Query 011630
Match_columns 481
No_of_seqs 75 out of 77
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 12:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pi2a1 b.40.4.3 (A:44-171) Re 32.9 15 0.0011 29.4 3.4 19 281-299 73-91 (128)
2 d1wnaa1 d.319.1.1 (A:1-127) Hy 32.8 19 0.0014 30.0 4.0 64 351-428 30-102 (127)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 29.7 12 0.00089 33.9 2.6 31 219-249 5-35 (248)
4 d2pi2a1 b.40.4.3 (A:44-171) Re 20.4 1.7E+02 0.012 22.8 7.7 23 419-441 76-98 (128)
5 d1ltla_ b.40.4.11 (A:) DNA rep 12.2 62 0.0045 27.9 3.2 17 283-299 202-218 (239)
6 d2k7ia1 d.348.1.1 (A:1-62) Unc 11.6 40 0.0029 24.5 1.3 16 334-349 9-24 (62)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 11.0 76 0.0056 23.6 2.9 17 245-261 6-22 (158)
8 d1ueba2 b.40.4.5 (A:64-126) El 10.4 1.1E+02 0.0078 21.9 3.4 24 419-445 40-63 (63)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.7 1.1E+02 0.0077 23.7 3.4 21 244-264 38-58 (107)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 9.2 1.3E+02 0.0095 19.0 3.0 21 247-267 5-25 (30)
No 1
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.90 E-value=15 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.9
Q ss_pred ccccCCCCCEEEEEEEEEe
Q 011630 281 DLRTAKSGQFVKVTGVVTC 299 (481)
Q Consensus 281 ~Lrs~~dGq~VKItGvVtC 299 (481)
.-..+++|.||||.|.++.
T Consensus 73 ~~~~i~~g~yVrV~G~lk~ 91 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLRS 91 (128)
T ss_dssp -CCCCCTTCEEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEEe
Confidence 3457899999999999987
No 2
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=32.83 E-value=19 Score=29.99 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=41.6
Q ss_pred eeEEEEeCCCc-----eeEEEecCCCceeeeeeecceEEc-CCCCC---CCCCHHHHHhhhhcCCCCCCceeEEEeeeec
Q 011630 351 VDFYISDFQSG-----LRALVKTGSGARVTPFVDDSVVID-IKPEN---KDLSPEFIRWLGQKSLSSDDRLMRLKEGYIK 421 (481)
Q Consensus 351 ~dFyIsD~~sG-----~RALVkaG~GarVtP~Iees~VvD-~~~~~---kd~S~el~~wL~~rnLSsd~r~mRykEgiI~ 421 (481)
.-.||+|.|.. .-+||..|... -.+.| +.|.. ..+=.||.+||.+++ .-+.+|-+|.
T Consensus 30 ~~~lITDwQdqR~qArya~lv~~Gk~~--------ll~~dAFGPafp~G~~ALaELv~wl~~~G------~r~~~EaVv~ 95 (127)
T d1wnaa1 30 KVYLITDWQDKRDQARYALLLHTGKKD--------LLVPDAFGPAFPGGEEALSELVGLLLAQG------ARRFYEAVVS 95 (127)
T ss_dssp EEEEEEECCSSTTSCCEEEEEECSSCE--------EEEEEEESTTSTTHHHHHHHHHHHHHHTT------CCEEEEEEEC
T ss_pred eEEEEecccchhhhhhhHHHhhcCCcc--------cccccccCCCCccHHHHHHHHHHHHHHcC------CchhhhhhcC
Confidence 44688888764 34555555542 22234 44443 344568999999999 4478999999
Q ss_pred CCCEEEE
Q 011630 422 EGSTVSV 428 (481)
Q Consensus 422 eGs~VsV 428 (481)
+|+...|
T Consensus 96 p~e~~~l 102 (127)
T d1wnaa1 96 PGEMTAL 102 (127)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 8875443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=29.71 E-value=12 Score=33.92 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhheeeeeeeechhHHHHHH
Q 011630 219 WLVILIFVMGFIAGGFILGAVHNPILLIVVL 249 (481)
Q Consensus 219 ~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~ 249 (481)
|+++.++..=.+-.+++|.+..+|+++++++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~ 35 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTL 35 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 5555555544455566666666666654443
