Query 011630
Match_columns 481
No_of_seqs 75 out of 77
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 69.8 3.3 0.00011 30.8 2.9 29 242-270 12-40 (44)
2 2l2t_A Receptor tyrosine-prote 68.5 4.4 0.00015 30.2 3.4 30 242-271 11-40 (44)
3 2jwa_A Receptor tyrosine-prote 45.0 13 0.00045 27.7 2.5 25 245-270 16-40 (44)
4 1wn9_A The hypothetical protei 28.6 59 0.002 29.2 4.4 62 351-426 30-100 (131)
5 3uaf_A TTR-52; beta barrel/san 22.5 43 0.0015 29.0 2.3 16 289-304 3-18 (117)
6 2k50_A Replication factor A re 21.3 2.8E+02 0.0095 22.5 7.0 23 277-299 5-27 (115)
7 3udc_A Small-conductance mecha 21.2 56 0.0019 31.2 3.1 48 242-295 92-139 (285)
8 2vv5_A MSCS, small-conductance 20.5 98 0.0033 29.6 4.6 45 244-294 95-139 (286)
9 3bho_A Cleavage and polyadenyl 20.1 9.8 0.00033 36.4 -2.4 36 410-445 43-82 (208)
10 2knc_B Integrin beta-3; transm 16.8 71 0.0024 26.0 2.3 21 257-277 28-51 (79)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=69.82 E-value=3.3 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 011630 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAI 270 (481)
Q Consensus 242 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l 270 (481)
+|..-|+++++++++.+++|-+||++|..
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 45666777777766667777777776554
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.51 E-value=4.4 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 011630 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAIT 271 (481)
Q Consensus 242 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~ 271 (481)
+|..-|+++++++++.++.|-+||++|...
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345556666666666667776777765543
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=44.97 E-value=13 Score=27.71 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc
Q 011630 245 LIVVLVLFAVIAAIFIWNTCWGRKAI 270 (481)
Q Consensus 245 l~~~~~lfa~vaa~~iWn~~~~~r~l 270 (481)
..|++ ++.+++.+++|-+|++||-.
T Consensus 16 ~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 16 SAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHH-HHHHHHHHHHHHhheehhhh
Confidence 33444 55666667777777665543
No 4
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=28.57 E-value=59 Score=29.18 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=40.0
Q ss_pred eeEEEEeCCCc-----eeEEEecCCCceeeeeeecceEEc-CCCCCC---CCCHHHHHhhhhcCCCCCCceeEEEeeeec
Q 011630 351 VDFYISDFQSG-----LRALVKTGSGARVTPFVDDSVVID-IKPENK---DLSPEFIRWLGQKSLSSDDRLMRLKEGYIK 421 (481)
Q Consensus 351 ~dFyIsD~~sG-----~RALVkaG~GarVtP~Iees~VvD-~~~~~k---d~S~el~~wL~~rnLSsd~r~mRykEgiI~ 421 (481)
.-.+|+|.|+. ..++|..|...=+ ..| +.|... .+=.||..||.+++ ..+.+|-+|.
T Consensus 30 ~v~liTDwQd~R~~ARYa~ll~~gk~~ll--------t~dAFGPafg~G~~ALaELv~wl~~~G------~~~f~EaVl~ 95 (131)
T 1wn9_A 30 KVYLITDWQDKRDQARYALLLHTGKKDLL--------VPDAFGPAFPGGEEALSELVGLLLAQG------ARRFYEAVVS 95 (131)
T ss_dssp EEEEEEECCSSGGGCCEEEEEECSSCEEE--------EEEEESTTSTTHHHHHHHHHHHHHHTT------CCEEEEEEEC
T ss_pred eEEEEecccccchhhhhhheeecCCcccc--------cccccCCCcccHHHHHHHHHHHHHHcC------CchhhhhccC
Confidence 34578888764 3445554433222 233 555553 44468899999999 5579999999
Q ss_pred CCCEE
Q 011630 422 EGSTV 426 (481)
Q Consensus 422 eGs~V 426 (481)
+++-.
