 (481)
Q Consensus 15 ~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl 76 (481)
+|++|...+.. ...+.+.+.+ |+.+.... +. +.++....++++++.+.++||-
T Consensus 96 kIavvg~~~~~--~~~~~~~~ll---~~~i~~~~-~~---~~~e~~~~i~~l~~~G~~vvVG 148 (196)
T 2q5c_A 96 ELALIAYKHSI--VDKHEIEAML---GVKIKEFL-FS---SEDEITTLISKVKTENIKIVVS 148 (196)
T ss_dssp EEEEEEESSCS--SCHHHHHHHH---TCEEEEEE-EC---SGGGHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEeCcchh--hHHHHHHHHh---CCceEEEE-eC---CHHHHHHHHHHHHHCCCeEEEC
Confidence 66666654432 2234444444 44444321 21 2235566666777666666554
No 322
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=22.92 E-value=1.2e+02 Score=27.01 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=22.4
Q ss_pred hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHh
Q 011629 2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 39 (481)
Q Consensus 2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~ 39 (481)
++|.++|+.+|+. |.++..++.-.....+.|...+++
T Consensus 34 ~~~~~~L~~~Gf~-v~~l~~~~~t~~~i~~al~~l~~~ 70 (285)
T 3bij_A 34 EDMAAIAAERGFA-VTTLMTKAATRAKVIDAIGKAAKA 70 (285)
T ss_dssp HHHHHHHHHTTCE-EEEEEGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-eEEecCCccCHHHHHHHHHHHHHh
Confidence 5788888889988 555553333344445555554443
No 323
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.79 E-value=2.1e+02 Score=25.44 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=45.0
Q ss_pred hHHHHHHc--CCcEEEEEEEeCCc-ccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 4 IADIVDYF--GWRNVIALYVDDDH-GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 4 i~~ll~~f--gW~~V~ii~~dd~~-g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
-+++++.. +-++|+++|+..+- .....+.+++.+.+.|+.+...... +..+....++.+... ..++++..+
T Consensus 129 ~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~~l~~~-~d~i~~~~d 202 (302)
T 3lkv_A 129 HVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAEK-SDVIYALID 202 (302)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHHTT-CSEEEECSC
T ss_pred HHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHhccCC-eeEEEEeCC
Confidence 34566654 68999999966543 3345777888889999988654322 223566666666543 556555433
No 324
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=22.66 E-value=3.5e+02 Score=23.75 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=48.5
Q ss_pred CCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCC-ChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHH
Q 011629 12 GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 90 (481)
Q Consensus 12 gW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a 90 (481)
+=++|++|...+... ..+.+.+.+++.|.. .....+.... +.+.-....+++.+.++++| ++++...+..+++++
T Consensus 125 ~~~~Ig~i~g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI-~~~~D~~a~Gv~~a~ 200 (296)
T 2hqb_A 125 ETHKVGVIAAFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVF-YPAGDGYHVPVVEAI 200 (296)
T ss_dssp SSSEEEEEESCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEE-ECCCTTTHHHHHHHH
T ss_pred cCCeEEEEcCcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEE-EECCCCCCHHHHHHH
Confidence 458999998654322 788889999998875 3322232221 22233444555555566654 445556677888888
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.|
T Consensus 201 ~e~G 204 (296)
T 2hqb_A 201 KDQG 204 (296)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8876
No 325
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=22.46 E-value=2.5e+02 Score=22.02 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=6.2
Q ss_pred HHHHHHHHHhcCCE
Q 011629 30 IAALGDKLAEKRCR 43 (481)
Q Consensus 30 ~~~l~~~l~~~gi~ 43 (481)
.+.+.+.|.+.|+.