No 4
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.40 E-value=1.7e+02 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=17.9
Q ss_pred eecCCCEEEEEEEEEecCceeeE
Q 011630 419 YIKEGSTVSVMGIVQRNDNVLMI 441 (481)
Q Consensus 419 iI~eGs~VsViGvv~r~~~vlmI 441 (481)
.|++|.-|-|.|.++--.+.-.|
T Consensus 76 ~i~~g~yVrV~G~lk~f~~~~~i 98 (128)
T d2pi2a1 76 VVPPETYVKVAGHLRSFQNKKSL 98 (128)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEE
T ss_pred cccCCCEEEEEEEEEeeCCeEEE
Confidence 68899999999999765555443
No 5
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.23 E-value=62 Score=27.93 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=15.0
Q ss_pred ccCCCCCEEEEEEEEEe
Q 011630 283 RTAKSGQFVKVTGVVTC 299 (481)
Q Consensus 283 rs~~dGq~VKItGvVtC 299 (481)
+.+++||.|+|+|.+++
T Consensus 202 d~~~pGd~V~i~GI~~~ 218 (239)
T d1ltla_ 202 DTLTPGDIVRVTGTLRT 218 (239)
T ss_dssp TCCCTTCEEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEEE
Confidence 35899999999999976
No 6
>d2k7ia1 d.348.1.1 (A:1-62) Uncharacterized protein Atu0232 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.61 E-value=40 Score=24.46 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=10.3
Q ss_pred CCCcceeeeeeeeeee
Q 011630 334 PKHRHFTWGLRSLERH 349 (481)
Q Consensus 334 ~~h~r~~W~l~~~Er~ 349 (481)
++++.++|+|++.+.+
T Consensus 9 d~~g~~rfrL~a~Ng~ 24 (62)
T d2k7ia1 9 DKAGEYRFRFKASNGE 24 (62)
T ss_dssp CTTSCEEEEECCTTSC
T ss_pred CCCCCEEEEEEeCCCC
Confidence 4456677777766654
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.98 E-value=76 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011630 245 LIVVLVLFAVIAAIFIW 261 (481)
Q Consensus 245 l~~~~~lfa~vaa~~iW 261 (481)
|+||++++++++++.+-
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 8
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=10.38 E-value=1.1e+02 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.3
Q ss_pred eecCCCEEEEEEEEEecCceeeEeCCC
Q 011630 419 YIKEGSTVSVMGIVQRNDNVLMIVPPP 445 (481)
Q Consensus 419 iI~eGs~VsViGvv~r~~~vlmI~pP~ 445 (481)
+|+||+.|.| +-+++.++-|.+|+
T Consensus 40 ~L~eg~~~~v---~~~~~~~i~i~lPT 63 (63)
T d1ueba2 40 FFKEGMTALG---DMYEGQPIKVTPPT 63 (63)
T ss_dssp GCCTTCEEEE---EEETTEEEEEECCS
T ss_pred cccCCCEEEE---EEECCEEEEEECCC
Confidence 7889988766 45788899888884
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.68 E-value=1.1e+02 Score=23.66 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 011630 244 LLIVVLVLFAVIAAIFIWNTC 264 (481)
Q Consensus 244 ll~~~~~lfa~vaa~~iWn~~ 264 (481)
++++++.+|++|.++++|-.+
T Consensus 38 v~~i~~~I~~~V~~~~~~~~~ 58 (107)
T d3ehbb2 38 VLYIITAVTIFVCLLLLICIV 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555566667777776433
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.17 E-value=1.3e+02 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhhcc
Q 011630 247 VVLVLFAVIAAIFIWNTCWGR 267 (481)
Q Consensus 247 ~~~~lfa~vaa~~iWn~~~~~ 267 (481)
.-+.+|+-++++|.+.++|+.
T Consensus 5 ~yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred ehHHHHHHHHHHHHHHHHhcC
Confidence 445567777888888777653
Done!