BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011631
(481 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/515 (60%), Positives = 371/515 (72%), Gaps = 41/515 (7%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MAASLDEAYLDITEVC ER ++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDIN
Sbjct: 197 MAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDIN 256
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVLP++RMAVMTFISSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+
Sbjct: 257 KPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCAL 316
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG T+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DM
Sbjct: 317 FSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDM 376
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEGL GRTLTLKLKTASFEVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR
Sbjct: 377 QKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLR 436
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++ FNEDK SDPTQKTL NF+ SG AS K V + + LGSD +D + D E +S+D
Sbjct: 437 ISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSID 496
Query: 301 VSETNNY-----------------------EFGDPVCDNSLPDLNDE--NCSFSNKISEV 335
ET +Y G +N LP LN + N +
Sbjct: 497 NHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNELP-LNGSVAKVNAPNVVGCA 555
Query: 336 EKIHENEVSQLLEGNSLVLRQE-EGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDY 394
K H+ +VS L+E +S ++ E + D + D+ D+ V SSNQK+QF+W++DY
Sbjct: 556 PKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDL--DDGV-PSSNQKEQFLWVNDY 612
Query: 395 KCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRK 454
KCSLCG E+PP+F+EERQEH DFHLAE+LQKEES + ++ ++ +QRDH AS R+
Sbjct: 613 KCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQR---FSQRDHTASQRR 669
Query: 455 RKKQ--------KLFEKEGTHIPIDMFFAKRNRNF 481
K+ K +KE H+PIDMFF K N+NF
Sbjct: 670 HKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 704
>gi|449438619|ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
gi|449495765|ref|XP_004159938.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
Length = 693
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 290/505 (57%), Positives = 367/505 (72%), Gaps = 28/505 (5%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AASLDEAYLDITEVC+ERG++ EIA++LRTS++EE GLTCSAGVA NRLLAKVCSDIN
Sbjct: 193 LAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIFEETGLTCSAGVAANRLLAKVCSDIN 252
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPNDR A++TFISSLPIRKIGGIGKVTEHIL+D GINTCEEMLQKG LCA+
Sbjct: 253 KPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCAL 312
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLGST+TPQ RFRKSIS+ERTF+ T D+ L+++KLA++AEMLS DM
Sbjct: 313 FSQSSADFFLSVGLGLGSTDTPQVRFRKSISNERTFAATTDERLIFQKLADLAEMLSMDM 372
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+KEGL GRTLTLKLKTASFEVRTRAVTLQKYI SS DIL+ AS LLKAELPVSLRLIGLR
Sbjct: 373 EKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQQASRLLKAELPVSLRLIGLR 432
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++QFNED A DPTQ ++T F+TSG A++K GD SL +D N+ +DD E +D
Sbjct: 433 ISQFNEDGATAGLDPTQISITRFITSGDATRKSTGDCCSLNTDSNNHGFMDDTEIDTCID 492
Query: 301 VSETN---NYEFGDPVCDNSLPDLNDENCSFSN---KISEVEKIHEN----------EVS 344
T+ +++ + DN +++D NC+ +N K E E + N +
Sbjct: 493 GYGTDSETHHQVSNQRIDNKFSNMDDSNCTSTNDAEKSEEPENLLRNASADQANISTAIG 552
Query: 345 QLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVG-------TSSNQKDQFIWLDDYKCS 397
+ + ++R+ + C ++ + P+N V S + Q W+D+YKC+
Sbjct: 553 STSDSSDALIRRVSSTACSSSRNLEGN--PNNNVDGENQVEVRSPDNNGQIWWIDNYKCT 610
Query: 398 LCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKK 457
+CG E+P SF++ERQEH DFH+AE+LQ+EESG +R TH R ++ ++S RK K+
Sbjct: 611 ICGAEVPASFVDERQEHIDFHIAEKLQEEESG--IRSRTHMPRQRTADKNLLSSPRKPKR 668
Query: 458 QK-LFEKEGTHIPIDMFFAKRNRNF 481
QK EKE HIPID+FF K N+ F
Sbjct: 669 QKSTPEKEVKHIPIDLFFMKTNQKF 693
>gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 308/489 (62%), Positives = 360/489 (73%), Gaps = 32/489 (6%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MAASLDEAYLDITEVC ER ++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDIN
Sbjct: 197 MAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDIN 256
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVLP++RMAVMTFISSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+
Sbjct: 257 KPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCAL 316
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG T+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DM
Sbjct: 317 FSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDM 376
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEGL GRTLTLKLKTASFEVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR
Sbjct: 377 QKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLR 436
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++ FNEDK SDPTQKTL NF+ SG AS K V + + LGSD +D + D E +S+D
Sbjct: 437 ISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSID 496
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
ET +Y D + N L DL+ N + SN +++ +E L N V + E
Sbjct: 497 NHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNE------LPLNGSVAKCESNR 550
Query: 361 CCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLA 420
D + D+ D+ V SSNQK+QF+W++DYKCSLCG E+PP+F+EERQEH DFHLA
Sbjct: 551 -PDRARRTNNDL--DDGV-PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLA 606
Query: 421 ERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQ--------KLFEKEGTHIPIDM 472
E+LQKEES + R+ AS R+ K+ K +KE H+PIDM
Sbjct: 607 EKLQKEESDN--------------SRNLTASQRRHKRHKSSKKEGSKSSQKESKHLPIDM 652
Query: 473 FFAKRNRNF 481
FF K N+NF
Sbjct: 653 FFVKSNQNF 661
>gi|356539372|ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max]
Length = 663
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/486 (61%), Positives = 362/486 (74%), Gaps = 23/486 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVCRER + EIA+ELR VYEE GLTCSAGVAPNRLLAKVCSDIN
Sbjct: 192 IAGSLDEAYLDITEVCRERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDIN 251
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+VLPNDRMAVMTF+SSLPIRKIGGIGKVTEHIL+ VFGINTCE+ML+K S +CA
Sbjct: 252 KPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKSSYICAF 311
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS STADFF SVGLGLG T++PQ RFRKSISSERTFS T+D+ LL++KL E+AEMLSADM
Sbjct: 312 FSQSTADFFCSVGLGLGQTDSPQVRFRKSISSERTFSATKDEVLLHKKLEELAEMLSADM 371
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEGL GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA LL+AELP+S+RLIGLR
Sbjct: 372 QKEGLSGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLQAELPISVRLIGLR 431
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
V+QFN DK A SDPTQKT+TNF+TSG ++ S D+ D + + ET +S+D
Sbjct: 432 VSQFNGDKCSAKSDPTQKTITNFITSGDVNRNC-----SSFPDVADHDFVSNAETDMSID 486
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSF--SNKISEVE-------KIHENEVSQLLEGNS 351
+T ++ DP N L D++ ++C+ S+ + EV+ H + ++++L G++
Sbjct: 487 SRQTGQLDWRDPFDGNYLSDVDYQSCTVQKSDGVEEVQTSSNDATSSHYSGLTEVL-GST 545
Query: 352 LVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEER 411
L Q EG + +D D S Q+ +WL+DYKCSLCG E+PPSF+EER
Sbjct: 546 SYLGQVEGINVKNGSNLLEDERLD-----SCCQEKTMLWLNDYKCSLCGIELPPSFVEER 600
Query: 412 QEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPID 471
EHSDFHLAE+LQKEES + + + + Q+D + K KKQKL +KEG++ PID
Sbjct: 601 LEHSDFHLAEKLQKEESSIHQKSVPSQS---KGQKDGVTRQSKSKKQKLSQKEGSYTPID 657
Query: 472 MFFAKR 477
FF K+
Sbjct: 658 YFFVKK 663
>gi|357480655|ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula]
gi|355511948|gb|AES93571.1| DNA polymerase IV [Medicago truncatula]
Length = 706
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/438 (62%), Positives = 329/438 (75%), Gaps = 22/438 (5%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVCRER + EIA+E+R V EE GLTCSAGVAPNRLLAKVCSDIN
Sbjct: 218 IAGSLDEAYLDITEVCRERNVKSEEIAQEIRVGVLEETGLTCSAGVAPNRLLAKVCSDIN 277
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+VLPNDR+AVMTFISSLPIRKIGGIGKVTE IL++VFGI+TCE+ML KGS L A+
Sbjct: 278 KPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTERILKEVFGISTCEQMLDKGSYLSAL 337
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS STADFF SVGLGLG T++PQ RFRKSIS+ERTFS +ED+ALL++KLAE+AEMLS DM
Sbjct: 338 FSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSASEDEALLHKKLAELAEMLSTDM 397
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEGL GRTLTLKLKTASFEVR RAVTLQ YI+SS+DILKHAS LLKAELPVS+RLIGLR
Sbjct: 398 QKEGLHGRTLTLKLKTASFEVRNRAVTLQNYINSSDDILKHASKLLKAELPVSVRLIGLR 457
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
V+QF+ K A DPTQKT+TNF+TSG A++K NS SD+ D + D ET +SLD
Sbjct: 458 VSQFSGQKCGATPDPTQKTITNFITSGEANRK-----NSSFSDVTDHDFVTDTETDLSLD 512
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENE----------VSQLLEGN 350
T + DP + D+N ++ + K + EK+ ++ +++L G+
Sbjct: 513 GRHTGQLDSRDPFDGDHSLDVNYQSSTL-RKTAGAEKVRTSDNADASSNHSGCTKVLGGS 571
Query: 351 SLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEE 410
+ + EG + + +D P+ S Q+ +WLDDYKCSLCG E+PPSF+EE
Sbjct: 572 TSFQGKFEGKNVNNGSNLLEDDRPN------SCQEMIMLWLDDYKCSLCGAELPPSFVEE 625
Query: 411 RQEHSDFHLAERLQKEES 428
R EHSDFH AE LQKEES
Sbjct: 626 RLEHSDFHFAELLQKEES 643
>gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana]
gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana]
gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana]
Length = 671
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 273/482 (56%), Positives = 340/482 (70%), Gaps = 14/482 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDIN
Sbjct: 195 IAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDIN 254
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+
Sbjct: 255 KPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYAL 314
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM
Sbjct: 315 FSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDM 374
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR
Sbjct: 375 KKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLR 434
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVS 298
++QF E+ +R SDP+Q T+T F+ +S++ + D +S D N +CL +D+ +VS
Sbjct: 435 MSQFVEE-IRN-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVS 492
Query: 299 LDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEE 358
ET++ D V ++ I E + + E Q+LEG+SL+ + +E
Sbjct: 493 FGSHETSSAHLKDVVEYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE 547
Query: 359 GSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFH 418
C D + + + Q + W+D YKC LCG E+PPSF+EERQEHSDFH
Sbjct: 548 --CKPDTSHSMNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFH 605
Query: 419 LAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRN 478
LA+RLQ EE+GS + R + ++ + + +K++ + HIPI FF K N
Sbjct: 606 LAQRLQNEETGSSSSTTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSN 662
Query: 479 RN 480
+N
Sbjct: 663 QN 664
>gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 636
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/481 (55%), Positives = 321/481 (66%), Gaps = 47/481 (9%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDIN
Sbjct: 195 IAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDIN 254
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL NDR VMTF+SSLP+RKIGGIGKVTEHIL+D GI TCEEM+QKG LL A+
Sbjct: 255 KPNGQFVLQNDRSTVMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPLLYAL 314
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG T+TPQ R RKSISSERTF+ T D+ LLY KLAEIAEMLS DM
Sbjct: 315 FSQSSADFFLSVGLGLGGTDTPQVRSRKSISSERTFAATGDERLLYSKLAEIAEMLSHDM 374
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR
Sbjct: 375 KKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLR 434
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++QF ++R SDP+Q T+T F+ +S++ + D +S D + +CL +D S+S
Sbjct: 435 MSQF-VGEIRN-SDPSQGTITKFIVQKDSSRQDLDDNDSFDLDASKNCLSND--LSLSFG 490
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
ET+ D V E E ++ ++ QE
Sbjct: 491 SHETSYAHLKDVV--------------------------EYEERSQIDSEKVIPNQE--- 521
Query: 361 CCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLA 420
C K N S+N W+D YKC LCG E+PPSF+EERQEH +
Sbjct: 522 CV-------KKKKGRNSFSISAN--GPLYWVDGYKCVLCGIELPPSFVEERQEHLLIFIL 572
Query: 421 ERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT-HIPIDMFFAKRNR 479
R K ++ DL + H + + + KRKKQK +K+ + HIPI FF K N+
Sbjct: 573 LRDFKTKN-LDLVLPQHLQNEGQLTE---KVNSKRKKQKPDQKDSSKHIPIHTFFTKSNQ 628
Query: 480 N 480
N
Sbjct: 629 N 629
>gi|242038847|ref|XP_002466818.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
gi|241920672|gb|EER93816.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
Length = 668
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 259/493 (52%), Positives = 331/493 (67%), Gaps = 32/493 (6%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT VC ERGI+G E+A ELR+++Y+E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 196 IATSLDEAYLNITNVCIERGITGEEVATELRSAIYQETGLTCSAGVAPNRMIAKVCSDIN 255
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPNDR AV+TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK + LCA+
Sbjct: 256 KPNGQFILPNDREAVLTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKAAFLCAL 315
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS +ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL+ KL +AE L+ D+
Sbjct: 316 FSEGSADFFLSVGLGLGGTETPEQRQRKSISCERTFAATNDSSLLFEKLDSLAENLTDDL 375
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEGL+G+TLTLKLKTA FEVRTRAVT + YI+S EDIL +A+ LLKAE+P+SLRL+GLR
Sbjct: 376 QKEGLKGKTLTLKLKTADFEVRTRAVTTRNYINSKEDILVYATKLLKAEMPLSLRLMGLR 435
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM-------TSGHASKKIV---GDQNSLGSDINDDCLI 290
++Q +++K PS TQKTL F ++I G N S + L+
Sbjct: 436 MSQLHDEK-DDPSTSTQKTLDIFFRSSNGNSNVNGNVQRITNTSGQDNDSISLTTKEYLV 494
Query: 291 DDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGN 350
D T VS T+ +F L+DE+C + S +E +S+ L G
Sbjct: 495 PDAGTGVS-----TDQQDFF----------LHDESCFIPEQRSFGNHSNEAVISKPLGGT 539
Query: 351 SL--VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFI 408
L V + + + + E D I+P K SS++ DQ W+D Y CS+CG E+PP F
Sbjct: 540 KLDDVSSSAKVAPAEKLNEPDNLISP--KAVASSSKPDQQSWIDGYICSICGFELPPGFE 597
Query: 409 EERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHI 468
EER EHSDFHLAE LQ+EE+ R +++ ER +R + +KK K KEG HI
Sbjct: 598 EERLEHSDFHLAETLQQEEAVDGTRHISN-ERLADRERPCSTTPTPKKKLKS-SKEGKHI 655
Query: 469 PIDMFFAKRNRNF 481
PID FF K N+N
Sbjct: 656 PIDAFFTKCNKNL 668
>gi|293334565|ref|NP_001167938.1| uncharacterized protein LOC100381652 [Zea mays]
gi|223944997|gb|ACN26582.1| unknown [Zea mays]
Length = 535
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/495 (51%), Positives = 329/495 (66%), Gaps = 36/495 (7%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 61 IATSLDEAYLNITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDIN 120
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPNDR AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+
Sbjct: 121 KPNGQFILPNDREAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCAL 180
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+
Sbjct: 181 FSESSADFFLSVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDL 240
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEG +G+TLTLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR
Sbjct: 241 QKEGFKGKTLTLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLR 300
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKET 295
++Q +++K PS TQKTL F S + NS G D ND + KE
Sbjct: 301 MSQLHDEK-DDPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEE 358
Query: 296 SVSLDVS---ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL 352
++ D T +F L+DE C I E ++ +N+ + + + L
Sbjct: 359 YLAPDAGTSVSTGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDPL 404
Query: 353 -------VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 405
V + + ++E D I+P K +SS++ DQ W+D Y CS+CG E+PP
Sbjct: 405 GGTKSDDVSSSAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPP 462
Query: 406 SFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEG 465
F EER EHSDFHLAE LQ+EE+ R +++ R + +K+ K KEG
Sbjct: 463 GFEEERLEHSDFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKS---SKEG 519
Query: 466 THIPIDMFFAKRNRN 480
HIPID FF K N++
Sbjct: 520 KHIPIDSFFTKCNKS 534
>gi|326498699|dbj|BAK02335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 655
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/493 (51%), Positives = 316/493 (64%), Gaps = 45/493 (9%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVC ERGI+G E+A ELR +V++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 196 LATSLDEAYLDITEVCSERGITGEEVASELRDAVHQETGLTCSAGVAPNRMIAKVCSDIN 255
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPNDR AV TF+S+LPIRKIGGIGKVTE +L V GI TC+EMLQK + LCA+
Sbjct: 256 KPNGQFILPNDRDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQEMLQKAAFLCAL 315
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS + DFFLSVGLGLG T TP+ R RKS+S ERTFS T D LL+ KL +AE L+ DM
Sbjct: 316 FSEGSTDFFLSVGLGLGGTETPEHRLRKSMSCERTFSATNDSRLLFEKLDNLAENLADDM 375
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRA T Q YISS EDIL +A LLKAE+P+SLRL+GLR
Sbjct: 376 QKECLKGRTLTLKLKTAAFEVRTRAATAQNYISSKEDILIYAKKLLKAEMPLSLRLMGLR 435
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM--------TSGHASKKIV----GDQNSLGSDINDDC 288
++ F+ +K + S PTQKTL F T+G + GD + + + D+C
Sbjct: 436 MSHFSGEKDDSTS-PTQKTLDRFFHSSDINSNTNGTNGASCIDVSGGDNDCNDATMKDEC 494
Query: 289 LIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 348
I D E V +D ++ P +S+ + ++E S S K++ +EK +E+ L
Sbjct: 495 SIHDAEKDVPVDQRPSHEENSSVPEGASSV-NYDNEVASSSWKVTRIEKF--DELGDLTS 551
Query: 349 GNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFI 408
+ + G Q W+D Y CS+CG E+PP F
Sbjct: 552 SKASASSSKHG---------------------------QHFWVDGYICSMCGFELPPCFE 584
Query: 409 EERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHI 468
EERQEHSDFHLAE LQ+EE+ L+ +ER + +KK K KEG HI
Sbjct: 585 EERQEHSDFHLAEMLQQEEAVDGTARLS-KERLAERPCSSATTPTPKKKLKS-SKEGKHI 642
Query: 469 PIDMFFAKRNRNF 481
PID FF K N+N
Sbjct: 643 PIDSFFLKCNKNL 655
>gi|413933667|gb|AFW68218.1| hypothetical protein ZEAMMB73_188779 [Zea mays]
Length = 670
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/495 (50%), Positives = 328/495 (66%), Gaps = 36/495 (7%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 196 IATSLDEAYLNITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDIN 255
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPND AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+
Sbjct: 256 KPNGQFILPNDWEAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCAL 315
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+
Sbjct: 316 FSESSADFFLSVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDL 375
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKEG +G+TLTLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR
Sbjct: 376 QKEGFKGKTLTLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLR 435
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKET 295
++Q +++K PS TQKTL F S + NS G D ND + KE
Sbjct: 436 MSQLHDEK-DDPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEE 493
Query: 296 SVSLDVS---ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL 352
++ D T +F L+DE C I E ++ +N+ + + + L
Sbjct: 494 YLAPDAGTSVSTGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDPL 539
Query: 353 -------VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 405
V + + ++E D I+P K +SS++ DQ W+D Y CS+CG E+PP
Sbjct: 540 GGTKSDDVSSSAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPP 597
Query: 406 SFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEG 465
F EER EHSDFHLAE LQ+EE+ R +++ R + +K+ K KEG
Sbjct: 598 GFEEERLEHSDFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKS---SKEG 654
Query: 466 THIPIDMFFAKRNRN 480
HIPID FF K N++
Sbjct: 655 KHIPIDSFFTKCNKS 669
>gi|50838892|gb|AAT81653.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
gi|108709841|gb|ABF97636.1| DNA-directed polymerase kappa, putative, expressed [Oryza sativa
Japonica Group]
Length = 616
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/497 (50%), Positives = 325/497 (65%), Gaps = 43/497 (8%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 147 VATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDIN 206
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+
Sbjct: 207 KPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCAL 266
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DM
Sbjct: 267 FSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDM 326
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR
Sbjct: 327 QKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLR 386
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 387 MSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--- 442
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
+Y D + D +L L+++N S +N + N L+
Sbjct: 443 -----DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------- 484
Query: 361 CCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMP 404
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+P
Sbjct: 485 -CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELP 543
Query: 405 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 464
P F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K KE
Sbjct: 544 PGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKE 599
Query: 465 GTHIPIDMFFAKRNRNF 481
G HIPID FF K N+N
Sbjct: 600 GKHIPIDAFFHKVNKNL 616
>gi|115454119|ref|NP_001050660.1| Os03g0616300 [Oryza sativa Japonica Group]
gi|113549131|dbj|BAF12574.1| Os03g0616300 [Oryza sativa Japonica Group]
Length = 617
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/497 (50%), Positives = 325/497 (65%), Gaps = 43/497 (8%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 148 VATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDIN 207
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+
Sbjct: 208 KPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCAL 267
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DM
Sbjct: 268 FSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDM 327
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR
Sbjct: 328 QKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLR 387
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 388 MSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--- 443
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
+Y D + D +L L+++N S +N + N L+
Sbjct: 444 -----DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------- 485
Query: 361 CCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMP 404
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+P
Sbjct: 486 -CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELP 544
Query: 405 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 464
P F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K KE
Sbjct: 545 PGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKE 600
Query: 465 GTHIPIDMFFAKRNRNF 481
G HIPID FF K N+N
Sbjct: 601 GKHIPIDAFFHKVNKNL 617
>gi|222625365|gb|EEE59497.1| hypothetical protein OsJ_11733 [Oryza sativa Japonica Group]
Length = 662
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/497 (50%), Positives = 325/497 (65%), Gaps = 43/497 (8%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 193 VATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDIN 252
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+
Sbjct: 253 KPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCAL 312
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DM
Sbjct: 313 FSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDM 372
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR
Sbjct: 373 QKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLR 432
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 433 MSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--- 488
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
+Y D + D +L L+++N S +N + N L+
Sbjct: 489 -----DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------- 530
Query: 361 CCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMP 404
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+P
Sbjct: 531 -CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELP 589
Query: 405 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 464
P F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K KE
Sbjct: 590 PGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKE 645
Query: 465 GTHIPIDMFFAKRNRNF 481
G HIPID FF K N+N
Sbjct: 646 GKHIPIDAFFHKVNKNL 662
>gi|357115809|ref|XP_003559678.1| PREDICTED: DNA polymerase kappa-like [Brachypodium distachyon]
Length = 626
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/502 (51%), Positives = 316/502 (62%), Gaps = 50/502 (9%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
A SLDEAYL+ITEVC ERGI+G E+A ELR ++++E GLTCS GVAPNR++AKVCSDIN
Sbjct: 150 FATSLDEAYLNITEVCIERGITGEEVASELRGAIHQETGLTCSVGVAPNRMIAKVCSDIN 209
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPN+R AV TF+S+LPIRKIGGIGKVTE +L V GI TC++MLQK + LCA+
Sbjct: 210 KPNGQFILPNERDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQQMLQKAAFLCAL 269
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS + DFFLSVGLGLG T TP+ R RKS+S ERTFS T D +L + KL +AE L+ D+
Sbjct: 270 FSEGSTDFFLSVGLGLGGTETPEHRLRKSMSCERTFSATNDYSLQFEKLDNLAENLADDL 329
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRA T Q YISS EDIL A LLKAELP+SLRL+GLR
Sbjct: 330 QKECLKGRTLTLKLKTAAFEVRTRAATAQSYISSKEDILICAKKLLKAELPLSLRLMGLR 389
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM-----------TSGHASKKIV-GDQNSLGSDINDDC 288
++ +K P+ PTQKTL F T+G +S GD ++G+ D+C
Sbjct: 390 MSHLCGEK-DDPTIPTQKTLDRFFRLSDNNSNVNRTNGASSNDASGGDDCNIGATTKDEC 448
Query: 289 LIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 348
LI D T +S D + F NDEN + S V ++NEV +
Sbjct: 449 LIHDAVTDISSD-----QHTFFS----------NDENIFVPEERSSVN--YDNEV---VS 488
Query: 349 GNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN-----------QKDQFIWLDDYKCS 397
N L G+ DG K +T K S+ + +Q W+D Y CS
Sbjct: 489 SNLLTCDDLGGTKLDGNTSNSK-VTQSEKFDDLSHFTSCKASASSSKPNQQFWVDGYICS 547
Query: 398 LCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKK 457
LCG E+PP F EERQEHSDFHLAE LQ+EE+ LT +ER Q +K K
Sbjct: 548 LCGFELPPCFEEERQEHSDFHLAELLQQEEALDSSGHLT-KERLAERQSTTPTPKKKLKS 606
Query: 458 QKLFEKEGTHIPIDMFFAKRNR 479
KEG HIPID FF K N+
Sbjct: 607 S----KEGKHIPIDSFFLKHNK 624
>gi|125544869|gb|EAY91008.1| hypothetical protein OsI_12613 [Oryza sativa Indica Group]
Length = 1626
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/492 (50%), Positives = 322/492 (65%), Gaps = 43/492 (8%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 193 VATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDIN 252
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+
Sbjct: 253 KPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCAL 312
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DM
Sbjct: 313 FSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDM 372
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
QKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR
Sbjct: 373 QKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLR 432
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 433 MSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--- 488
Query: 301 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 360
+Y D + D +L L+++N S +N + N L+
Sbjct: 489 -----DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------- 530
Query: 361 CCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMP 404
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+P
Sbjct: 531 -CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELP 589
Query: 405 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 464
P F EERQEHSD+HLAE LQ+EE+ L+ +ER + +K+ K KE
Sbjct: 590 PGFEEERQEHSDYHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKE 645
Query: 465 GTHIPIDMFFAK 476
G HIPID FF K
Sbjct: 646 GKHIPIDAFFHK 657
>gi|8569099|gb|AAF76444.1|AC015445_11 Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain [Arabidopsis
thaliana]
Length = 435
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/238 (79%), Positives = 210/238 (88%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDIN
Sbjct: 195 IAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDIN 254
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+
Sbjct: 255 KPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYAL 314
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM
Sbjct: 315 FSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDM 374
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIG
Sbjct: 375 KKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIG 432
>gi|62319917|dbj|BAD93992.1| hypothetical protein [Arabidopsis thaliana]
Length = 402
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 273/407 (67%), Gaps = 14/407 (3%)
Query: 76 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 135
MTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLG
Sbjct: 1 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLG 60
Query: 136 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 195
LG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLK
Sbjct: 61 LGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLK 120
Query: 196 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDP 255
TASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R SDP
Sbjct: 121 TASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IRN-SDP 178
Query: 256 TQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPV 313
+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++ D V
Sbjct: 179 SQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVV 238
Query: 314 CDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDIT 373
++ I E + + E Q+LEG+SL+ + +E C D +
Sbjct: 239 EYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHSMNDNS 291
Query: 374 PDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLR 433
+ + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+GS
Sbjct: 292 NATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEETGSSSS 351
Query: 434 ILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 480
+ R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 352 TTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 395
>gi|302775514|ref|XP_002971174.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
gi|300161156|gb|EFJ27772.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
Length = 561
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/264 (59%), Positives = 201/264 (76%), Gaps = 6/264 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITE CR I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDIN
Sbjct: 202 IARSLDEAYLDITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDIN 261
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL +DR +M F+S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+
Sbjct: 262 KPNGQFVLESDREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISAL 321
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS + DFFLSVGLG+G++ P RKSIS+ERTFS T D +L + L ++AE LS DM
Sbjct: 322 FSTISTDFFLSVGLGIGASEAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDM 381
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
KE L+GRTLTLKLKT++FEVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+R
Sbjct: 382 IKENLQGRTLTLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVR 441
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM 264
V+QF ED DP+QK++ +F+
Sbjct: 442 VSQFKED------DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 390 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 434
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|302756981|ref|XP_002961914.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
gi|300170573|gb|EFJ37174.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
Length = 561
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/264 (59%), Positives = 201/264 (76%), Gaps = 6/264 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYLDITE CR I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDIN
Sbjct: 202 IARSLDEAYLDITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDIN 261
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL +DR +M F+S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+
Sbjct: 262 KPNGQFVLESDREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISAL 321
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS + DFFLSVGLG+G++ P RKSIS+ERTFS T D +L + L ++AE LS DM
Sbjct: 322 FSTISTDFFLSVGLGIGASEAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDM 381
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
KE L+GRTLTLKLKT++FEVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+R
Sbjct: 382 IKENLQGRTLTLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVR 441
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFM 264
V+QF ED DP+QK++ +F+
Sbjct: 442 VSQFKED------DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 390 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 434
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|224060812|ref|XP_002300273.1| predicted protein [Populus trichocarpa]
gi|222847531|gb|EEE85078.1| predicted protein [Populus trichocarpa]
Length = 323
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 145/157 (92%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MAASLDEA+LDITEVC+ERG+S EIAEELR V EE GLTCSAGVAPNRLLAKVCSDIN
Sbjct: 167 MAASLDEAHLDITEVCKERGMSCGEIAEELRKCVNEETGLTCSAGVAPNRLLAKVCSDIN 226
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQFVL NDRMAVMTFISSLPIRKIGGIGKVTEHILRD FGI+TCEEMLQKG LLCA+
Sbjct: 227 KPNGQFVLTNDRMAVMTFISSLPIRKIGGIGKVTEHILRDAFGISTCEEMLQKGGLLCAL 286
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS 157
FSHSTADFFLSVGLG+G T+TPQ R RKSISSERTFS
Sbjct: 287 FSHSTADFFLSVGLGIGKTDTPQVRSRKSISSERTFS 323
>gi|384251631|gb|EIE25108.1| DNA polymerase kappa [Coccomyxa subellipsoidea C-169]
Length = 494
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/248 (52%), Positives = 171/248 (68%), Gaps = 13/248 (5%)
Query: 2 AASLDEAYLDITEVCRE-------RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK 54