T Consensus 43 ~~~l~~~L~~~~~~ 56 (165)
T 1fuk_A 43 VEELTTKLRNDKFT 56 (165)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 34444444444443
No 326
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.43 E-value=1.1e+02 Score=26.67 Aligned_cols=78 Identities=10% Similarity=0.073 Sum_probs=43.4
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
..|+++..+ +.|.....+.+++.+++.|+.+... +....+.+.....++.+...+.+.||+....... ..+..+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 85 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGSADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQLLQ 85 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C----------CHHHHHHSSCCSEEEEESCC-----CHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHHHHH
Confidence 468888753 4566677888899999999887643 0111111223345667777778888887654322 3344444
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 86 ~~~ 88 (290)
T 3clk_A 86 SSD 88 (290)
T ss_dssp CC-
T ss_pred hCC
Confidence 433
No 327
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=22.38 E-value=1.9e+02 Score=23.26 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=49.0
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 82 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~ 82 (481)
.+....++++-+.+.++- |........+.+.+.+.-.|+.+.+. +.++....+++-+..+-++.+++-++.+
T Consensus 18 V~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~p~d 89 (163)
T 1ble_A 18 ILTRWIKVHAADRIIVVS-DDIAQDEMRKTLILSVAPSNVKASAV-------SVSKMAKAFHSPRYEGVTAMLLFENPSD 89 (163)
T ss_dssp HHHHHHHHHTCSEEEEEC-HHHHHCHHHHHHHHTSSCTTSEEEEE-------CHHHHHHHHHCSTTTTCEEEEEESSSHH
T ss_pred heeeeccccCCCEEEEeC-ccccCCHHHHHHHHhhCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECCHHH
Confidence 345667788888887654 44433445555555555568776543 2234445555544567899999999988
Q ss_pred HHHHH
Q 011629 83 GLEVL 87 (481)
Q Consensus 83 ~~~il 87 (481)
+..+.
T Consensus 90 ~~~lv 94 (163)
T 1ble_A 90 IVSLI 94 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 328
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=22.31 E-value=1.5e+02 Score=26.17 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred HHHHHHH---HH-CCCcccEEEEeCCCCCCCCCHHHHHHHHHc-c-cccEEEeeeeecccc---ccceeeccceeecceE
Q 011629 349 DVFTAVL---EL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-E-VYDAAVGDFAITTER---TKMVDFTQPYIESGLV 419 (481)
Q Consensus 349 dl~~~ia---~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g-~~d~~~~~~~~t~~r---~~~~~fs~p~~~~~~~ 419 (481)
++++.+. ++ .|.++++.... ++-..++..+.. | .+|+.+++-....++ ....+...||....++
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~v 93 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEIV 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccEE
Confidence 5777877 76 79775541032 345678888877 5 599987642111111 1223456789999999
Q ss_pred EEEecCC
Q 011629 420 VVAPIKK 426 (481)
Q Consensus 420 ~~~~~~~ 426 (481)
|+++++.
T Consensus 94 i~~~~~~ 100 (296)
T 3cg1_A 94 IAFTDKS 100 (296)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 9998764
No 329
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=22.27 E-value=72 Score=30.46 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=50.0
Q ss_pred CCceEEEeecCCCCCcCcEEecCCCCeEEeeeHHHHHHHHHHCCC-cccEEEEeCCCCCCCCCHHHHHHHHHccc----c
Q 011629 316 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY-AVPYKLVPFGDGHNSPKRFDLLRLVSEEV----Y 390 (481)
Q Consensus 316 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~ia~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----~ 390 (481)
+..+|+++......+.|+....+ +-+.++.|+ + ++++.. .+|..++.+|..|+ +
T Consensus 34 e~~~lriG~~~~~~~apl~vA~~-------------~G~f~~~Gl~~--Vel~~~------~s~~~~~~al~~G~~~~~~ 92 (429)
T 2i49_A 34 ETANIKLGYIPIVEAAPLIIAQE-------------KGFFAKYGMTG--VEVSKQ------ANWASARDNVTIGSQGGGI 92 (429)
T ss_dssp SCSEEEEEECSSGGGHHHHHHHH-------------TTHHHHTTCCE--EEEEEC------SSHHHHHHHHHHTGGGTSC
T ss_pred CCceEEEEeccchhhHHHHHHHH-------------CChHHHcCCCe--eEEEEc------CCHHHHHHHHHcCCCCCce