T Consensus 96 p~e~~ 100 (131)
T 1wn9_A 96 PGEMT 100 (131)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 88643
No 5
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=22.48 E-value=43 Score=29.01 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=14.1
Q ss_pred CEEEEEEEEEeCCccc
Q 011630 289 QFVKVTGVVTCGNVPL 304 (481)
Q Consensus 289 q~VKItGvVtCG~~PL 304 (481)
|-|-|+|++.|++.|-
T Consensus 3 qsV~V~G~L~C~~~Pa 18 (117)
T 3uaf_A 3 SCLMATGVLKCPTDPE 18 (117)
T ss_dssp EEEEEEEEEECTTCGG
T ss_pred EEEEEEEEEEeCCccC
Confidence 6799999999999983
No 6
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.29 E-value=2.8e+02 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.0
Q ss_pred CCCCccccCCCCCEEEEEEEEEe
Q 011630 277 HPDTDLRTAKSGQFVKVTGVVTC 299 (481)
Q Consensus 277 ~Pds~Lrs~~dGq~VKItGvVtC 299 (481)
++-..|.++++|+.|.|.|.|.-
T Consensus 5 ~~~~~I~~L~~g~~v~i~~~V~~ 27 (115)
T 2k50_A 5 HRMDTISKLEEGAETPVTGRVMK 27 (115)
T ss_dssp TCCCCTTTCCTTCEEEEEEEEEE
T ss_pred cceEEHHHCCCCCEeEEEEEEEE
Confidence 45567888999999999998875
No 7
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=21.23 E-value=56 Score=31.24 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCccccCCCCCEEEEEE
Q 011630 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVTG 295 (481)
Q Consensus 242 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~Lrs~~dGq~VKItG 295 (481)
.--|++.+++.++++++-..+.. ..|+...=-.--+.++.||+|+|.|
T Consensus 92 ~~~l~a~~g~~g~aig~a~q~~l------~n~~~Gi~i~~~~pf~vGD~I~i~~ 139 (285)
T 3udc_A 92 MTSLLAVAGIGSLAIGFGAQNLV------KDMISGFFIIFEDQFSVGDYVTING 139 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH------HHHHHHHHHHHTTSCCTTCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhCCccCCCEEEECC
Confidence 33455566666666655444332 1111111111123688999999854
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=20.49 E-value=98 Score=29.64 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCccccCCCCCEEEEE
Q 011630 244 LLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVT 294 (481)
Q Consensus 244 ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~Lrs~~dGq~VKIt 294 (481)
-|++.+++.++++++-..+.. ..|+...=-.--+-++.||+|+|.
T Consensus 95 ~l~a~~g~~g~aig~a~q~~l------~n~~sGi~i~~~~pf~vGD~I~i~ 139 (286)
T 2vv5_A 95 SVIAVLGAAGLVVGLALQGSL------SNLAAGVLLVMFRPFRAGEYVDLG 139 (286)
T ss_dssp THHHHHHHHHHHHHHHHTHHH------HHHHHHHHHHTTCSSCTTCEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHhcCCccCCCEEEEC
Confidence 345555566666655555333 111111111112357889999864
No 9
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=20.05 E-value=9.8 Score=36.38 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=28.2
Q ss_pred CceeEEEeeeecCCCEEEEEEEEEe-cCc---eeeEeCCC
Q 011630 410 DRLMRLKEGYIKEGSTVSVMGIVQR-NDN---VLMIVPPP 445 (481)
Q Consensus 410 ~r~mRykEgiI~eGs~VsViGvv~r-~~~---vlmI~pP~ 445 (481)
+|..|++|.|-+.|.|++|.|++-. +++ +|+++.+.
T Consensus 43 ~r~~rl~~~y~~~g~R~sV~avil~~~~~~phVLLlq~~~ 82 (208)
T 3bho_A 43 ARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGT 82 (208)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred HHHHHHHHHHHhhCCceEEEEEEEEcCCCCcEEEEEEcCC
Confidence 4667899999999999999999853 333 77777543
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.82 E-value=71 Score=25.95 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=11.2
Q ss_pred HHHhhhhh---hcccccccccccC
Q 011630 257 AIFIWNTC---WGRKAITDFISCH 277 (481)
Q Consensus 257 a~~iWn~~---~~~r~l~Rfl~r~ 277 (481)
.+++|.++ .-||+-.||-+..
T Consensus 28 llliwk~~~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 28 ALLIWKLLITIHDRKEFAKFEEER 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667544 2355566665443
Done!