A SLDEAYLDIT+ CR + +G +AEE+R V EE LTCS G+ PNRLLAK
Sbjct: 212 AGSLDEAYLDITDYCRAHETTGNGKHGAGEAVAEEIRRRVREETLLTCSCGIGPNRLLAK 271
Query: 55 VCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 114
V SD+ KP+GQ+ +P + A+ F+ LPIRK+ GIGKV+E +L+ G+ C ++L K
Sbjct: 272 VASDMRKPDGQYAIPGEHSAISRFVDPLPIRKVPGIGKVSEQVLK-ALGVEVCADLLAKR 330
Query: 115 SLLCAVFSHSTADFFLSVGLGLGST--NTP---QARFRKSISSERTFSVTEDKALLYRKL 169
LL A+FS +ADFF+ VGLG+G T + P A RK IS ERTF+ A L K
Sbjct: 331 GLLAALFSPISADFFMEVGLGVGRTQHSAPVEDGAVGRKGISVERTFAALSTPADLEAKC 390
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 229
AE+AE L+ D+ EGL+GRT+TLKLKT +FEVRTRA TL ++IS+SEDIL+ A LL+AE
Sbjct: 391 AELAEKLAEDVTGEGLKGRTITLKLKTTNFEVRTRAATLSRHISASEDILREALRLLRAE 450
Query: 230 LPVSLRLI 237
LP+++RL+
Sbjct: 451 LPITIRLM 458
>gi|159487333|ref|XP_001701677.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
gi|158280896|gb|EDP06652.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
Length = 429
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 159/249 (63%), Gaps = 9/249 (3%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDEAYLD+T C SG E A ELR V E GLTCS GVA N++LAK+CSDIN
Sbjct: 181 SGGLDEAYLDVTGYCTRTATSGEEAATELRRLVKEVSGGLTCSVGVACNKMLAKICSDIN 240
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLC 118
KP+GQ+VLP R AVM+F+ +LP+RKI IGKVTE +L+ V G++TC ++L S L
Sbjct: 241 KPDGQYVLPASRAAVMSFLDTLPVRKIPCIGKVTEQVLQGVLGVSTCGQLLAPASRCRLP 300
Query: 119 AVFSHSTADFFLSVGLGLGS------TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI 172
+FS + A FFL LGL T+T RK +S ERTF A ++
Sbjct: 301 LLFSEAAAGFFLEAALGLAPTRHGPKTDTSVDPGRKGLSHERTFRNMSAPAEQEAMAKQL 360
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 232
E L ADM +EG+ GR +TLKLK ++FEV TRA T+ +++ + DIL LL+AE+PV
Sbjct: 361 VEALVADMAEEGIEGRNITLKLKLSTFEVHTRAATMPRHVRTVSDILPAVLRLLRAEMPV 420
Query: 233 SLRLIGLRV 241
+LRL+G+R+
Sbjct: 421 TLRLMGVRM 429
>gi|296194317|ref|XP_002744900.1| PREDICTED: DNA polymerase kappa [Callithrix jacchus]
Length = 861
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 339
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 340 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 398
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 399 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 458
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 459 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKH 518
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + + G
Sbjct: 519 Q---QRSIIGFLQAGNQTPSVNG 538
>gi|431907837|gb|ELK11444.1| DNA polymerase kappa [Pteropus alecto]
Length = 868
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 171/265 (64%), Gaps = 16/265 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDAERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F EDK
Sbjct: 465 FEVKTRAYTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRLSSFPNEEDKKH 524
Query: 251 APSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ +F+ +G+ + G
Sbjct: 525 Q-----QRSIIDFLQAGNQTLSATG 544
>gi|403256450|ref|XP_003920890.1| PREDICTED: DNA polymerase kappa isoform 1 [Saimiri boliviensis
boliviensis]
gi|403256452|ref|XP_003920891.1| PREDICTED: DNA polymerase kappa isoform 2 [Saimiri boliviensis
boliviensis]
Length = 863
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 168/262 (64%), Gaps = 10/262 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 340
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 341 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGST 399
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 400 HLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNF 459
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 460 EVKTRASTVSSVISTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKHQ 519
Query: 254 DPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 520 ---QRSIIAFLQAGNQTPSASG 538
>gi|417405027|gb|JAA49239.1| Putative dna polymerase kappa [Desmodus rotundus]
Length = 866
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 168/257 (65%), Gaps = 16/257 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 344
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LP+RK+ GIGKVTE +L+ GI TC E+ ++ +LL +FS ++ +FL + +GLGS
Sbjct: 345 IKDLPLRKVSGIGKVTEKMLK-ALGIITCTELYEQRALLSLLFSETSWRYFLQISMGLGS 403
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 404 THLPRDGERKSMSVERTFSEMSKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 463
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 464 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRLSSFLNEEDKKH 523
Query: 251 APSDPTQKTLTNFMTSG 267
Q+++ F+ SG
Sbjct: 524 Q-----QRSIVGFLQSG 535
>gi|355750000|gb|EHH54338.1| DNA polymerase kappa [Macaca fascicularis]
Length = 870
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIEADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|395510536|ref|XP_003759530.1| PREDICTED: DNA polymerase kappa [Sarcophilus harrisii]
Length = 865
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 177/283 (62%), Gaps = 13/283 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 291 GTSADEVVKEIRFRIEQKTSLTASAGIAPNTMLAKVCSDKNKPNGQYQISPNRQAVMDFI 350
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 351 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 409
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS+S ERTFS LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 410 QMERDGERKSMSIERTFSEINKAEELYSLCQELCNDLAQDLQREGLKGKTVTIKLKNVNF 469
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F+ ++ R
Sbjct: 470 EVKTRASTVAAVVSTAEEIFAIAKELLKVEIDADYPQPLRLRLMGVRISGFSSEEDRKHR 529
Query: 254 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETS 296
QK++ +F+ G + VG S+ N D ++ ETS
Sbjct: 530 ---QKSIISFLKVGSHTIDPVG---SVLEKNNQDQVMKPPETS 566
>gi|402871879|ref|XP_003899875.1| PREDICTED: DNA polymerase kappa isoform 1 [Papio anubis]
Length = 870
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|380813532|gb|AFE78640.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|355691402|gb|EHH26587.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|109077621|ref|XP_001105220.1| PREDICTED: DNA polymerase kappa isoform 5 [Macaca mulatta]
gi|297294555|ref|XP_002804464.1| PREDICTED: DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|334325286|ref|XP_001368809.2| PREDICTED: DNA polymerase kappa [Monodelphis domestica]
Length = 856
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 170/265 (64%), Gaps = 16/265 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P R AVM FI
Sbjct: 280 GTSAEEVVKEIRFRIKQKTSLTASAGIAPNTVLAKVCSDKNKPNGQYQIPPTRQAVMDFI 339
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIITCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 398
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS S ERTF+ LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 399 QMERDGERKSRSIERTFTEISKAEELYSLCQELCSDLAQDLQREGLKGKTVTIKLKNVNF 458
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EV+TRA T+ +S++E+I A LLKAE+ P+ LRL+G+R++ F NE+
Sbjct: 459 EVKTRASTVAAVVSTAEEIFAIAKELLKAEIDADYPQPLRLRLMGVRISGFANEE----- 513
Query: 253 SDPT--QKTLTNFMTSGHASKKIVG 275
DP Q+++ +F+ +G S +G
Sbjct: 514 -DPKNRQRSIISFLKAGGHSLDTIG 537
>gi|301763685|ref|XP_002917258.1| PREDICTED: DNA polymerase kappa-like [Ailuropoda melanoleuca]
Length = 869
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 251 APSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
>gi|402871881|ref|XP_003899876.1| PREDICTED: DNA polymerase kappa isoform 2 [Papio anubis]
Length = 780
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 315 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLQAGNQALSATG 454
>gi|281339406|gb|EFB14990.1| hypothetical protein PANDA_005468 [Ailuropoda melanoleuca]
Length = 828
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 251 APSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
>gi|410339117|gb|JAA38505.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|410210590|gb|JAA02514.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|397478334|ref|XP_003810503.1| PREDICTED: DNA polymerase kappa isoform 1 [Pan paniscus]
gi|397478336|ref|XP_003810504.1| PREDICTED: DNA polymerase kappa isoform 2 [Pan paniscus]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|410256758|gb|JAA16346.1| polymerase (DNA directed) kappa [Pan troglodytes]
gi|410256760|gb|JAA16347.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|332233863|ref|XP_003266124.1| PREDICTED: DNA polymerase kappa isoform 1 [Nomascus leucogenys]
Length = 870
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLHAGNQALSATG 544
>gi|114599641|ref|XP_001149179.1| PREDICTED: DNA polymerase kappa isoform 6 [Pan troglodytes]
gi|410294520|gb|JAA25860.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|441658787|ref|XP_004091292.1| PREDICTED: DNA polymerase kappa isoform 2 [Nomascus leucogenys]
Length = 780
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLHAGNQALSATG 454
>gi|311249680|ref|XP_003123756.1| PREDICTED: DNA polymerase kappa [Sus scrofa]
Length = 878
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+TLKLK
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 251
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 252 PSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQTLSATG 551
>gi|410039233|ref|XP_003950572.1| PREDICTED: DNA polymerase kappa [Pan troglodytes]
Length = 781
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
>gi|397478338|ref|XP_003810505.1| PREDICTED: DNA polymerase kappa isoform 3 [Pan paniscus]
Length = 781
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 251 APSDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
>gi|6681760|gb|AAF23270.1| DINP protein [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|7705344|ref|NP_057302.1| DNA polymerase kappa [Homo sapiens]
gi|59798438|sp|Q9UBT6.1|POLK_HUMAN RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049286|gb|AAF02540.1|AF163570_1 DINB protein [Homo sapiens]
gi|6463740|dbj|BAA86943.1| DINB1 [Homo sapiens]
gi|30039655|gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens]
gi|119616169|gb|EAW95763.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616170|gb|EAW95764.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616171|gb|EAW95765.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|189054406|dbj|BAG37179.1| unnamed protein product [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|426384398|ref|XP_004058756.1| PREDICTED: DNA polymerase kappa isoform 1 [Gorilla gorilla gorilla]
Length = 871
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|149726533|ref|XP_001504725.1| PREDICTED: DNA polymerase kappa [Equus caballus]
Length = 860
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL V +GLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHQFLHVSMGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 HLARDGERKSRSVERTFSEMSKAEEQYSLCQELCGELAQDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 465 EVKTRASTVSSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEEKKH- 523
Query: 253 SDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 524 ---QQRSIIGFLQAGNQTPSATG 543
>gi|62088162|dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sapiens]
Length = 790
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 207 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 265
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 266 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 324
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 325 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 384
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 385 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 444
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 445 Q---QRSIIGFLQAGNQA 459
>gi|56160426|gb|AAV80827.1| polymerase kappa isoform 1 [Homo sapiens]
Length = 780
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
>gi|6753636|ref|NP_036178.1| DNA polymerase kappa [Mus musculus]
gi|59798433|sp|Q9QUG2.1|POLK_MOUSE RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049288|gb|AAF02541.1|AF163571_1 DINB protein [Mus musculus]
gi|6463734|dbj|BAA86942.1| DINB1 [Mus musculus]
gi|14279087|dbj|BAB59059.1| DNA polymerase kappa [Mus musculus]
Length = 852
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 254 DPTQKTLTNFMTSGHASKKIVGD 276
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>gi|148668569|gb|EDL00888.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
gi|148668570|gb|EDL00889.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
Length = 852
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 254 DPTQKTLTNFMTSGHASKKIVGD 276
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>gi|291413624|ref|XP_002723070.1| PREDICTED: DNA-directed DNA polymerase kappa, partial [Oryctolagus
cuniculus]
Length = 774
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ V+PN R AVM F
Sbjct: 198 GTSAEEVVKEIRFRIKQKTTLTASAGIAPNTMLAKICSDKNKPNGQYQVIPN-RQAVMNF 256
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ G+ TC E+ Q+ +LL +FS ++ +FL V LGLGS
Sbjct: 257 IKDLPIRKVSGIGKVTEKMLK-ALGVVTCTELYQQRALLSLLFSETSWHYFLHVSLGLGS 315
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK
Sbjct: 316 THLARDGERKSMSIERTFSELSKAEEQYSLCQELCRDLAQDLQKEGLKGRTVTVKLKNVD 375
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S+SE+I A LL+ E+ P+ LRL+G+RV+ F EDK +
Sbjct: 376 FEVKTRASTVPCLVSTSEEIFAVAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEDKKQ 435
Query: 251 APSDPTQKTLTNFMTSGH 268
QK++ F+ +G+
Sbjct: 436 -----QQKSIVGFLQTGN 448
>gi|426384400|ref|XP_004058757.1| PREDICTED: DNA polymerase kappa isoform 2 [Gorilla gorilla gorilla]
Length = 781
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
>gi|326668001|ref|XP_691219.4| PREDICTED: DNA polymerase kappa [Danio rerio]
Length = 902
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 159/256 (62%), Gaps = 14/256 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R VM F+
Sbjct: 283 GTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVVMDFM 342
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 343 KDLPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHISLGLGST 401
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS+S+ERTF D Y E+ L+ D+Q+EGL+G+T+TLKLK F
Sbjct: 402 YMERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKLKNVKF 461
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 251
EV+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F EDK
Sbjct: 462 EVKTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFISTEDK--- 518
Query: 252 PSDPTQKTLTNFMTSG 267
P QK++ F+ G
Sbjct: 519 --KPLQKSIMGFLQKG 532
>gi|56160410|gb|AAV80819.1| polymerase kappa isoform 3 [Mus musculus]
Length = 772
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 174/282 (61%), Gaps = 15/282 (5%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MA SLDEAYL+IT+ +ER + E + + + G G+APN +LAKVCSD N
Sbjct: 192 MAMSLDEAYLNITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKN 246
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +
Sbjct: 247 KPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLL 305
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E+ L+ D+
Sbjct: 306 FSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDL 365
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSL 234
QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ L
Sbjct: 366 QKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRL 425
Query: 235 RLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 276
RL+G+R++ F+ + R Q+++ F+ +G+ + GD
Sbjct: 426 RLMGVRMSTFSSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 464
>gi|348544851|ref|XP_003459894.1| PREDICTED: DNA polymerase kappa-like [Oreochromis niloticus]
Length = 875
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 170/259 (65%), Gaps = 20/259 (7%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM FI
Sbjct: 278 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMDFI 337
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
+LP+RK+ GIGKV+E +L + GI+TC + Q+ +LL +FS + FL V LGLGST
Sbjct: 338 HNLPVRKVCGIGKVSEKML-NALGISTCSHLGQQMALLSLLFSETAWHHFLEVSLGLGST 396
Query: 140 NTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 196
P+ RKS+S+ERTF S E++ L R E+ E L+ DM+KEGL+G+T+TLKLK
Sbjct: 397 YIPRHEERKSMSTERTFKELSKVEEQLSLCR---ELCEDLAEDMKKEGLKGKTVTLKLKN 453
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFN--EDK 248
+FEV+TRA+TL +++ ++I A LLK E+ P+ LRL+G+R++ F +DK
Sbjct: 454 VNFEVKTRAMTLPCAVATVDEIFAVAKDLLKTEIENESPQPLRLRLMGVRISAFASLDDK 513
Query: 249 VRAPSDPTQKTLTNFMTSG 267
P QK++ F+ SG
Sbjct: 514 -----KPLQKSIIGFLQSG 527
>gi|395825506|ref|XP_003785969.1| PREDICTED: DNA polymerase kappa [Otolemur garnettii]
Length = 876
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD +KPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTKLTASAGIAPNTMLAKICSDKHKPNGQYQILPN-REAVMDF 352
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ G+GKVTE +L+ GI TC E+ Q+ +LL +F ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGVGKVTEKMLK-ALGIITCTELYQQRALLSLLFPETSWHYFLHISLGLGS 411
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 412 TYLARDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 471
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 250
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 472 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRISSFPNEEDKKQ 531
Query: 251 APSDPTQKTLTNFMTSGHAS 270
QK++ F+ +G+ S
Sbjct: 532 Q-----QKSIIGFLQAGNQS 546
>gi|355712668|gb|AES04426.1| polymerase kappa [Mustela putorius furo]
Length = 878
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 166/265 (62%), Gaps = 14/265 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 296 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMDFI 355
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI C E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 356 KDLPIRKVSGIGKVTEKMLK-ALGIINCTELYQQRALLSLLFSETSWHHFLHISLGLGST 414
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTF+ Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 415 HLTRDGERKSMSVERTFNEISKAEEQYSLCRELCSELAQDLQKEGLKGRTVTIKLKNVNF 474
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 251
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 475 EVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPSEEDKKHQ 534
Query: 252 PSDPTQKTLTNFMTSGHASKKIVGD 276
Q+T+ F+ +G+ + GD
Sbjct: 535 -----QRTIIGFLQAGNPTLSAPGD 554
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 168/255 (65%), Gaps = 12/255 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI
Sbjct: 285 GTSVEEAVKEMRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRIANDRQAIKDFI 344
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ + TC ++ Q+ +LL +FS ++ F+ + LGLGST
Sbjct: 345 KDLPIRKVPGIGKVTEKMLK-ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGST 403
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S+ERTFS Y E+ LS D+QKEGL+G+T+T+KLK +F
Sbjct: 404 HVERDGERKSMSTERTFSEMSSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTF 463
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EVRTRA+T+ +S+ E+I A +LKAE+ P+ LRL+G+RV+ F NE++ +
Sbjct: 464 EVRTRALTVTSPVSTEEEIFAVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH- 522
Query: 253 SDPTQKTLTNFMTSG 267
QK++T+F+ SG
Sbjct: 523 ---HQKSITSFLHSG 534
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 168/255 (65%), Gaps = 12/255 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI
Sbjct: 285 GTSVEEAVKEMRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYRIANDRQAIKDFI 344
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ + TC ++ Q+ +LL +FS ++ F+ + LGLGST
Sbjct: 345 KDLPIRKVPGIGKVTEKMLK-ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGST 403
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S+ERTFS Y E+ LS D+QKEGL+G+T+T+KLK +F
Sbjct: 404 HVERDGERKSMSTERTFSEMSSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTF 463
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EVRTRA+T+ +S+ E+I A +LKAE+ P+ LRL+G+RV+ F NE++ +
Sbjct: 464 EVRTRALTVTSPVSTEEEIFAVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH- 522
Query: 253 SDPTQKTLTNFMTSG 267
QK++T+F+ SG
Sbjct: 523 ---HQKSITSFLHSG 534
>gi|31127116|gb|AAH52820.1| Polk protein [Mus musculus]
Length = 739
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 209
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 268
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 269 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 328
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 329 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 388
Query: 254 DPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 389 ---QRSIIGFLQAGNQALSSTG 407
>gi|348551130|ref|XP_003461383.1| PREDICTED: DNA polymerase kappa-like [Cavia porcellus]
Length = 853
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 10/262 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMEFI 346
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 347 KDLPIRKISGIGKVTEKMLK-ALGIITCAELYQQRALLSLLFSETSWHYFLHISLGLGST 405
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTF+ Y E+ ++ D+QKEGL+GRT+T+KLK +F
Sbjct: 406 HLARDGERKSMSVERTFNEINKAEDQYSLCQELCSEIAQDLQKEGLKGRTVTVKLKNVNF 465
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F + A
Sbjct: 466 EVKTRASTVSSVVSTEEEIFAIAKELLRTEIDAASPYPLRLRLMGVRISSFPSE---ADK 522
Query: 254 DPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 523 KHQQRSIIGFLQAGNQALSAPG 544
>gi|344272661|ref|XP_003408150.1| PREDICTED: DNA polymerase kappa [Loxodonta africana]
Length = 864
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 9/237 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIHPNRQAVMDFI 346
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIG+VTE +L+ GI TC E+ Q+ +LL +FS ++ +FL V LGLGST
Sbjct: 347 KDLPIRKISGIGQVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHVSLGLGST 405
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +F
Sbjct: 406 HLERDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVNF 465
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDK 248
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 466 EVKTRASTVSSVVSTAEEIFAIAKELLRTEVDADFPHPLRLRLMGVRISSFANEEDK 522
>gi|73952201|ref|XP_536321.2| PREDICTED: DNA polymerase kappa isoform 2 [Canis lupus familiaris]
Length = 861
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 171/264 (64%), Gaps = 14/264 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 251
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 252 PSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ S+ G
Sbjct: 525 ----QQRSIIGFLQAGNQSQSAPG 544
>gi|410948820|ref|XP_003981127.1| PREDICTED: DNA polymerase kappa [Felis catus]
Length = 863
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 166/264 (62%), Gaps = 14/264 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 287 GTSAEEAVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDREAVMDFI 346
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ G+ TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 347 KDLPIRKVSGIGKVTEKMLK-ALGVITCTELYQQRALLSLLFSETSWHHFLHISLGLGST 405
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 406 LLARDGDRKSMSVERTFSEMSKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNF 465
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 251
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 466 EVKTRASTVSSVVSTAEEIFAIAKDLLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKKQQ 525
Query: 252 PSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ +G+ + G
Sbjct: 526 -----QRSIIGFLQAGNQALSATG 544
>gi|156121161|ref|NP_001095728.1| DNA polymerase kappa [Bos taurus]
gi|151555691|gb|AAI49025.1| POLK protein [Bos taurus]
gi|296483771|tpg|DAA25886.1| TPA: DNA-directed DNA polymerase kappa [Bos taurus]
Length = 877
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 251
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 252 PSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQALSATG 551
>gi|426232466|ref|XP_004010243.1| PREDICTED: DNA polymerase kappa [Ovis aries]
Length = 871
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 251
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 465 FEVKTRASTVPAVVSTAEEIFVIAKELLRTEIDADFPHPLRLRLMGVRLSGFPNEEEKKH 524
Query: 252 PSDPTQKTLTNFMTSGHASKKIVG 275
Q+++ F+ G+ + G
Sbjct: 525 ----QQRSIIGFLQPGNQALPATG 544
>gi|134105174|pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
gi|134105175|pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
gi|240104255|pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104256|pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104261|pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104262|pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|257472029|pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
gi|257472030|pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 269 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 327
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 328 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 386
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 387 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 446
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 447 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 504
>gi|52695703|pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
gi|52695704|pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 220 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 278
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 279 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 337
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 338 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 397
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 398 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 455
>gi|365812957|pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
gi|365812958|pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 276 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 334
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 335 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 393
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 394 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 453
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 250
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 454 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 511
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 167/259 (64%), Gaps = 16/259 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM F+
Sbjct: 260 GTSVEEAVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMEFV 319
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
+LP+RK+ GIGKV+E +L + GI++C + QK +LL +FS + FL V LGLGS
Sbjct: 320 CNLPVRKVSGIGKVSEKLL-NALGISSCSHLGQKMALLSLLFSETAWHHFLQVSLGLGSA 378
Query: 140 NTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 196
P+ RKS+S+ERTF S E++ L R E+ E L+ D++KEGL+G+T+TLKLK
Sbjct: 379 FIPRHEERKSMSTERTFKEMSAAEEQLSLCR---ELCEDLANDLKKEGLKGKTVTLKLKN 435
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDKVR 250
+FEV+TRA+TL ++++++I A LLK E P+ LRL+G+R++ F +
Sbjct: 436 VNFEVKTRALTLSYPVATADEIFAVAKDLLKTERDNESPQPLRLRLMGVRISAFVSSDEK 495
Query: 251 APSDPTQKTLTNFMTSGHA 269
P QK++ F+ G A
Sbjct: 496 ---QPLQKSIVGFLNPGKA 511
>gi|449278668|gb|EMC86459.1| DNA polymerase kappa, partial [Columba livia]
Length = 864
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 170/257 (66%), Gaps = 16/257 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ +P +R AV+ F+
Sbjct: 278 GNSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDCNKPNGQYKIPPERQAVLDFL 337
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 338 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRNFLDISLGLGST 396
Query: 140 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 196
+ + RKS+S+ERTFS ED+ L R E+ L+ ++QKEGL+G+T+TLKLK
Sbjct: 397 HLERDGERKSMSTERTFSEMNTAEDQYSLCR---ELCRDLAQELQKEGLKGKTVTLKLKN 453
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 250
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 454 VNFEVKTRASTVLSSVSTEEEIFAVAKDLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEK 513
Query: 251 APSDPTQKTLTNFMTSG 267
QK++T+F+ SG
Sbjct: 514 KYQ---QKSITSFLKSG 527
>gi|255075437|ref|XP_002501393.1| predicted protein [Micromonas sp. RCC299]
gi|226516657|gb|ACO62651.1| predicted protein [Micromonas sp. RCC299]
Length = 410
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 3/238 (1%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE G+ G E+A +LR+ V + LTCSAGVAP R LAK+CSD NKP
Sbjct: 175 GSLDEAYLDVTEFMSRTGMDGGEVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKP 234
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQFVL R AV++F+S LP+RK+GG+GKV E L F I TC ++ Q +++ AVF+
Sbjct: 235 NGQFVLERSREAVISFLSDLPVRKVGGVGKVLEGKL-SAFQIRTCGQLRQSLNVIAAVFT 293
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
+T DF SV LG G+ P RK + ERTF+ T D + KL +AE ++ ++QK
Sbjct: 294 PATIDFLFSVALGTGTEQRPPDAQRKGLGHERTFAPTSDPRFIEAKLHGLAEDVAKELQK 353
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 239
E L+ +T+TLK+K ++FEV R +T+ ++++ I + A +LL+ E P +LRL+G+
Sbjct: 354 ENLKAQTVTLKIKKSNFEVMQRQLTVPSS-NAAKVIAEAAILLLRKERPYGALRLVGV 410
>gi|432875108|ref|XP_004072678.1| PREDICTED: DNA polymerase kappa-like [Oryzias latipes]
Length = 871
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 11/264 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM FI
Sbjct: 275 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMDFI 334
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LP+RK+ GIGKV+E +L + I C + Q+ +LL +FS + F+ V LGLGST
Sbjct: 335 QDLPVRKVCGIGKVSEKML-NALEITKCSHLGQQMALLSLLFSETACQNFMEVSLGLGST 393
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS+S ERTF D Y E+ + L+ DM+KEGL+G+T++LKLK +F
Sbjct: 394 RISRHEERKSMSIERTFKELSDAEEQYSLCRELCKDLAEDMKKEGLKGKTVSLKLKNVNF 453
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA TLQ +++ E++ A LLK E+ P+ LRL+G+R++ F +A
Sbjct: 454 EVKTRAQTLQCAVAAEEELFAVAKDLLKTEIDNESPHPLKLRLMGVRMSAFVSSDHKA-- 511
Query: 254 DPTQKTLTNFMTSGHA-SKKIVGD 276
PTQK++ F+ SG + S +I G+
Sbjct: 512 -PTQKSILGFLKSGSSGSSEIKGE 534
>gi|409080276|gb|EKM80636.1| hypothetical protein AGABI1DRAFT_55621 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 619
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 161/276 (58%), Gaps = 6/276 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ A DE YL+IT C E +S + +E+R V+EE LT SAG+APN++LAK+CSD N
Sbjct: 195 LIAGCDEGYLNITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNKMLAKICSDRN 254
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF L DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + + +
Sbjct: 255 KPNGQFQLIPDRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALM 313
Query: 121 FSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
+ L LG+ S PQ RKSI SERTFS +D +L +KL IA L
Sbjct: 314 DKQFGLHYLLKTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELET 373
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
DM + G G+T+TLK K +++V TRA +L +Y+SS ED+ L AE + LRLIG
Sbjct: 374 DMARNGWAGKTITLKYKLDTYQVFTRAKSLDRYVSSKEDLFSIGRKLFLAEGHLKLRLIG 433
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFMT-SGHASKKI 273
LRVT+ + +RAPS K T S H +K+
Sbjct: 434 LRVTKLKD--LRAPSPAGIKKFFEATTSSAHTRRKL 467
>gi|224091441|ref|XP_002187639.1| PREDICTED: DNA polymerase kappa-like, partial [Taeniopygia guttata]
Length = 633
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 169/257 (65%), Gaps = 16/257 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ + +R+AV+ F+
Sbjct: 47 GTSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDHNKPNGQYRISPERLAVLDFL 106
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS + FL + LGLGST
Sbjct: 107 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEVSWRNFLDISLGLGST 165
Query: 140 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 196
+ + RKS+S+ERTFS ED+ L R E+ L+ D+QKEGL+G+T+TLKLK
Sbjct: 166 HLEKDGERKSMSTERTFSEINTAEDQYSLCR---ELCRDLAQDLQKEGLKGKTVTLKLKN 222
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 250
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 223 VNFEVKTRASTVLSSVSTEEEIFTVAKDLLGTEINSVAPHPLRIRLMGVRVSGFLTEEEK 282
Query: 251 APSDPTQKTLTNFMTSG 267
QK++T+F+ SG
Sbjct: 283 KYQ---QKSITSFLKSG 296
>gi|56160408|gb|AAV80818.1| polymerase kappa isoform 2 [Mus musculus]
Length = 793
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 177/299 (59%), Gaps = 28/299 (9%)
Query: 1 MAASLDEAYLDITEVCRERGISG-------IEIAEELRTSVYEEAGLTCS---------- 43
MA SLDEAYL+IT+ +ER I++ L+ ++ L S
Sbjct: 192 MAMSLDEAYLNITQHLQERQDWPEDKRRYFIKMGNYLKIAMMT-LDLAASNLNLLRPAKP 250
Query: 44 AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG 103
G+APN +LAKVCSD NKPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L G
Sbjct: 251 PGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALG 309
Query: 104 INTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA 163
I TC E+ Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS
Sbjct: 310 IVTCTELYQQRALLSLLFSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTE 369
Query: 164 LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS 223
Y E+ L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A
Sbjct: 370 EQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAK 429
Query: 224 VLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 276
LL+ E+ P+ LRL+G+R++ F+ + R Q+++ F+ +G+ + GD
Sbjct: 430 ELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 485
>gi|440910682|gb|ELR60452.1| DNA polymerase kappa [Bos grunniens mutus]
Length = 884
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 169/272 (62%), Gaps = 22/272 (8%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 139 TNTPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 190
T+ RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+
Sbjct: 412 THLASLFIFFISRDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTV 471
Query: 191 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 244
T+KLK +FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F
Sbjct: 472 TIKLKNVNFEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGF 531