Confidence 34578888864222334322211 113445686 5 555552 57999999999999 9
Q ss_pred cEEEe--eeeeccc-----cccceeeccc--eeecceEEEEecC
Q 011629 391 DAAVG--DFAITTE-----RTKMVDFTQP--YIESGLVVVAPIK 425 (481)
Q Consensus 391 d~~~~--~~~~t~~-----r~~~~~fs~p--~~~~~~~~~~~~~ 425 (481)
|++.. ++.+... |.+..++... ....+..++++++
T Consensus 93 D~a~~~~~~~~~~~~g~~~~~~g~~~~~v~~~~~~g~~i~v~~~ 136 (429)
T 2i49_A 93 DGGQWQMPMPHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPM 136 (429)
T ss_dssp SEEEECTTHHHHHHTTTTTTTCCCCEEEEEECCBCCEEEEECGG
T ss_pred eEEEeccHHHHHHHcCccccCCCCCEEEEEEeccCCcEEEEecc
Confidence 99975 2222211 2233333222 2345677888765
No 330
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=22.14 E-value=4.2e+02 Score=27.01 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=55.3
Q ss_pred hHhHHHH---HHcCCc----EEEEEEEeCCccc---c------------------------------hHHHHHHHHHhcC
Q 011629 2 AAIADIV---DYFGWR----NVIALYVDDDHGR---N------------------------------GIAALGDKLAEKR 41 (481)
Q Consensus 2 ~Ai~~ll---~~fgW~----~V~ii~~dd~~g~---~------------------------------~~~~l~~~l~~~g 41 (481)
+||.+.+ ...||+ ++.|+.+|..+-. + .+..|.+.|.+++
T Consensus 224 dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~ 303 (690)
T 3fcs_B 224 DAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN 303 (690)
T ss_dssp HHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC
Confidence 4677776 678997 6888887765421 0 1677888889999
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHHH
Q 011629 42 CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 92 (481)
Q Consensus 42 i~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~~ 92 (481)
|.+.|...-. ....+..+.+.|. ++.|-++-.+...+..++..|++
T Consensus 304 i~~ifavt~~---~~~~y~~l~~~i~--~s~v~~l~~dSsni~~li~~~y~ 349 (690)
T 3fcs_B 304 INLIFAVTEN---VVNLYQNYSELIP--GTTVGVLSMDSSNVLQLIVDAYG 349 (690)
T ss_dssp CEEEEEEEGG---GHHHHHHHHHHST--TCEEEEECTTCTTHHHHHHHHHH
T ss_pred CeEEEEEeCC---chhhHHHHHhhcC--CceeeeeccccHHHHHHHHHHHH
Confidence 9877664321 1122444444443 34566666777778888888876
No 331
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.01 E-value=3e+02 Score=24.94 Aligned_cols=74 Identities=11% Similarity=-0.072 Sum_probs=46.6
Q ss_pred cEEEEEEEeCCccc-chHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHHH
Q 011629 14 RNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 92 (481)
Q Consensus 14 ~~V~ii~~dd~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~~ 92 (481)
+++.+|+. ...|. ...+.+.+.+++.|+.+.....- ... +.....++....+.+.||+++-...+..++..+.+
T Consensus 30 ~~~~vi~N-p~sg~~~~~~~i~~~l~~~g~~~~~~~t~--~~~--~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 30 PASLLILN-GKSTDNLPLREAIMLLREEGMTIHVRVTW--EKG--DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp CCEEEEEC-SSSTTCHHHHHHHHHHHTTTCCEEEEECC--STT--HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCCchHHHHHHHHHHcCCcEEEEEec--Ccc--hHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhh
Confidence 56888883 33332 45677888889999876654321 112 33344444444457788888888888888877764
No 332
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=21.97 E-value=1.8e+02 Score=23.98 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=48.6
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHH
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 82 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~ 82 (481)
.+....++++-+.+.++- |+.......+.+.+.+.-.|+.+... +.++....+++-+..+-++.+++-++.+
T Consensus 38 Vat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~il~k~p~d 109 (187)
T 3lfj_A 38 VMTRWMKGFPEASIVIID-DELAVDEFMKNIYTMAAPPGVKVKVF-------GVDAALKEWSQKTSVEEKVFLLFKNIDT 109 (187)
T ss_dssp HHHHHHTTCTTCEEEEEC-HHHHHCHHHHHHHHHTSCTTCCEEEE-------CHHHHHHHHHSBCSSCEEEEEEESSHHH
T ss_pred hhheeccccCCCEEEEEC-ccccCCHHHHHHHHHhccCCCeEEEE-------EHHHHHHHHhCCccCCceEEEEECCHHH
Confidence 345667778888877554 44444455666666666668776532 2234444444444456889999988888
Q ss_pred HHHHHH
Q 011629 83 GLEVLN 88 (481)
Q Consensus 83 ~~~il~ 88 (481)
+..++.