Query: 245 -NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 275
NE++ + Q+++ F+ G+ + G
Sbjct: 532 PNEEEKKH----QQRSIIGFLQPGNQALSATG 559
>gi|327262983|ref|XP_003216301.1| PREDICTED: DNA polymerase kappa-like [Anolis carolinensis]
Length = 820
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 17/263 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E EE+R + ++ LT SAG+APN +LAK+CSD NKPNGQF + DR VM FI
Sbjct: 269 GTSAEEAVEEIRFRIEQKTKLTASAGIAPNTMLAKMCSDQNKPNGQFRISPDREHVMNFI 328
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +LR GI TC ++ Q+ +L+ +FS ++ FL + LGLGST
Sbjct: 329 KDLPIRKVPGIGKVTEKMLR-ALGIVTCTDLYQQRALISLLFSETSWHNFLEISLGLGST 387
Query: 140 NTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 197
+ RKS+S+ERTF+ TE++ Y E+ L+ D++KEGL+ RT+TLKLK
Sbjct: 388 QLERDGERKSMSTERTFNEINTEEQ---YSLCKELCADLAQDLKKEGLKARTVTLKLKNV 444
Query: 198 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVR 250
+FEV+TRA T+ +S+ E+I A LL +E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 445 NFEVKTRATTVLSAVSTEEEIFAIAKDLLGSEIVSVAPQPLRLRLMGVRVSGFLNEEEKK 504
Query: 251 APSDPTQKTLTNFMTSGHASKKI 273
QK++ NF+ ++ K+
Sbjct: 505 Y----QQKSIVNFLGKQISASKL 523
>gi|149059108|gb|EDM10115.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
gi|149059109|gb|EDM10116.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
Length = 851
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 254 DPTQKTLTNFMTSGH 268
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
>gi|189491622|ref|NP_612525.1| DNA polymerase kappa [Rattus norvegicus]
gi|187469039|gb|AAI66778.1| Polk protein [Rattus norvegicus]
Length = 851
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 254 DPTQKTLTNFMTSGH 268
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S+ERTFS Y E+ L+ D+QKEGL+G+T+TLKLK +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 254 DPTQKTLTNFMTSG 267
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
>gi|380492100|emb|CCF34847.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 639
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 165/280 (58%), Gaps = 12/280 (4%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E+GI E E++R ++E+ +T SAG+A N LAK+CS++NK
Sbjct: 205 SASIDEAYLNITEYCTEKGIGPAEAVEQMRREIHEKTKITVSAGIAANAKLAKICSNMNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+LPNDR ++ F++ LP RK+ GIG+V E L ++ GINTC ++ + L +F
Sbjct: 265 PNGQFILPNDRSEILRFMAKLPPRKVNGIGRVLERQLAEI-GINTCADLYPQRQFLRPLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F L+V LGLG T P + RKS+ +E TF D L KL A+ L D
Sbjct: 324 GDKAYEFLLNVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLR 235
M++ ++GRTL LK+K ++EV TR V L + I ++D+ + +L + E+P ++LR
Sbjct: 384 MKRAEVKGRTLVLKVKLHTYEVFTRQVVLPRAICLADDLYHFSLPILSKIEEEMPGMTLR 443
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 275
L+GLR T K P F + G S G
Sbjct: 444 LMGLRCTHLVSTK-----KPDTMAFFGFRSRGSGSAASPG 478
>gi|320164110|gb|EFW41009.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 974
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 161/275 (58%), Gaps = 33/275 (12%)
Query: 2 AASLDEAYLDITEVCRE---RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 58
AASLDEAYLD+T R+ G+S ++ E+R + LT SAG+APN +LAK+CSD
Sbjct: 446 AASLDEAYLDLTRHMRQVVPDGVSSADVVREIRGKIQAATQLTASAGIAPNGMLAKICSD 505
Query: 59 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
+NKPNGQ+ LP D + +F++ LP+RK+ GIGKVTE +L + GI TCE+M L
Sbjct: 506 LNKPNGQYHLPGDLEQLKSFVAKLPVRKVSGIGKVTERML-NGLGIVTCEDMFAHRYDLF 564
Query: 119 AVFSHSTADFFLSVGLGLGSTN-----------TPQARF----------RKSISSERTFS 157
+FS + DFFL V LG GS+ TP A F RKSIS ERTF
Sbjct: 565 QLFSPISFDFFLRVSLGAGSSRYEEAVKADAVATPTAAFGFGFAVPDNDRKSISVERTFR 624
Query: 158 VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 217
L K E+ L+AD+ LRGRT+T+KLK F + TRA + Q+YISS+ +
Sbjct: 625 EINTPTALLAKCEELCHKLAADVNSCKLRGRTVTVKLKMVDFRMFTRAASSQRYISSASE 684
Query: 218 ILKHASVLLKAEL--------PVSLRLIGLRVTQF 244
+ + AS +L+ E+ P+ LRL+G+R++
Sbjct: 685 MFELASKILQDEIQQSERAGGPLRLRLMGVRLSAL 719
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 146/225 (64%), Gaps = 7/225 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G E+ E+R + + LT SAG+APN +LAKVCSD NKPNGQF +P+DR A+M FI
Sbjct: 247 GCDAEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSDRQAIMDFI 306
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
+LP+RK+ GIGKV L + GI+TC + ++ ++L +FS ++ L V LGLG+T
Sbjct: 307 RNLPVRKVCGIGKVMAQQL-NALGISTCTHLYEQRAVLSLLFSPVSSSHLLRVALGLGAT 365
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ RKS+S ERTFS A LYRK E+ E L+ D+Q EGL+GRT+T+KLKT +F
Sbjct: 366 RIERESERKSMSVERTFSELSKPADLYRKCWELCEALAKDLQDEGLKGRTITIKLKTVNF 425
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIG 238
+V+ R T+ + +SS ++I A LLK E+ P+ LRL+G
Sbjct: 426 DVKQRGQTVPRAVSSMKEIYDVAEELLKMEIQQCQPQPLRLRLMG 470
>gi|47226716|emb|CAG07875.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 165/259 (63%), Gaps = 19/259 (7%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM F+
Sbjct: 269 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMEFV 328
Query: 80 SSLPIRK-IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
LP+RK + G+GKV+E +L GI++C + QK +LL +FS ++ FL V LGLGS
Sbjct: 329 CDLPVRKVVSGVGKVSEKLL-SALGISSCSHLGQKMALLSLLFSETSWHHFLQVSLGLGS 387
Query: 139 TNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 194
P+ RKS+S+ERTF +V E +L + E+ E L+ D++KEGL+G+T+TLKL
Sbjct: 388 AFIPRHEERKSMSTERTFKEMSAVEEQLSLCH----ELCEDLANDLKKEGLKGKTVTLKL 443
Query: 195 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDK 248
K +FEV+TRA+TL ++++++I A LLK E P+ LRL+G+RV+ F
Sbjct: 444 KNVNFEVKTRALTLPYPVATADEIFTVAKDLLKTERDNESPQPLRLRLMGVRVSAFVSSD 503
Query: 249 VRAPSDPTQKTLTNFMTSG 267
+ P Q+++ F+ SG
Sbjct: 504 HK---KPLQRSIVGFLNSG 519
>gi|56160420|gb|AAV80824.1| polymerase kappa isoform 8 [Mus musculus]
Length = 547
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 7/224 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 237
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 508
>gi|393217821|gb|EJD03310.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 600
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 154/253 (60%), Gaps = 7/253 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ A DE YL+IT+ C + GIS + +E+R V+EE LT SAG+A N K+CSD N
Sbjct: 185 IVAGCDEGYLNITKYCAQHGISPEDCVKEMRQKVHEETKLTASAGIASN----KICSDKN 240
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF LP++R A+ F+ L IRK+ G+G+V E +L D G+ TC ++ +++ +
Sbjct: 241 KPNGQFALPSERDAITAFMRDLSIRKLPGVGRVHERLL-DSIGVKTCGDIYAHRAVIWLM 299
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
+ + F S LG+ S P R RKSI +ERTF+ D L KL E+AE L
Sbjct: 300 DHYFSKIFLYSAYLGIASNVVEPYQRDERKSIGAERTFTPISDHEKLLEKLEEVAEELEN 359
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
DM+ G G+T+TLK K +++V TRA + ++I+ ED+ LLK ELP+ LRLIG
Sbjct: 360 DMRDNGWAGKTVTLKYKLNTYQVYTRAKSFNRWITRKEDLFNTGKELLKPELPLCLRLIG 419
Query: 239 LRVTQFNEDKVRA 251
LRVT+ + + RA
Sbjct: 420 LRVTKLKDLRARA 432
>gi|56160422|gb|AAV80825.1| polymerase kappa isoform 9 [Mus musculus]
Length = 467
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 153/243 (62%), Gaps = 12/243 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MA SLDEAYL+IT+ +ER + E + + + G G+APN +LAKVCSD N
Sbjct: 192 MAMSLDEAYLNITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKN 246
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +
Sbjct: 247 KPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLL 305
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E+ L+ D+
Sbjct: 306 FSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDL 365
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSL 234
QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ L
Sbjct: 366 QKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRL 425
Query: 235 RLI 237
RL+
Sbjct: 426 RLM 428
>gi|393217454|gb|EJD02943.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 150/254 (59%), Gaps = 5/254 (1%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
A DEAYL+IT+ + +S E EELR+ + EE LT SAG+APN +LAK+CSD NKP
Sbjct: 200 AGCDEAYLNITKHLEDHKLSAAECVEELRSKICEETNLTASAGIAPNMMLAKICSDRNKP 259
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF +P R AVM F+ LP+RK+ GIG+V E +L + G+ TC ++ +++ +
Sbjct: 260 NGQFQMPFTREAVMEFMRDLPVRKVPGIGRVGERVL-EAIGVKTCGDIRAARAIIWLMPR 318
Query: 123 HSTADFFLSVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
DF LGL T Q RKS+ RTF + K +++KL IA +L D+
Sbjct: 319 KFAVDFLFETHLGLAPTVVKPYQREERKSVGVSRTFRAVQTKEAIFQKLEYIASLLERDL 378
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+ EG G+ + L K +F V TR T +++IS ED+ L+K LP+ +RL+GLR
Sbjct: 379 ETEGWVGKIVILTYKLDTFRVHTRRATFERWISKKEDLFNIGKDLIKPYLPLRVRLLGLR 438
Query: 241 VTQFNEDKVRAPSD 254
VT + +RAP+D
Sbjct: 439 VTDLID--LRAPTD 450
>gi|327532749|ref|NP_001126479.1| DNA polymerase kappa [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 52
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 53 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 171
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 230
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 231 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 270
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
>gi|55731632|emb|CAH92522.1| hypothetical protein [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 52
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 53 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 171
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 230
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 231 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 270
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
>gi|116200590|ref|XP_001226107.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
gi|88175554|gb|EAQ83022.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
Length = 632
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 156/249 (62%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E + ++ +LR+ ++E+ +T SAG+A N LAK+CS++NK
Sbjct: 216 SASIDEAYLNITEYCAEHDMDPADVVSKLRSEIHEKTHITVSAGIAANARLAKICSNMNK 275
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQFVLP DR+A+M+F+ L R++ GIG+V E L V GI TC ++ + L +F
Sbjct: 276 PNGQFVLPRDRVAIMSFMRDLSCRQVNGIGRVLERELASV-GIKTCGDIYAQRQYLDRLF 334
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F L LGLG TN A RKS+ +ERTF D ALL KL AE L +D
Sbjct: 335 GQKAYEFLLHCHLGLGRTNIQPAEDYERKSVGTERTFRDLGDPALLREKLRRTAEELESD 394
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M+K +GRTL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LR
Sbjct: 395 MRKAECKGRTLCLKVKLHTFEVLTRQVVPPKAVHLADDLYNYSLPMLAKLEQEIPGMKLR 454
Query: 236 LIGLRVTQF 244
L+GLR TQ
Sbjct: 455 LMGLRCTQL 463
>gi|56160406|gb|AAV80817.1| polymerase kappa isoform 1 [Mus musculus]
Length = 533
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 233
EV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 498
>gi|310795414|gb|EFQ30875.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 635
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 171/298 (57%), Gaps = 18/298 (6%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C ++GI E E++R +YE+ +T SAG+A N LAK+CS++NK
Sbjct: 205 SASIDEAYLNITEYCTDKGIGPAEAVEQMRREIYEKTKITVSAGIAANAKLAKICSNMNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+LPNDR ++ F++ LP RK+ G+G+V E L ++ GI TC ++ + L +F
Sbjct: 265 PNGQFILPNDRSEILRFMAKLPPRKVNGVGRVLERQLAEI-GIKTCADLYPQRQFLRPLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F ++V LGLG T P + RKS+ +E TF D L KL A L D
Sbjct: 324 GEKAYEFLINVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLKWTAGELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ ++GRTL LK K ++EV TR V L + I ++D+ A + L+ E+P ++LR
Sbjct: 384 MKRAEVKGRTLVLKAKLHTYEVLTRQVVLPRAIFLADDLYHFALPILAKLQEEMPGMTLR 443
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMT----SGHASKKIVGDQNSLGSD--INDD 287
L+GLR T K P F + SG + K D + G D +NDD
Sbjct: 444 LMGLRCTHLVSTK-----KPDTMAFFGFRSRRSESGTSPVKPSKDNVNAGVDSGLNDD 496
>gi|393245146|gb|EJD52657.1| IMS-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 556
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 172/300 (57%), Gaps = 4/300 (1%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
A DE YL+IT C E ++ + +LR V+E LT SAG+APN LAK+CSD NKP
Sbjct: 188 AGCDEGYLNITAYCDENDMTPDDCVAQLRREVFEATKLTVSAGIAPNMTLAKICSDKNKP 247
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF LP +R ++ F+ LPIRK+ G+G+V E +L D GI TC ++ + + +
Sbjct: 248 NGQFHLPFERDKIIEFMRDLPIRKVPGVGRVQERML-DSIGIRTCGDVYTHRATIHLLGK 306
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
H + D+ L LGLGST P AR RKS+ ERTF+ D+ L KL IA L D+
Sbjct: 307 HFSLDYLLHAYLGLGSTVVQPGAREERKSVGVERTFNPISDQDQLVAKLENIAHTLEEDL 366
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+ G G+T+TLK K +F+ TRA + +Y++ ED+ A LL AE+P+ +RLIG+R
Sbjct: 367 EHGGWAGKTVTLKYKLDTFQSFTRAKSCPRYVNKKEDLFSIAKELLLAEMPLCIRLIGIR 426
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 300
VT + K+ A + ++ L + S + +K+ + + DD L ETS S D
Sbjct: 427 VTNLKDLKI-AENSGIKRFLKHAPGSPNKKRKLSHGELDGVAPAGDDNLKPAAETSGSSD 485
>gi|56160412|gb|AAV80820.1| polymerase kappa isoform 4 [Mus musculus]
Length = 453
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 149/233 (63%), Gaps = 6/233 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
MA SLDEAYL+IT+ +ER + E + + + G G+APN +LAKVCSD N
Sbjct: 192 MAMSLDEAYLNITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKN 246
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +
Sbjct: 247 KPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLL 305
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E+ L+ D+
Sbjct: 306 FSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDL 365
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 233
QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 366 QKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 418
>gi|429857424|gb|ELA32293.1| DNA-directed polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 650
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 154/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E+ IS + E++R V+E +T SAG+A N LAK+CS++NK
Sbjct: 217 SASIDEAYLNITEYCTEKDISPADAVEQMRREVHERTNITVSAGIAANAKLAKICSNMNK 276
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQFVLPNDR +M F++ LP RK+ GIG+V E L ++ GI TC ++ L +F
Sbjct: 277 PNGQFVLPNDRTEIMNFMAKLPPRKVNGIGRVLERQLAEI-GIKTCADIYPYRQFLRQLF 335
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F ++V LGLG T P + RKS+ +E TF D L KL A+ L D
Sbjct: 336 GEKAYEFLINVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKD 395
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL LK+K ++EV TR V L + I ++D+ + A + L+ E+P + LR
Sbjct: 396 MKRAECKGRTLVLKVKLHTYEVFTRQVVLPRAICLADDLYRFALPILGKLEEEMPEMKLR 455
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 456 LMGLRCTHL 464
>gi|358390626|gb|EHK40031.1| hypothetical protein TRIATDRAFT_42536 [Trichoderma atroviride IMI
206040]
Length = 630
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E G+ E++R V E+ +T SAG+A N LAK+CS+INK
Sbjct: 203 SASIDEAYLNITEYCEEHGMDPATAVEQMRKEVQEKTSITVSAGIAANARLAKICSNINK 262
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP +R A+MTF+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F
Sbjct: 263 PNGQYVLPKERNAIMTFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYDQRQYLNRLF 321
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F L LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 322 GDKTFEFLLRCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPTKLRDKLRSTAEALEKD 381
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M+K +GRTL +K+K +FEV TR V L K I ++D+ ++ + L+ E+P + LR
Sbjct: 382 MKKAECKGRTLCIKIKLHTFEVYTRQVILPKSIDLADDLYNYSLPMLAKLEQEIPGMKLR 441
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 442 LMGLRCTNL 450
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 4 SLDEAYLDITEVCRER--------------------GISGIEIAEELRTSVYEEAGLTCS 43
SLDEAYLDIT+ ER G+ ++ +E+R + + LT S
Sbjct: 215 SLDEAYLDITQHLAERKNFDAEQKTFRTADGEQRMFGVDAEDVVQEIRFRIEVKTQLTAS 274
Query: 44 AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG 103
AG+APN +LAKVCSD NKPNGQ+++P +R AVM F+ LP+RK+ GIG+V+ +L G
Sbjct: 275 AGIAPNMMLAKVCSDFNKPNGQYLIPFNRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMG 333
Query: 104 INTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA 163
+ TC ++ +K LL ++S + ++FL V G+GST+ + RKS+S+ERTF+ A
Sbjct: 334 VVTCSDLFRKRGLLLKLYSAISFNYFLRVSAGVGSTSVQRGDDRKSMSTERTFAEINRPA 393
Query: 164 LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL-------QKYISSSE 216
L+ K E+ E L D++KE L+G+T+TLK+KT + VRT+A +L Q S++
Sbjct: 394 ELFAKCYELCEALVEDLKKENLKGKTITLKIKTIKYIVRTKAHSLLNATQDVQLLYSTAR 453
Query: 217 DILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 276
D+L+ L E P+ LRL+G+R++ + + S TQ T+ + +K+
Sbjct: 454 DLLRTEIRLCSPE-PLRLRLMGVRMSNLSP---ASKSSDTQITIHQMLKKSRGEQKLPFG 509
Query: 277 QNSLGSDINDDCLIDDKETSVSLDV--------------SETNNYEFGDPVCDNSLPDLN 322
G+D ++ K+ V D+ +E +N EF PVCD D
Sbjct: 510 AVVSGAD-RFLSFMEQKDPYVDEDLPGANAFPDEVPHTSTEKDNTEFICPVCDEHPEDCV 568
Query: 323 D 323
D
Sbjct: 569 D 569
>gi|340518175|gb|EGR48417.1| hypothetical protein TRIREDRAFT_107805 [Trichoderma reesei QM6a]
Length = 649
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 153/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + I + E++R V+E+ +T SAG+A N LAK+CS+INK
Sbjct: 219 SASIDEAYLNITEYCDQHDIDPAAVVEQMRIEVHEKTNITVSAGIAANARLAKICSNINK 278
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP DR A+M F+ LP RK+ G+G+V E L ++ G+ TC ++ ++ L +F
Sbjct: 279 PNGQYVLPRDRSAIMAFMRDLPTRKVNGVGRVLERELLEI-GVKTCGDIYEQRQYLHRLF 337
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T++F LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 338 GDKTSEFLFRCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPVQLRNKLRSTAEALEQD 397
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LR
Sbjct: 398 MRRSECKGRTLCIKIKLHTFEVFTRQVILPKSIYLAEDLYNYSLPMLAKLEHEMPGMKLR 457
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 458 LMGLRCTNL 466
>gi|358381543|gb|EHK19218.1| hypothetical protein TRIVIDRAFT_69218 [Trichoderma virens Gv29-8]
Length = 643
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 153/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E + + E++R V+E+ +T SAG+A N LAK+CS+INK
Sbjct: 217 SASIDEAYLNITEYCDEHNMDPAAVVEQMRKEVHEKTSITVSAGIAANARLAKICSNINK 276
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ ++ L +F
Sbjct: 277 PNGQYVLPRDRNSIMAFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYEQRQYLNRLF 335
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+ F L LGLG T P + RKS+ +E TF D A L KL AE L D
Sbjct: 336 GEKYSVFLLRCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPAKLRDKLRSTAEALEKD 395
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
++K +GRTL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LR
Sbjct: 396 LKKNECKGRTLCIKIKLHTFEVYTRQVVLPKSIHLAEDLYNYSLPMLAKLEQEMPGMRLR 455
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 456 LMGLRCTHL 464
>gi|378725578|gb|EHY52037.1| DNA polymerase kappa subunit [Exophiala dermatitidis NIH/UT8656]
Length = 732
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C I E+LR V+E+ +T SAG+APN LAK+CS+ NK
Sbjct: 227 SASIDEAYLNITEYCHTHDIDPDAAVEQLRGEVHEKCQITISAGIAPNAKLAKICSNKNK 286
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF LPNDR AVM+FIS+LP+RK+ G+G+V E L D GI TC ++ + L +F
Sbjct: 287 PNGQFRLPNDRAAVMSFISTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPHRAYLNRLF 345
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + +GLG T P + RKS+ +E TF K L KL AE L D
Sbjct: 346 GEKAFQFLMQTYMGLGRTVVQPAEEYERKSVGTESTFREMSGKQELREKLRHTAEELEKD 405
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ G++GRTL LK+K ++EV TR V + + +ED+ ++ + L+ ++P LR
Sbjct: 406 MERVGVKGRTLVLKVKLHTYEVFTRQVAPPRAVHRAEDLYTYSLPMLAKLEKDIPDFRLR 465
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 466 LMGLRCTHL 474
>gi|302908670|ref|XP_003049920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730856|gb|EEU44207.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 154/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C+E + E E++R+ V+E +T SAG+A N LAK+CS++NK
Sbjct: 224 SASIDEAYLNITEYCQEHQMDPAEAVEQMRSEVHERTNITVSAGIAANAKLAKICSNMNK 283
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP+DR +M F+ LP RK+ G+G+V E L ++ GI TC ++ + + +F
Sbjct: 284 PNGQYVLPSDRPTIMAFMRDLPTRKVNGVGRVLERELLEI-GIKTCGDLYAQRQFINPLF 342
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T++F LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 343 GDKTSEFLFKCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLRDKLRWTAEELEKD 402
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL LK+K +FEV TR V L + I ++D+ +A + L+ ++P + LR
Sbjct: 403 MKRAECKGRTLCLKVKLHTFEVFTRQVVLPRAIWLADDLYSYALPILSRLEQDMPGMKLR 462
Query: 236 LIGLRVTQF 244
L+GLR TQ
Sbjct: 463 LMGLRCTQL 471
>gi|268576074|ref|XP_002643017.1| C. briggsae CBR-POLK-1 protein [Caenorhabditis briggsae]
Length = 612
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 153/234 (65%), Gaps = 4/234 (1%)
Query: 18 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 77
E GI EI E+R V ++ GLTCSAG+A N +LAK+CSD NKPNGQ+VL NDR ++
Sbjct: 246 EFGIGREEIVREIRFRVEQKTGLTCSAGIAANFMLAKICSDFNKPNGQYVLENDREKILE 305
Query: 78 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 137
F+ LPIRK+GGIG+V+E L+ + I T +MLQK SL FS T + FL LGL
Sbjct: 306 FLRDLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLQKASLFPLCFSQLTQESFLRTALGLP 364
Query: 138 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKT 196
+ RKSIS ERTFS T D +L + +EI ML D++K G+ G+T+TLKLK
Sbjct: 365 GRPSSSDPRRKSISVERTFSPTADFKILLLEHSEICRMLEEDIRKSGVTGGKTITLKLKL 424
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDK 248
+SF+V TR++T + +++ EDI K + LL+ E +RL+G+R++Q F E+K
Sbjct: 425 SSFDVLTRSLTPSEAVTTLEDIQKFSLELLEKERGKEIRLLGVRLSQLVFEEEK 478
>gi|449683767|ref|XP_002159424.2| PREDICTED: DNA polymerase kappa-like [Hydra magnipapillata]
Length = 640
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 167/281 (59%), Gaps = 22/281 (7%)
Query: 1 MAASLDEAYLDITEVCRERG-ISGIE--------IAEELRTSVYEEAGLTCSAGVAPNRL 51
+ SLDEAYLD+T+ + +S + + EE+R+ V+E+ LTCSAG+APN +
Sbjct: 224 LQLSLDEAYLDLTDYIKNNAPVSEFQTEKDFVEIVVEEIRSKVFEKTKLTCSAGIAPNTM 283
Query: 52 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
L+K+CSD NKPNGQF L +D + F+ +LPIRKI GIG VTE IL+ F I TC ++
Sbjct: 284 LSKICSDFNKPNGQFYLKSDYQIISNFVKALPIRKIVGIGHVTEQILKS-FKILTCNDLY 342
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 171
+K ++L +FS ST F+ LG+ S Q+ RKS+S ERTF + L + +
Sbjct: 343 EKRNILYLLFSESTFMSFMQTALGISSNRLEQSE-RKSMSVERTFQDMSNIEDLLKVCKD 401
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+AE L+ D+ +E L GRT++LK K ++F + R+ T + IS++ED+ + LL E+
Sbjct: 402 VAENLANDLSREKLGGRTISLKYKLSTFVTKQRSKTFSELISNAEDLFTISKELLLNEIK 461
Query: 232 ------VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTS 266
LRL+G+RVT + K + QKT+ +F +
Sbjct: 462 NHKNGGFVLRLLGIRVTHLDNQK-----NFKQKTVDHFFNN 497
>gi|56160418|gb|AAV80823.1| polymerase kappa isoform 7 [Mus musculus]
Length = 495
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAE 229
EV+TRA T+ IS++E+I A LL+ +
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTD 494
>gi|452989492|gb|EME89247.1| hypothetical protein MYCFIDRAFT_213583 [Pseudocercospora fijiensis
CIRAD86]
Length = 663
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 8/259 (3%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E IS + ++R V+EE +T SAG+A N LAK+CS+ NK
Sbjct: 227 SASIDEAYLNITNYCEEHNISPEDAVSQMRAQVFEETMITISAGIAANAKLAKICSNKNK 286
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L ++R A+M F+ LP RK+ GIG+V E L D G+ TC ++ ++ L A+F
Sbjct: 287 PNGQFKLASERTAIMNFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYEQRHYLNALF 345
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F + V LGLG T+ P A + RKS+ +E TF D L KL + AE L D
Sbjct: 346 GDKTFEFLIGVHLGLGKTDVRPAAEYERKSVGTESTFHDMSDPKELRDKLRKTAEELEKD 405
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+Q+ +GRTL LK+K ++EV TR + K + +++D+ + +L+ E P + LR
Sbjct: 406 LQRTEFKGRTLCLKIKLHTYEVFTRQIQPPKAVHTADDLYHYGLAMLQKLEKEFPGMKLR 465
Query: 236 LIGLRVTQFNEDKVRAPSD 254
L+GLR T K + P+D
Sbjct: 466 LMGLRCTHLVSMK-KGPTD 483
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 152/258 (58%), Gaps = 6/258 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AA DE YL+IT C E + +E+R V++E LT SAG+APN++LAK+CSD N
Sbjct: 435 LAAGCDEGYLNITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKN 494
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF LP DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L +
Sbjct: 495 KPNGQFYLPFDRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLM 553
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEM 175
F L + LG+ S P R + I+S RTFS D+ + KL E+A
Sbjct: 554 DKQFGLQFLLRIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAE 613
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 235
L D ++ G G+T+TLK K +++V TRA + ++IS+ +D L L P+S+R
Sbjct: 614 LEDDTERNGWTGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDLLAIGKELLPSHPLSIR 673
Query: 236 LIGLRVTQFNEDKVRAPS 253
LIGLR+T+ + + +P+
Sbjct: 674 LIGLRITKLKDLRSSSPA 691
>gi|367047493|ref|XP_003654126.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
gi|347001389|gb|AEO67790.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
Length = 618
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 155/249 (62%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C E + ++ +LR ++++ +T SAG+A N LAK+CS++NK
Sbjct: 206 SASIDEAYLNITEYCAEHDMDPADVVSQLRREIHQKTHVTVSAGIAANARLAKICSNMNK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQFVLP +R A+M F+ LP RK+ G+G+V E L V GI TC ++ + L +F
Sbjct: 266 PNGQFVLPRERTAIMAFMRDLPCRKVNGVGRVLERELASV-GIKTCGDIYAQRQYLAQLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F L LGLG T+ P + RKS+ +E TF D L RKL + AE L AD
Sbjct: 325 GQKTYEFLLRCYLGLGRTHIQPADEYERKSVGTESTFREMSDPDQLRRKLRQTAEELEAD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR V K + ++D+ ++ + L+ E+P ++LR
Sbjct: 385 LRRAECKGRTLCLKVKLHTFEVLTRQVVPPKAVHLADDLYSYSLPMLAKLEQEIPGLTLR 444
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 445 LMGLRCTHL 453
>gi|346971729|gb|EGY15181.1| DNA polymerase kappa [Verticillium dahliae VdLs.17]
Length = 630
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 156/249 (62%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + IS + +++R ++E+ +T SAG+A N LAK+CS++NK
Sbjct: 196 SASIDEAYLNITEYCSAKAISPEDAVQQMRREIHEKTKITVSAGIAANAKLAKICSNMNK 255
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ++LP+DR ++M F++SLP RK+ G+G+V E L ++ G+ TC E+ + L +F
Sbjct: 256 PNGQYLLPSDRASIMKFMASLPPRKVNGVGRVLERQLAEI-GVTTCGEIYEYRQYLNQLF 314
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F + LGLG T P + RKS+ +E TF D L KL A+ L D
Sbjct: 315 GQKAYEFLIHCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPTQLTEKLRWTADELEKD 374
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M++ ++GRTL LK+K ++EV TR V K I ++D+ H+ + L+ E+P + LR
Sbjct: 375 MKRAEVKGRTLVLKIKLHTYEVFTRQVVTPKSICLADDLFSHSLPILIKLQQEMPDMKLR 434
Query: 236 LIGLRVTQF 244
L+GLR+T
Sbjct: 435 LMGLRMTHL 443
>gi|302681639|ref|XP_003030501.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
gi|300104192|gb|EFI95598.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
Length = 600
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 11/257 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS DE YL+IT+ CRE I E E+R V+EE+ LT SAG+APN++ +INKP
Sbjct: 189 ASCDEGYLNITKYCREHDIGPEECVAEMRRVVHEESDLTVSAGIAPNKV------NINKP 242
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF LP DR ++M+F+ L IRKI G+G+V E +L + GI TC ++ + + +
Sbjct: 243 NGQFYLPFDRSSIMSFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRATVYLMDK 301
Query: 123 HSTADFFLSVGLGLGSTNT--PQARFRKSISSER--TFSVTEDKALLYRKLAEIAEMLSA 178
H F L LG+ S P+ + RKSI +ER TF+ +K + KL E+A L
Sbjct: 302 HFGMRFLLQTYLGIASNTVRPPERQERKSIGAERRVTFNPISEKDKIMLKLDEVAAELED 361
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
DM+ G GRT+TLK K +++V TRA + ++I+S ED+ LL E P+ LRLIG
Sbjct: 362 DMRTSGWAGRTVTLKFKLDTYQVFTRAKSFDRWITSKEDLYAAGKELLAPEWPLILRLIG 421
Query: 239 LRVTQFNEDKVRAPSDP 255
LRVT+ + + P+ P
Sbjct: 422 LRVTKLKDLRAPEPTMP 438
>gi|390602278|gb|EIN11671.1| IMS-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 608
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 160/274 (58%), Gaps = 8/274 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AAS DE YL+IT C E + E +++R V+EE LT SAG+APN++LAK N
Sbjct: 201 LAASCDEGYLNITSYCAEHDLDPDECVQQMRKRVHEEIKLTVSAGIAPNKMLAK-----N 255
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+ LP +R + F+ LPIRKI GIG+V+E +L D G+ TC ++ + L +
Sbjct: 256 KPNGQYHLPFERTEIRDFMRDLPIRKIPGIGRVSERLL-DSIGVKTCGDIYPHRATLSLL 314
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
H + + L LG+ S P +R RKSI +ERTF+ ++ L +KL E+A L
Sbjct: 315 DKHFSLHWLLQTYLGIASNVVQPGSREERKSIGAERTFNPISNREKLLQKLDEVAHELEE 374
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
DM + G G+T+TLK K +S++V TRA + ++IS +D+ LL + P+ LRLIG
Sbjct: 375 DMTRGGWVGKTITLKYKLSSYQVFTRAKSFDRWISKKDDLFSARKELLLNDWPLELRLIG 434
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKK 272
LRVT+ + + D K +SG AS +
Sbjct: 435 LRVTKLKDLRAEEQGDAGIKRFLKPASSGPASPR 468
>gi|342878410|gb|EGU79753.1| hypothetical protein FOXB_09715 [Fusarium oxysporum Fo5176]
Length = 643
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C+E + E E++R V+E+ +T SAG+A N LAK+CS++NK
Sbjct: 226 SASIDEAYLNITEYCQEHQMDPAEAVEQMRREVHEKTNITVSAGIAANAKLAKICSNMNK 285
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VL +DR +M F+ LP RK+ GIG+V E L ++ GI TC + + L +F
Sbjct: 286 PNGQYVLSSDRPTIMAFMRDLPTRKVNGIGRVLERELLEI-GIKTCGDFYEHRQYLNPLF 344
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T++F + LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 345 GDKTSEFLFTCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRATAEELEQD 404
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL LK+K +FEV TR V L + I ++D+ +A + L+ E+P + LR
Sbjct: 405 MKRAECKGRTLCLKVKLHTFEVLTRQVVLPRAICLADDLYNYALPILTKLEQEIPGMKLR 464
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 465 LMGLRCTHL 473
>gi|451852315|gb|EMD65610.1| hypothetical protein COCSADRAFT_86898 [Cochliobolus sativus ND90Pr]
Length = 610
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 151/248 (60%), Gaps = 7/248 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS DEAYL++T+ C E ++G E ++R VYE+A +T SAG+A N LAK+CS+INKP
Sbjct: 203 ASCDEAYLNLTKYCNEHHMTGEEAVSQMRADVYEKAKITVSAGIAANAKLAKICSNINKP 262
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 263 NGQFLLPSDRQTIMEFMKTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRACLAKLFG 321
Query: 123 HSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
F + LGLG T +A RKS+ +E TF + L KL +AE L D+
Sbjct: 322 QKAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDL 381
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRL 236
++ +GRTL +K+K ++EV TR T + +ED+ K++ +L+ E+P + LRL
Sbjct: 382 KRTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRL 441
Query: 237 IGLRVTQF 244
+GLRVT
Sbjct: 442 MGLRVTHI 449
>gi|156046767|ref|XP_001589745.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980]
gi|154693862|gb|EDN93600.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 562
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 166/285 (58%), Gaps = 19/285 (6%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NK
Sbjct: 196 SASIDEAYLNITEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNKNK 255
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ +PNDR+ +M F+ LP RK+ GIG+V E L G++TC ++ L +F
Sbjct: 256 PNGQYRVPNDRIEIMRFMRDLPTRKVNGIGRVFEREL-GAIGVDTCGDIYNVRQYLPKLF 314
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T F + LGLG T+ A RKS+ +E TF +D L KL + AE L D
Sbjct: 315 GDKTFIFLMQCYLGLGRTDVKPAEEYTRKSVGTESTFGDMDDPTELRAKLRQTAEELEKD 374
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
MQ+ +GRTL LK+K ++EV TR K + S++D+ ++ + L+AE+P +SLR
Sbjct: 375 MQRTQFKGRTLVLKVKLKTYEVLTRQAAPSKAVCSADDLYTYSLPMLEKLEAEIPGMSLR 434
Query: 236 LIGLRVTQFNEDKVRAP----------SDPTQKTLTNFMTSGHAS 270
L+GLR T N ++ P DPT+ ++N+ + +S
Sbjct: 435 LMGLRCT--NLVSIKKPDTMAFFGFRKQDPTENGISNYESKSFSS 477
>gi|392593740|gb|EIW83065.1| IMS-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 642
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 152/248 (61%), Gaps = 4/248 (1%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AA DE YL+IT+ CRE +S +E+R +V +E LT SAG+APN++LAK+CSD K
Sbjct: 195 AAGCDEGYLNITKYCREHNLSPDACVQEIRETVQKETQLTVSAGIAPNKMLAKICSDKKK 254
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L + + F+ L IRK+ G+G+V E +L + GI+TC +++Q + L +
Sbjct: 255 PNGQFHLEFEPGVIKDFMKDLSIRKVPGVGRVNERLL-EAIGIHTCGDIIQHRAALYLMD 313
Query: 122 SHSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F L+ LG+ S P R RKSI +ERTFS D+ ++ KL ++ L D
Sbjct: 314 KQFGLNFLLNTHLGIASNVVQPITRDLRKSIGAERTFSPISDRYRIFAKLEDVCAELEKD 373
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIG 238
M G G+T+TLK K +F+V TRA + +++SS ED+ LL ELPV++RLIG
Sbjct: 374 MDSGGWTGKTVTLKFKLDTFQVFTRAKSFDRWVSSKKEDLFAIGKELLIPELPVTIRLIG 433
Query: 239 LRVTQFNE 246
LRVT+ +
Sbjct: 434 LRVTKLKD 441
>gi|330919708|ref|XP_003298724.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
gi|311327928|gb|EFQ93167.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
Length = 637
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS DEAYL++TE C+E ++ E ++R VYE+A +T SAG+A N LAK+CS+INK
Sbjct: 206 SASCDEAYLNLTEYCKEHHLTPEEAVSQMRAHVYEKAKITVSAGIAANAKLAKICSNINK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 266 PNGQFLLPSDRQTIMEFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLVKLF 324
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T +A RKSI +E TF + + KL IAE L D
Sbjct: 325 GQKAFQFLTQCYLGLGRTAIKRAEDYERKSIGTETTFKELQSPDAIRDKLRYIAEELEGD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LR
Sbjct: 385 LKRTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPNMKLR 444
Query: 236 LIGLRVTQF 244
LIGLRVT
Sbjct: 445 LIGLRVTHI 453
>gi|341895662|gb|EGT51597.1| CBN-POLK-1 protein [Caenorhabditis brenneri]
Length = 589
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 163/275 (59%), Gaps = 15/275 (5%)
Query: 8 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 67