T Consensus 110 ~~~lve 115 (187)
T 3lfj_A 110 CKRVMD 115 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877754
No 333
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=21.97 E-value=3e+02 Score=21.76 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=37.1
Q ss_pred eCCcccchHHHHHHHHHhcCCEEEEEEecCCC-CChhHHH-HHHHHhccCC-ceEEEEEeCc
Q 011629 22 DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQII-DTLLTVSSMM-SRILILHTYD 80 (481)
Q Consensus 22 dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~~~~-~~l~~i~~s~-~~vIvl~~~~ 80 (481)
.|.-|....+.+.+.|++.|..|...-..+.. .+..++. ...+.+.+.. .+.|++|++.
T Consensus 8 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 69 (149)
T 2vvr_A 8 CDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTG 69 (149)
T ss_dssp ECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCc
Confidence 46678889999999999999988765443322 1223443 3334454433 4666666664
No 334
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=21.95 E-value=1.3e+02 Score=23.04 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCEEEE--EEe-cCCC-CChhHHHHHHHHhccCCceEEEEEe
Q 011629 29 GIAALGDKLAEKRCRLSH--KVP-LSPK-GSRNQIIDTLLTVSSMMSRILILHT 78 (481)
Q Consensus 29 ~~~~l~~~l~~~gi~v~~--~~~-~~~~-~~~~~~~~~l~~i~~s~~~vIvl~~ 78 (481)
-.+.+++.+.++|+.+.. ... ++-. .....+..+++.+++...++||+.-
T Consensus 26 Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ 79 (138)
T 3bvp_A 26 QIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYK 79 (138)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 456677777888987642 222 2221 2345788888888887677776653
No 335
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=21.94 E-value=2.1e+02 Score=23.18 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=50.1
Q ss_pred HhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhc-CCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629 3 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI 81 (481)
Q Consensus 3 Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~ 81 (481)
.+....++++-+.+.++- |........+.+.+.+.-. |+.+... +.++....+++-+ .+-++.+++-++.
T Consensus 22 Vat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~~gvk~~i~-------sve~ai~~~~~~~-~~~~v~il~k~p~ 92 (168)
T 3eye_A 22 VGVTWTSTIGANLLVVVD-DVVANDDIQQKLMGITAETYGFGIRFF-------TIEKTINVIGKAA-PHQKIFLICRTPQ 92 (168)
T ss_dssp HHHHHHHHHTCSEEEEEC-HHHHHSGGGGHHHHHHHHHHTCEEEEE-------CHHHHHHHGGGCC-TTCCEEEEESSHH
T ss_pred hhheeccccCCCEEEEEc-ccccCCHHHHHHHHhcCCCCCCeEEEE-------EHHHHHHHHhccc-CCceEEEEECCHH
Confidence 445677888888887665 4444445667777777777 8887643 2223434444433 5688999998988
Q ss_pred HHHHHHH
Q 011629 82 WGLEVLN 88 (481)
Q Consensus 82 ~~~~il~ 88 (481)
++..++.