AY D E G+ E+ E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFV
Sbjct: 240 AYFDDVEF----GVGREEVVREMRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFV 295
Query: 68 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 127
L NDR ++ F+ LPIRK+GGIG+V+E L+ + I T +ML + +L FS +
Sbjct: 296 LENDRNVILEFLEKLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLLQKALFPLCFSPLAQE 354
Query: 128 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG-LR 186
FL LGL + RKSIS ERTFS T D +L EI +ML D++K G +
Sbjct: 355 SFLRTALGLPGRPSSSDPRRKSISVERTFSPTSDFQMLCDVHLEICQMLEEDIRKAGVIG 414
Query: 187 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--F 244
G+T+TLKLK +SF+V TR++T +SS EDI K++ LL+ E +RL+G+R++Q F
Sbjct: 415 GKTITLKLKLSSFDVLTRSLTPSDTVSSLEDIQKYSLELLEKEKGKEIRLLGVRLSQLVF 474
Query: 245 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNS 279
E+K KT+T+F K + +++
Sbjct: 475 EEEK-------KSKTITDFWNDAKQQKPLSSPEDA 502
>gi|451997376|gb|EMD89841.1| hypothetical protein COCHEDRAFT_1177859 [Cochliobolus
heterostrophus C5]
Length = 606
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS DEAYL++TE C E ++ E ++R VYE+A +T SAG+A N LAK+CS+INK
Sbjct: 216 SASCDEAYLNLTEYCNEHRMTAEEAVRQMRADVYEKAKITVSAGIAANAKLAKICSNINK 275
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 276 PNGQFLLPSDRQTIMDFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLF 334
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T +A RKS+ +E TF + L KL +AE L D
Sbjct: 335 GQKAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGD 394
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL +K+K ++EV TR T + +ED+ K++ +L+ E+P + LR
Sbjct: 395 LKRTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLR 454
Query: 236 LIGLRVTQF 244
L+GLRVT
Sbjct: 455 LMGLRVTHI 463
>gi|322711916|gb|EFZ03489.1| DNA-directed polymerase kappa, putative [Metarhizium anisopliae
ARSEF 23]
Length = 621
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 155/249 (62%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C ++ + E+ E++R +Y++ +T SAG+A N LAK+CS++NK
Sbjct: 206 SASIDEAYLNITEYCHDKDATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNMNK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP+DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F
Sbjct: 266 PNGQYVLPSDRTSIMAFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDIYDQRKYLNMLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F + LGLG T P + RKSI +E TF D L KL AE L D
Sbjct: 325 GDKTFEFLIGCYLGLGRTKIQPAEEYERKSIGTESTFRELSDSVKLREKLRWTAEELEKD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL LK+K +FEV TR V + + I S++++ + + L+ E+P + LR
Sbjct: 385 MERAHCKGRTLCLKIKLHTFEVFTRQVVMPRAICSADELYNFSLPILTKLEQEIPAMKLR 444
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 445 LMGLRCTHL 453
>gi|405974456|gb|EKC39099.1| DNA polymerase kappa [Crassostrea gigas]
Length = 1422
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 174/313 (55%), Gaps = 37/313 (11%)
Query: 3 ASLDEAYLDITE---------------VCR-----ERGISGIEIAEELRTSVYEEAGLTC 42
SLDEAYLD T+ +CR ++ ++ E L SV E L
Sbjct: 783 VSLDEAYLDFTDHMTKRSGLSEKERTVICRNCDSFDKSFCLCDLNETLGLSVCENGTLKV 842
Query: 43 S------AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEH 96
G+APN +LAKVCSD+NKPNGQ+++P+ VM+FI LPIRKI GIGKV+E
Sbjct: 843 KDRPSDVCGIAPNMMLAKVCSDMNKPNGQYIIPSTVEDVMSFIRKLPIRKISGIGKVSER 902
Query: 97 ILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF 156
+L + + TC+++ K LL ++S + ++F+ + LG+GST + RKS+S+ERTF
Sbjct: 903 ML-NAVEVKTCQDLYDKRGLLYHLYSQISFNYFMRICLGIGSTTVERDGERKSMSTERTF 961
Query: 157 SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSE 216
S LY K E+ L+ D+Q E L+G+T+++K+KT F+V+TRA +L Y + +E
Sbjct: 962 SEMSAPTELYSKCLELCHSLAEDLQSEALKGKTVSIKIKTVKFDVKTRAFSLPDYTNDAE 1021
Query: 217 DILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 270
I A LL E+ P+ LRL+G+R++ D+ + Q TL F+ G
Sbjct: 1022 VIYIAAKDLLCKEMKNVHPHPLQLRLMGVRMSTLV-DQTLLSNKKQQNTLIQFVKKG--- 1077
Query: 271 KKIVGDQNSLGSD 283
+KI ++ G D
Sbjct: 1078 EKIGKNETHQGKD 1090
>gi|395333149|gb|EJF65527.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 669
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 154/252 (61%), Gaps = 5/252 (1%)
Query: 6 DEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNR-LLAKVCSDINKPNG 64
DE YL+IT C E G++ E +++R ++EE LT SAG+APN+ +LAK+CSD NKPNG
Sbjct: 201 DEGYLNITSYCEEHGMTPDECVQDMRQKIHEETALTASAGIAPNKKMLAKICSDRNKPNG 260
Query: 65 QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 124
QF L + A+ F+ L IRK+ G+G+V E +L + GI TC ++ + +L +
Sbjct: 261 QFKLDFEARAIKAFMRDLSIRKVPGVGRVNERLLESI-GIKTCGDIYAQRGILSLMDKQF 319
Query: 125 TADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
F L LG+ S Q +KSI +ERTF+ D A ++ KL E+A LS DM +
Sbjct: 320 GLMFLLQSYLGIASNVVEPWQREEKKSIGAERTFNTLSDTAKIHAKLEEVAAELSKDMTE 379
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRV 241
G+T+TLK K +F+V TRA +L K++S +E++ LLK ELP++LRLIGLRV
Sbjct: 380 GQWTGKTITLKYKLNTFQVCTRAKSLDKWLSGRAEELFTLGKELLKPELPLTLRLIGLRV 439
Query: 242 TQFNEDKVRAPS 253
T+ + K A S
Sbjct: 440 TKLKDLKAEAES 451
>gi|449546327|gb|EMD37296.1| hypothetical protein CERSUDRAFT_113946 [Ceriporiopsis subvermispora
B]
Length = 671
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 147/255 (57%), Gaps = 4/255 (1%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AA DE YL+IT C E I E E+R V+ E LT SAG+APN++LAK+CSD NK
Sbjct: 197 AAGCDEGYLNITPYCTEHNIVPEECVREMREVVHRETDLTVSAGIAPNKMLAKICSDKNK 256
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L A+ F+ L IRK+ G+G+V E +L + GI TC ++ +L +
Sbjct: 257 PNGQFKLEFQPQAIKAFMKDLSIRKVPGVGRVNERLLESI-GIKTCGDIYTHRGVLSLMD 315
Query: 122 SHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F L LG+ S Q RKSI +ERTFS + + KL E+A L AD
Sbjct: 316 KQFGLHFLLQTYLGIASNVVQPWQREERKSIGAERTFSTLWTQEDILNKLEEVAAELEAD 375
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIG 238
MQ +G G+T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ +RLIG
Sbjct: 376 MQGDGWSGKTITLKYKLDTYQVFTRAKSFDRWISTRKEDLFAIGKELLMPELPLRVRLIG 435
Query: 239 LRVTQFNEDKVRAPS 253
LRVT+ + K A S
Sbjct: 436 LRVTKLKDLKKEADS 450
>gi|189201936|ref|XP_001937304.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984403|gb|EDU49891.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 626
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS DEAYL++TE C+E ++ E ++R V+E+A +T SAG+A N LAKVCS+INK
Sbjct: 206 SASCDEAYLNLTEYCKEHHLTPEEAVSQMRADVFEKAKITVSAGIAANAKLAKVCSNINK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 266 PNGQFLLPSDRQTIMEFMRTLPTRKVNGIGRVFEREL-DAVGVKTCGDIYAHRACLAKLF 324
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T +A RKS+ +E TF + L KL IAE L D
Sbjct: 325 GQKAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALRGKLRYIAEELEGD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LR
Sbjct: 385 LKRTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPSMKLR 444
Query: 236 LIGLRVTQF 244
L+GLRVT
Sbjct: 445 LMGLRVTHI 453
>gi|149408451|ref|XP_001512578.1| PREDICTED: DNA polymerase kappa isoform 1 [Ornithorhynchus
anatinus]
Length = 873
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 290 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 349
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 350 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 408
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 409 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 468
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 469 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 527
Query: 253 SDPTQKTLTNFMTS 266
Q+++ +F+ S
Sbjct: 528 ----QRSIISFLQS 537
>gi|367032254|ref|XP_003665410.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
gi|347012681|gb|AEO60165.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
Length = 619
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + ++ +R ++E+ +T SAG+A N LAK+CS+INK
Sbjct: 209 SASIDEAYLNITEYCLRHDMDPADVVSHMRREIHEKTHITVSAGIAANARLAKICSNINK 268
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP DR A+M F+ LP RK+ GIG+V E L V GI TC ++ + L +F
Sbjct: 269 PNGQYVLPRDRTAIMDFMRDLPCRKVNGIGRVLERELGSV-GIKTCGDIYTQRQYLDRLF 327
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F L LGLG TN P + RKS+ +E TF D L KL AE L AD
Sbjct: 328 GQKTYEFLLRCYLGLGRTNIQPADEYERKSVGTESTFREMSDPVQLREKLRRTAEELEAD 387
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR V K + ++D+ K++ + L+ ++P + LR
Sbjct: 388 LKRAECKGRTLCLKVKLHTFEVLTRQVVPPKAVCLADDLYKYSLPMLAKLEQDIPGLKLR 447
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 448 LMGLRCTHL 456
>gi|345304664|ref|XP_003428244.1| PREDICTED: DNA polymerase kappa isoform 2 [Ornithorhynchus
anatinus]
Length = 882
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 299 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 358
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 359 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 417
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 418 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 477
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 252
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 478 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 536
Query: 253 SDPTQKTLTNFMTS 266
Q+++ +F+ S
Sbjct: 537 ----QRSIISFLQS 546
>gi|303283178|ref|XP_003060880.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457231|gb|EEH54530.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 424
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 153/244 (62%), Gaps = 8/244 (3%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
A SLDEAYL+I+ C + ++ ++AE LR V E+ LTCSAGVAP R LAKVCSD NK
Sbjct: 182 AGSLDEAYLEISAYCAGKSMTPADVAEALRREVREKTKLTCSAGVAPTRRLAKVCSDANK 241
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
P+GQ V+ R AV +SSLP+RKIGG+GKV + L FGI TC ++L++ +L+ A+F
Sbjct: 242 PDGQMVIEPTRDAVAALLSSLPVRKIGGVGKVLDRTL-AAFGIATCGDLLRERALVVALF 300
Query: 122 SHSTADFFLSVGLGLGSTNTP-----QARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176
S +DF L V +G+G P A RKS+S ERTF+ T D L K+A +AE +
Sbjct: 301 SEVQSDFLLGVAIGVGGEARPARPPGWAPQRKSLSQERTFAPTADARALAAKIAALAEEV 360
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SL 234
+A + +E L RT+TLK+K A FEV R +L + + ++ I A L + E SL
Sbjct: 361 AAGLARENLLTRTVTLKMKRADFEVAQRQTSLPRPTNDAQTISDAALRLFRGEKNTHGSL 420
Query: 235 RLIG 238
RL+G
Sbjct: 421 RLLG 424
>gi|156378469|ref|XP_001631165.1| predicted protein [Nematostella vectensis]
gi|156218200|gb|EDO39102.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 152/226 (67%), Gaps = 7/226 (3%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L DR +++F+ +LPI
Sbjct: 257 DVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEIVSFVKTLPI 316
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LGLG+T
Sbjct: 317 RKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALGLGATRLETD 375
Query: 145 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 204
R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLKT +FE++TR
Sbjct: 376 RGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLKTINFELKTR 435
Query: 205 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 244
+V+ ++ I+S ++++ A LL E+ P+ LRL+G+R++ F
Sbjct: 436 SVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGVRLSNF 481
>gi|392577344|gb|EIW70473.1| hypothetical protein TREMEDRAFT_68079 [Tremella mesenterica DSM
1558]
Length = 571
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 172/311 (55%), Gaps = 11/311 (3%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M ASLDE YL+IT E +S E+ +LR V + GLT SAG+A NR+LAK+CSD N
Sbjct: 185 MMASLDEGYLNITSYMAEHCMSATEVVTQLRGQVEAKTGLTISAGIASNRMLAKICSDQN 244
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF LP DR +++ F+ LP+RKI G G+VTE L + G+ TC ++ K + L A+
Sbjct: 245 KPNGQFELPFDRSSIVRFMRDLPVRKIPGFGRVTERCL-EGLGVETCGDIYTKRADLLAM 303
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
LG+ + RKS+ ERTF D + L EIAE L
Sbjct: 304 DHWFGFQGLCKAHLGIADNKVEPGKREERKSVGCERTFRDKTDNEDIMNTLTEIAEELGK 363
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
D+++ G+ +T+K K ++ +TRA T+ KYIS+S++IL A LL+ ELP+ +RL+G
Sbjct: 364 DLERLEYSGKCVTVKYKLHTYVNKTRAQTVGKYISTSKEILPIAQELLRKELPLRIRLLG 423
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVS 298
+R++ + + K + NF TS SK+ ++ +G ND+ I+
Sbjct: 424 IRLSTLKDLTI------PDKGIRNFFTS--PSKRKRSQEDEIGIIENDEPEIESGLEGSD 475
Query: 299 LDVSETNNYEF 309
+V E N +F
Sbjct: 476 GEVEELNEEDF 486
>gi|388582806|gb|EIM23110.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 499
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AASLDEAYL++T E G++ E++++LR V E GLT S G+APN+ LAK+CSD NK
Sbjct: 90 AASLDEAYLNVTSYMNEHGLTPEEVSQQLRKMVECETGLTVSTGIAPNKTLAKICSDKNK 149
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNG+F + + V++F+ LPIRK+ GIG++ E +++ + GI TC ++L L +
Sbjct: 150 PNGEFTMQFYKDTVVSFMKDLPIRKVPGIGRINERLVQSL-GIETCGDILNHKVELYLLR 208
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+D L LG+ S A+ RKS+ E+TF D +L KL + + L D
Sbjct: 209 KELQSDGLLRANLGIFSNTVAPAKKEDRKSVGIEKTFQPIFDTKVLMEKLKILCKELEGD 268
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 239
+++ GRT+TLK K +FE TR+ ++ K++S SE+I A LL+ ELP++LRL+G+
Sbjct: 269 LKRTQFEGRTVTLKYKKDTFENFTRSTSVHKFLSQSEEIWPVAKGLLERELPLTLRLMGV 328
Query: 240 RVTQF 244
R+T
Sbjct: 329 RLTNL 333
>gi|156345284|ref|XP_001621312.1| hypothetical protein NEMVEDRAFT_v1g231426 [Nematostella vectensis]
gi|156207107|gb|EDO29212.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 159/247 (64%), Gaps = 8/247 (3%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L DR +++F+ +LPI
Sbjct: 256 DVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEIVSFVKTLPI 315
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LGLG+T
Sbjct: 316 RKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALGLGATRLETD 374
Query: 145 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 204
R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLKT +FE++TR
Sbjct: 375 RGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLKTINFELKTR 434
Query: 205 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQK 258
+V+ ++ I+S ++++ A LL E+ P+ LRL+G + + + + S P ++
Sbjct: 435 SVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGYKAGK-RRSQGKVGSQPKKR 493
Query: 259 TLTNFMT 265
T+ F +
Sbjct: 494 TMETFWS 500
>gi|346322241|gb|EGX91840.1| DNA-directed polymerase kappa [Cordyceps militaris CM01]
Length = 641
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 150/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C +S E+ E+LR V+E+ +T SAG+A N LAK+CS++NK
Sbjct: 223 SASIDEAYLNITEYCVTHNMSAPEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNLNK 282
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VL +R +MTFI LP RKI GIG+V E L +V GI C ++ + L +F
Sbjct: 283 PNGQYVLGRERNEIMTFIRDLPTRKIPGIGRVLERELLEV-GIKNCGDIYEHRQYLHRLF 341
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F + LGLG T+ P + RKS+ +E TF D L KL AE L D
Sbjct: 342 GDKTFEFLMGCYLGLGRTSIQPAEEYERKSVGTESTFREISDPKKLREKLRATAEDLEGD 401
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M++ +GRTL LK+K +FEV TR V + + ++D+ + + L+ E+P + LR
Sbjct: 402 MKRAACKGRTLCLKIKLHTFEVYTRQVVTPRALCLADDLYNFSLPMLTKLEQEMPGMKLR 461
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 462 LMGLRCTHL 470
>gi|240977912|ref|XP_002402838.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
gi|215491234|gb|EEC00875.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
Length = 487
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 166/305 (54%), Gaps = 21/305 (6%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M LDEAYLDIT+ +I E+R ++E LT A +APN LAKVCSDI
Sbjct: 179 MPVGLDEAYLDITDHVNATDADPEDIVREMRKKIFEATQLT--ARIAPNMFLAKVCSDIR 236
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPN QF LPND AV F+ SLPIRK+ GIG V E +LR G TC ++ K + + +
Sbjct: 237 KPNNQFRLPNDINAVREFVRSLPIRKVPGIGAVQEQLLR-ALGAQTCHDLWVKRAAIGHL 295
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
F ++A F+L LGLG T KS S E TFS L K E+ E L +
Sbjct: 296 FGMTSARFYLRAALGLGCTEVKCDSACKSKSVEETFSELSSPEALVSKCEELCEQLCEQV 355
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-------PVS 233
+ +G+ GR +TLK+KT +F+V TR+VTL + E I K A LL+ E+ P+
Sbjct: 356 EDDGITGRVVTLKIKTVAFDVMTRSVTLDSATNRIEPIKKAALRLLRQEIAAAKPDCPLR 415
Query: 234 LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD----IN---D 286
LRL+G+R++ N+ A S +Q TL++F+ SG + +LGS +N D
Sbjct: 416 LRLMGVRLSGLNDG---ASSSASQPTLSSFL-SGRTATTCPVCGKTLGSSSSEFVNAHLD 471
Query: 287 DCLID 291
CL D
Sbjct: 472 SCLRD 476
>gi|308479872|ref|XP_003102144.1| CRE-POLK-1 protein [Caenorhabditis remanei]
gi|308262299|gb|EFP06252.1| CRE-POLK-1 protein [Caenorhabditis remanei]
Length = 604
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 171/288 (59%), Gaps = 19/288 (6%)
Query: 18 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 77
E G+ EI E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL NDR ++
Sbjct: 246 EFGVGREEIVREIRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLENDREKILK 305
Query: 78 FISSLPIRK-----IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 132
F+ LPIRK +GGIG+V+E L+ + I T +ML K +L FS + FL
Sbjct: 306 FLEKLPIRKVEEMTVGGIGRVSEAHLQSM-EIRTVGDMLLKKALFPLCFSPLAQESFLRT 364
Query: 133 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLT 191
LGL + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+T
Sbjct: 365 ALGLPGRPSSSDPRRKSISVERTFSPTSDFKILIAEHTEICRMLEEDIRKSGVTGGKTIT 424
Query: 192 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKV 249
LKLK +SF+V TR++T + ++S +DI K++ LL+ E +RL+G+R++Q F E+K
Sbjct: 425 LKLKLSSFDVLTRSLTPSEVVTSLDDIQKYSMELLERERGKEIRLLGVRLSQLVFEEEK- 483
Query: 250 RAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSV 297
KT+ +F + K+ + ++ + SD ND ++D + +
Sbjct: 484 ------KSKTIADFW---NEKKQQMASEDVMSSDDNDIIMMDTRPCPI 522
>gi|70982554|ref|XP_746805.1| DNA-directed polymerase kappa [Aspergillus fumigatus Af293]
gi|66844429|gb|EAL84767.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
Af293]
gi|159122955|gb|EDP48075.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
A1163]
Length = 614
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 160/280 (57%), Gaps = 16/280 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E +R + E ++ SAG+A N +AK+CS+ NK
Sbjct: 205 SASIDEAYLNITSYCTENNLDPEEAVSRMRAEILETTKISVSAGIAANAKVAKICSNRNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ +LP+RK+ G+G+V E L D GI TC ++ + +LL +F
Sbjct: 265 PNGQFRVPNEREAIMEFMRTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +ERTFS DK LL KL + A+ L D
Sbjct: 324 GEKAFHFLMQCFLGLGRTQIQPVENYERKSVGTERTFSEIGDKQLLREKLWDTAQELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R + +S ++D+ + + L+ E+P + LR
Sbjct: 384 LARAECKGRTLVLKVKLATFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLR 443
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 275
L+GLR T T+K NF + S+ + G
Sbjct: 444 LLGLRCTNLVS---------TKKVDINFFGAASQSRSVAG 474
>gi|402086039|gb|EJT80937.1| DNA polymerase kappa [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 624
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 150/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + G+ ++ +++R V+ +T SAG+A N LAK+CS++NK
Sbjct: 202 SASIDEAYLNITQYCADHGMGPADVVQQMRAEVHRRTSITVSAGIAANAKLAKICSNMNK 261
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQFVLPN+R A+M F+ SLP RK+ GIG+V E L + G+ TC ++ + L +F
Sbjct: 262 PNGQFVLPNERPAIMEFMGSLPCRKVNGIGRVLERELAAI-GVVTCGDVYPERKYLTKLF 320
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +E TFS L K+ A L D
Sbjct: 321 GEKAFRFLVDCYLGLGRTIIRPAEEYERKSVGTESTFSDISGGQKLREKMRWTAGELEKD 380
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M+K RGRTL LK+K A+FEV TR V L + I ++D+ K A + L+ E P ++ R
Sbjct: 381 MKKAECRGRTLVLKVKLATFEVLTRQVILPRSIQLADDLYKFALPMLAKLEKEFPRLTCR 440
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 441 LLGLRCTNL 449
>gi|403161534|ref|XP_003321856.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171309|gb|EFP77437.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 562
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 166/291 (57%), Gaps = 29/291 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDE ++++T CR+ +S E +R V ++ GLT SAG+ PN +AK+ +D+NKPN
Sbjct: 148 SLDECFMNLTAYCRDHDLSAAEATSRMRQHVLKDTGLTVSAGIGPNVTIAKIAADLNKPN 207
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQF P R M F+ LP+RK+ GIG+VTE L +V G+ C ++ ++ S L + S
Sbjct: 208 GQFECPPTRDDAMKFMKDLPVRKVPGIGRVTERWL-EVLGVKKCGDIWEQRSKLLLMKSE 266
Query: 124 STADFFLSVGLGLGSTN--TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ D LGLG T+ Q R+S+ E +F K ++KL E++E L+ D+
Sbjct: 267 VSFDLLSRAYLGLGQTDIKPSQREDRQSVGCETSFKSLSKKEDFFQKLKELSEELAGDLS 326
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTL----QKYISSSEDILKHASVLLKAELP------ 231
+ GRTLTLK+K +FEV +R+VT Q+++SS+ED+ KHA +LL+ E+
Sbjct: 327 RLQFAGRTLTLKIKLDTFEVLSRSVTPAILGQRFLSSAEDLYKHAKLLLEREIESRHSSF 386
Query: 232 --------------VSLRLIGLRVTQFNEDKVRAPSDPT--QKTLTNFMTS 266
+S+RL+G++V+ + K R P++ QK ++N TS
Sbjct: 387 DQGKKVPGCNGARDISIRLLGIKVSHLQDQKNRIPANENSLQKWISNPTTS 437
>gi|396470133|ref|XP_003838570.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
gi|312215138|emb|CBX95091.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
Length = 646
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 158/273 (57%), Gaps = 16/273 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS DEAYL++T+ C+E +S ++ +LR V+E A +T SAG+A N LAK+ S+ NK
Sbjct: 222 SASCDEAYLNLTQYCKEHHMSPEDVVSQLRADVFERAKITVSAGIAANAKLAKIGSNKNK 281
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF LP+DR +M F+ ++P RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 282 PNGQFYLPSDRQTIMDFMKTMPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLF 340
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T +A RKS+ +E TF + L KL +AE L D
Sbjct: 341 GQKAFQFLMQCYLGLGRTKIQRADESHRKSVGTETTFRELQSPDDLRGKLRHVAEELEGD 400
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL +K+K ++EV TR +T + ++D+ K++ +L+ +E+P + LR
Sbjct: 401 LKRTEYKGRTLCIKIKLHTYEVHTRQITPPFAVHKADDLYKYSLPMLEKFMSEIPNMKLR 460
Query: 236 LIGLRVTQFNEDK---------VRAPSDPTQKT 259
L+GLRVT K +R P+ P T
Sbjct: 461 LMGLRVTHIISTKKPGIDFFGRIRPPTAPKPST 493
>gi|392570399|gb|EIW63572.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 638
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 158/274 (57%), Gaps = 15/274 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AA DE YL+IT C E +S E ++R+ V EE LT SAG+APN+ NK
Sbjct: 197 AAGCDEGYLNITNYCEEHSLSPEECVSQMRSVVQEETMLTVSAGIAPNK---------NK 247
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L D AV F+ L IRK+ G+G+V E +L D G+ TC ++ + ++L +
Sbjct: 248 PNGQFKLDFDPDAVKKFMYDLSIRKVPGVGRVHERLL-DSIGVKTCGDVYEHRAVLFLLD 306
Query: 122 SHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
H +F L LG+ S Q RKSI +ERTF+ D A +Y KL E+A L AD
Sbjct: 307 KHFGLEFLLQAYLGIASNVVQPGQREERKSIGAERTFNALSDTAKIYAKLEEVAAELEAD 366
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIG 238
M++ G G+T+TLK K +F+V TRA + ++IS+ ED+ LLK ELP++LRLIG
Sbjct: 367 MEESGWTGKTITLKYKLDTFQVFTRAKSFDRWISTKKEDLFAIGQELLKPELPLTLRLIG 426
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKK 272
LRVT+ + ++A + + + F + +S K
Sbjct: 427 LRVTKLKD--LKAEVESKARGIKRFFEAAPSSPK 458
>gi|345560473|gb|EGX43598.1| hypothetical protein AOL_s00215g334 [Arthrobotrys oligospora ATCC
24927]
Length = 699
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 147/253 (58%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS DEAYL+IT + E E++R V+E + LT SAG+APN +AK+CS+ NK
Sbjct: 254 AASCDEAYLNITPYLERHKLDPEEAVEKMRQEVFERSKLTVSAGIAPNARIAKICSNKNK 313
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF + NDR AVM+F+ SLP+RK+ G+G+V E L V GI TC ++ L+ +F
Sbjct: 314 PNGQFRVGNDRSAVMSFMKSLPVRKVNGVGRVFERELEAV-GIKTCGDIYPMRGLILKLF 372
Query: 122 SHSTADFFLSVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F +SV LGLG T + RKSI SE TF E A L KL + AE L D
Sbjct: 373 GQKAYEFLISVFLGLGRTVIRPAEEYIRKSIGSESTFPDLEGTANLREKLRKTAEALEED 432
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
+ K L+GRTL LK+K ++E R L I + D+ +A LL + P+ LR
Sbjct: 433 LTKTELQGRTLALKVKMFTYEEAIRQKPLPYPIWKAGDVYDYALPLLTKLEEEYKPMKLR 492
Query: 236 LIGLRVTQFNEDK 248
L+GLR+T + K
Sbjct: 493 LMGLRMTNLSSRK 505
>gi|119488628|ref|XP_001262764.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
gi|119410922|gb|EAW20867.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
Length = 614
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 160/280 (57%), Gaps = 16/280 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E +R + E ++ SAG+A N +AK+CS+ NK
Sbjct: 205 SASIDEAYLNITSYCTENNLDPEEAVSRMRAEILETTKISVSAGIAANAKIAKICSNRNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ +LP+RK+ G+G+V E L D GI TC ++ + +LL +F
Sbjct: 265 PNGQFRVPNEREAIMEFMRTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +ERTF+ DK LL KL + A+ L D
Sbjct: 324 GEKAFHFLIQCFLGLGRTQVQPVENYERKSVGTERTFNEIGDKQLLREKLWDTAQELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R + +S ++D+ + + L+ E+P + LR
Sbjct: 384 LARTECKGRTLVLKVKLATFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLR 443
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 275
L+GLR T T+K NF + S+ + G
Sbjct: 444 LLGLRCTNLVS---------TKKVDINFFGAASQSRSVAG 474
>gi|407922246|gb|EKG15350.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 486
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 147/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C + + ++ +++R V+E+ +T SAG+A N LAK+CS+ NK
Sbjct: 43 SASIDEAYLNITAYCEDHHMDPEDVVQQMRREVHEKTNITVSAGIAANAKLAKICSNKNK 102
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L NDR +M F+ LP RKI GIG+V E L D G+ TC ++ + + L +F
Sbjct: 103 PNGQFRLANDRATIMAFMRDLPTRKINGIGRVFEREL-DAIGVKTCGDIYEHRAYLPQLF 161
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +E TF DK L KL AE L D
Sbjct: 162 GEKAFQFLMQCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDKDDLRAKLWHTAEELEKD 221
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K ++EV TR V I ED+ K++ + L+ E+P + LR
Sbjct: 222 LERTQFKGRTLVLKVKLHTYEVLTRQVAPPFAIHKKEDLYKYSLPILAKLEKEIPGLKLR 281
Query: 236 LIGLRVTQF 244
L+GLRVT
Sbjct: 282 LMGLRVTHL 290
>gi|320589524|gb|EFX01985.1| DNA-directed polymerase [Grosmannia clavigera kw1407]
Length = 600
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 152/253 (60%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL++TE C G E+ +LR V EE +T SAG+A N LAK+CS+INK
Sbjct: 172 SASIDEAYLNVTEYCATHGADPGEVVAQLRREVLEETRVTVSAGIAANTRLAKICSNINK 231
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF+L N+R A++ F +L RK+ GIG+V E L V GI TC ++ + + +F
Sbjct: 232 PNGQFLLQNERSAILDFTKTLACRKVNGIGRVFERELASV-GIQTCGDIYDQRQYISRLF 290
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T+ P + RKS+ +E TF+ D L ++L A L D
Sbjct: 291 GEKACHFLVHSYLGLGRTSVQPAEEYERKSVGTESTFTSMSDPGKLRQQLQWTAHELEKD 350
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLR 235
+++ +GRTL LKLK +FEV TR V L + + ++D+ K+AS +L + ELP +S+R
Sbjct: 351 LRRVECKGRTLVLKLKLNTFEVHTRQVILSRAVYLADDLYKYASPMLSKMEQELPGISVR 410
Query: 236 LIGLRVTQFNEDK 248
L+GLR T +
Sbjct: 411 LLGLRCTNLTSTR 423
>gi|308805837|ref|XP_003080230.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
gi|116058690|emb|CAL54397.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
Length = 605
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 164/273 (60%), Gaps = 14/273 (5%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDI 59
+A SLDEAY+++TE C+E + IA E+R V GLTCS G A +R LAKVCSD
Sbjct: 257 IAGSLDEAYIEVTEYCKEHDTTMEAIAAEIREKVKAATGGLTCSVGGACSRRLAKVCSDF 316
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
NKP+GQ++L R A +TF+ LP+RK+ GIGK E +L + F I TC ++L K +L+ A
Sbjct: 317 NKPDGQYILEPSREAALTFLRDLPVRKMYGIGKTLERVLNE-FDIETCGDLLDKRALMLA 375
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR-----FRKSISSERTFSVTEDKALLYRKLAEIAE 174
+F+ + + + + LG+G+ P+ RK +S TF+ T DK L K+ E+A
Sbjct: 376 LFTPKSFEHLIGIALGVGTERHPREEPDGIAPRKGVSKSETFAATSDKTFLDAKMTEMAT 435
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE----L 230
M++ + Q+ L+GR + +KLK ++F+V R TL + + I+ A L++ E +
Sbjct: 436 MVALECQRLNLKGRMVAVKLKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGV 495
Query: 231 PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 263
++LRL+G RV+QF+ ++ P D QK + +
Sbjct: 496 DMTLRLVGARVSQFDHEEA-VPED--QKRIDTY 525
>gi|171680875|ref|XP_001905382.1| hypothetical protein [Podospora anserina S mat+]
gi|27764332|emb|CAD60612.1| unnamed protein product [Podospora anserina]
gi|170940065|emb|CAP65292.1| unnamed protein product [Podospora anserina S mat+]
Length = 641
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 155/249 (62%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + G+ ++ ++R ++E+ +T SAG+A N LAK+CS++NK
Sbjct: 222 SASIDEAYLNITQYCIDHGMDAADVVSQMRREIHEKTHITVSAGIAANARLAKICSNMNK 281
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP DR+ +M F+ +L R++ GIG+V E L GI+TC ++ + + +F
Sbjct: 282 PNGQYVLPRDRVVIMEFMRNLSCRQVNGIGRVLEREL-GTIGISTCGDIYTQRQFIEKLF 340
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F L LGLG T+ P + RKS+ +ERTF ++ L +L IAE L D
Sbjct: 341 GEKTYNFLLRCYLGLGRTSIQPAEEYERKSVGTERTFRDMDNPTQLREQLRRIAEELEKD 400
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M++ +GRTL +K+K ++EV TR + K + ++D+ +A V L+ E+P + LR
Sbjct: 401 MRRAECKGRTLCIKVKLHTYEVLTRQIAPPKAVYLADDLYDYALPMLVKLEQEVPNIKLR 460
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 461 LLGLRCTHL 469
>gi|389740094|gb|EIM81286.1| IMS-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 704
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 165/272 (60%), Gaps = 6/272 (2%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AAS+DE YL+ITE CR+ GI E ++R V +E LT SAG+A N++ +CSD N
Sbjct: 176 LAASVDEGYLNITEYCRDHGIDPEECVRQMRQQVVDETTLTVSAGIAANKV---ICSDKN 232
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF LP++ A++ F+ L IRKI G+G+V E +L + GI TC ++ ++L +
Sbjct: 233 KPNGQFRLPHEPQAIIEFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRAVLSLM 291
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
H F L LG+ S P R RKSI SERTF+ DK + +KL E+A L
Sbjct: 292 DKHFGLVFMLRTHLGIASNVVQPWEREERKSIGSERTFNTLGDKDKILQKLDEVATELEE 351
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
DM++ G GRT+TLK K +++V TRA + ++I+ +D+ LL ELP+ LRLIG
Sbjct: 352 DMERGGWTGRTVTLKYKLDTYQVFTRAKSFNRWITKKDDLFATGRDLLLPELPLKLRLIG 411
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 270
LRVT+ + K + P+ ++ + TSG +S
Sbjct: 412 LRVTKLKDLKKKEPATGIKRFFESAGTSGPSS 443
>gi|46109048|ref|XP_381582.1| hypothetical protein FG01406.1 [Gibberella zeae PH-1]
Length = 639
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 153/253 (60%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NK
Sbjct: 224 SASIDEAYLNITEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNK 283
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VL +DR ++ F+ L R + GIG+V E L ++ GI TC ++ + L +F
Sbjct: 284 PNGQYVLSSDRPTILAFMRDLSTRSVNGIGRVLERELLEI-GIKTCGDLYEHRQYLNPLF 342
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T++F + LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 343 GEKTSEFLFTCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQD 402
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAE--LP-VSLR 235
M++ +GRTL LK+K +FEV TR L + I ++D+ +A +L K E +P + LR
Sbjct: 403 MKRAECKGRTLCLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLR 462
Query: 236 LIGLRVTQFNEDK 248
L+GLR T + K
Sbjct: 463 LMGLRCTHLVKTK 475
>gi|322700161|gb|EFY91917.1| DNA polymerase kappa [Metarhizium acridum CQMa 102]
Length = 501
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 6/237 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C ++ + E+ E++R +Y++ +T SAG+A N LAK+CS+INK
Sbjct: 206 SASIDEAYLNITEYCHDKHATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNINK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP+DR ++MTF+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F
Sbjct: 266 PNGQYVLPSDRTSIMTFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDIYEHRKYLNLLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F +S LGLG T P + RKSI +E TF D L KL AE L D
Sbjct: 325 GDKTFEFLISCYLGLGRTRIQPAEEYERKSIGTESTFRELSDPGNLREKLRWTAEELEKD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVS 233
M++ +GRTL LK+K +FEV TR + + I S++++ + + L+ E+P S
Sbjct: 385 MERVHCKGRTLCLKIKLHTFEVLTRQAVMPRAICSADELYNFSLPILTKLEQEMPES 441
>gi|449298338|gb|EMC94353.1| hypothetical protein BAUCODRAFT_111160 [Baudoinia compniacensis
UAMH 10762]
Length = 628
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C++ + E ++R V+E A +T SAG+A N LAK+CS+ NK
Sbjct: 214 SASIDEAYLNITQYCQDHDMDPEEAVAQMRAQVFEHAKITISAGIAANAKLAKICSNKNK 273
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ LP++R +++ F+ LP RK+ GIG+V E L D GI TC ++ ++ L +F
Sbjct: 274 PNGQYRLPSERTSILIFMRDLPTRKVNGIGRVFEREL-DAIGIKTCGDIYEQRHYLSRLF 332
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F +SV LGLG T+ P + RKS+ +E TF D L KL AE L D
Sbjct: 333 GDKAFEFLMSVYLGLGRTDVRPVEEYERKSVGTESTFHDISDPKELRDKLRWTAEELEKD 392
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL LKLK ++EV +R V K + +++D+ + +L+ E+P + LR
Sbjct: 393 LKRTEFKGRTLVLKLKLHTYEVFSRQVQPPKAVYTADDLYHFSLPMLQKVEKEMPGMKLR 452
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 453 LMGLRCTHL 461
>gi|321460481|gb|EFX71523.1| hypothetical protein DAPPUDRAFT_31218 [Daphnia pulex]
Length = 429
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 146/237 (61%), Gaps = 9/237 (3%)
Query: 2 AASLDEAYLDITEVCRERGISGIEI-----AEELRTSVYEEAGLTCSAGVAPNRLLAKVC 56
AASLDEAYLD+T+ R SG E+ EE+R + E LT SAG+APN +LAKVC
Sbjct: 192 AASLDEAYLDLTDFLCARKESGAEMTASEAVEEMRAKILESTQLTASAGIAPNGMLAKVC 251
Query: 57 SDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL 116
SD NKPNGQF+L N + AV FI LPIRKI GIG VTE +L + GI+TC ++ + L
Sbjct: 252 SDKNKPNGQFILGNSKEAVDEFIKDLPIRKISGIGNVTEQLLGSL-GISTCRDLWNQREL 310
Query: 117 LCAVFSHSTADFFLSVGLGLGSTNTPQA---RFRKSISSERTFSVTEDKALLYRKLAEIA 173
L +FS S+ D+FL V LG+GS R RKS+S E TF T D+ L + +++
Sbjct: 311 LYLLFSESSYDYFLRVALGIGSGGGGGDGSERERKSVSCETTFRSTSDRNELCDIIRQLS 370
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
L+ D+++ G GR++TLK KT F+V+TR L Y E + K A+ LL + L
Sbjct: 371 ADLARDLERHGRLGRSVTLKYKTDKFDVKTRITQLTGYTGDGEVMAKAATSLLPSGL 427
>gi|297805920|ref|XP_002870844.1| hypothetical protein ARALYDRAFT_356151 [Arabidopsis lyrata subsp.
lyrata]
gi|297316680|gb|EFH47103.1| hypothetical protein ARALYDRAFT_356151 [Arabidopsis lyrata subsp.