T Consensus 93 d~~~lve 99 (168)
T 3eye_A 93 TVRKLVE 99 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 336
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.70 E-value=25 Score=33.06 Aligned_cols=72 Identities=10% Similarity=0.013 Sum_probs=43.8
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 80 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~ 80 (481)
+.++++.+| +++.||++...+.....+.+.+.+++.|+. +. .+....+.+.+....+.+++ ++++||..+..
T Consensus 33 l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~--~~-~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGG 104 (376)
T 1kq3_A 33 LEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVN--KQ-IFGGECSDEEIERLSGLVEE-ETDVVVGIGGG 104 (376)
T ss_dssp HHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEE--EE-ECCSSCBHHHHHHHHTTCCT-TCCEEEEEESH
T ss_pred HHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCe--EE-EeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCc
Confidence 456778889 999999854322111245555566666633 22 33333444566676777777 88999987653
No 337
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.62 E-value=3e+02 Score=24.82 Aligned_cols=64 Identities=6% Similarity=-0.074 Sum_probs=41.5
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
..|+++..+ +.+.....+.+++.+.+.|+.+.... ....+.+.....++.+...+.+-||+...
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 62 LLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSM--VERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE--CCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEe--CCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 478888854 34555677888889999999876542 11112223345677777777888887643
No 338
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=21.45 E-value=1.5e+02 Score=25.03 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHcccccEEEeee
Q 011629 349 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 397 (481)
Q Consensus 349 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 397 (481)
+.++.+.+..|+++++... .+...++.+|.+|++|.++.+.
T Consensus 161 ~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~vDa~~~~~ 201 (259)
T 2v25_A 161 KAIGEAAKKIGIDVKFSEF--------PDYPSIKAALDAKRVDAFSVDK 201 (259)
T ss_dssp HHHHHHHHHTTCCCEEEEE--------SSHHHHHHHHHTTSSSEEEEEH
T ss_pred HHHHHHHHhcCCceeEEEe--------CCHHHHHHHHHcCCCcEEEecH
Confidence 4566677777876444433 4688999999999999987654
No 339
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=21.41 E-value=1.1e+02 Score=23.53 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCcccEEEEeCC-CCC--CCCCHHHHHHHHHcccccEEEeeeeecccccc--cee----eccceeecce
Q 011629 348 IDVFTAVLELLPYAVPYKLVPFG-DGH--NSPKRFDLLRLVSEEVYDAAVGDFAITTERTK--MVD----FTQPYIESGL 418 (481)
Q Consensus 348 ~dl~~~ia~~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~~--~~~----fs~p~~~~~~ 418 (481)
.+.+++.|+..|+.+.-.+...+ .|. .-+.+..|+..+..|++|.++. ....|.. ..+ +-.-+...|+
T Consensus 27 ~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv---~~ldRl~R~~~~~~~~~~~~l~~~gv 103 (138)
T 3bvp_A 27 IDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLV---YKLDRLSRSVRDTLYLVKDVFTKNKI 103 (138)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEE---SSHHHHCSCHHHHHHHHHHTTGGGTC
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEE---EeCCcccccHHHHHHHHHHHHHHCCC
Confidence 46788888888977543444433 222 2246888999999999998754 3334421 222 2233455677
Q ss_pred EEEEec
Q 011629 419 VVVAPI 424 (481)
Q Consensus 419 ~~~~~~ 424 (481)
.+++..
T Consensus 104 ~l~~~~ 109 (138)
T 3bvp_A 104 DFISLN 109 (138)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 777654
No 340
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=21.23 E-value=85 Score=29.03 Aligned_cols=79 Identities=13% Similarity=-0.027 Sum_probs=42.6
Q ss_pred HHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecC---CCCChhHHHHHHHHhccCCc---eEEEEEeC
Q 011629 6 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLS---PKGSRNQIIDTLLTVSSMMS---RILILHTY 79 (481)
Q Consensus 6 ~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~---~~~~~~~~~~~l~~i~~s~~---~vIvl~~~ 79 (481)
++++.+ +++.+|++..... ...+.+.+.+ +.| .+... .++ .+.+.+.....++.+++.++ ++||..+.