lyrata]
Length = 592
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 154/260 (59%), Gaps = 43/260 (16%)
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 229
+EIAEMLS DM+KEGL RTLTLKLKT SFE+R+RAV+LQ+Y SS+DILKH + LLKAE
Sbjct: 133 SEIAEMLSHDMKKEGLTARTLTLKLKTTSFEIRSRAVSLQRYTCSSDDILKHGAKLLKAE 192
Query: 230 LPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 289
LPVS+ LIGLR++QF ++R SDP+Q T+T F+ +S++ + D ND
Sbjct: 193 LPVSVLLIGLRMSQF-VGEIRN-SDPSQGTITKFIVQKDSSRQDLDD--------NDSFD 242
Query: 290 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEG 349
+D K + + +S + ++ C + + E Q+LEG
Sbjct: 243 LDAKRSQI------------------DSEKVIPNQEC-----------VEKEERPQVLEG 273
Query: 350 NSLVLRQEEGSCCDGVEEV--DKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSF 407
+ L+ + +E C + D + + + Q + W+D YKC LCG E+PPSF
Sbjct: 274 DVLLKKHKE--CKPDTNHLMNDSYKVQNTEAVSVFPQMEPLHWVDGYKCVLCGIELPPSF 331
Query: 408 IEERQEHSDFHLAERLQKEE 427
+EERQEHSDFHLA+RLQ EE
Sbjct: 332 VEERQEHSDFHLAQRLQNEE 351
>gi|225556402|gb|EEH04691.1| DNA polymerase kappa [Ajellomyces capsulatus G186AR]
Length = 604
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 180/359 (50%), Gaps = 44/359 (12%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C I + LR+ V E+ +T SAG+APN +AK+CS+ NK
Sbjct: 200 SASIDEAYLNITAYCATNEIEPEVVVCRLRSQVMEQTRVTVSAGIAPNARIAKICSNWNK 259
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PNDR +M F+S +P+RKI G+G+V E L + G+ C ++ ++ +F
Sbjct: 260 PNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLF 318
Query: 122 SHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLGST + RKS+ +ERTF D A L L A L D
Sbjct: 319 GEKCYRFLMQCYLGLGSTKIRPVEESERKSVGTERTFRDIGDMADLQEMLQLTALELEKD 378
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS---VLLKAELP-VSLR 235
M + RGRTLTLK+K +FEV +R V L K + S+DI +A + L+ E+P + +R
Sbjct: 379 MLRTQFRGRTLTLKVKLHTFEVLSRQVVLPKAVCLSDDIYDYAFPMLIRLRKEMPNMKIR 438
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASK------KIVGDQNSLGS------D 283
L+GLR T N +R P NF + S VG+ + G +
Sbjct: 439 LMGLRCT--NLSSMRKPD-------INFFGGTYTSSVRPQSHSFVGNASCFGEEEFGVLN 489
Query: 284 IND--DCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE 340
I D D L D T D S P+ D + N+I+E+++I E
Sbjct: 490 IEDTHDRLRDSDATRRDWDTSHR--------------PNGTDTDSPIPNQINELDRIPE 534
>gi|440470492|gb|ELQ39560.1| DNA polymerase kappa [Magnaporthe oryzae Y34]
gi|440487264|gb|ELQ67065.1| DNA polymerase kappa [Magnaporthe oryzae P131]
Length = 873
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + + E E++R V+ +T S+GVA N LAK+C +INK
Sbjct: 449 SASIDEAYLNITQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINK 508
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP++R A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F
Sbjct: 509 PNGQYVLPSERPAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLF 567
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG TN P + RKS+ +E TF+ + L +KL AE L D
Sbjct: 568 GEKAFKFLVDCYLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKD 627
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
M++ ++GRTL +K+K +FEV TR V L + I +ED+ ++ +L K + S R
Sbjct: 628 MKRAEVKGRTLVIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCR 687
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 688 LMGLRCTNL 696
>gi|400601997|gb|EJP69622.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 638
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C G+ E+ E+LR V+E+ +T SAG+A N LAK+CS+ NK
Sbjct: 223 SASIDEAYLNITEYCVAHGMGPAEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNFNK 282
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VL ++R ++ F+ LP RKI GIG+V E L ++ GI C ++ + L +F
Sbjct: 283 PNGQYVLSHERNEIVAFMRDLPTRKIPGIGRVLERELLEI-GIKNCGDIYEHRQYLHRLF 341
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F + LGLG T P + RKS+ +E TF L KL AE L D
Sbjct: 342 GDKTFEFLIGCYLGLGRTKIQPAEEYERKSVGTESTFREMSHPTALREKLRATAEDLEGD 401
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR V + + ++D+ +A + L+ E+P + LR
Sbjct: 402 LKRAECKGRTLCLKIKLHTFEVYTRQVVPPRAVHLADDLYNYALPMLAKLEQEMPGMKLR 461
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 462 LMGLRCTHL 470
>gi|389635609|ref|XP_003715457.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
gi|351647790|gb|EHA55650.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
Length = 634
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + + E E++R V+ +T S+GVA N LAK+C +INK
Sbjct: 210 SASIDEAYLNITQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP++R A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F
Sbjct: 270 PNGQYVLPSERPAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG TN P + RKS+ +E TF+ + L +KL AE L D
Sbjct: 329 GEKAFKFLVDCYLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
M++ ++GRTL +K+K +FEV TR V L + I +ED+ ++ +L K + S R
Sbjct: 389 MKRAEVKGRTLVIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCR 448
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 449 LMGLRCTNL 457
>gi|121709435|ref|XP_001272419.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
gi|119400568|gb|EAW10993.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
Length = 600
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 157/281 (55%), Gaps = 16/281 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E +R V E+ + SAG+A N +AK+ S+ NK
Sbjct: 205 SASIDEAYLNITSYCNENNLDPEEAVSRMRAEVLEKTKIFVSAGIAANAKIAKISSNRNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PNDR AVM F+ LP+RK+ G+G+V E L D GI +C ++ + + L +F
Sbjct: 265 PNGQFRVPNDRDAVMEFMKELPVRKVNGVGRVFEREL-DAIGIKSCGDIWPQRAYLTRLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P ++ RKS+ +ERTF+ DK LL KL + A+ L D
Sbjct: 324 GEKAFQFLIQCYLGLGRTQIQPVEKYERKSVGTERTFNELGDKQLLRGKLWDTAQELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K ASFEV +R + +S ++D+ A + L+ E+P + LR
Sbjct: 384 LARNECKGRTLVLKVKLASFEVLSRQCQPPRALSLAKDLHSFALPMLAKLEREIPNMKLR 443
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 276
L+GLR T T+K NF K + GD
Sbjct: 444 LLGLRCTNLVS---------TKKVEVNFFGPPLRPKSLSGD 475
>gi|240276616|gb|EER40127.1| DNA polymerase kappa [Ajellomyces capsulatus H143]
gi|325095340|gb|EGC48650.1| DNA polymerase kappa [Ajellomyces capsulatus H88]
Length = 604
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 146/253 (57%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C I LR+ V E+ +T SAG+APN +AK+CS+ NK
Sbjct: 200 SASIDEAYLNITAYCATNEIEPEVAVRRLRSQVMEQTKVTVSAGIAPNARIAKICSNWNK 259
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PNDR +M F+S +P+RKI G+G+V E L + G+ C ++ ++ +F
Sbjct: 260 PNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLF 318
Query: 122 SHSTADFFLSVGLGLGSTN--TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLGST + RKS+++ERTF D A L L A L D
Sbjct: 319 GEKCYRFLMQCYLGLGSTKIRPVEESERKSVATERTFRDIGDMADLQEMLQLTALELEKD 378
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M + RGRTLTLK+K +FEV +R V L K + S+DI +A + L+ E+P + +R
Sbjct: 379 MLRTQFRGRTLTLKVKLHTFEVLSRQVVLPKAVCLSDDIYHYALPMLIRLRKEMPNMKIR 438
Query: 236 LIGLRVTQFNEDK 248
L+GLR T + K
Sbjct: 439 LMGLRCTNLSSMK 451
>gi|193205700|ref|NP_001122692.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
gi|374095490|sp|P34409.3|POLK_CAEEL RecName: Full=DNA polymerase kappa
gi|373253818|emb|CCD62142.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
Length = 596
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 160/269 (59%), Gaps = 14/269 (5%)
Query: 18 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 77
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M
Sbjct: 247 EFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIME 306
Query: 78 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 137
F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LGL
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLP 365
Query: 138 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKT 196
+ RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK
Sbjct: 366 GRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKL 425
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSD 254
+SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 426 SSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR--- 482
Query: 255 PTQKTLTNFMTSGHASKKIVGDQNSLGSD 283
KT+T F ++K + QN GS+
Sbjct: 483 --SKTITEFW-----NEKKLQIQNLQGSE 504
>gi|193205702|ref|NP_001122693.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
gi|373253819|emb|CCD62143.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
Length = 463
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 160/269 (59%), Gaps = 14/269 (5%)
Query: 18 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 77
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M
Sbjct: 114 EFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIME 173
Query: 78 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 137
F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LGL
Sbjct: 174 FLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLP 232
Query: 138 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKT 196
+ RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK
Sbjct: 233 GRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKL 292
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSD 254
+SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 293 SSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR--- 349
Query: 255 PTQKTLTNFMTSGHASKKIVGDQNSLGSD 283
KT+T F ++K + QN GS+
Sbjct: 350 --SKTITEFW-----NEKKLQIQNLQGSE 371
>gi|408391946|gb|EKJ71312.1| hypothetical protein FPSE_08551 [Fusarium pseudograminearum CS3096]
Length = 639
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 152/253 (60%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NK
Sbjct: 224 SASIDEAYLNITEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNK 283
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VL +DR ++ F+ L R + GIG+V E L ++ I TC ++ + L +F
Sbjct: 284 PNGQYVLSSDRPTILAFMRDLSTRSVNGIGRVLERELLEI-DIKTCGDLYEHRQYLNPLF 342
Query: 122 SHSTADFFLSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T++F + LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 343 GEKTSEFLFTCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQD 402
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAE--LP-VSLR 235
M++ +GRTL LK+K +FEV TR L + I ++D+ +A +L K E +P + LR
Sbjct: 403 MKRAECKGRTLCLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLR 462
Query: 236 LIGLRVTQFNEDK 248
L+GLR T + K
Sbjct: 463 LMGLRCTHLVKTK 475
>gi|347833303|emb|CCD49000.1| similar to DNA-directed polymerase kappa [Botryotinia fuckeliana]
Length = 637
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NK
Sbjct: 196 SASIDEAYLNITEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNYNK 255
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ + N+R+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F
Sbjct: 256 PNGQYRVANNRVEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLF 314
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T+ A RKS+ +E TF+ D L KL AE L D
Sbjct: 315 GEKAFIFLMQCYLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKD 374
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+Q+ +GRTL LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LR
Sbjct: 375 LQRTQFKGRTLVLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLR 434
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 435 LMGLRCTNL 443
>gi|339243265|ref|XP_003377558.1| DNA polymerase kappa [Trichinella spiralis]
gi|316973633|gb|EFV57197.1| DNA polymerase kappa [Trichinella spiralis]
Length = 844
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 149/234 (63%), Gaps = 10/234 (4%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
E+A E+R V + GLTCS G+APN +LAK+ SDINKPNGQF + DR ++ F+ +LPI
Sbjct: 503 EVAREIRFLVEQATGLTCSIGIAPNSMLAKLGSDINKPNGQFHMRADRNFIVDFLRNLPI 562
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG---STNT 141
RK+ GIG VTE +L + G++TC E+ Q+ +L FS +A FL + LG+
Sbjct: 563 RKVCGIGAVTEALLNGL-GVSTCGELYQRRGILALAFSERSAISFLRISLGIDDEFCDKD 621
Query: 142 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 201
+ RKSIS+ERTFS + + L ++ LS D+ + L+G+T+TLK+KT F+V
Sbjct: 622 DEVASRKSISTERTFSEISEPSRLLAVCRKLCNSLSEDVIERNLKGKTVTLKVKTIDFDV 681
Query: 202 RTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKV 249
RTRA T+ +Y+ ++++I AS LL+ E+ P+ LRL+G+R++ E KV
Sbjct: 682 RTRANTVDRYVQAADEIYNIASSLLQEEIRARLPNPLRLRLMGVRLSTLQESKV 735
>gi|296413468|ref|XP_002836435.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630254|emb|CAZ80626.1| unnamed protein product [Tuber melanosporum]
Length = 606
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 186/350 (53%), Gaps = 37/350 (10%)
Query: 2 AASLDEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
AAS+DEA+L+IT + R + ++ E+LR V E ++ SAG+APN LAKV S+ N
Sbjct: 199 AASVDEAFLNITGYLEDHRDTTPDKVVEQLRREVLEHTKISVSAGIAPNARLAKVASNQN 258
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF +PNDR AVM F+ +LP+R++ G+G+V E L D G+ T ++ +L +
Sbjct: 259 KPNGQFRIPNDREAVMHFMRTLPVRRVNGVGRVFEREL-DAVGVRTWGDVFALRGILSKL 317
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
FS F L+ LGLG T P A + RKS+ +E TF L KL A+ L
Sbjct: 318 FSKKAWSFLLNSYLGLGRTCIHPVAEYERKSLGTESTFKDLSGPGPLRDKLRSTAQELER 377
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----PVS 233
D+ L GRT+T+K+K +++V +R L + ISS+ED+ HA LL+ EL P
Sbjct: 378 DLLAANLAGRTITVKVKLHTYQVHSRQKALHRVISSAEDLYNHALPLLQ-ELEGEFQPFK 436
Query: 234 LRLIGLRVTQFN-------------------EDKVRAPSDPTQKTLTNFMTSGHASKKI- 273
+RL+GLRVTQ + E + + P + +L ++SGH S+++
Sbjct: 437 IRLMGLRVTQLSSTRKGTGKMNFFKNLPQSIEGEAEWEAWP-EGSLDGLLSSGHLSQEVQ 495
Query: 274 ----VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 319
+ + +L + +N ++ S + +E P+C SLP
Sbjct: 496 DEEQLAIEEALNASLNMPARDTPQDPSPPPKMVLKERWEC--PICARSLP 543
>gi|406859501|gb|EKD12565.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C++ +S + ++LR V+E+ +T SAG+A N LAK+CS++NK
Sbjct: 192 SASIDEAYLNITEYCQKNDMSPEDAVQQLRREVHEKTKITISAGIAANAKLAKICSNLNK 251
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF LP +R A+M F+ LP RK+ GIG+V E L D GI TC ++ L +F
Sbjct: 252 PNGQFQLPIERSAIMAFMRDLPTRKVNGIGRVFEREL-DAVGIKTCGDIYTYRQYLSKLF 310
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T A RKS+ +E TF L +L AE L D
Sbjct: 311 GEKAFGFLMQCYLGLGRTRIQPAEDYERKSVGTESTFGEMSKPTELRERLRATAEELEKD 370
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
M + +GRTL LK+K ++EV TR V K + +ED+ + + L+ E P + LR
Sbjct: 371 MIRTQFKGRTLCLKVKLHTYEVFTRQVVPPKAVYLAEDLYNYGVPMLSKLEQEFPGLRLR 430
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 431 LMGLRCTHL 439
>gi|146182193|ref|XP_001470638.1| DNA polymerase IV / kappa [Tetrahymena thermophila]
gi|146143895|gb|EDK31392.1| DNA polymerase IV / kappa [Tetrahymena thermophila SB210]
Length = 950
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISG----IEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVC 56
+ LDEA LDIT+ ++ I+ ++ +R V+E GLTCS G+ PN++LAK+C
Sbjct: 197 SMGLDEANLDITDYLQQNNINSDAQIYDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKIC 256
Query: 57 SDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL 116
SD+NKPNGQF L ND + F+ LPIRKI GIG VTE IL+ + GI C ++L++
Sbjct: 257 SDMNKPNGQFQLINDEEKIKDFMKDLPIRKIPGIGNVTEQILKGI-GIEKCSQILERVID 315
Query: 117 LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176
+ F + D +S LG+G + + +KS+S RTF + K+ +I+++L
Sbjct: 316 IKICFKDLSFDHLVSSALGIGRSWHEEETEKKSLSVSRTFQAISTIEEINEKIHQISQLL 375
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LR 235
+ D + E G+ L + K F++R++ L KYI SE I K A L+K LP LR
Sbjct: 376 AEDAKAEQKIGKHLAVSFKNVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKELLPTEPLR 435
Query: 236 LIGLRVTQF 244
LIG+R++Q
Sbjct: 436 LIGIRLSQL 444
>gi|242780241|ref|XP_002479554.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
gi|218719701|gb|EED19120.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
Length = 654
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E +++R + EE +T SAG+A N LAK+ S+ NK
Sbjct: 209 SASIDEAYLNITAYCDENNMDPQEAVQQMRARIAEETKITVSAGIATNTKLAKIASNQNK 268
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ +P++R A+M+F+ LP+RK+ GIG+V E LR V GI TC ++ + +LL +F
Sbjct: 269 PNGQYFIPSEREAIMSFVKDLPVRKVNGIGRVFERELRAV-GIETCGQIYPQRALLKRLF 327
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T A RKS+ +E TF+ D + KL A+ L+ D
Sbjct: 328 GGKAFQFLMQCYLGLGRTKIQPAEDYERKSVGTESTFAEISDPDAIRVKLRWAADELAKD 387
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LR
Sbjct: 388 LARTQFKGRTLVLKVKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLR 447
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 448 LLGLRCTHL 456
>gi|452848121|gb|EME50053.1| hypothetical protein DOTSEDRAFT_164998 [Dothistroma septosporum
NZE10]
Length = 640
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL++T+ C E + + ++R V++E +T SAG+A N LAK+CS+ NK
Sbjct: 222 SASIDEAYLNLTQYCEEHHMEPEDAVSQMRAQVFQETRITISAGIAANAKLAKICSNKNK 281
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF LP DR +++ F+ +L RK+ GIG+V E L D GI TC ++ + + +F
Sbjct: 282 PNGQFKLPADRASILHFMRNLSTRKVNGIGRVLEREL-DAIGIKTCGDIFPQRHYINRLF 340
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
T +F + V LGLG T+ P F RKS+ +E +F D L KL AE L D
Sbjct: 341 GEKTFEFLMGVHLGLGRTDVRPIEEFGRKSVGTESSFKDISDPNELRDKLRWTAEELEKD 400
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELP-VSLR 235
+Q+ +GRTL LK+K ++EV TR V K + +++D+ + +L+ E P + LR
Sbjct: 401 LQRTEFKGRTLCLKVKLHTYEVFTRQVQPPKAVYTADDLYNFSLPMLQKLEQEFPNMKLR 460
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 461 LMGLRCTHL 469
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 151/233 (64%), Gaps = 6/233 (2%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
++ E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R ++ FI LPI
Sbjct: 311 KVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPI 370
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG+GS
Sbjct: 371 RKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSE 429
Query: 145 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 204
RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLKT++FEV+ R
Sbjct: 430 WERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKTSAFEVKQR 489
Query: 205 AVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQFNEDKVRAPS 253
++T ISS DI K A +LL+ E+ + LRL+G+R++ E ++PS
Sbjct: 490 SMTFPNPISSFADIHKAARILLETEMKNNSQLKLRLMGVRLSSL-EGTSKSPS 541
>gi|398412111|ref|XP_003857385.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
gi|339477270|gb|EGP92361.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
Length = 653
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
++S+DEAYL+IT+ C++ +S + ++R V+EE +T SAG+A N LAK+CS+ NK
Sbjct: 218 SSSIDEAYLNITQYCKKHDMSPEDAVSQMRAQVFEETKITVSAGIAANAKLAKICSNKNK 277
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ LP+DR +M F+ LP RK+ G+G+V E L D GI TC ++ + + +F
Sbjct: 278 PNGQYRLPSDRTTIMGFMRDLPTRKVNGVGRVLEREL-DAIGIKTCGDIGPQRHYINRLF 336
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F + V LGLG T A RKS+ +E TF D L KL I++ L D
Sbjct: 337 GEKAFEFLMGVHLGLGRTEVRPAGETERKSVGTESTFHDMSDPKELRDKLRWISDELEKD 396
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
+Q+ +GRTL LK+K ++EV TR K + +++D+ V L++E P + LR
Sbjct: 397 LQRTEFKGRTLVLKVKLHTYEVLTRQFQPPKAVYTADDLYHFGLPMLVKLESEHPGMKLR 456
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 457 LMGLRCTHL 465
>gi|443695884|gb|ELT96692.1| hypothetical protein CAPTEDRAFT_210052 [Capitella teleta]
Length = 443
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 151/242 (62%), Gaps = 14/242 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT+ ER E + RT+ E+ G+APN +LAKVCSD NKPN
Sbjct: 178 SLDEAYLDITQHLAERKNFDAE-QKTFRTADGEQRMF----GIAPNMMLAKVCSDFNKPN 232
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ+++P +R AVM F+ LP+RK+ GIG+V+ +L G+ TC ++ +K LL ++S
Sbjct: 233 GQYLIPFNRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFRKRGLLLKLYSA 291
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 183
+ ++FL V G+GST+ + RKS+S+ERTF+ A L+ K E+ E L D++KE
Sbjct: 292 ISFNYFLRVSAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCYELCEALVEDLKKE 351
Query: 184 GLRGRTLTLKLKTASFEVRTRAVTL-------QKYISSSEDILKHASVLLKAELPVSLRL 236
L+G+T+TLK+KT + VRT+A +L Q S++ D+L+ L E P+ LRL
Sbjct: 352 NLKGKTITLKIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEIRLCSPE-PLRLRL 410
Query: 237 IG 238
+G
Sbjct: 411 MG 412
>gi|440633626|gb|ELR03545.1| hypothetical protein GMDG_01296 [Geomyces destructans 20631-21]
Length = 625
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C I E E+LR V+E+ +T SAG+A N LAK+CS++NK
Sbjct: 200 SASIDEAYLNITTYCESNNIGPDEAVEQLRQEVHEKTKITISAGIAANTKLAKICSNMNK 259
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ L N+R A++ F+++LP RK+ G+G+V E L D G+ TC ++ Q L +F
Sbjct: 260 PNGQYRLQNNRGAIIAFMNTLPTRKVNGVGRVFEREL-DAVGVKTCGDIYQYRQYLSRLF 318
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T+T P + RKS+ +E TF L KL + A+ L D
Sbjct: 319 GEKAFSFLIHCYLGLGRTDTQPAEEYERKSVGTESTFGDLSSHKGLRDKLEKTAQDLEKD 378
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP---VSLR 235
M K ++GRTL LK+K ++EV TR + K + + D+ K++ +L K E ++LR
Sbjct: 379 MVKAQVKGRTLVLKVKLHTYEVLTRQIIPPKAVYLAPDLYKYSLPMLSKLEQEFKGLALR 438
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 439 LMGLRCTHL 447
>gi|212526212|ref|XP_002143263.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
gi|210072661|gb|EEA26748.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
Length = 647
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E +++R+ + +E +T SAG+A N LAK+ S+ NK
Sbjct: 207 SASIDEAYLNITAYCDENDMDPQEAVQQMRSRIADETKITVSAGIAANTKLAKIASNQNK 266
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F+ LP+RK+ GIG+V E LR + GI TC ++ + L +F
Sbjct: 267 PNGQFYIPSEREAIMAFVKDLPVRKVNGIGRVFERELRAI-GIETCGQIYPHRASLKRLF 325
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +E TFS D + KL A+ L+ D
Sbjct: 326 GEKAFHFLMQCHLGLGRTKIQPAVDYERKSVGTESTFSEISDPDAIRAKLRWAADELARD 385
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LR
Sbjct: 386 LSRTQFKGRTLVLKIKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLR 445
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 446 LLGLRCTHL 454
>gi|405119670|gb|AFR94442.1| DNA-directed polymerase kappa [Cryptococcus neoformans var. grubii
H99]
Length = 632
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 142/248 (57%), Gaps = 3/248 (1%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M ASLDE YL+IT ++ E+ ++R V E+ LT SAG+A NR+LAK+CSD N
Sbjct: 211 MMASLDEGYLNITPYMSTHNMTAAEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKN 270
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF L DR ++ F+ LP+RKI G G+VTE L + GI TC ++ +K L +
Sbjct: 271 KPNGQFELAFDRATIVRFLRDLPVRKIPGFGRVTERCL-EGLGIQTCGDIYEKRMDLLLM 329
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
LG+ R RKS+ ERTF D + L +I E L
Sbjct: 330 DHWFGFRGLCRAYLGIADNTVAPGRREERKSVGVERTFRDKMDDEEIMATLIDIVEELGK 389
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
D+ + G+T+T+K K ++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G
Sbjct: 390 DLDRLQYAGKTITIKYKLHTYENKTRAKSIPKYISSARDILPIAQELLKKELPLRIRLLG 449
Query: 239 LRVTQFNE 246
+R++ +
Sbjct: 450 VRLSTLKD 457
>gi|85092716|ref|XP_959512.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
gi|28920947|gb|EAA30276.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
Length = 626
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 148/253 (58%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C ++ + ++R ++E +T SAG+A N LAK+CS++NK
Sbjct: 221 SASIDEAYLNITDYCTRHAMAPADAVAKMRNDIHERTSITVSAGIAANTRLAKICSNMNK 280
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP++R+A++ F+ LP RK+ GIG+V E L GI+T ++ L +F
Sbjct: 281 PNGQYVLPSERVAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLF 339
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
++F L LGLG T A RKS+ +E TF D L KL +E L D
Sbjct: 340 GEKASEFLLHCFLGLGRTCVKPAETYERKSVGTESTFRDMSDPTELRNKLRRTSEDLEQD 399
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR L + + + D+ KHA + L+ E+P + LR
Sbjct: 400 LRRAECKGRTLCLKVKLHTFEVLTRQTVLPRAVHLATDLYKHALPMLTKLEQEIPGMKLR 459
Query: 236 LIGLRVTQFNEDK 248
L+GLR T K
Sbjct: 460 LMGLRCTNLATTK 472
>gi|453088846|gb|EMF16886.1| DNA-directed polymerase kappa [Mycosphaerella populorum SO2202]
Length = 660
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 148/249 (59%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C++ + + ++R V++E +T SAG+A N LAK+CS+ NK
Sbjct: 204 SASIDEAYLNITKYCQDHNMDPEDAVSQMREQVFQETKITISAGIAANAKLAKICSNKNK 263
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF LP++R +++F+ LP RK+ GIG+V E L D G+ TC ++ + +F
Sbjct: 264 PNGQFKLPSERTTILSFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYSHRQYINRLF 322
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F + V LGLG T+ A R+S+ +E TF D L KL AE L D
Sbjct: 323 GEKAFEFLMGVYLGLGRTDVKPAEEHARRSVGTESTFHDMSDPQELRDKLRRTAESLEED 382
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
+++ +GRTL LK+K ++EV TR V K + +++++ ++ +L+ E P + LR
Sbjct: 383 LKRTEFKGRTLCLKVKLHTYEVFTRQVQPPKAVFTADELYNYSLPMLQKLEKEYPGMKLR 442
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 443 LMGLRCTHL 451
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 152/294 (51%), Gaps = 40/294 (13%)
Query: 2 AASLDEAYLDITEVCRE-------------------------RGISGIEIAE-------- 28
A SLDEA LD+T+ RE R G E+ E
Sbjct: 235 AFSLDEAALDLTDYTREHWRKYVSQLSLKDWNHDGWMQDCETRQEGGHEMPESLTMKIAS 294
Query: 29 ----ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
E+R ++EE LT SAG+A N +LAK+CS+I KPNGQF L + ++ FI LP+
Sbjct: 295 AIVSEIRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPV 354
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RK+GGIGKV E IL I T +E+ + ++L VF TA + L LG+ +
Sbjct: 355 RKVGGIGKVMEKIL-AALNITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQEQQSESE 413
Query: 145 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 204
RKS S E TF D L + A I E L+ D+ ++ + R +TLKLK A F VRTR
Sbjct: 414 --RKSYSRETTFKAVSDFESLKQICASICEHLAQDLAEDNVAARNITLKLKCADFSVRTR 471
Query: 205 AVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQK 258
+VTL I S + +L+ A LLK E+P+SLRL+G+R R ++ QK
Sbjct: 472 SVTLNTSIQSCKRLLQVALDLLKREMPISLRLLGIRAASLIPSVQREETNQVQK 525
>gi|259485643|tpe|CBF82838.1| TPA: DNA-directed polymerase kappa, putative (AFU_orthologue;
AFUA_7G01270) [Aspergillus nidulans FGSC A4]
Length = 612
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 144/247 (58%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NK
Sbjct: 205 SASIDEAYLNITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN++ A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F
Sbjct: 265 PNGQFRVPNEKNAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLF 323
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LG+G T A RKS+ +ERTF + KL A+ L D
Sbjct: 324 GEKALHFLAQCYLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + GRTL LK+K A+FEV TR + +S+++D+ A + L+ E+P + LR
Sbjct: 384 LSRTQFMGRTLVLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLR 443
Query: 236 LIGLRVT 242
L+G+R T
Sbjct: 444 LLGIRCT 450
>gi|239615336|gb|EEQ92323.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ER-3]
Length = 605
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
++SLDEAYL+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NK
Sbjct: 204 SSSLDEAYLNITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNK 263
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PN+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F
Sbjct: 264 PNGQHYVPNERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLF 322
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T + RKS+ +ERTF T + A L KL A L D
Sbjct: 323 GEKCYRFLMQCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKD 382
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M + +GRTL LK+K +FEV +R + L K + SED+ ++A V L E P + +R
Sbjct: 383 MLRTQFKGRTLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIR 442
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 443 LMGLRCTNL 451
>gi|67525831|ref|XP_660977.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
gi|40744161|gb|EAA63341.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
Length = 609
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 144/247 (58%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NK
Sbjct: 202 SASIDEAYLNITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNK 261
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN++ A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F
Sbjct: 262 PNGQFRVPNEKNAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLF 320
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LG+G T A RKS+ +ERTF + KL A+ L D
Sbjct: 321 GEKALHFLAQCYLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKD 380
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + GRTL LK+K A+FEV TR + +S+++D+ A + L+ E+P + LR
Sbjct: 381 LSRTQFMGRTLVLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLR 440
Query: 236 LIGLRVT 242
L+G+R T
Sbjct: 441 LLGIRCT 447
>gi|261188840|ref|XP_002620833.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
gi|239591975|gb|EEQ74556.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
++SLDEAYL+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NK
Sbjct: 204 SSSLDEAYLNITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNK 263
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PN+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F
Sbjct: 264 PNGQHYVPNERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLF 322
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T + RKS+ +ERTF T + A L KL A L D
Sbjct: 323 GEKCYRFLMQCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKD 382
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M + +GRTL LK+K +FEV +R + L K + SED+ ++A V L E P + +R
Sbjct: 383 MLRTQFKGRTLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIR 442
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 443 LMGLRCTNL 451
>gi|402224218|gb|EJU04281.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 582
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 142/246 (57%), Gaps = 14/246 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
A DEAYL+IT+ C E + E + +R V++E GLT SAG+APN KP
Sbjct: 192 AGFDEAYLNITQYCSEHELGAEECVQVIRDEVHKETGLTISAGIAPN-----------KP 240
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQF+LP DR ++ F+ L +RK+ GIG+V E IL + G+ TC ++ + +++ +
Sbjct: 241 SGQFMLPFDRKGIVAFMKDLSVRKVPGIGRVNERIL-EAIGVKTCGDIYTQRAVITLLDH 299
Query: 123 HSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
L LG+GS P R RKS+ ERTF D + L L IAE L D
Sbjct: 300 ELGLHGLLHAHLGIGSNVVEPHIREERKSVGVERTFRAVGDSSKLMEILENIAESLEEDC 359
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
++ G G+TLTLK K ++EV TRA +L +YI S EDI S LL+ ELP+++RL+GLR
Sbjct: 360 EQTGWAGKTLTLKYKLHTYEVFTRARSLNRYIRSKEDIFSIGSELLRKELPLTVRLLGLR 419
Query: 241 VTQFNE 246
+T +
Sbjct: 420 LTHLKD 425
>gi|327357690|gb|EGE86547.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ATCC 18188]
Length = 565
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
++SLDEAYL+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NK
Sbjct: 204 SSSLDEAYLNITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNK 263
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PN+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F
Sbjct: 264 PNGQHYVPNERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLF 322
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T + RKS+ +ERTF T + A L KL A L D
Sbjct: 323 GEKCYRFLMQCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKD 382
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLR 235
M + +GRTL LK+K +FEV +R + L K + SED+ ++A V L E P + +R
Sbjct: 383 MLRTQFKGRTLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIR 442
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 443 LMGLRCTNL 451
>gi|336467327|gb|EGO55491.1| hypothetical protein NEUTE1DRAFT_85852 [Neurospora tetrasperma FGSC
2508]
gi|350288043|gb|EGZ69279.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 646
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 7/253 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C ++ + ++R+ ++E +T SAG+A N LAK+CS++NK
Sbjct: 221 SASIDEAYLNITDYCTRHAMAPADAVAKMRSDIHERTSITVSAGIAANTRLAKICSNMNK 280
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP++R A++ F+ LP RK+ GIG+V E L GI+T ++ L +F
Sbjct: 281 PNGQYVLPSERGAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLF 339
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
++F + LGLG T A RKS+ +E TF V D L KL +E L D
Sbjct: 340 GEKASEFLVHCFLGLGRTCVKPAETYERKSVGTESTFRVMSDPTELRNKLRRTSEDLEQD 399
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR L + + + D+ HA + L+ E+P + LR
Sbjct: 400 LRRAECKGRTLCLKVKLHTFEVLTRQTVLPRAVHLATDLYSHALPMLTKLEQEIPGMKLR 459
Query: 236 LIGLRVTQFNEDK 248
L+GLR T K
Sbjct: 460 LMGLRCTNLATTK 472
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAY+DITE + +G ++ ++R +++E G+TCSAGVA N ++AK+ +D+NKPN
Sbjct: 185 SMDEAYIDITEYLKTQGGVVEDVVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPN 244
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ ++ D + + F++ L +RKI G+G+VTE +L + I ++++ S+L
Sbjct: 245 GQTIVQPDMVCIQNFLNPLSVRKIPGVGRVTEKLLSSL-NIFCIQDIISHRSVLFHCMRR 303
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 183
T +F L LG+ ++ RK +S ERTF T L + ++++L+ D++ E
Sbjct: 304 KTFEFLLQSALGIAPAFICESESRKGMSRERTFKPTSSLEELRKICESVSKLLADDLEAE 363
Query: 184 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+ +TLTLK+K + F VRTRAVT +I E IL++A LL E+P+ +RL+G+R
Sbjct: 364 DMYAKTLTLKIKCSDFSVRTRAVTKCFFIYRYEQILENAWKLLLKEMPIEIRLLGVR 420
>gi|340386730|ref|XP_003391861.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 427
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 146/229 (63%), Gaps = 11/229 (4%)
Query: 16 CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 75
C ER + E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R +
Sbjct: 206 CAER------VVNEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKI 259
Query: 76 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 135
+ FI LPIRK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG
Sbjct: 260 LEFIRKLPIRKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLG 318
Query: 136 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 195
+GS RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLK
Sbjct: 319 IGSCTVHSEWERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLK 378
Query: 196 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLR 240
T++FEV+ R++T ISS DI K A +LL++E+ + LRL+G +
Sbjct: 379 TSAFEVKQRSMTFPNPISSFADIHKAARILLESEMKNNSQLKLRLMGTK 427
>gi|327298651|ref|XP_003234019.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
gi|326464197|gb|EGD89650.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
Length = 604
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 142/245 (57%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NK
Sbjct: 210 SASVDEAYLNITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F++ +P+RK+ G+G+V E L G+ TC ++ Q +L +F
Sbjct: 270 PNGQFYVPNERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGVTTCGDIYQYRGMLSQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P F RKS+ +E TF+ D L KL A L D
Sbjct: 329 GQKAFCFLMQCYLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFHQLQEKLRWTASALEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ G +GRTL LK+K +FEV +R K + ++D+ K++ LL K + +R
Sbjct: 389 LRAAGTKGRTLVLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIR 448
Query: 236 LIGLR 240
L+GLR
Sbjct: 449 LMGLR 453
>gi|198425156|ref|XP_002120223.1| PREDICTED: similar to polymerase (DNA directed), kappa [Ciona
intestinalis]
Length = 706
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 156/280 (55%), Gaps = 40/280 (14%)
Query: 4 SLDEAYLDITEVCRER----------------------------------GISGIEIAEE 29
SLDEA+LDIT+ ++R G S E+A+E
Sbjct: 201 SLDEAFLDITDHLQKRLIYDQEERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKE 260
Query: 30 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 89
+R + ++ LT SAG+APN +LAK+ SD+NKPNGQ +R +M FI P+RK+ G
Sbjct: 261 IRFRIQQKTLLTASAGIAPNTMLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNG 320
Query: 90 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 149
IGKVTE +L + G+ C ++ + + L +FS ++ FF + LG S RKS
Sbjct: 321 IGKVTEQLLSSL-GVQKCGDIYEMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGERKS 379
Query: 150 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 209
IS+ERTFS ++ L+ KL E+ L+ADM+K+ ++G+TLTLK K F++ TR+ T+
Sbjct: 380 ISTERTFSTISNRDELFAKLDELCHSLAADMKKQNVQGKTLTLKTKNVDFQLHTRSKTIN 439
Query: 210 KYISSSEDILKHASVLLKAEL-----PVSLRLIGLRVTQF 244
+++ + I A LLK E+ +SLRL+G+ +++
Sbjct: 440 VPMTNYQTIFPVAQELLKQEILNANNKLSLRLMGVGLSKL 479
>gi|299117623|emb|CBN75465.1| hypothetical protein Esi_0099_0091 [Ectocarpus siliculosus]
Length = 713
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 22/278 (7%)
Query: 26 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 85
+AEE+R + E LT S G+ PN +LAK+ SD NKP+GQ + DR V+ F+ LP+R
Sbjct: 283 LAEEIRGRIREATKLTASVGIGPNFMLAKIASDWNKPDGQMCIGGDRAEVLRFLHDLPVR 342
Query: 86 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN----T 141
KIGG+GKV E LR+ G+ TC ++ ++ + V + T+ + + LG+ S + T
Sbjct: 343 KIGGVGKVQEKCLREALGVVTCGDLFRERGSVIHVMTPHTSRWLIKASLGIASADHDVAT 402
Query: 142 PQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 196
QA+ RK IS ERTF L K EI + L+A+M +GL +T+ LK+KT
Sbjct: 403 EQAQAVGAVTRKQISKERTFGELSAPRDLLNKCREICDSLAAEMATKGLEAKTVGLKVKT 462
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----------PVSLRLIGLRVTQFN 245
F+VRT+ T Y+SS++D+ AS LL+ E+ + LRL+G+R + F
Sbjct: 463 TKFQVRTQDSTGNAYVSSADDLFSAASALLQREIQGAAAASAPGGKLRLRLMGVRASGFR 522
Query: 246 EDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 283
+ AP P Q TL F++S A G+ S G+D
Sbjct: 523 -GQAGAPILPGQATLDGFLSSKAAEGGCQGEDES-GND 558
>gi|336260609|ref|XP_003345098.1| hypothetical protein SMAC_07389 [Sordaria macrospora k-hell]
gi|380096554|emb|CCC06602.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 636
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C ++ + ++R+ ++E+ G+ SAG+A N LAK+CS++NK
Sbjct: 221 SASIDEAYLNITDYCTRHTMTAADAVSKMRSEIHEKTGIPVSAGIAANTRLAKICSNMNK 280
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+VLP++R A+M F+ LP RK+ GIG+V E L V GI+T ++ L +F
Sbjct: 281 PNGQYVLPSERAAIMEFMRDLPSRKVNGIGRVFERELAAV-GIHTLGDIHPNRQYLRQLF 339
Query: 122 SHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+F + LGLG T A RKS+ +E TF D L KL AE L D
Sbjct: 340 GEKAFEFLIHCYLGLGRTCVKPAETYERKSVGTEGTFRDMSDPTELRSKLCRTAEDLEQD 399
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+++ +GRTL LK+K +FEV TR V L + + + D+ +A + L+ E+P + LR
Sbjct: 400 LRRAECKGRTLCLKVKLHTFEVLTRQVVLPRAVYLAADLYNYALPMLTKLEQEIPGMKLR 459
Query: 236 LIGLR 240
L+GLR
Sbjct: 460 LMGLR 464
>gi|145348411|ref|XP_001418642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578872|gb|ABO96935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 427
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 11/248 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDI 59
+A SLDEAY+++TE C + + IAEE+R+ V E GLTCS G +R LAKVCSD
Sbjct: 180 IAGSLDEAYIEVTEYCEKHDTTMEAIAEEIRSKVKEATGGLTCSVGGGCSRRLAKVCSDF 239
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
NKPNGQ++L R ++ F+ LP+RK+ GIGK E IL + F I TC ++L K + + A
Sbjct: 240 NKPNGQYILGTTRDDILKFLRDLPVRKMYGIGKTLERILNE-FDIKTCGDLLAKRATMLA 298
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAE 174
+F+ DF L + LG+G+ P+ + RK +S TF T DKA L K+ E+A
Sbjct: 299 LFTPKAFDFLLGIALGIGTECHPRETPEGSGGRKGVSKSETFKATADKAYLDAKMTELAT 358
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-- 232
++ + Q+ L+GR + +KLK ++F+V R TL + + I+ A L++ E +
Sbjct: 359 EVALECQRLNLKGRMVAVKLKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGA 418
Query: 233 --SLRLIG 238
+LRL+G
Sbjct: 419 NMTLRLVG 426
>gi|326472504|gb|EGD96513.1| DNA-directed polymerase kappa [Trichophyton tonsurans CBS 112818]
gi|326484790|gb|EGE08800.1| DNA-directed polymerase kappa [Trichophyton equinum CBS 127.97]
Length = 604
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NK
Sbjct: 210 SASVDEAYLNITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F
Sbjct: 270 PNGQFYVPNERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P F RKS+ +E TF+ D L KL A L D
Sbjct: 329 GQKAFCFLMQCYLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFDQLQEKLRWTASALEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ +GRTL LK+K +FEV +R K + ++D+ K++ LL K + +R
Sbjct: 389 LRAAETKGRTLVLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIR 448
Query: 236 LIGLR 240
L+GLR
Sbjct: 449 LMGLR 453
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 29 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 88
ELR +++ LT SAG+A N +LAK+CSD+NKPNGQ+VLP R V+TF+ LP+RKIG
Sbjct: 236 ELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIG 295
Query: 89 GIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 148
GIGKVTE IL + G++T E+ + + +F+ TA + L LG+ Q RK
Sbjct: 296 GIGKVTEKILNEALGVHTGGELFNQRGKIFHLFTEKTAVWLLQTSLGVRERREKQE--RK 353
Query: 149 SISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 208
S S ERTF D L K E+ +ML+ D++K + +T K F +R+VTL
Sbjct: 354 SFSRERTFRSLSDPKELEAKCLEVCKMLAKDLEKANKAAKNVTFVYKDTDFARCSRSVTL 413
Query: 209 QKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
I ++ED+ A LL+ ELP++LRL+G+R
Sbjct: 414 ASAIFTAEDLYSSAVELLRRELPLTLRLLGVR 445
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 148/253 (58%), Gaps = 4/253 (1%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AA DE YL+IT C E +S + +R +V+ E LT SAG+APN++LAK+CSD NK
Sbjct: 195 AAGCDEGYLNITPYCEEYMLSADDCVRGMRETVFRETKLTVSAGIAPNKVLAKICSDRNK 254
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L AV F+ L IRKI G+G+V E +L D GI TC ++ + L +
Sbjct: 255 PNGQFALDFTPAAVKAFMHDLSIRKIPGVGRVNERLL-DSVGIQTCGDIYTHRATLALMD 313
Query: 122 SHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+ F L LG+ S Q RKSI +ERTF K + RKL E+A L+ D
Sbjct: 314 KYFGLHFLLQTYLGIASNVVQPGQREERKSIGAERTFHTISSKEDILRKLEEVAAELNED 373
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIG 238
+++ G G+T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ LRLIG
Sbjct: 374 LERTGWTGKTVTLKYKLDTYQVFTRAKSFDRWISTKKEDLFATGKELLLPELPLRLRLIG 433
Query: 239 LRVTQFNEDKVRA 251
LRV + + +V A
Sbjct: 434 LRVMKLKDLRVDA 446
>gi|299751501|ref|XP_002911648.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
gi|197244665|dbj|BAG68959.1| DNA polymerase kappa [Coprinopsis cinerea]
gi|298409403|gb|EFI28154.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
Length = 707
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 11/239 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
A +DEAYL++T C++ G + E+ E+R +V++E LT SAG+APN++LAK+CSD NKP
Sbjct: 197 AGVDEAYLNVTAYCKQHGKTVDEVVSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKP 256
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF L + ++ F+ SL IRK+ G+G+V E +L D GI TC ++ Q+ ++ +
Sbjct: 257 NGQFKLEFEPDSIKAFMHSLSIRKVPGVGRVNERLL-DSIGIRTCGDIYQQRGVIALMDK 315
Query: 123 HSTADFFLSVGLGLGSTN-TPQAR-FRKSISSERTFSVTEDK--------ALLYRKLAEI 172
DF L V LG+ S + P AR RKSI +ERTFS + + KL E+
Sbjct: 316 RFGLDFLLRVYLGIASNHVAPHAREERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEV 375
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
AE L DM++EG G+T+TLK K +++ TRA K+I++ E++ LL + P
Sbjct: 376 AEELVEDMKREGWVGKTVTLKYKLDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434
>gi|315041825|ref|XP_003170289.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
gi|311345323|gb|EFR04526.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
Length = 604
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 151/276 (54%), Gaps = 16/276 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + + ++LR V+ + G+T SAG+A N +AK+ S+ NK
Sbjct: 210 SASVDEAYLNITQYCAANNVDPQDAVQQLRDEVFAQTGVTVSAGIAANAKIAKITSNWNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F
Sbjct: 270 PNGQFHVPSERAAIMDFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLSQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P F RKS+ +E TF+ D L KL A L D
Sbjct: 329 GQKAFCFLMQCYLGLGRTQIQPAGTFPRKSVGTEHTFADLGDFHQLQEKLKWTASALEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ +GRTL LK+K +FE+ +R K + ++D+ K++ LL K + +R
Sbjct: 389 LRAAETKGRTLVLKVKLHTFELLSRQTVAPKPLLLADDLYKYSLPLLTKLYKERPQMKIR 448
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASK 271
L+GLR T T+K NF G A +
Sbjct: 449 LMGLRCTSLVS---------TKKGTFNFFNRGDAGQ 475
>gi|302666871|ref|XP_003025031.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
gi|291189111|gb|EFE44420.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
Length = 605
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NK
Sbjct: 210 SASVDEAYLNITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F
Sbjct: 270 PNGQFYVPSERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P F RKSI +E TF+ D L KL A L D
Sbjct: 329 GQKAFCFLMQCYLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ +GRTL LK+K +FEV +R K + ++D+ K++ LL K + +R
Sbjct: 389 LRAAETKGRTLVLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIR 448
Query: 236 LIGLR 240
L+GLR
Sbjct: 449 LMGLR 453
>gi|302507978|ref|XP_003015950.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
gi|291179518|gb|EFE35305.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
Length = 605
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NK
Sbjct: 210 SASVDEAYLNITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F
Sbjct: 270 PNGQFYVPSERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLF 328
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P F RKSI +E TF+ D L KL A L D
Sbjct: 329 GQKAFCFLMQCYLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ +GRTL LK+K +FEV +R K + ++D+ K++ LL K + +R
Sbjct: 389 LRAAETKGRTLVLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIR 448
Query: 236 LIGLR 240
L+GLR
Sbjct: 449 LMGLR 453
>gi|242206923|ref|XP_002469316.1| predicted protein [Postia placenta Mad-698-R]
gi|220731571|gb|EED85414.1| predicted protein [Postia placenta Mad-698-R]
Length = 527
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 152/269 (56%), Gaps = 15/269 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AA DE YL+IT CR++ ++ E ++R +VY+E LT SAG+APN+ NK
Sbjct: 173 AAGCDEGYLNITAYCRDQQLTADECVRQMRETVYQETKLTVSAGIAPNK---------NK 223
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L + A+ F+ +L IRKI G+G+V E +L D GI TC ++ ++ +
Sbjct: 224 PNGQFTLDFEPRAIKAFMRNLSIRKIPGVGRVNERLL-DSIGIKTCGDIYTHRVVVSLMD 282
Query: 122 SHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F L LG+ S Q RKSI +ERTF ++ + KL E+A L +D
Sbjct: 283 KEFGLQFLLQTYLGIASNVVQPGQREERKSIGAERTFHPLGNQDAILCKLEEVAAELESD 342
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 239
M G G+T+TLK K +++V TRA + +++S+ ++ L +A LL E+P++LRLIGL
Sbjct: 343 MTSGGWTGKTVTLKFKLDTYQVFTRAKSFDRWVSTKKEDL-YAVKLLMPEMPLTLRLIGL 401
Query: 240 RVTQFNEDKVRAPSDPTQKTLTNFMTSGH 268
RVT+ + +R S+ + F S +
Sbjct: 402 RVTKLKD--LRVESEKKASGIKRFFQSAN 428
>gi|302409854|ref|XP_003002761.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
gi|261358794|gb|EEY21222.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
Length = 407
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 211/441 (47%), Gaps = 64/441 (14%)
Query: 30 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 89
+R ++E+ +T SAG+A N LAK+CS++NKPNGQ++LP+DR ++M F+ SLP RK+ G
Sbjct: 1 MRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQYLLPSDRASIMKFMGSLPPRKVNG 60
Query: 90 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-R 147
+G+V E L ++ G+ TC E+ + L +F +F + LGLG T P + R
Sbjct: 61 VGRVLERQLTEI-GVTTCGEIYEYRQYLNQLFGQKAFEFLIHCYLGLGRTKIQPAEEYER 119
Query: 148 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 207
KS+ +E TF D L KL A+ L DM++ ++GRTL LK+K ++EV TR V
Sbjct: 120 KSVGTESTFHDMSDPTQLTEKLRWTADELEKDMKRAEVKGRTLVLKIKLHTYEVFTRQVV 179
Query: 208 LQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 263
QK I ++D+ H+ + L+ E+P + LRL+GLR+T K T+ F
Sbjct: 180 TQKSICLADDLFNHSLPILTKLQQEIPDMKLRLMGLRMTHLVSTK-------KPDTMAFF 232
Query: 264 MTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLND 323
G S+K D + GS D D E + V++ + +E
Sbjct: 233 ---GFRSRK---DNAATGSPSKSDA---DGEKLNTQGVTDDDGWE--------------- 268
Query: 324 ENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN 383
+ E E +E +L E + + E S K+I P N + +
Sbjct: 269 -------QWPEEELFQLDE--ELQEQANTAAEEVEDSVSSPFRRHGKEILP-NPIDEDAP 318
Query: 384 QKDQFIWLDDYKCSLCGTEMPPSFIEER--QEHSDFHLAERLQKEESGSDLRILTHRERC 441
D +W C +CG P +ER EH D L+ + +E D+ L C
Sbjct: 319 VSDAELW----DCPICGRPQAP---DERTFNEHIDLCLSRQTIREAVQEDVAPLA--AAC 369
Query: 442 VRT-----QRDHIASHRKRKK 457
+R+ +R + + RKR +
Sbjct: 370 IRSSTPEPKRTKLGNDRKRGR 390
>gi|343428792|emb|CBQ72337.1| related to DNA polymerase kappa [Sporisorium reilianum SRZ2]
Length = 654
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
ASLDEAYLDIT+ + G S ++ ++LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 240 ASLDEAYLDITDYVEQHGGSIDQVVQQLRDQVRSETQLTVSVGIAPNTMLAKISSDRNKP 299
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQF + DR A++ F+ LP RKI GIG+V E IL + G++TC E+ K L F
Sbjct: 300 DGQFRVQPDRKAIVDFMRDLPCRKIPGIGRVNERIL-ESLGVSTCGEIWNKRVELWLAFD 358
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
++ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 359 -GKIEWLVKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTQALLDLLKESAQRVEQDL 417
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 236
++ +G+T+TL K +++ +RA T + + +E++ + S LL E+ +SLRL
Sbjct: 418 ERLDFKGKTITLVAKRDNYQRFSRARTSTRLVHRAEELYEITSSLLLHEIEREGQLSLRL 477
Query: 237 IGLRVTQF 244
IG+RVTQ
Sbjct: 478 IGVRVTQL 485
>gi|403341934|gb|EJY70284.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 912
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 147/245 (60%), Gaps = 9/245 (3%)
Query: 6 DEAYLDITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
DEA LD+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NK
Sbjct: 427 DEANLDLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNK 486
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +F
Sbjct: 487 PNGQFYLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIF 545
Query: 122 SHSTADFFLSVGLGLGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
S T+ F + LG+ +KSIS TF K++EI E L+
Sbjct: 546 SEKTSYFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQ 605
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLI 237
M K + G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P ++RLI
Sbjct: 606 RMDKRKIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLI 665
Query: 238 GLRVT 242
G++++
Sbjct: 666 GVKMS 670
>gi|425778909|gb|EKV17010.1| DNA-directed polymerase kappa, putative [Penicillium digitatum
PHI26]
Length = 621
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 16/269 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E E+ + LR + E ++ SAG+ N +AK+ S++NK
Sbjct: 210 SASIDEAYLNITAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F
Sbjct: 270 PNGQFQVPNEREAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLF 328
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T + + RKS+S+E TF DK L KL A+ L+ D
Sbjct: 329 GEKAFQFLAQCYLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K +FEV TR + +S ++D+ A + L+ ++P + LR
Sbjct: 389 LARTQFKGRTLALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLR 448
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFM 264
L+GLR + TQK NF
Sbjct: 449 LLGLRCSNLVS---------TQKVGINFF 468
>gi|425773335|gb|EKV11693.1| DNA-directed polymerase kappa, putative [Penicillium digitatum Pd1]
Length = 621
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 16/269 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E E+ + LR + E ++ SAG+ N +AK+ S++NK
Sbjct: 210 SASIDEAYLNITAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNK 269
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F
Sbjct: 270 PNGQFQVPNEREAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLF 328
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T + + RKS+S+E TF DK L KL A+ L+ D
Sbjct: 329 GEKAFQFLAQCYLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKD 388
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K +FEV TR + +S ++D+ A + L+ ++P + LR
Sbjct: 389 LARTQFKGRTLALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLR 448
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFM 264
L+GLR + TQK NF
Sbjct: 449 LLGLRCSNLVS---------TQKVGINFF 468
>gi|196001133|ref|XP_002110434.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
gi|190586385|gb|EDV26438.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
Length = 653
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 150/249 (60%), Gaps = 14/249 (5%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
++ E+R + + LT SAG+ PN++LAK+CSD KPNGQF + R ++ F+ LP
Sbjct: 256 DVMREIRFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQFKVEFTRDKIIEFMRQLPT 315
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RKI GIGKV+E +L ++ I+ C+E+ K L+ +FS+ + FFL+V +G+GS
Sbjct: 316 RKISGIGKVSERLLNEI-EISNCKELYDKRDLIYLLFSNVSTKFFLAVAMGIGSNEVSSK 374
Query: 145 RF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 203
+ RKSIS ERTF A + K ++ + L+ M+KE + GR LT+KLKT +FEV+
Sbjct: 375 NYQRKSISCERTFGEISRLADMLVKCQKLCDNLANHMKKENITGRCLTVKLKTVAFEVKQ 434
Query: 204 RAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSD--P 255
R+V+L+ + +S+ ++ AS ++++E + LRL+G++++ R SD
Sbjct: 435 RSVSLKHHTNSTTEMFNIASEVIRSERLACQPERLRLRLMGIKMSTLK----RHESDEKS 490
Query: 256 TQKTLTNFM 264
Q TLT +
Sbjct: 491 IQDTLTRYF 499
>gi|443893809|dbj|GAC71265.1| predicted DNA damage inducible protein [Pseudozyma antarctica T-34]
Length = 658
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
ASLDEAYLDIT+ + S E+ ++LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 249 ASLDEAYLDITDYLEQHSGSIDEVVQQLRDEVRNETQLTVSVGIAPNTMLAKISSDRNKP 308
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQF + DR ++ F+ LP RKI GIG+V E IL + G+NTC ++ L
Sbjct: 309 DGQFRVHPDRKTIVDFMRDLPCRKIPGIGRVNERIL-ESLGVNTCGDIWHNRVQLWLALD 367
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
D+ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 368 -GKIDWLIKAHLGIGNTVVEPSKREQRKSVGREHTFSPTSDTQSLLDLLKESAQRVQNDL 426
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 236
++ +G+T+TL K +++ +RA T + + ++E++ + S LL E+ P+SLRL
Sbjct: 427 ERLDFKGKTVTLVAKRDNYQRFSRARTSTRLVHTAEELYEITSSLLLQEIERQGPLSLRL 486
Query: 237 IGLRVTQF 244
IG+RVT
Sbjct: 487 IGVRVTHL 494
>gi|403367013|gb|EJY83315.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 699
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 148/245 (60%), Gaps = 9/245 (3%)
Query: 6 DEAYLDITEVCRERGIS----GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
DEA LD+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NK
Sbjct: 214 DEANLDLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNK 273
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +F
Sbjct: 274 PNGQFYLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIF 332
Query: 122 SHSTADFFLSVGLGLGSTNTPQ---ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
S T+ F + LG+ + +KSIS TF K++EI E L+
Sbjct: 333 SEKTSYFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQ 392
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLI 237
M K + G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P ++RLI
Sbjct: 393 RMDKRKIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLI 452
Query: 238 GLRVT 242
G++++
Sbjct: 453 GVKMS 457
>gi|296818533|ref|XP_002849603.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
gi|238840056|gb|EEQ29718.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
Length = 612
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 142/256 (55%), Gaps = 7/256 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT+ C + ++LR + + +T SAG+A N +AK+ S+ NK
Sbjct: 213 SASVDEAYLNITQYCATNNVDPQAAVQQLRDEIAAQTRVTVSAGIAANAKIAKISSNWNK 272
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F
Sbjct: 273 PNGQFHVPSERAAIMEFMAKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLTQLF 331
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
H F + LGLG T P F RKSI +E TF+ D L KL A L D
Sbjct: 332 GHKAFCFLMQCYLGLGRTRIQPAGTFPRKSIGTEHTFADLGDLHQLQEKLKWTASELEKD 391
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLR 235
++ +GRTL LK+K +FEV +R K + + D+ K++ LL K + +R
Sbjct: 392 LRSAETKGRTLVLKVKLHTFEVLSRQTVAPKPLMLAGDLYKYSLPLLAKLYKERPQMKIR 451
Query: 236 LIGLRVTQFNEDKVRA 251
L+GLR T K A
Sbjct: 452 LMGLRCTNLVSTKREA 467
>gi|321257026|ref|XP_003193442.1| hypothetical protein CGB_D2570C [Cryptococcus gattii WM276]
gi|317459912|gb|ADV21655.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 559
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 137/248 (55%), Gaps = 10/248 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M ASLDE YL+IT ++ E+ ++R V E+ LT SAG+A NR+LAK+CSD N
Sbjct: 211 MMASLDEGYLNITPYMSAHNMTASEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKN 270
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF L DR ++ F+ LP+RKI G G+VTE L + I TC ++ +K L +
Sbjct: 271 KPNGQFELAFDRATIVRFMRDLPVRKIPGFGRVTERCL-EGLEIETCGDIYEKRMDLLLM 329
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
LG+ R RKS+ ERTF D + L EI E L
Sbjct: 330 DHWFGFRGLCRAYLGIADNTVAPGRREERKSVGVERTFRDKTDDEEIMATLIEIVEELGK 389
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
D+ + G+T+T+K K TRA ++ KYISS+ DIL A LLK ELP+ +RL+G
Sbjct: 390 DLDRLQFAGKTITIKYK-------TRAKSISKYISSTRDILPVAQELLKKELPLRIRLLG 442
Query: 239 LRVTQFNE 246
+R++ +
Sbjct: 443 VRLSTLKD 450
>gi|353234314|emb|CCA66340.1| related to DNA polymerase kappa [Piriformospora indica DSM 11827]
Length = 664
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 149/246 (60%), Gaps = 6/246 (2%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNR--LLAKVCSDINKP 62
+DEAYL+IT+ C I+ E E +R ++++E LT SAG+APN+ +LAK+CS+ NKP
Sbjct: 215 VDEAYLNITDYCEANKITPEECTENIRKAIFQETKLTASAGIAPNKRKMLAKICSERNKP 274
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG F L D A+ F+ LPIR+I G+G+VTE +L V GI TCE++ + + L +
Sbjct: 275 NGLFKLEFDAQAIRDFMKGLPIRRIPGVGRVTERLLESV-GIKTCEDIYTQRATLVLMDK 333
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
H L + LGLGS P R RKS+ SERTF D A + KL ++A+ L DM
Sbjct: 334 HFHMHDKLEIYLGLGSNVVRPWPREARKSVGSERTFHAISDPARINEKLEQVAKELEEDM 393
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
++ G G T+TLKLK +FE RA ++ + I ++L LL ELP+ LRL+GLR
Sbjct: 394 ERLGYSGHTVTLKLKLDTFEG-NRAKSVHRPIRKYNELLSVGQELLAHELPLKLRLLGLR 452
Query: 241 VTQFNE 246
VT +
Sbjct: 453 VTNLKD 458
>gi|115402397|ref|XP_001217275.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
gi|114189121|gb|EAU30821.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
Length = 540
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 155/286 (54%), Gaps = 16/286 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E+ +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 142 SASIDEAYLNITAYCLENNLGPEEVVSRMRAEVLEKTQISVSAGIAANAKIAKIASNRNK 201
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PNDR A+M F+ LP+RK+ G+G+V E L D G+ TC ++ +LL +F
Sbjct: 202 PNGQFCVPNDRDAIMEFMRELPVRKVNGVGRVFEREL-DAIGVKTCGDIYPARALLAKLF 260
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T P + RKS+ +E TFS K KL +A+ L D
Sbjct: 261 GEKAFQFLAQCYLGLGRTKIQPVENYERKSVGTETTFSEIGTKEEFRAKLLWVAQELEKD 320
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV TR + +S ++D+ A + L+ E+P + LR
Sbjct: 321 LARTQFKGRTLVLKVKLATFEVLTRQYQPPRAVSVAKDLYAFALPMLEKLEKEIPNMKLR 380
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLG 281
L+GLR T T+K +F + K G +S G
Sbjct: 381 LLGLRCTHLVS---------TKKAGIDFFGWARSGKPSTGSADSSG 417
>gi|320033815|gb|EFW15761.1| DNA-directed polymerase kappa [Coccidioides posadasii str.
Silveira]
Length = 609
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 144/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NK
Sbjct: 201 SASIDEAYLNITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNK 260
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P+DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F
Sbjct: 261 PNGQFYVPSDRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLF 319
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG TN A R RKS+ +ERTF E A L KL A L D
Sbjct: 320 GQKAFQFLMQCYLGLGRTNIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERD 379
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLR 235
++ +GRTL LK+K +FE+ +R V K + ++D+ K+A LL E P + +R
Sbjct: 380 LRVAEFKGRTLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIR 439
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 440 LMGLRCTNL 448
>gi|303309978|ref|XP_003065002.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104661|gb|EER22857.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 609
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 144/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NK
Sbjct: 201 SASIDEAYLNITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNK 260
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P+DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F
Sbjct: 261 PNGQFYVPSDRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLF 319
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG TN A R RKS+ +ERTF E A L KL A L D
Sbjct: 320 GQKAFQFLMQCYLGLGRTNIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERD 379
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLR 235
++ +GRTL LK+K +FE+ +R V K + ++D+ K+A LL E P + +R
Sbjct: 380 LRVAEFKGRTLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIR 439
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 440 LMGLRCTNL 448
>gi|326434682|gb|EGD80252.1| hypothetical protein PTSG_13123 [Salpingoeca sp. ATCC 50818]
Length = 860
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 144/269 (53%), Gaps = 20/269 (7%)
Query: 1 MAASLDEAYLDITEVCRERG---------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRL 51
++ LDEA LDIT+ + R + + EE+R + LT SAG+A R
Sbjct: 269 LSGGLDEASLDITDCVQRRMDRDLSLTREATACALVEEMRARILAATNLTASAGIACTRR 328
Query: 52 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
LAK CSD KPNGQ+ LP +V F+ LPIRK+ GIG VTE +LR G+ T ML
Sbjct: 329 LAKTCSDWKKPNGQYFLPFTLDSVTAFLRPLPIRKLSGIGNVTEELLRG-LGVETVAGML 387
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 171
++ + L +F T FF+ V G+ T + R RKSIS+ERTF T + L L
Sbjct: 388 EQRAKLQLLFRPRTFQFFMHVAHGVSVPRT-RTRERKSISTERTFDATSSRVQLLSILNR 446
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
I L+A+MQ++ L GR LTLK+K A+F V R+VTL I+ S + ++ EL
Sbjct: 447 ICSKLTAEMQEKQLAGRCLTLKVKLATFHVLQRSVTLPTPIADSSVLFAQMRAIMARELE 506
Query: 232 V---------SLRLIGLRVTQFNEDKVRA 251
++RL+G+RV+ + RA
Sbjct: 507 AASPSPSRMPAVRLLGVRVSSLTFGRNRA 535
>gi|169596118|ref|XP_001791483.1| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
gi|160701232|gb|EAT92306.2| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
Length = 407
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 7/226 (3%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
E +LR V+E A +T SAG+A N LAK+CS+ NKPNGQF LP+DR +M F+ ++P
Sbjct: 5 EAVSQLRADVHERAKITVSAGIAANAKLAKICSNKNKPNGQFFLPSDRQTIMEFMKTMPT 64
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 144
RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T +A
Sbjct: 65 RKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLPKLFGQKAFQFLMQCYLGLGRTKIQRA 123
Query: 145 R--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 202
RKS+ +E TF + L KL IAE L D+++ +GRTL +K+K ++EV
Sbjct: 124 EDYERKSVGTETTFKEMQSPDALRDKLRYIAEELEGDLKRTEYKGRTLCIKIKLHTYEVH 183
Query: 203 TRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 244
TR +T + ++D+ K+ +L+ E+P + LRL+GLR T
Sbjct: 184 TRQMTPPFAVHRADDLYKYGLPMLEKLMKEIPNMRLRLMGLRATHL 229
>gi|358375860|dbj|GAA92435.1| DNA-directed polymerase kappa [Aspergillus kawachii IFO 4308]
Length = 602
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 206 SASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ LP+RK+ G+G+V E L D GI TC ++ + ++L +F
Sbjct: 266 PNGQFCVPNEREAIMRFMEELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +ERTF +K KL IAE L D
Sbjct: 325 GEKAFHFLMQCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +R
Sbjct: 385 LARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMR 444
Query: 236 LIGLRVT 242
L+GLR T
Sbjct: 445 LLGLRCT 451
>gi|145246060|ref|XP_001395279.1| DNA-directed polymerase kappa [Aspergillus niger CBS 513.88]
gi|134079991|emb|CAK48475.1| unnamed protein product [Aspergillus niger]
Length = 604
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 206 SASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ LP+RK+ G+G+V E L D GI TC ++ + ++L +F
Sbjct: 266 PNGQFCVPNEREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +ERTF +K KL IAE L D
Sbjct: 325 GEKAFHFLVQCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +R
Sbjct: 385 LARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMR 444
Query: 236 LIGLRVT 242
L+GLR T
Sbjct: 445 LLGLRCT 451
>gi|71022115|ref|XP_761288.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
gi|46097782|gb|EAK83015.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
Length = 682
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
ASLDEAYLDITE + S ++ ++LR V LT S G+APN +LAK+ SD NKP
Sbjct: 240 ASLDEAYLDITEYVEQNASSIDQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKP 299
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQF + DR ++ F+ +LP RKI GIG+V E IL + G+ TC E+ K L F
Sbjct: 300 DGQFRIQPDRKVIVDFMRNLPCRKIPGIGRVNERIL-ESLGVTTCGEIWDKRVELWLSFD 358
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
++ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 359 -GKIEWLIKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTKALLDLLKESAQRVEQDL 417
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 236
+ + +T+TL K +F+ +RA T + + +E++ S LL E+ +SLRL
Sbjct: 418 ARLDFKAKTITLVAKRDNFQRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRL 477
Query: 237 IGLRVTQF 244
IG+RVTQ
Sbjct: 478 IGVRVTQL 485
>gi|58261176|ref|XP_567998.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230080|gb|AAW46481.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 658
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 10/248 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M ASLDE YL+IT ++ E+ E+R V E+ LT SAG+A NR+LAK+CSD N
Sbjct: 310 MMASLDEGYLNITPYMSTHNMTASEVVTEIRAQVEEKTSLTISAGIAANRMLAKICSDKN 369
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNG F L DR ++ F+ LP+R I G G+VTE L + GI TC ++ +K L +
Sbjct: 370 KPNGHFELAFDRATIVRFMRDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLM 428
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
LG+ R R+S+ ERTF D + L +I E L
Sbjct: 429 DHWFGFRGLCRAYLGIADNTVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGK 488
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
D+ + G+T+T+K K TRA ++ KYISS+ DIL A LLK ELP+ +RL+G
Sbjct: 489 DLDRLQYAGKTVTVKYK-------TRAKSIPKYISSATDILPIAQELLKKELPLRIRLLG 541
Query: 239 LRVTQFNE 246
+R++ +
Sbjct: 542 VRLSTLKD 549
>gi|119178590|ref|XP_001240956.1| hypothetical protein CIMG_08119 [Coccidioides immitis RS]
gi|392867079|gb|EAS29729.2| DNA-directed polymerase kappa [Coccidioides immitis RS]
Length = 609
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NK
Sbjct: 201 SASIDEAYLNITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNK 260
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P+DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F
Sbjct: 261 PNGQFYVPSDRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLF 319
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T+ A R RKS+ +ERTF E A L KL A L D
Sbjct: 320 GQKAFQFLMQCYLGLGRTDIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERD 379
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLR 235
++ +GRTL LK+K +FE+ +R V K + ++D+ K+A LL E P + +R
Sbjct: 380 LRVAEFKGRTLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIR 439
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 440 LMGLRCTNL 448
>gi|350637497|gb|EHA25854.1| hypothetical protein ASPNIDRAFT_189582 [Aspergillus niger ATCC
1015]
Length = 604
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 206 SASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNK 265
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PN+R A+M F+ LP+RK+ G+G+V E L D GI +C ++ + ++L +F
Sbjct: 266 PNGQFCVPNEREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKSCGDIYPQRAILTKLF 324
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T P + RKS+ +ERTF +K KL IAE L D
Sbjct: 325 GEKAFHFLVQCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKD 384
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +R
Sbjct: 385 LARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMR 444
Query: 236 LIGLRVT 242
L+GLR T
Sbjct: 445 LLGLRCT 451
>gi|426197178|gb|EKV47105.1| hypothetical protein AGABI2DRAFT_69121 [Agaricus bisporus var.
bisporus H97]
Length = 425
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 12/221 (5%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ A DE YL+IT C E +S + +E+R V+EE LT SAG+APN+ N
Sbjct: 209 LIAGCDEGYLNITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNK---------N 259
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF L DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + + +
Sbjct: 260 KPNGQFQLIPDRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALM 318
Query: 121 FSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
+ L LG+ S PQ RKSI SERTFS +D +L +KL IA L
Sbjct: 319 DKQFGLHYLLKTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELET 378
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 219
DM + G G+T+TLK K +++V TRA +L +Y+SS ED+
Sbjct: 379 DMARNGWAGKTITLKYKLDTYQVFTRAKSLDRYVSSKEDLF 419
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
Query: 26 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 85
+ ++RT ++E LT SAG+A NR+LAK+ SD NKP+GQF LP DR A++ F++++P R
Sbjct: 253 VVHQMRTRMHETTQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAAILAFLANMPTR 312
Query: 86 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 145
KI GIGKVTE ILR++ I C+ +LQ+ +LL +F+ + DFF+ LG+ S NT +
Sbjct: 313 KIPGIGKVTEQILREL-DITNCQALLQQRALLKLLFTPISFDFFMRSALGIASNNTRKRS 371
Query: 146 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 205
RKSI E TF L K + + DM+++ L GR++ LKLKT F+V+ R+
Sbjct: 372 ERKSIGHETTFRELNQVPDLEDKCLHLCHKTALDMERKALLGRSVCLKLKTVDFKVKQRS 431
Query: 206 VTLQKYISSSEDILKHASV-LLKAEL 230
V L + ++ E ++K A++ LL EL
Sbjct: 432 VLLPAH-TADEPVIKRAALGLLHREL 456
>gi|154322288|ref|XP_001560459.1| hypothetical protein BC1G_01291 [Botryotinia fuckeliana B05.10]
Length = 624
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C++ I E+LR V+E+ AK+CS+ NK
Sbjct: 196 SASIDEAYLNITEYCQKNDIDPEAAVEQLRREVHEKTK-------------AKICSNYNK 242
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+ + N+R+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F
Sbjct: 243 PNGQYRVANNRVEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLF 301
Query: 122 SHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T+ A RKS+ +E TF+ D L KL AE L D
Sbjct: 302 GEKAFIFLMQCYLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKD 361
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+Q+ +GRTL LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LR
Sbjct: 362 LQRTQFKGRTLVLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLR 421
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 422 LMGLRCTNL 430
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 151/253 (59%), Gaps = 17/253 (6%)
Query: 25 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 84
EI ELR V + GLTCSAG+APN ++AK+CSDINKPNGQF + N + AV+ F+ LPI
Sbjct: 255 EIVRELRFRVEQATGLTCSAGIAPNSMIAKICSDINKPNGQFRIANSKEAVLKFMRDLPI 314
Query: 85 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP-- 142
RK+ GIG VTE IL+ + + C ++ +K +++ +F+ + + FL + LG+ ++ T
Sbjct: 315 RKVSGIGAVTEAILKGI-EVEKCGDLYEKRAIISLLFTRCSYEHFLRIALGISTSYTSFV 373
Query: 143 ---QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTAS 198
+ RKSIS ERTF T D +LL + L + K +R G + T+K+K ++
Sbjct: 374 TSEKESRRKSISVERTFHPTGDISLLIEITESLCNELIESLSKRLIRGGYSATVKMKFST 433
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQ--FNEDKVRAPS 253
F+V TR V++ I ++ +++ EL LRL+G+R+++ F +DKV
Sbjct: 434 FDVITRCVSVDYVICDISHLMPLCERIIRNELREGNKQLRLLGVRLSRLLFIDDKVE--- 490
Query: 254 DPTQKTLTNFMTS 266
+ K+LT+F ++
Sbjct: 491 --SMKSLTSFWSN 501
>gi|391341271|ref|XP_003744954.1| PREDICTED: DNA polymerase kappa-like [Metaseiulus occidentalis]
Length = 601
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 25/298 (8%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 64
LDEA LDITE+CR + +I E+R V + GLTCSAG+ PN+++AK+ +D+NKPNG
Sbjct: 176 LDEAALDITELCRNPEKTPDQIVAEIRQDVRDTTGLTCSAGIGPNQMVAKMLADVNKPNG 235
Query: 65 QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 124
QF L + +FI +L +RKI G+G+V E +L + +N C +++ + + L FS +
Sbjct: 236 QFRLTTP-AEIESFIENLTVRKIFGVGQVQEKMLAALGCVN-CSDLIDQRAKLFLGFSDA 293
Query: 125 TADFFLSVGLGL--GSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
TA FL+ G+ G N + +R R+S S+E TF +++ L ++E LS D+
Sbjct: 294 TAKSFLAAAKGICDGLVNDSEISSRTRRSKSAETTFKDSDNVEFLTEVCHHLSERLSEDL 353
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRL 236
L+G+ +T+K KT+SF+V +R+V L+ S + I A+ +LK+ L LRL
Sbjct: 354 AISDLQGKLITVKFKTSSFDVFSRSVALELPTRSLKTISTQATRVLKSMLARNPGTKLRL 413
Query: 237 IGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKE 294
+G+R++ F E +D Q TL+ S A + + +CLI+ E
Sbjct: 414 LGVRMSSFQE------ADGKQATLSQLFKSTAAPPR---------DEPKTECLIEKSE 456
>gi|119616168|gb|EAW95762.1| polymerase (DNA directed) kappa, isoform CRA_a [Homo sapiens]
Length = 396
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 221 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 279
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 280 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 338
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 192
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 339 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 392
>gi|238506557|ref|XP_002384480.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
gi|220689193|gb|EED45544.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
Length = 573
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 144/247 (58%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E I + +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 174 SASIDEAYLNITAYCTENQIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNK 233
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PNDR A++ F+ LP+RK+ G+G+V E L D GI TC ++ + +LL +F
Sbjct: 234 PNGQFRVPNDRDAILEFMKDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLF 292
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T P + RKS+ +E TF+ K L KL IA+ L D
Sbjct: 293 GEKAFHFLAQCYLGLGRTKIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKD 352
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R K + ++D+ + + L+ E+P + LR
Sbjct: 353 LTRTEFKGRTLVLKVKLATFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLR 412
Query: 236 LIGLRVT 242
L+GLR T
Sbjct: 413 LLGLRCT 419
>gi|258577383|ref|XP_002542873.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903139|gb|EEP77540.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 601
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+ITE C + E ++LR ++ E +T SAG+A N +AK+ S+ NK
Sbjct: 201 SASIDEAYLNITEYCSTNNMGPEEAVQKLRDTIAAETNITVSAGIAANAKIAKIASNWNK 260
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +P++R A+M F++ +P+RK+ G+G+V E L D GI TC ++ ++L +F
Sbjct: 261 PNGQFYVPSERAAIMDFMAKIPVRKVNGVGRVFEREL-DALGIKTCRDIYPLRAMLAPLF 319
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F + LGLG T A R RKS+ +E TF E A L KL A L D
Sbjct: 320 GQKAFQFLMQCYLGLGRTTISPAEERQRKSVGTESTFRDLEGLANLQDKLKSTAVELEKD 379
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLR 235
++K +GRTL LK+K +FE+ +R K + ++++ ++A LL E P + +R
Sbjct: 380 LRKADCKGRTLVLKVKLHTFEIISRQAVTPKPVHLADELYRNALPLLTKIYKETPNLKIR 439
Query: 236 LIGLRVTQF 244
L+GLR T
Sbjct: 440 LMGLRCTHL 448
>gi|384497743|gb|EIE88234.1| hypothetical protein RO3G_12945 [Rhizopus delemar RA 99-880]
Length = 524
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 142/259 (54%), Gaps = 34/259 (13%)
Query: 1 MAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
M SLDEAYL++TE + E ++ E+ E++R ++E LT SA
Sbjct: 204 MPMSLDEAYLNLTEYLKKEPDLTPYELVEQIRREIFESTQLTASA--------------- 248
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
DR +++ F+ L +R+I G+G+VTE +L + G++TC ++ K ++L
Sbjct: 249 -----------DRTSIVNFVKDLKVRQIPGVGRVTERVL-ESLGVHTCGDIYPKRAILYK 296
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+ S F L +GLG+T RKS+ ERTF+ D A LY KL E+ E L D
Sbjct: 297 LLSPINFQFLLKCYMGLGTTMFNTESERKSVGVERTFTSLSDPAKLYEKLHELCEALEKD 356
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 239
+K G+ GR + +K+K SFEVR R+ TL Y+SS++DI K A LL E+P+ LRL+G+
Sbjct: 357 AEKAGVMGRNIGIKIKFVSFEVRIRSRTLPSYVSSAKDIEKVAKQLLANEMPMDLRLMGV 416
Query: 240 RVTQF------NEDKVRAP 252
R+ +E ++AP
Sbjct: 417 RLANLKPRGSNDESVLKAP 435
>gi|169785539|ref|XP_001827230.1| DNA-directed polymerase kappa [Aspergillus oryzae RIB40]
gi|83775978|dbj|BAE66097.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866150|gb|EIT75422.1| putative DNA damage inducible protein [Aspergillus oryzae 3.042]
Length = 604
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 144/247 (58%), Gaps = 7/247 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E I + +R V E+ ++ SAG+A N +AK+ S+ NK
Sbjct: 205 SASIDEAYLNITAYCTENQIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNK 264
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PNDR A++ F+ LP+RK+ G+G+V E L D GI TC ++ + +LL +F
Sbjct: 265 PNGQFRVPNDRDAILEFMKDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLF 323
Query: 122 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T P + RKS+ +E TF+ K L KL IA+ L D
Sbjct: 324 GEKAFHFLAQCYLGLGRTKIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKD 383
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K A+FEV +R K + ++D+ + + L+ E+P + LR
Sbjct: 384 LTRTEFKGRTLVLKVKLATFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLR 443
Query: 236 LIGLRVT 242
L+GLR T
Sbjct: 444 LLGLRCT 450
>gi|388856805|emb|CCF49592.1| related to DNA polymerase kappa [Ustilago hordei]
Length = 680
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 140/248 (56%), Gaps = 8/248 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
ASLDEAYLDITE + + ++ + LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 245 ASLDEAYLDITEYVEQHRGTIDQVVQHLRDQVRNETQLTVSVGIAPNTMLAKISSDRNKP 304
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQF + DR A++ + LP RKI GIG+V E IL + G+ TC E+ K L
Sbjct: 305 DGQFRVQPDRKAILDLMRHLPCRKIPGIGRVNERIL-ESLGVTTCGEIWNKRVQLWLALD 363
Query: 123 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + LG+G+T P R RKS+ E TFS T D L L E ++ + D+
Sbjct: 364 -GKIQWLIKAHLGIGNTLVEPSKREERKSVGREHTFSPTSDTQALLHFLKESSDRVQQDL 422
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 236
++ +G+T+TL K +F+ +RA T + ++ ++++ LL E+ P+SLRL
Sbjct: 423 ERLEFKGKTVTLIAKRENFQRFSRARTSTRPVNRAQELYDITRSLLLQEIEREGPLSLRL 482
Query: 237 IGLRVTQF 244
IG+RVT
Sbjct: 483 IGVRVTHL 490
>gi|56160432|gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens]
Length = 461
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 12/184 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE +LK A
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE---------RLKVAQ 455
Query: 199 FEVR 202
E R
Sbjct: 456 VEYR 459
>gi|30048187|gb|AAH50718.1| POLK protein [Homo sapiens]
Length = 472
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 186
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
>gi|56160428|gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens]
Length = 489
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 186
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
>gi|56160430|gb|AAV80829.1| polymerase kappa isoform 3 [Homo sapiens]
Length = 371
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 12/184 (6%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE +LK A
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE---------RLKVAQ 365
Query: 199 FEVR 202
E R
Sbjct: 366 VEYR 369
>gi|21750080|dbj|BAC03714.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R A M F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAGMDF 255
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 192
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 368
>gi|224060808|ref|XP_002300272.1| predicted protein [Populus trichocarpa]
gi|222847530|gb|EEE85077.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 23/208 (11%)
Query: 290 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE--------- 340
+++ E S S++ E +Y DP+ N+L DLN +C+ ++ + E EKIHE
Sbjct: 1 MNNMEGSFSIESHELQHYGIRDPLASNNLEDLNVHHCTSTDSV-EAEKIHEPSSNKIADK 59
Query: 341 -------NEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDD 393
EVSQ E + Q EG D + +V N+ SS QKD+ +W+DD
Sbjct: 60 VITKDMAGEVSQWKESGLSLPGQLEGGSPDRMNQV----IMHNEAVFSSEQKDELVWVDD 115
Query: 394 YKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHR 453
YKCSLCG EMPP F EERQEHSDFHLAERLQK+ES D R R+R V Q+DHI+S
Sbjct: 116 YKCSLCGIEMPPYFDEERQEHSDFHLAERLQKDESRIDSRTSALRQRSV--QKDHISSQS 173
Query: 454 KRKKQKLFEKEGTHIPIDMFFAKRNRNF 481
KRKK+K KEG H+ IDMFFAK N NF
Sbjct: 174 KRKKRKPSPKEGGHLSIDMFFAKSNLNF 201
>gi|255955303|ref|XP_002568404.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590115|emb|CAP96284.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 611
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 140/245 (57%), Gaps = 7/245 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C E + E+ +R + E ++ SAG+A N +AK+ S+INK
Sbjct: 204 SASIDEAYLNITAYCNENHLEPDEVVRRMRAEILETTKVSVSAGIAANAKIAKIASNINK 263
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQF +PNDR A+M F+ L +RK+ GIG+V E L + G+ C ++ +LL +F
Sbjct: 264 PNGQFQVPNDRDAIMEFMRDLSVRKVNGIGRVFERELESI-GVKKCGDIFPHRALLTKLF 322
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F LGLG T + RKS+S+E TF DK L KL A+ L D
Sbjct: 323 GEKAFQFLAQCYLGLGRTKMEPVETHERKSVSTETTFHEIGDKEELRAKLWWAAQELEKD 382
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 235
+ + +GRTL LK+K +FEV TR + +S ++D+ A + L+ ++P + LR
Sbjct: 383 LARTQFKGRTLVLKVKLHTFEVLTRQTAPPRAVSLAKDLYSFALPMLAKLERDIPDMKLR 442
Query: 236 LIGLR 240
L+GLR
Sbjct: 443 LLGLR 447
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 165/289 (57%), Gaps = 35/289 (12%)
Query: 4 SLDEAYLDITEVC---------RER---GISGIEIAEELRTSVYE-EAGLTCSAGVAPNR 50
SLDEAY+D+ ER ++G ++ +++R+ V E GLTCSAG+APN
Sbjct: 178 SLDEAYMDLAPYLALKLTRNWDHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNF 237
Query: 51 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 110
LL+K+ SD NKPNGQ ++P+D +++ F+ LP RK+ GIG+VT IL FGI T ++
Sbjct: 238 LLSKIASDRNKPNGQCLVPSDHESIIGFLHPLPTRKVSGIGRVTAKILSS-FGIATVADL 296
Query: 111 LQKGSLLCAVFSHSTADFFLSVGLGLGSTN--------TPQARFRKSISSERTFSVTEDK 162
++ SL+ +F ++A+F L +G ++ T +K IS ERTF+ E
Sbjct: 297 YRERSLVRFLFQEASAEFLLRASIGCSGSDERNADDVETDDGPGQKGISRERTFAAKESW 356
Query: 163 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK--YISSSEDILK 220
+ KL EIAE+LS+DM+ + + T+T+K+K SF+ +R+ +L + +I ++ D+
Sbjct: 357 TAINLKLEEIAELLSSDMKHKNIFAHTVTVKVKLRSFDCLSRSRSLGRGVFIQAAADLRP 416
Query: 221 HASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 263
A LL+ EL ++RL+G+R + F + D QK++ +
Sbjct: 417 IALDLLR-ELKDEFSGSFAVRLLGIRCSSFMGES----HDKAQKSIDTY 460
>gi|336371762|gb|EGO00102.1| hypothetical protein SERLA73DRAFT_53034 [Serpula lacrymans var.