T Consensus 26 ~~l~~~--~~~liVtd~~~~~-~~~~~v~~~L-~~g-~~~~~-~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG 99 (354)
T 1xah_A 26 TYLNQF--DQSFLLIDEYVNQ-YFANKFDDIL-SYE-NVHKV-IIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG 99 (354)
T ss_dssp HHHTTC--SCEEEEEEHHHHH-HHHHHHC--------CEEEE-EECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES
T ss_pred HHHHhc--CeEEEEECCcHHH-HHHHHHHHHH-hcC-CeEEE-EECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC
Confidence 455555 8888888554332 2566677777 667 44322 233 22355567777888887776 78887765
Q ss_pred c--HHHHHHHHHH
Q 011629 80 D--IWGLEVLNAA 90 (481)
Q Consensus 80 ~--~~~~~il~~a 90 (481)
. -++..++...
T Consensus 100 Gsv~D~ak~vA~~ 112 (354)
T 1xah_A 100 GATGDFAGFVAAT 112 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3 3444554433
No 341
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.17 E-value=2.4e+02 Score=24.50 Aligned_cols=80 Identities=5% Similarity=-0.063 Sum_probs=48.3
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~~a 90 (481)
+.|+++..+ +.|.....+.+++.+++.|+.+..... ....+.+.-...++.+...+.+-||+..... .....+.++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 357888753 445566788888899999988765421 1122323334556777777788888765432 223445566
Q ss_pred HHcC
Q 011629 91 KHLR 94 (481)
Q Consensus 91 ~~~g 94 (481)
.+.+
T Consensus 81 ~~~~ 84 (288)
T 1gud_A 81 WKKG 84 (288)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 5554
No 342
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.12 E-value=1.5e+02 Score=26.96 Aligned_cols=76 Identities=5% Similarity=-0.060 Sum_probs=47.3
Q ss_pred EEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHHH
Q 011629 15 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 92 (481)
Q Consensus 15 ~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~~ 92 (481)
.|+++..+ +.|.....+.+++.+.+.|..+.... ...+.+.....++.+...+.+-||+...... ...+..+.+
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~ 143 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITN---SNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQK 143 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEE---CTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHh
Confidence 58888854 44556778888899999998876532 1223333445677777777888887654332 234455555
Q ss_pred cC
Q 011629 93 LR 94 (481)
Q Consensus 93 ~g 94 (481)
.+
T Consensus 144 ~~ 145 (348)
T 3bil_A 144 QG 145 (348)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 343
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=21.01 E-value=88 Score=27.14 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=34.4
Q ss_pred cEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHH
Q 011629 14 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 90 (481)
Q Consensus 14 ~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a 90 (481)
++|.++..+. ....|.+.|++.|+.|.....+.......+.....+.+.....++ |++.++..+..++..+
T Consensus 134 ~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~ 204 (254)
T 4es6_A 134 PKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNG-LVVSSGQGLQNLYQLA 204 (254)
T ss_dssp CEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCE-EECCSHHHHHHHHHHH
T ss_pred CEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCE-EEEcCHHHHHHHHHHh
Confidence 4555554332 345677777788877655444432211101112223333334444 3456666666666554
No 344
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=20.99 E-value=1.5e+02 Score=26.64 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=49.2
Q ss_pred eHHHHHHHHHHCCCcccEEEEeCCCCCCCCCHHHHHHHHHccc---ccEEEeeeeecc-----ccccce-----------