lacrymans S7.3]
Length = 446
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 15/224 (6%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AA DE YL+IT C E + +E+R V++E LT SAG+APN+ N
Sbjct: 195 LAAGCDEGYLNITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNK---------N 245
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQF LP DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L +
Sbjct: 246 KPNGQFYLPFDRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLM 304
Query: 121 FSHSTADFFLSVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEM 175
F L + LG+ S P R + I+S RTFS D+ + KL E+A
Sbjct: 305 DKQFGLQFLLRIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAE 364
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 219
L D ++ G G+T+TLK K +++V TRA + ++IS+ +D L
Sbjct: 365 LEDDTERNGWTGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDL 408
>gi|145518886|ref|XP_001445315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412759|emb|CAK77918.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 169/335 (50%), Gaps = 21/335 (6%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+ LDEA LD+TE + + E +R ++ LT S GV PN+++AK+ S+INK
Sbjct: 178 SMGLDEANLDLTEYINNSQVDPATLCENIRKDIFIATQLTASCGVGPNKMIAKLASEINK 237
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNG V+ AV+ F+ LP+RKI GIG +TE IL + NTC+++ + L +F
Sbjct: 238 PNGLHVVEQSPTAVLGFLEKLPVRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYIIF 296
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ T ++ G+ + + SIS +RTFS + K+ IAE L+ DMQ
Sbjct: 297 TPKTFEYIFYSCWGVARNCHVEFEDQLSISCQRTFSSISTQKEFEDKVDYIAEKLAEDMQ 356
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLR 240
+E G LTL +KT FE+R +++ L +Y + ++ I + LLK +L +RL+GL+
Sbjct: 357 QEEKVGNHLTLIIKTCKFEIRNKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLK 416
Query: 241 VTQF-NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 299
+ NE +++ S T KK NSL + I + + K +S
Sbjct: 417 MGSLANEKQMQKQSIST------------YFKKQFDKSNSLENQIASN--LGSKSHQISE 462
Query: 300 DVSETNNYEFGDPVCDNSLPDL--NDENCSFSNKI 332
D N + P + S P++ DE + SN++
Sbjct: 463 DGDSINKVQLQQP--EQSKPEIISEDEASNISNQL 495
>gi|134115815|ref|XP_773621.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256247|gb|EAL18974.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 598
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 10/248 (4%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M ASLDE YL+IT ++ E+ E+R V E+ LT SAG+A NR+LAK
Sbjct: 184 MMASLDEGYLNITPYMSTHNMTASEVVTEIRAQVEEKTSLTISAGIAANRMLAK------ 237
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
PNG F L DR ++ F+ LP+R I G G+VTE L + GI TC ++ +K L +
Sbjct: 238 -PNGHFELAFDRATIVRFMRDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLM 295
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
LG+ R R+S+ ERTF D + L +I E L
Sbjct: 296 DHWFGFRGLCRAYLGIADNTVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGK 355
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 238
D+ + G+T+T+K K ++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G
Sbjct: 356 DLDRLQYAGKTVTVKYKLHTYENKTRAKSIPKYISSATDILPIAQELLKKELPLRIRLLG 415
Query: 239 LRVTQFNE 246
+R++ +
Sbjct: 416 VRLSTLKD 423
>gi|213408879|ref|XP_002175210.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
gi|212003257|gb|EEB08917.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
Length = 532
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 16/300 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAE--ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
AS+DEAYLD+T+ + A LR +V E+ G+T S G+ N +LAK+ S++
Sbjct: 208 ASVDEAYLDLTDYLTKHNEEETVEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMR 267
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKI--------GGIGKVTEHILRDVFGINTCEEMLQ 112
KPN QF + R A++ F+ +LP RK+ GIG+V E L + ++ C ++L+
Sbjct: 268 KPNDQFSIGRTREAILEFMDTLPCRKVYLELNHNVNGIGRVLEQELSSL-NVHNCGDILR 326
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSV-TEDKALLYRKL 169
+ L VF + LS LG+ + A RKSI +E TFS+ + + +KL
Sbjct: 327 RKGYLYYVFQEKSFQNLLSYALGISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKL 386
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 229
++ +S M++ L G ++ LKLKT SFEVRTR L Y + S+ I K+ LL E
Sbjct: 387 KQLCFSVSETMKQRNLVGNSVVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYE 446
Query: 230 LPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 289
LPV +RL+G+R+T+ + + S + T N + S+ ++ D S+ I ++CL
Sbjct: 447 LPVQVRLLGVRMTKLQDASIYEESKLS-FTKENGVQCPICSRYLINDACSVDKHI-EECL 504
>gi|145517234|ref|XP_001444500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411922|emb|CAK77103.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 3/257 (1%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+ LDEA LD+TE + E +R + LT S GV PN+++AK+ S+INK
Sbjct: 178 SMGLDEANLDLTEYINNSQEDPAILCENIRKDILLATQLTASCGVGPNKMIAKLASEINK 237
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNG V+ AV+ F+ LPIRKI GIG +TE IL + NTC+++ + L +F
Sbjct: 238 PNGLHVVEQSATAVLNFLEKLPIRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYVIF 296
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ T ++ G+ + + SIS +RTFS + K+ IAE L+ +MQ
Sbjct: 297 TPKTFEYIFYSCWGVARNYHVEFEDQHSISCQRTFSSISTQREFEDKVDYIAEKLAEEMQ 356
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLR 240
E G LTL +KT+ FE+R++++ L +Y + ++ I + LLK +L +RL+GL+
Sbjct: 357 SEEKVGNHLTLIIKTSKFEIRSKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLK 416
Query: 241 VTQF-NEDKVRAPSDPT 256
++ NE +++ S T
Sbjct: 417 MSSLANEKQIQKQSIST 433
>gi|340505987|gb|EGR32239.1| hypothetical protein IMG5_090780 [Ichthyophthirius multifiliis]
Length = 490
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 5/203 (2%)
Query: 2 AASLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 57
LDEA LD+T+ + I E + ++R + +E GLTCS G+A N++LAK+CS
Sbjct: 210 GMGLDEANLDLTDYLKNNNIEKDEDIYDLCYQIRQKINKETGLTCSCGIAANKMLAKICS 269
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
D NKPNGQF L N+ + FI +L IRKI GIG VTE IL+ + GI C+++L+K + +
Sbjct: 270 DQNKPNGQFQLKNNAQEIKDFIGNLQIRKIPGIGNVTEQILKGI-GIEKCQDLLKKTADV 328
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
FS +T ++ + LG+G + + ++SIS RTF+ + + + K+ +A+ L+
Sbjct: 329 KISFSENTYEYLIFSALGIGRNEHTEEKEKQSISVSRTFTRIQGEEEIKEKICLLAQYLA 388
Query: 178 ADMQKEGLRGRTLTLKLKTASFE 200
D+ E + G+ +++ +K A FE
Sbjct: 389 EDVLYENVWGKNISVTVKNAKFE 411
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 149/258 (57%), Gaps = 13/258 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA E+R + ++ GL SAG++ N+ +AKV SDINKPN
Sbjct: 92 SLDEAYLDVTE-NKKGNPSATMIAREIREKIKQKTGLNASAGISVNKFIAKVASDINKPN 150
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVF 121
GQ V P + V+ F+ L IRK G+GKVT E + R GI T +++ K A
Sbjct: 151 GQKTVNPEE---VLDFLEQLEIRKFYGVGKVTAEKMYR--LGIFTGKDLKSKSEAYLADH 205
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
++ +V G+ + R RKS+ +ERTFS + + KL IAE + +
Sbjct: 206 FGKHGPYYYNVVRGIHESEVKPNRMRKSLGAERTFSENISSEIFMLEKLTNIAEEIERRL 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
QK + G+T+TLK+K + F ++TR+ T+ +ISS E IL+ A LL E + S+RL+G+
Sbjct: 266 QKSKVAGKTVTLKIKYSDFTLQTRSKTISYFISSKELILEMAKELLYQEKMKDSVRLLGI 325
Query: 240 RVTQFNEDKVRAPSDPTQ 257
++ N D +PS T+
Sbjct: 326 SLSNLNTD---SPSVKTK 340
>gi|164660502|ref|XP_001731374.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
gi|159105274|gb|EDP44160.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
Length = 525
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 135/252 (53%), Gaps = 7/252 (2%)
Query: 4 SLDEAYLDITEVCRERGISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLDIT C E G + ++A +LR V GLT S G+APNRLLAK+ SD KP
Sbjct: 134 SLDEAYLDITSYCAEHGHAHPRDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKP 193
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG + + R + F+ L +RK+ GIG+V E +L+ I+TC ++ ++ L
Sbjct: 194 NGLWYVAPTRQDALAFMHDLSVRKVPGIGQVMERMLQ-AMSIHTCHDLWERRIELSLCID 252
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
++G+G P R+S+ E TF+ T D L+ KL E L D+
Sbjct: 253 SYRMLLASALGIGDAHVTLPARTARRSVGRELTFAPTSDPTHLHAKLRATCEQLERDLAT 312
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-----LPVSLRLI 237
RGRT++L K +FE TRA + +SS +D+ LL+ E +P+ LRLI
Sbjct: 313 LEYRGRTVSLVGKHDTFERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLI 372
Query: 238 GLRVTQFNEDKV 249
G+RV+ + +V
Sbjct: 373 GVRVSSLIDLQV 384
>gi|224006311|ref|XP_002292116.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972635|gb|EED90967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 444
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAY+DI + + ++ +R V GLTCSAG+A N LLAKV SD+NKPN
Sbjct: 238 SLDEAYMDIGPYLKILLSTAQQLLNSIRQRVKNATGLTCSAGLASNFLLAKVASDVNKPN 297
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + + ++ F + L IRKI GIG+VTE +LR V + T +++ + + +F
Sbjct: 298 GQCFVGSSEAEILAFANPLSIRKISGIGRVTEKMLRGVCEVETVKDLYDHRAEVYFLFKP 357
Query: 124 STADFFLSVGLGLGSTNT-PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
++A+ + +G T +A RK IS ERTFS T + L KL I + L D+++
Sbjct: 358 ASANLMMRASIGYAETGKHHEATTRKGISHERTFSPTSSWSDLCNKLETIVQALVHDLKQ 417
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQ 209
L+ +T+TLK+K A+F++ TRAVTL+
Sbjct: 418 RNLKPKTITLKVKLANFDILTRAVTLE 444
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 148/255 (58%), Gaps = 7/255 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-TNKKNNPSATLIAQEIRQRIFEETGLTASAGISVNKFVAKIASDFRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V F+ L +RK GIGKVT + ++ GI +++ +K
Sbjct: 151 GQTTITADE--VQDFLDVLDVRKFYGIGKVTAQKMYEL-GIFKGKDLREKSLAFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
++ +F + G+ R RKS+ +E TF+ + + L+ IAE ++ +Q+
Sbjct: 208 NSGLYFYELSRGIHRAEVQPFRIRKSVGAEHTFAENFTSEIYMEEALSAIAEDVARRLQR 267
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ + GRT+TLK+K + F V+TR+ TL ++ISS E+I+ +A LL E L S+RL+G+ V
Sbjct: 268 QEVAGRTITLKIKYSDFTVQTRSKTLAEFISSQEEIVLYARELLYQERLKESVRLLGISV 327
Query: 242 TQF-NEDKVRAPSDP 255
+ NE++ P P
Sbjct: 328 SHLNNEEREDTPKKP 342
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSASNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D V+ F+ L IRK G+GKVT + + GI T +++ +K L F
Sbjct: 165 GQKTVEPDE--VIPFLEDLEIRKFYGVGKVTTQKMYSL-GIFTGKDLKEKSVEFLTENFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S A F+ +V G+ + R KS+ +ERTFS + + +L IA L ++
Sbjct: 222 KSGA-FYYNVVRGIHLSEVKPNRIPKSVGAERTFSENLSSEVFMLERLESIANELERRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F+++TR+ TL +I+ IL+ A LL E L S+RL+G+
Sbjct: 281 KSKIAGKTITLKIKYSDFKLQTRSKTLDYFIADKSLILETAKELLYQEKLENSVRLLGIS 340
Query: 241 VTQFNEDKVRAPSDPTQKTLT 261
+ N +K + P QK ++
Sbjct: 341 LANLNTEK-KKKETPIQKEVS 360
>gi|403343212|gb|EJY70929.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 839
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 8/249 (3%)
Query: 2 AASLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 57
+ LDEA +D+TE + + +E + ++R+ +YE LT S G+A N+LLAK+CS
Sbjct: 317 SQGLDEASIDVTEFLKSNNMDNMEGKIFLGSKIRSQIYESTELTASCGIACNKLLAKICS 376
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
+ KPNG L D+ + F+++LPI K+ GIGKV + +L + G+ C++M++K + +
Sbjct: 377 GLKKPNGMTYLDFDQDEITNFMNNLPINKLMGIGKVHQRVLTGL-GVKMCQDMIEKATEI 435
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
++ S FF+ LG+ N + +KSI +T +K ++ +A L
Sbjct: 436 YVNYNESQFQFFMRSALGI-DRNYHEDTVQKSIGVSQTIKPIHEKKEHDDRVRAMAIELY 494
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
+++ L +TLTL+LKT F ++ R+ YI DI++ + LL PV +R
Sbjct: 495 ERLKESELMAKTLTLELKTVRFNIKQRSTNFHTYIWEKSDIVRASEELLNVMWPVGEPVR 554
Query: 236 LIGLRVTQF 244
LIG+R+ Q
Sbjct: 555 LIGIRLMQL 563
>gi|63054412|ref|NP_587767.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe 972h-]
gi|74626930|sp|O74944.3|POLK_SCHPO RecName: Full=DNA polymerase kappa; AltName: Full=Meiotically
up-regulated gene 40 protein
gi|51950409|emb|CAA19259.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe]
Length = 547
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 147/250 (58%), Gaps = 9/250 (3%)
Query: 3 ASLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 57
AS+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S
Sbjct: 223 ASIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIAS 282
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
+ KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 283 NKRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVIL 341
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAE 174
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 342 SYIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQ 401
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL 234
+S ++QK GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++
Sbjct: 402 NVSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTI 461
Query: 235 RLIGLRVTQF 244
RL+G+R T+
Sbjct: 462 RLLGVRATKL 471
>gi|170092351|ref|XP_001877397.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647256|gb|EDR11500.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 420
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 122/218 (55%), Gaps = 12/218 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
A DEAYL+ITE G++ +E+R +V+ LT SAG+APN+ NKP
Sbjct: 198 AGSDEAYLNITEYSVRHGLTAEVCVQEMRKAVHAITQLTVSAGIAPNK---------NKP 248
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF +P D ++ F+ L IRK+ GIG+V E +L + GI TC ++ ++ +
Sbjct: 249 NGQFQIPFDSASIKAFMHHLSIRKVPGIGRVNERLLESI-GIKTCGDIYMHRVVISVMDK 307
Query: 123 HSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
F L LG+ S P R RKSI +ERTFS DK + +KL EIA L DM
Sbjct: 308 RFGLKFLLQTHLGIASNIVEPHLREERKSIGAERTFSSLGDKEKILQKLQEIAAELEKDM 367
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 218
+ G GRT+TLK K +++V TRA T +Y+ + E++
Sbjct: 368 SRNGWTGRTVTLKYKLDTYQVFTRAKTFDRYVFTKEEL 405
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 151/258 (58%), Gaps = 10/258 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSASLIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V P D V+ F+ +L IRK G+GKVT + + GI T ++ K +
Sbjct: 165 GQKTVNPED---VLPFLEALDIRKFHGVGKVTAEKMYQL-GIFTGTDLKSKTIEFLSTHF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ ++ V G+ ++ R RKS+++ERTFS + + KL IAE +S ++
Sbjct: 221 GKSGGYYYHVVRGVHTSEVKPNRIRKSLAAERTFSENLSSEIFMLEKLQHIAEEVSRRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F ++TR+ T+ Y+S + I++ A LL + + S+RL+G+
Sbjct: 281 KSDVAGKTITLKIKYSDFTLQTRSKTVPYYVSETSIIMETAKDLLYQDSMQNSVRLLGIS 340
Query: 241 VTQFNEDKVRAPSDPTQK 258
++ N +K + PT K
Sbjct: 341 LSNLNTEKPK--KKPTSK 356
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 146/247 (59%), Gaps = 8/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI + +K
Sbjct: 151 GQTTITESE--VQNFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRNLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
++ +++ + G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ +
Sbjct: 208 NSGNYYYELARGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVARRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGIS 326
Query: 241 VTQFNED 247
++ N +
Sbjct: 327 LSHLNNE 333
>gi|403377409|gb|EJY88700.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 759
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 9/271 (3%)
Query: 2 AASLDEAYLDITEVC---RERGISG-IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 57
A LDE +D+TE R+ G I +A ++R + ++ +T S G+A N++LAK+CS
Sbjct: 280 AVGLDEVNMDVTEYLIQHRQDNQEGRINLATKIRKEIQQQTRMTASCGIACNKMLAKICS 339
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
D+NKPNGQ L N ++ F+ LP+RK+ G+GKV E IL + I TC +++ K +
Sbjct: 340 DMNKPNGQTYLHNSERDILEFMKELPVRKLVGVGKVNEQILLGM-NIKTCSDVIDKAVDI 398
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
F+ + DF + +G+ +A +KS++ +TF V + + KL E+ E L
Sbjct: 399 YINFTENAFDFLVKSAIGIARNTHEEAGIKKSLNISQTFQVLSEFIQIKAKLEELCEELE 458
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRL 236
+ E L GRTLTL+ K F+ + R+ T +YI ED+ K A LL+ P+ R
Sbjct: 459 QRAKHEKLSGRTLTLEFKNDKFKNKQRSYTQNQYIWKKEDLFKIALSLLQDAWPLEPTRQ 518
Query: 237 IGLRVTQFNEDKVRAPSDPTQKTLTNFMTSG 267
I +++ DK + + T+ N T G
Sbjct: 519 ISVKLLNLKNDKGQLSATATE---VNHTTGG 546
>gi|358060315|dbj|GAA94069.1| hypothetical protein E5Q_00716 [Mixia osmundae IAM 14324]
Length = 664
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 138/266 (51%), Gaps = 25/266 (9%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
ASLDEAYL+IT R G+S + ++RT + E GLT SAG+APN LLAK+ +D+NKP
Sbjct: 229 ASLDEAYLNITVFMRSSGLSADDAVMQMRTEIKETTGLTVSAGIAPNTLLAKMAADVNKP 288
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQ + R AV+ F S+ P+RKI G+G+VTE L + ++ K +L + +
Sbjct: 289 DGQCRVMPTRDAVVEFTSAQPVRKIFGVGRVTEAWLV-ALDVRRISDIWAKRGMLHLIRT 347
Query: 123 HSTADFFLSVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ DF L LGLGS+ + RKS+ E TF D + L +AE L D
Sbjct: 348 SISLDFLLKAYLGLGSSLVSASTRESRKSVGREDTFGKLADYSGFLEVLRALAETLGNDC 407
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKY--ISSSEDILKHASVLL------------ 226
Q GRTLTLK K +++E TRA T+ ++ +E K LL
Sbjct: 408 QSLQFAGRTLTLKFKLSTYEPFTRARTIGQHHLYRDTEQFYKVGKELLDEAITERRKLYD 467
Query: 227 KAELPVS--------LRLIGLRVTQF 244
+ PV LRL+GLR+T
Sbjct: 468 DGKTPVGCGGTREIELRLLGLRITNL 493
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 152/256 (59%), Gaps = 12/256 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-VNKKSNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI +++ +K
Sbjct: 151 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
++ ++ + G+ + R RKS+ +E TF ++T + +L R+L IAE ++ +
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFVENLTSEVYML-RELDHIAEDVARRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGIS 326
Query: 241 VTQFN----EDKVRAP 252
++ N +++V+ P
Sbjct: 327 LSHLNNEPEKEEVKKP 342
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 146/247 (59%), Gaps = 8/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-VNKKSNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI ++ +K
Sbjct: 151 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
++ ++ + G+ + R RKS+ +E TF ++T + +L R+L IAE ++ +
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFPENLTSEVYML-RELDHIAEDVARRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGIS 326
Query: 241 VTQFNED 247
++ N +
Sbjct: 327 LSHLNNE 333
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 146/247 (59%), Gaps = 12/247 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S IA+E+R ++E+ GLT SAG++ N+ LAKV SDINKP
Sbjct: 105 SLDEAYLDVTE--NKKGMESANLIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
NGQ + D+M F+ LP+ K G+GKVT + + + GI ++ L+K SL L +
Sbjct: 163 NGQKTIHPDKME--EFLEELPVEKFYGVGKVTANKMFSL-GIYKGKD-LKKKSLEDLIRI 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSAD 179
F S ++ +V G+ ++ R +KS++ ERT F D+ + KL +A+ L
Sbjct: 219 FGKSGQHYY-NVVRGIHTSEVKPHRIQKSVAVERTFFEDLLDEQQINEKLESLAQELHQR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
+QK + GRTLTLK+K F + TR++T ++Y SS E L + ++RL+G
Sbjct: 278 LQKNNILGRTLTLKIKYKDFSLFTRSITKEEYFSSPEQYFTTGKKLWELRPFDKAVRLLG 337
Query: 239 LRVTQFN 245
L ++ N
Sbjct: 338 LSLSHLN 344
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 152/256 (59%), Gaps = 12/256 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+
Sbjct: 101 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPD 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI ++ +K
Sbjct: 160 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
++ +++ + G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ +
Sbjct: 217 NSGNYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLD 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 276 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGIS 335
Query: 241 VTQFN----EDKVRAP 252
++ N +++V+ P
Sbjct: 336 LSHLNNEPEKEEVKKP 351
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 144/246 (58%), Gaps = 6/246 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPN
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFNEIGLTASAGISVNKFIAKIASDYHKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + + V F+ L +RK GIGKVT + + GI +++ +K
Sbjct: 151 GQTTI--TQAEVQDFLDKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
++ ++ + G+ + R RKS+ +E TF+ + + R+L IAE + ++K
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLEK 267
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ + G+T+TLK+K + F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V
Sbjct: 268 QQVAGKTITLKIKYSDFTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISV 327
Query: 242 TQFNED 247
+ N +
Sbjct: 328 SHLNNE 333
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 152/248 (61%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + S IA+E+R +++ E GLT SAG++ N+ +AK+ SD+NKPN
Sbjct: 92 SLDEAYLDVTH-NKVGNPSATLIAQEIRQAIFAETGLTASAGISINKFIAKIASDVNKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D + F+ +L ++K GIGKVT + G+ T +++ QK + L F
Sbjct: 151 GQKTVTQDE--IQDFLDALNVKKFYGIGKVTAEKMY-ALGVFTGKDLRQKSLAFLERNFG 207
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+S ++ + G+ + R RKS+ +E+TF+ +T + +L ++L IA ++ +
Sbjct: 208 NSGKHYY-QLARGIHNGEVQPFRIRKSVGAEQTFAENLTSEIYML-KELDSIASEVAMRL 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
++ + G+TLT+K+K + F ++TR+ TL+ YISS E+I+ + S LL + L S+RL+G+
Sbjct: 266 AQQKVAGKTLTIKIKYSDFSIQTRSKTLKDYISSKEEIMLYISELLYQDRLSDSVRLLGI 325
Query: 240 RVTQFNED 247
++ N D
Sbjct: 326 SLSHLNND 333
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 152/256 (59%), Gaps = 12/256 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPD 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI ++ +K
Sbjct: 151 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
++ +++ + G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ +
Sbjct: 208 NSGNYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGIS 326
Query: 241 VTQFN----EDKVRAP 252
++ N +++V+ P
Sbjct: 327 LSHLNNEPEKEEVKKP 342
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 144/246 (58%), Gaps = 6/246 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPN
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFNETGLTASAGISINKFIAKIASDYHKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + + V F+ L +RK GIGKVT + + GI +++ +K
Sbjct: 151 GQTTI--TQAEVQDFLDKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
++ ++ + G+ + R RKS+ +E TF+ + + R+L IAE + ++K
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLKK 267
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ + G+T+TLK+K + F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V
Sbjct: 268 QQVAGKTITLKIKYSDFTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISV 327
Query: 242 TQFNED 247
+ N +
Sbjct: 328 SHLNNE 333
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 145/247 (58%), Gaps = 8/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI ++ +K
Sbjct: 151 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
++ ++ + G+ + R RKS+ +E TF+ +T + +L R+L IAE + +
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGIS 326
Query: 241 VTQFNED 247
++ N +
Sbjct: 327 LSHLNNE 333
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 11/256 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R + E+ GL SAG++ N+ +AKV SD+NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V P + V+ F+ +L IRK G+GKVT + + GI T ++ K L F
Sbjct: 165 GQKTVNPEE---VLPFLEALDIRKFYGVGKVTAEKMYQL-GIFTGNDLKSKSLEFLQEKF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S + + +V G+ + R RKS+ +ERTFS + + +L IAE + +
Sbjct: 221 GKS-GNHYYNVVRGIHLSEVKPHRIRKSLGAERTFSENISSEIFMLERLENIAEEIERRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+K + G+T+TLK+K + F ++TR+ TL YI S E I + A LL E + S+RL+G+
Sbjct: 280 KKSNVAGKTVTLKIKYSDFTLKTRSKTLPYYIRSKEVIYETAKELLYQEKMENSVRLLGI 339
Query: 240 RVTQFN-EDKVRAPSD 254
+ N EDK PS+
Sbjct: 340 TLANLNTEDKREKPSE 355
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 143/249 (57%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T +G+ S IA E+R + EE GLT SAG++ N+ +AKV SD NKP
Sbjct: 106 SLDEAYLDVT--ANRKGMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
NGQ +P + V F+ SL IRK G+GKVT + + GI T ++ Q L F
Sbjct: 164 NGQKTVPPE--DVQEFLESLEIRKFHGVGKVTAEKM-NALGIFTGADLRRQSEHFLTGHF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S ++ V G+ + +R KS+ +ERTFS + + KL +IAE LS +
Sbjct: 221 GKSGHHYYRVV-RGVHDSPVQPSRVPKSLGAERTFSENLSSEVFMVEKLTKIAEELSRRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGL 239
+ G+T+TLK++ + F ++TR+ TL +YI S E IL A +L + L S+RL+G+
Sbjct: 280 RTRNRSGKTITLKIRYSDFSLQTRSRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGI 339
Query: 240 RVTQFNEDK 248
++ + +K
Sbjct: 340 SLSNLDTEK 348
>gi|50838893|gb|AAT81654.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
Length = 291
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 79/87 (90%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 193 VATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDIN 252
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKI 87
KPNGQF+LPND+ AV TF+S+LPIRK+
Sbjct: 253 KPNGQFILPNDQEAVTTFVSTLPIRKV 279
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 153/261 (58%), Gaps = 13/261 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKP
Sbjct: 105 SLDEAYLDVTE--NKVGMPSATVIASWIRQRIKEKTGLNASAGISINKFIAKVASDINKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVF 121
NGQ +P + V+TF+ L IRK GIGK T + + GI T +M K L F
Sbjct: 163 NGQKTIPPEE--VITFLEELDIRKFYGIGKKTAEKMY-LHGIFTGMDMKMKSKEYLSDNF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 179
S A ++ + G+ + R RKS+++ERTFS +T + +L KL IAE +
Sbjct: 220 GKSGA-YYYDIVRGIQYSEVRPNRIRKSLAAERTFSENITSEIFML-EKLDIIAEEVEKR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
+ K + G+T+TLK+K + F ++TR+ TL+ Y+ S E IL+ A LL E + S+RL+G
Sbjct: 278 LAKSQVAGKTITLKIKYSDFTLQTRSKTLELYVRSKEIILETAKDLLYQEKMKNSVRLLG 337
Query: 239 LRVTQFN-EDKVRAPSDPTQK 258
+ ++ N ED+ + ++ K
Sbjct: 338 ISLSNLNTEDRKKKDAEKAVK 358
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVTK-NKKGNPSASLIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ +P + V+ F+ +L IRK G+GKVT + + GI T +++ K
Sbjct: 165 GQKTVPPEE--VLDFLEALDIRKFYGVGKVTAERMYQL-GIFTGKDLKTKDVDFLTEHFG 221
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
+ F+ +V G+ + R KS+ +ERTFS +T + +L KL IA L ++
Sbjct: 222 KSGKFYFNVVRGIHLSEVKPNRIAKSVGAERTFSDNLTSEIFML-EKLENIANELEKRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F +TR+ T+ +I+ IL+ A LL E L S+RL+G+
Sbjct: 281 KYAISGKTVTLKIKYSDFTTQTRSKTIAYFIADKSLILETAKELLYQEKLKDSVRLLGIS 340
Query: 241 VTQFNEDK 248
++ N DK
Sbjct: 341 LSNLNTDK 348
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 149/249 (59%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V + S +A E+R + + GL SAG++ N+ +AK+ SDINKPN
Sbjct: 106 SLDEAYLDVT-VNKFNYPSATILAREIREKIKDRTGLNASAGISINKFIAKIASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
GQ +P + V+ F+ +L IRK G+GKVT+ + + GI T ++ L+ L F
Sbjct: 165 GQKTIPPE--DVIDFLETLDIRKFHGVGKVTQEKMYGL-GIFTGVDLKLKTLEYLQDHFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S +F +V G+ ++ +R RKS+ +ERTFS + + KL +IAE + ++
Sbjct: 222 KSGLHYF-NVVRGVHLSDVKPSRIRKSLGAERTFSKNISSEIYMLEKLEDIAEEVERRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ G+T+TLKLKT+ F ++TR+ TL+ +ISS I++ LL E P+ S+RL+G+
Sbjct: 281 GSRVAGKTITLKLKTSDFNIQTRSKTLKFFISSKALIMEETKALLFQE-PIKDSIRLLGI 339
Query: 240 RVTQFNEDK 248
++ N DK
Sbjct: 340 SLSNLNTDK 348
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 145/247 (58%), Gaps = 8/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPN
Sbjct: 92 SLDEAYLDVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + V F+ L +RK GIGKVT + + GI ++ +K
Sbjct: 151 GQTTITE--AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFG 207
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
++ ++ + G+ + R RKS+ +E TF+ +T + +L R+L IAE + +
Sbjct: 208 NSGHYYYELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
K+ + G+T+TLK+K ++F V+TR+ TL+ +IS+ +DIL H LL E P S+RL+G+
Sbjct: 267 KQQVAGKTVTLKIKYSNFTVQTRSKTLKDFISNKDDILLHIKELLYQERPAESVRLLGIS 326
Query: 241 VTQFNED 247
++ N +
Sbjct: 327 LSHLNNE 333
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 145/259 (55%), Gaps = 32/259 (12%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ S IA+++R +++E GLT SAG++ N+ +AK+ SD NKP
Sbjct: 106 SLDEAYLDVTE--NKIGLPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKP 163
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQ V P D V+ F+ L IRK G+GKV T E+M QKG