Q 011629 347 CIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV---YDAAVGDFAITT-----ERTKMV----------- 407 (481)
Q Consensus 347 ~~dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~d~~~~~~~~t~-----~r~~~~----------- 407 (481)
.-++++++.++.|.++++ .. ..+..+...+..+. .|++..+-.... .....+
T Consensus 50 ~~~~~~~f~~~~gi~V~~--~~-------~~~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~ 120 (351)
T 4edp_A 50 KETVFEPFAKEHGVEIVL--DI-------GNNSERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYSKIPNASEM 120 (351)
T ss_dssp HHHTHHHHHHHHTCCEEE--EE-------CCHHHHHHHHHHCTTCCCCEEEEEHHHHHHHHHHTCBCCCCGGGCGGGGGB
T ss_pred HHHHHHHHHHHHCCEEEE--Ee-------CCcHHHHHHHHhcCCCCCCEEEECcHHHHHHHHCCCcccCCchhCCChHHh
Confidence 347788888888877554 44 45888888888766 898864322100 000001
Q ss_pred ----------eeccceeecceEEEEecCC-CCcCccccc
Q 011629 408 ----------DFTQPYIESGLVVVAPIKK-LNSNAWAFL 435 (481)
Q Consensus 408 ----------~fs~p~~~~~~~~~~~~~~-~~~~~~~~l 435 (481)
.|..|+......++++++. ..+..+.+|
T Consensus 121 ~~~~~~~~g~~y~~P~~~~~~~l~ynkd~~~~p~tw~el 159 (351)
T 4edp_A 121 NEKAKSTVEAGYGPAYTLNSIGIVVDPSAGIEINSWEDL 159 (351)
T ss_dssp CTTTHHHHHHTSSCEEEEEEEEEEECGGGCCCCCSGGGG
T ss_pred hHHhhccCCCeeEEEEEeeEEEEEEcCCCCCCCCCHHHH
Confidence 1456888889999998872 234455544
No 345
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.95 E-value=1.4e+02 Score=25.92 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=42.2
Q ss_pred cEEEEEEEe-CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d-d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
..|+++..+ +.+.....+.+++.+++.|+.+.... ...+.+.....++.+...+.+.||+...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SEENEDKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CTTCHHHHHHHHHHHHHTTEEEEEECCS
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHcCccEEEEecC
Confidence 368888764 44556678888889999999876532 1223333445677777777888888654
No 346
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.89 E-value=3.3e+02 Score=23.54 Aligned_cols=75 Identities=9% Similarity=-0.027 Sum_probs=47.6
Q ss_pred CCcEEEEEEEeC--CcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHH
Q 011629 12 GWRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 89 (481)
Q Consensus 12 gW~~V~ii~~dd--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~ 89 (481)
.=+.||++. +. .|.....+.+++.+++.|+.+.....-. +.+ -...++.+...+.+-||+....... ..+..
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~ 84 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SRA-EKVAVQALMRERCEAAILLGTRFDT-DELGA 84 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TBC-HHHHHHHHTTTTEEEEEEETCCCCH-HHHHH
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CHH-HHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 345788888 53 3455678888999999999877654321 112 3466777877889999888654332 44444
Q ss_pred HHH
Q 011629 90 AKH 92 (481)
Q Consensus 90 a~~ 92 (481)
+.+
T Consensus 85 ~~~ 87 (289)
T 3k9c_A 85 LAD 87 (289)
T ss_dssp HHT
T ss_pred HHc
Confidence 433
No 347
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=20.83 E-value=3.7e+02 Score=22.93 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=39.4
Q ss_pred hHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEec---CCCCCh-hHHHHHHHHhccCCceEEEEE
Q 011629 4 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPL---SPKGSR-NQIIDTLLTVSSMMSRILILH 77 (481)
Q Consensus 4 i~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~---~~~~~~-~~~~~~l~~i~~s~~~vIvl~ 77 (481)
.++.++..|.+.|-+......... ..+.+++.+++.|+.+...... ...... +.+...++..+.-+++.|++.
T Consensus 28 ~l~~a~~~G~~~vEl~~~~~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~ 104 (264)
T 1yx1_A 28 FLPLLAMAGAQRVELREELFAGPP-DTEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVS 104 (264)
T ss_dssp GHHHHHHHTCSEEEEEGGGCSSCC-CHHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHcCCCEEEEEHHhcCCCH-HHHHHHHHHHHcCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 456677778888777532110011 5777888888888876543221 111111 345555555555556555554
No 348
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.80 E-value=1.5e+02 Score=26.56 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=47.9
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcHHHHHHHHHHH
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 91 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~~~~~il~~a~ 91 (481)
..|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.....++.+...+.+-||+....... ..+..+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 478988853 56667788889999999999876532 12222233456777777778888876543221 3444443
Q ss_pred HcC
Q 011629 92 HLR 94 (481)
Q Consensus 92 ~~g 94 (481)
+.+
T Consensus 137 ~~~ 139 (332)
T 2hsg_A 137 KSP 139 (332)
T ss_dssp TSS
T ss_pred hCC
Confidence 333
No 349
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.78 E-value=86 Score=27.43 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=47.8
Q ss_pred cEEEEEEEe----CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH-HHHHHHH
Q 011629 14 RNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLN 88 (481)
Q Consensus 14 ~~V~ii~~d----d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~-~~~~il~ 88 (481)
+.|+++..+ +.+.....+.+++.+++.|+.+..... ....+.+.....++.+...+.+.||+..... .....+.
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAP-EKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecC-CCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 367888753 456667788889999999988764311 1022323344566777777788888865433 2224454
Q ss_pred HHHHcC
Q 011629 89 AAKHLR 94 (481)
Q Consensus 89 ~a~~~g 94 (481)
.+.+.+
T Consensus 85 ~~~~~~ 90 (289)
T 3brs_A 85 EIKDAG 90 (289)
T ss_dssp TTGGGT
T ss_pred HHHHCC
Confidence 444433
No 350
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=20.58 E-value=2.7e+02 Score=24.18 Aligned_cols=76 Identities=13% Similarity=-0.036 Sum_probs=50.7
Q ss_pred CcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCc---HHHHHHHHH
Q 011629 13 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD---IWGLEVLNA 89 (481)
Q Consensus 13 W~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~---~~~~~il~~ 89 (481)
=.-+.+++ |..|..+..+.|...-+..++.|-....+ . + .+ ++.+.+..++++|.+.+.. ..+..++..
T Consensus 74 A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi--~-~--~~--qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~ 145 (251)
T 1i4n_A 74 ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY--I-D--TV--QVKLASSVGADAILIIARILTAEQIKEIYEA 145 (251)
T ss_dssp CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC--C-S--TH--HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHH
T ss_pred CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC--C-C--HH--HHHHHHHcCCCEEEEecccCCHHHHHHHHHH
Confidence 34455555 56676677777776666667766644322 1 1 23 3445888999999998765 567888889
Q ss_pred HHHcCCc
Q 011629 90 AKHLRMM 96 (481)
Q Consensus 90 a~~~g~~ 96 (481)
|.++||.
T Consensus 146 a~~lGl~ 152 (251)
T 1i4n_A 146 AEELGMD 152 (251)
T ss_dssp HHTTTCE
T ss_pred HHHcCCe
Confidence 9988874
No 351
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=20.24 E-value=1.9e+02 Score=24.47 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=42.3
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
+.||++..+ +.|.....+.+++.+++.|..+.... ...+.+.....++.+...+.+-||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME---SQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEe---CCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 367888754 34555678888899999998876542 1223333456677777778888888764
No 352
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=20.09 E-value=2.2e+02 Score=25.44 Aligned_cols=63 Identities=8% Similarity=-0.097 Sum_probs=42.7
Q ss_pred cEEEEEEEe--CCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeC
Q 011629 14 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 79 (481)
Q Consensus 14 ~~V~ii~~d--d~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~ 79 (481)
..|+++..+ +.+.....+.+++.+++.|..+.... ...+.+.....++.+...+.+-||+...
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 468888854 34566778888899999999876542 1223333445677777777888888664
Done!