Sbjct: 164 NGQKTVNPED---VLQFLEDLDIRKFYGVGKV------------TAEKMYQKGIFTGKDL 208
Query: 122 SHSTADF-----------FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKL 169
+AD+ + + G+ ++ R RKS+++ERTF + + KL
Sbjct: 209 KSKSADYLEKNFGKSGRSYYHIVRGIHNSKVKPNRIRKSLAAERTFRENLSSEIFMLEKL 268
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKA 228
+IAE +S + K + G+T+TLK+K + F ++TR+ TL Y+S +L+ A +L +
Sbjct: 269 RQIAEEVSKRLDKSKVAGKTITLKIKYSDFTLQTRSKTLPYYVSEKAIVLETAKDLLYQD 328
Query: 229 ELPVSLRLIGLRVTQFNED 247
+L S+RL+G+ ++ N D
Sbjct: 329 KLNNSVRLLGISLSNLNTD 347
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 151/250 (60%), Gaps = 10/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ +S IA E+R +Y+E GL SAG++ N+ +AKV SDINKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNLSASLIAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQ + + V+ F+++LP+ K G+GKVT + ++ GI T + L+K L L +F
Sbjct: 165 GQKTINPEE--VIEFLAALPVNKFYGVGKVTTAKMYNL-GIFTGND-LKKKPLEELMKLF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S A ++ + G+ ++ R RKSI++ERTFS + + +L +IAE L M
Sbjct: 221 GKSGAHYY-HIVRGIHNSAVKPNRIRKSIAAERTFSENISSEIFMIERLEQIAEELERRM 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
+K +G+T+TLK+K + F +TR+ T+ ++ + ++ S LL + ++ S+RL+GL
Sbjct: 280 KKTDTKGKTITLKIKYSDFTQQTRSKTMPHFMQAKKEFFPVVSELLYQQKITNSVRLLGL 339
Query: 240 RVTQFNEDKV 249
+ ++V
Sbjct: 340 SFGNLDTEEV 349
>gi|372208892|ref|ZP_09496694.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium S85]
Length = 348
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 143/248 (57%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA+E+R + E+ GL SAG+APN+ +AK+ SDINKPN
Sbjct: 92 SLDEAYLDVT-FNKKECPSATLIAQEIRIKIKEQTGLNASAGIAPNKFVAKIASDINKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ + D V+ F+ LPIRK G+G K TE + R GI T ++ K
Sbjct: 151 GQKTIAPDE--VIDFLEVLPIRKFYGVGKKTTEKMYR--LGIFTGADLKSKSIAFLEQHF 206
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
S A + S+ G+ ++ R RKS+ +E T+ ++T + +L KL +++ + +
Sbjct: 207 KSAAQHYYSIVRGIHNSPVKPFRTRKSVGAEHTYLENLTSEVFML-EKLQQLSREIEGRL 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
QK ++GRT+TLK+K + F TR+ TL ++S+ + I K LL + ++ S+RL+G+
Sbjct: 266 QKNQVKGRTVTLKIKYSDFSQTTRSKTLDTFVSTHQQIYKVIKELLYQQKVSNSVRLLGI 325
Query: 240 RVTQFNED 247
+ + +
Sbjct: 326 SINNLDNE 333
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 144/249 (57%), Gaps = 12/249 (4%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI+ IA+E+R ++EE L+ SAG++ N+ +AKV SDINKP
Sbjct: 106 SLDEAYLDVTE--NKKGIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKP 163
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
NGQ ++P+D V+ F+ +LPI+K GIG+ T ++ + GI+ ++ Q LL
Sbjct: 164 NGQKTIMPDD---VIPFLENLPIKKFYGIGEKTAEKMKKL-GIHFGRDLKQWDLPLLVRE 219
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSAD 179
F S ++ ++ GL + R RKSI +ERT F ++ L +L +I +L
Sbjct: 220 FGKSGTHYY-NIVRGLQKSTVKPDRIRKSIGAERTFFDDIHAESDLKEELEKIMTILHKR 278
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIG 238
++ G+T+TLKLK+ FE TR+ T YI+S E+I LL P +RL+G
Sbjct: 279 IESSEASGKTVTLKLKSFDFEQHTRSFTFDHYINSQEEIFDKIIQLLYQPFPEKPVRLLG 338
Query: 239 LRVTQFNED 247
+ ++ D
Sbjct: 339 ITLSNLKND 347
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 8/251 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S +A+E+RT ++ E GLT SAG++ N+ +AK+ SDINKPN
Sbjct: 106 SLDEAYLDVTQ-NKKGNPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D ++ F+ LPIRK G+GKVT + + GI T ++ K L F
Sbjct: 165 GQKTVNPDE--IIPFLEELPIRKFYGVGKVTTEKMYQL-GIFTGSDLKSKSLEFLEKHFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S A F+ SV G+ ++ R KS+++E TF V + + +L IA L ++
Sbjct: 222 KSGA-FYYSVVRGIHNSEVKPHRITKSVAAEHTFDVNLSSEIFMLEQLERIAVSLEKRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+ + G+T+TLK+K + F +TR+ TL +IS I++ LL E + S+RL+G+
Sbjct: 281 RHNVSGKTVTLKIKYSDFTQQTRSKTLPYFISDKSLIMEIVEELLYQEKMKNSVRLLGIS 340
Query: 241 VTQFNEDKVRA 251
++ N ++ +A
Sbjct: 341 LSNLNTEEKKA 351
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 8/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IAEE+RT ++ E GLT SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSASLIAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V P + V+ F+ +L IRK GIGKVT + GI T ++ K
Sbjct: 165 GQKTVNPEE---VLGFLEALDIRKFYGIGKVTAEKMYQK-GIFTGTDLKSKSLEFLEQNF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ ++ + G+ ++ R RKS+++ERTFS + + KL IAE +S +
Sbjct: 221 GKSGSYYYYIVRGIHNSEVKPNRIRKSLAAERTFSENLSSEIFMLEKLEHIAEEVSKRLI 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+ + G+T+TLK+K + F ++TR+ TL +IS +L+ A LL E + S+RL+G+
Sbjct: 281 RSKVAGKTVTLKIKYSDFTLQTRSKTLPYFISDKSVVLETAKELLYQEKMNNSVRLLGIS 340
Query: 241 VTQFN 245
++ N
Sbjct: 341 LSNLN 345
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 147/254 (57%), Gaps = 8/254 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R +Y+ GL SAG++ N+ +AKV SDINKPN
Sbjct: 106 SLDEAYLDVT-VNKKGNPSASLIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
GQ + + +++ F+ L IRK G+GKVT + + GI T +++ L+ L F
Sbjct: 165 GQKTVNPEEVSL--FLEELEIRKFYGVGKVTAEKMYKL-GIFTGKDLKLKTLEFLEGNFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ ++ +V G+ ++ R KS+ +ERTF+ + + +L IAE L ++
Sbjct: 222 KN-GSYYYNVVRGIHTSPVKPHRIPKSVGAERTFNENLSSEIFMLERLDHIAEELEKRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F + TR+ TL YISS IL+ A LL E L S+RL+G+
Sbjct: 281 KANIAGKTVTLKIKYSDFTLNTRSKTLAYYISSKSLILETAKELLYQEKLQNSVRLLGIS 340
Query: 241 VTQFNEDKVRAPSD 254
+ N +K +D
Sbjct: 341 LANLNTEKKEKTTD 354
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 148/255 (58%), Gaps = 8/255 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA E+RT + + GL SAG++ N+ +AK+ SDINKPN
Sbjct: 106 SLDEAYLDVTH-HKKGNPSASLIASEIRTEILKLTGLHASAGISINKFVAKIASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
GQ +P + V++F+ +L IRK GIGKVT + + GI T ++ L+ L F
Sbjct: 165 GQKTIPPEE--VLSFLENLDIRKFFGIGKVTADKMYGL-GIFTGADLKLKSEDFLETHFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S F+ +V G+ + R +KS+ +ERTF+ + L K+ +AE LS +
Sbjct: 222 KSGRYFYRAVR-GVHHSEVSPERIQKSVGAERTFNENISSEVFLEGKIIALAEELSKRLG 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+ L G+T+TLKLK A F +TR+ TL +I++ + I+ A+ LL E L S+RL+G+
Sbjct: 281 RSKLSGKTITLKLKYADFNTQTRSKTLPYFIANKDLIIAAATELLYQEVLSNSVRLLGIS 340
Query: 241 VTQFNEDKVRAPSDP 255
+ + N +K A P
Sbjct: 341 MGKLNNEKKEAIKGP 355
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 150/251 (59%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKP
Sbjct: 105 SLDEAYLDVTE--NKVGMPSATVIASWIRQCIKEKTGLNASAGISINKFIAKVASDINKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
NGQ +P + V+TF+ L I+K GIGK T + + GI T ++ L+ L F
Sbjct: 163 NGQKTIPPEE--VITFLEELDIKKFYGIGKKTAEKMY-LHGIFTGMDLKLKSKEYLSDNF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
S A ++ + G+ + R RKS+++ERTF ++T + +L KL IAE +
Sbjct: 220 GKSGA-YYYDIVRGIQHSEVKPNRIRKSLAAERTFRENITSEIFML-EKLEHIAEEVERR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
++K + G+T+TLK+K + F ++TR+ TL Y+ S E IL+ A LL E + S+RL+G
Sbjct: 278 LEKSKVAGKTITLKIKYSDFTLQTRSKTLDLYVRSKEIILETAKDLLYQEKMKNSVRLLG 337
Query: 239 LRVTQFN-EDK 248
+ ++ N ED+
Sbjct: 338 ISLSNLNTEDR 348
>gi|123425224|ref|XP_001306764.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121888356|gb|EAX93834.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 519
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 22/278 (7%)
Query: 6 DEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 65
DEA LDIT + + + ++A++++ V+++ LT S GVA L+K+ SDINKPNG
Sbjct: 190 DEATLDITPLLND-NLHSDQLAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGI 248
Query: 66 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 125
F++P + + +F+ +LP+RKI GIG V E IL+ + GI TC ++L K + + SH
Sbjct: 249 FIVPKNDDDLKSFLHTLPVRKIPGIGGVNEQILKGI-GIETCGDILLKKAEIWLTMSHKF 307
Query: 126 ADFFLSVGLGLGS---TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
F S +G+ + PQ +SIS +RT T+DK L + +A +S M+K
Sbjct: 308 CRFVFSAAVGVQPREYESGPQ----QSISKDRTIDATDDKCTLIDLVESLARKISKKMKK 363
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIG 238
+ R + +K K +F+V +++ T Y +S E L +AS+ L + E + LRL+G
Sbjct: 364 MRIACRNVAVKFKDINFKVISKSYTFD-YDTSDESDLVNASLKLLLEERQERSIKLRLVG 422
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFM---TSGHASKKI 273
++ T +P D Q ++ F+ T + KKI
Sbjct: 423 VKATNLT-----SPGDKKQSSIKKFLQEKTESSSPKKI 455
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 144/246 (58%), Gaps = 10/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R ++++ GLT SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVF 121
GQ V P + V+ F+ +L IRK G+GKVT E + R GI T ++ QK
Sbjct: 165 GQKTVNPEE---VIEFLENLDIRKFYGVGKVTAEKMYR--LGIFTGFDLKQKSVDFLEKH 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADM 180
+ ++ +V G+ ++ R KS+ +ERT F + + KL IA L +
Sbjct: 220 FGKSGSYYYNVVRGIHLSSVKPHRIPKSVGAERTFFENLSSEIFMLEKLENIASELEKRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
QK + G+T+TLK+K + F ++TR+ TL +I+S + IL+ A LL ++ L S+RL+G+
Sbjct: 280 QKSKIAGKTITLKIKYSDFTLQTRSKTLPYFIASKDLILETAKELLYQSSLENSVRLLGI 339
Query: 240 RVTQFN 245
+ N
Sbjct: 340 SLANLN 345
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 92 SLDEAYLDVTE-NKKGNPSATLIAQEIRKRIFEEVGLTASAGISANKFVAKIASDYNKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D + F+ L ++K G+GKVT + + GI T ++ QK L F
Sbjct: 151 GQKTVNPDE--IEPFLEKLDVKKFYGVGKVTAEKMYQL-GIFTGYDLKQKSVEYLENHFG 207
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+S +F + G+ ++ R KS+ +ERTF + + +L IA+ L +Q
Sbjct: 208 NSGLHYF-QIVRGIHNSAVKPNRKIKSVGAERTFGENLSSEIFMEERLQSIAKELEKRLQ 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F ++TR+ TL ++S I+ A LL E L S+RL+G+
Sbjct: 267 KSKISGKTITLKIKYSDFTLQTRSKTLPYFVSDKNIIVDVAKDLLYQERLKNSVRLLGIS 326
Query: 241 VTQF-NEDKVRAPSDPTQKTLT 261
V NE+K R P TQK+++
Sbjct: 327 VHNLNNEEKTRIPL--TQKSVS 346
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 146/249 (58%), Gaps = 12/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S EIA E+R +Y++ GL SAG++ N+ +AKV SDINKPN
Sbjct: 106 SLDEAYLDVTN-NKKNNPSANEIAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQ + + V+ F+ LP+ K G+GKVT + ++ GI + L+K SL L +F
Sbjct: 165 GQKTIHPEE--VIQFLEELPVNKFYGVGKVTAAKMYNL-GIFVGND-LKKRSLEELTQLF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
S ++ ++ G+ + R RKS+ +ERTF +++ + +L KL +IA+ +
Sbjct: 221 GKSGLHYY-NIVRGIHKSEVKPNRIRKSVGAERTFRENISSEIYML-DKLNDIADEIEKR 278
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
M K +G+T+TLK+K + F +TR+ T+ ++IS ++ LL E L S+RL+G
Sbjct: 279 MHKSNTKGKTITLKIKYSDFTQQTRSKTVGQFISKKKEFFPVVKELLYQEKLENSVRLLG 338
Query: 239 LRVTQFNED 247
L + N +
Sbjct: 339 LSFSNLNNN 347
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 147/248 (59%), Gaps = 14/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE +E S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPN
Sbjct: 105 SLDEAYLDVTENKKEIE-SANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQ + D+ + F+ LP+ K G+G+VT + + + GI ++ L+K +L L ++F
Sbjct: 164 GQKTIHPDK--IENFLEELPVEKFYGVGRVTANKMFTL-GIFKGKD-LKKKTLQELVSLF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADM 180
S ++ +V G+ ++ R +KS++ ERT F D+ + KL ++ L +
Sbjct: 220 GKS-GSYYYNVVRGIHNSEVKPHRIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRL 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED---ILKHASVLLKAELPVSLRLI 237
QK + GR LTLK+K F + TR++T ++Y +S+E+ I K L + PV RL+
Sbjct: 279 QKNNILGRALTLKIKYKDFSLFTRSITKEEYFTSAEEYFGISKKLWELRPFDKPV--RLL 336
Query: 238 GLRVTQFN 245
GL ++ N
Sbjct: 337 GLSLSHLN 344
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 151/256 (58%), Gaps = 12/256 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R + + GL SAG++ N+ +AKV SDINKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPN 164
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ + P + V+ F+ +L IRK GIGKVT + + GI T ++ K
Sbjct: 165 GQKTINPEE---VIPFLETLDIRKFYGIGKVTAEKMY-LHGIFTGNDLKSKSLEYLEEHF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ ++ + G+ ++ R RKS+ +ERTFS +T + ++ R L IAE + +
Sbjct: 221 GKSGTYYYHIVRGIHNSEVKPHRTRKSLGAERTFSENITSELFMMER-LEHIAEEIERRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
+K + G+T+TLK+K + F ++TR+ TL Y+ E IL+ A LL + ++ S+RL+G+
Sbjct: 280 EKSNVAGKTVTLKIKYSDFTLQTRSKTLPYYLRKKEVILETAKELLYQDDMKNSVRLLGI 339
Query: 240 RVTQFN-EDKVRA-PS 253
++ N ED+ +A PS
Sbjct: 340 SLSNLNTEDRPKAKPS 355
>gi|325266910|ref|ZP_08133581.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
gi|324981651|gb|EGC17292.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
Length = 355
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 138/248 (55%), Gaps = 9/248 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEAYLD++ + ++A ++R ++++ GLT SAG+APN+ LAKV SD KPN
Sbjct: 102 ALDEAYLDVSH-NKLSVPYATDVASQIRAQIFQQTGLTASAGIAPNKFLAKVASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFVLP ++A F+ LPI KI G+G+ T L FG T + +Q S + V
Sbjct: 161 GQFVLPPPKIA--AFLHGLPIEKIPGVGQKTAQKLHR-FGWKTAGD-VQAASRMQLVHLL 216
Query: 124 STADF-FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
+ F + G+ + +R R IS+E T + + L ++A +S MQ+
Sbjct: 217 GQWGYRFYDLVRGVDNRPVQPSRERVQISTEITVPDDLPREEIALHLPDLAHDISLQMQR 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLR 240
+ RG+T+TLKLKT+ F + TR+ T + +E +LK A LL+ ++P RLIG+
Sbjct: 277 KRTRGQTVTLKLKTSDFHIYTRSQTYSSPLPDAESLLKAACTLLQ-KMPGEPEYRLIGIG 335
Query: 241 VTQFNEDK 248
++ D+
Sbjct: 336 ISHLQPDR 343
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 146/249 (58%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IAEE+R + E+ GLT SAG++ N+ +AKV SD NKPN
Sbjct: 105 SLDEAYLDVTE-NKKGNPSASLIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPN 163
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V+P + V+ F+ +L I+K G+GKVT+ + GI T ++ K + L F
Sbjct: 164 GQKTVIPGE---VLDFLENLDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTQNF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S A +F V G+ ++ R RKSI +ERTF+ + + +L E+++ L +
Sbjct: 220 GKSGAHYFRIVR-GIHNSPVKPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRL 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
K + G+T+TLK+K + F + TR+ TL YIS + + + A LL + ++ S+RL+GL
Sbjct: 279 LKSKVAGKTITLKIKYSDFTLHTRSKTLSYYISDASLLFEVAKELLYQQKMENSVRLLGL 338
Query: 240 RVTQFNEDK 248
+ N K
Sbjct: 339 SLHNLNNTK 347
>gi|312069855|ref|XP_003137876.1| hypothetical protein LOAG_02290 [Loa loa]
Length = 650
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 38/244 (15%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G+ EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+
Sbjct: 259 GVDVDEIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFL 318
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+ T
Sbjct: 319 KDLPIRKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHT 377
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+S+ +E S+ D + G GRT+T+K+K ++F
Sbjct: 378 -------LESLCNELIDSL-------------------PDHRVRG--GRTVTVKMKFSTF 409
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQ--FNEDKVRA 251
+V TR ++ IS + + S ++ E+ LRL+G+R+ F +K+
Sbjct: 410 DVITRCCSVDYMISDVDRLFALCSKFVRREMHNDHGSDKYLRLLGVRLAHLVFENEKIE- 468
Query: 252 PSDP 255
PS+P
Sbjct: 469 PSNP 472
>gi|170588497|ref|XP_001899010.1| polk-prov protein [Brugia malayi]
gi|158593223|gb|EDP31818.1| polk-prov protein, putative [Brugia malayi]
Length = 358
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G+ E+ E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+R AV+TF+
Sbjct: 200 GVDIDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNEREAVLTFL 259
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIG V E +L+ + G+ C + ++ ++ +F+ + ++FL + LG+
Sbjct: 260 KDLPIRKISGIGPVMEAVLKGI-GLEKCVDFYERRGIISLLFTQRSYEYFLRIALGISQV 318
Query: 140 -NTPQARFRKSISSERTFSVTEDKALL 165
+ Q RKSIS+ERTF T D L
Sbjct: 319 FSADQKMRRKSISTERTFHPTGDLGAL 345
>gi|402585023|gb|EJW78963.1| polymerase kappa isoform 9, partial [Wuchereria bancrofti]
Length = 301
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 8/168 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G+ E+ E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+R AV+TF+
Sbjct: 134 GVDVDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNEREAVLTFL 193
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIG V E +L+ + G+ C ++ ++ ++ +F + ++FL + LG+
Sbjct: 194 KDLPIRKISGIGPVMEAVLKGI-GLEKCADLYERRGIISLLFPQRSYEYFLRIALGISHV 252
Query: 140 NTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 186
+ + RKSIS+ERTF T D L + EML K L+
Sbjct: 253 FSADRKMKRKSISTERTFHPTGDLGAL------LEEMLCRYFFKSWLK 294
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 137/250 (54%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R SG IA LR +YEE GLT SAGV P + +AKV SD++KP+
Sbjct: 118 SLDEAYLDVTEPKTGRP-SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ D M FI+ LPI K GIG VT +++ GI T ++ +
Sbjct: 177 GLTVVRPDEQ--MEFIAQLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFG 233
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADM 180
F ++ +G R RKS+ +ERTF ED A + +L+ IAE ++ +
Sbjct: 234 KRGRHFKTLAVGTDDRPVQPDRDRKSVGAERTFP--EDIARAETMLERLSPIAERVAQRL 291
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
++ +GRT+TLKLK+ +V TR T+ + + + + ++ LL+ P+ +RL+G
Sbjct: 292 RQANRKGRTVTLKLKSHDHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPLDEPVRLLG 351
Query: 239 LRVTQFNEDK 248
+ V+ E++
Sbjct: 352 ISVSSLTEEE 361
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 144/251 (57%), Gaps = 8/251 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S +A+E+RT ++ E GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTK-NKKGNPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D V F+ LPIRK G+GKVT + + GI T ++ K L F
Sbjct: 165 GQKTVNPDE--VEAFLEDLPIRKFYGVGKVTTEKMYQL-GIFTGTDLKSKSLEFLEKHFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S A F+ V G+ ++ +R KS+++E TF V + + +L IA L ++
Sbjct: 222 KSGA-FYYHVVRGIHNSEVKSSRIAKSVAAEHTFDVNLSSEIFMMEQLERIASSLEKRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+ + G+T+TLK+K + F +TR+ TL +IS I+++ LL E + S+RL+G+
Sbjct: 281 RYNVSGKTITLKIKYSDFSQQTRSKTLPYFISDKSLIMENVEELLYQEKMKDSVRLLGIS 340
Query: 241 VTQFNEDKVRA 251
++ N + +A
Sbjct: 341 LSNLNTEVKKA 351
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 14/232 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++GI S I IA ++R + E+ L SAGV+ N+ LAK+ SD+NKP
Sbjct: 108 SLDEAFLDVTE--NKKGINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKP 165
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
NGQ ++LP D F+ LPI K GIGKVT ++ + GI+ ++ Q L
Sbjct: 166 NGQAYILPED---AEEFLEKLPIGKFFGIGKVTAEKMQKI-GIHNGADLKQFSLQFLSKK 221
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSA 178
F S +F ++ G+ + R RKS+S+E TF V T D+ LL KL I E +
Sbjct: 222 FGKSGLHYF-NIVRGIHLSEVQPHRVRKSLSAENTFEVDLTTDEELL-NKLQPIYEEVIR 279
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
+ K G++GRT+TLKLK + F ++TR+ TL++Y E I + A LL+ E+
Sbjct: 280 RLDKSGIKGRTVTLKLKYSDFSLQTRSKTLEQY-PDKEMIWEIAKELLEQEV 330
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA E+R + E GL SAG++ N+ +AKV SDINKPN
Sbjct: 107 SLDEAYLDVTE-NKKGNPSASLIALEIRQKIKERTGLNASAGISINKFIAKVASDINKPN 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +P + V+ F+ L I+K G+GKV E + R GI T ++ K L F
Sbjct: 166 GQKTVPPEE--VIPFLEVLDIKKFYGVGKVMKEKMYRH--GIYTGLDLKGKSIEFLSENF 221
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S A ++ ++ G+ ++ +R RKS+++ERTFS + + KLA I+E + +
Sbjct: 222 GKSGA-YYYNIVRGIHNSEVKPSRTRKSLAAERTFSENIASEIFMLEKLAPISEEVERRL 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+K + G+T+TLK+K + F ++TR+ TL YIS I++ + LL E + S+RL+G+
Sbjct: 281 KKSKVAGKTVTLKIKYSDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGI 340
Query: 240 RVTQFNEDK 248
++ N +K
Sbjct: 341 SMSNLNNEK 349
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 8/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R +++E GL SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVT-VNKKGNPSASLIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V P + V+ F+ L IRK G+GKVT + + GI T ++ QK +
Sbjct: 165 GQKTVNPEE---VIEFLEKLEIRKFYGVGKVTTEKMYKL-GIFTGFDLKQKSEIFLTENF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ ++ V G+ ++ R KS+ +ERTFS + + +L IA L ++
Sbjct: 221 GKSGGYYYHVVRGVHNSAVKPHRIPKSVGAERTFSENLSSEIFMLERLEHIATELERRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F ++TR+ TL+ YI+ IL+ A LL E L S+RL+G+
Sbjct: 281 KSTISGKTITLKIKYSDFTLQTRSKTLRYYIADKHLILETAKELLYQEKLENSVRLLGIS 340
Query: 241 VTQFN 245
+ N
Sbjct: 341 LANLN 345
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPN
Sbjct: 103 SLDEAFLDVTE-NKVNNPSATLIAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPN 161
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +LP + A F+ LPI K GIGKVT ++ + GI+ ++ Q L F
Sbjct: 162 GQAVILPKEAEA---FLEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSLQYLTKKF 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S FF ++ G+ + R RKS+S+E TF D+ L EI E L +
Sbjct: 218 GKSGLHFF-NIVRGIHLSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRI 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+ G++GRT+TLK+K + F ++TR+ T ++Y + I + LL+ E L + +RL G+
Sbjct: 277 NRTGIKGRTVTLKIKYSDFTIQTRSKTFEQY-PEEQKIWETVMDLLQQETLALPVRLFGI 335
Query: 240 RVTQFN 245
++ N
Sbjct: 336 GLSNLN 341
>gi|358336666|dbj|GAA55127.1| DNA polymerase kappa subunit [Clonorchis sinensis]
Length = 822
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 29/239 (12%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G + E A E+R ++ LT SAG+ PN L AK+ SD KP+GQF + AV F+
Sbjct: 334 GTTAWEAAREIRFRIFCATRLTASAGLGPNTLTAKIASDWCKPSGQFEVARTSEAVTEFM 393
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG---- 135
LP+RK+ GIG VTE L + FGI TC ++++K +L + S S ++L + +G
Sbjct: 394 RQLPVRKVPGIGHVTERRL-EAFGIRTCRDLIEKRGILWNLSSRSAMGYYLRIAVGHSDD 452
Query: 136 ---------------------LGSTNTPQARF---RKSISSERTFSVTEDKALLYRKLAE 171
L ++ Q R RKS+S ERTF T + L + +
Sbjct: 453 DWLPCSSPEILTRPNGSNVLALSEADSNQGRSEVDRKSMSVERTFPDTSEPEALILRCRQ 512
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++ LS D+++E ++GR+LTLKLK +FE R+R+ L Y + +E I A+ +L+ E+
Sbjct: 513 LSAKLSEDLKEEHVKGRSLTLKLKLDTFENRSRSQMLPDYTNDAEIIATFATEILREEM 571
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ E E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTQNF-ENVPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + +M F+ SLP+ KI G+GKVT + + GI T ++ ++G LL
Sbjct: 161 GQFVLPPQK--IMAFLESLPLGKIPGVGKVTLKKM-NALGIQTAGDLRRFERGELLNHFG 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ + L+ G+ + R + IS+E T A + L +AE L ++
Sbjct: 218 RYGYRLYDLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQVSSHLPHLAEDLWRQIE 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIG 238
++ + + +TLKLKT F + TR++T + S +L+ A LL+ P + RLIG
Sbjct: 276 RKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIG 335
Query: 239 LRVTQF 244
+ V+
Sbjct: 336 IGVSHL 341
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 143/245 (58%), Gaps = 8/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 101 SLDEAYLDVTTNKKDLP-SATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ +P ++ F++ L I+K GIGKVT + GI T ++ K +
Sbjct: 160 GQKTVPPQE--ILDFLAPLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKSLEELQTYFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
+ ++F + G+ + R RKSI E TF ++T ++ L + L E+ E ++ ++
Sbjct: 217 NNGEYFYQIARGIHLSAVQPFRLRKSIGVEHTFETNITSER-FLEKPLKELCEEVALRLK 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
++ L +T+TLKLK + F+ +TR+ ++ ++I +S DI LL E L S+RL+G+
Sbjct: 276 EKKLLAKTVTLKLKYSDFKQQTRSRSIPEFIGNSTDIYAVVEELLYQEKLYESVRLVGVS 335
Query: 241 VTQFN 245
++ FN
Sbjct: 336 LSHFN 340
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 14/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI S IA+E+R + E+ GL SAG++ N+ +AKV SDINKP
Sbjct: 106 SLDEAYLDVTE--NKKGIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKP 163
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCA 119
NGQ V P + V F+ L IRK G+GKVT E + R GI ++ K L
Sbjct: 164 NGQKTVNPEE---VEEFLEQLQIRKFYGVGKVTAEKMYR--LGIFKGIQLKDKSEEFLTE 218
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSA 178
F S ++ +V G+ ++ R RKS+ +ERTFS + + +L IAE +
Sbjct: 219 NFGKS-GKYYYNVVRGIHNSEVKADRIRKSLGAERTFSENIASEIFMMERLENIAEEIER 277
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLI 237
++ + G+T+TLK+K + F ++TR+ TL YI+S IL A +L + ++ S+RL+
Sbjct: 278 RLKGSKVAGKTVTLKIKYSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLL 337
Query: 238 GLRVTQFNEDK 248
G+ ++ N K
Sbjct: 338 GITLSNLNTGK 348
>gi|403376484|gb|EJY88222.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 1212
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 151/277 (54%), Gaps = 18/277 (6%)
Query: 5 LDEAYLDITEVCRERGI----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
LDEA LDIT+ ++ G+ I +AE++R + + +T S G+A N++LAK+CS++N
Sbjct: 640 LDEANLDITDFLQKNGMDCPEGRIFVAEKIREQIKTKMQMTSSVGIASNKMLAKICSELN 699
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ L D + F+ + +R + G+G+V E +L + INTC+E+L+K + +
Sbjct: 700 KPNGQSYLAFDADKIEEFMRAKKVRDVPGVGRVHEQVLIGL-DINTCDEILKKAADIYIN 758
Query: 121 FSHSTADFFLSVGLGLG--STNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
F+ + +F + +G+ S + ++SIS ++F V K+ ++A L+
Sbjct: 759 FTETAFEFLVKAAMGISRCSHDDDSGNLAKRSISFSKSFKVISRFEQFKEKMDKLATNLA 818
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRL 236
+ + RTL+++ KT F ++ R++T ++I +DI+++A+ LL A PV R+
Sbjct: 819 EKCNEMKILARTLSIEFKTEKFMLKQRSLTFNQHICHKDDIMRYANELLNAVWPVEPCRM 878
Query: 237 IGLRVTQFNEDKVRAPSDPTQ------KTLTNFMTSG 267
+ L++ + R D T+ K L FM G
Sbjct: 879 MMLKLNNL---RNRTEKDSTESLLKDVKNLQFFMGKG 912
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 6/246 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + +G+ +AEE+R +++E GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTQNKKGNPSAGL-LAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V F+ LPIRK G+GKVT + + G+ T ++ K
Sbjct: 165 GQKTVNPDE--VNAFLEELPIRKFYGVGKVTTEKMYQL-GVFTGLDLKSKSVEFLEKHFG 221
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ +F+ +V G+ ++ R KS+++E TF V + + KL IA L + K
Sbjct: 222 KSGNFYFNVVRGIHNSEVKSDRITKSVAAEHTFDVNLSSEIFMLEKLEGIAIALERRLNK 281
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ G+T+TLK+K + F +TR+ T+ +IS IL+ LL E + S+RL+G+ +
Sbjct: 282 HKVAGKTITLKIKYSDFTQQTRSKTVPYFISDKGLILEIVKELLYQERMKDSVRLLGISL 341
Query: 242 TQFNED 247
+ N +
Sbjct: 342 SNLNTE 347
>gi|294901592|ref|XP_002777428.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239885064|gb|EER09244.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 496
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 179/369 (48%), Gaps = 59/369 (15%)
Query: 4 SLDEAYLDITEVCRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPNRL-L 52
SLDEAY+DIT E IS +E A L + + EE +GLTCSAG+A L
Sbjct: 111 SLDEAYIDITAKVAEAAMVDESISEVEAASLLVSRMREEVCENSSGLTCSAGIARGCFRL 170
Query: 53 AKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 112
AK+ SD+NKPNGQF++P ++ ++ S+PIRK+ G+G+V+E L GI+ +++
Sbjct: 171 AKMASDVNKPNGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVGDIII 230
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALLYRKL 169
K + L S S + + +G+ A KSIS ER+ S + + Y L
Sbjct: 231 KAAELLHAMSSSGGHWLIDAAMGVADMEDVTAAAESGPKSISQERSLSTAKSGSAAY--L 288
Query: 170 AEIAEMLSADM-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 224
E+ E L + + +KE GR +T+KLKT ++V+ ++ TL++ + S + AS
Sbjct: 289 HEVLEELCSQVMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYSAASE 347
Query: 225 LLK---AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLG 281
L+ A L +RL+G+RV+ F + P Q TL +F+ + AS V
Sbjct: 348 LMSTALATLKKPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRVA------ 396
Query: 282 SDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISE--VEKIH 339
D+C+ ++E G V N C+F NK ++ E H
Sbjct: 397 ---VDECIT-------------IESHEHGGIV-----EAWNCTVCTFLNKATDRRCEMCH 435
Query: 340 ENEVSQLLE 348
EN V + E
Sbjct: 436 ENRVGPVAE 444
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 11/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPN
Sbjct: 103 SLDEAFLDVTE-NKVGNPSATLIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPN 161
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +LP D +F+ LPI K GIGKVT ++ + GI+ ++ Q L F
Sbjct: 162 GQAVILPQD---AESFLEKLPIEKFFGIGKVTSEKMKSL-GIHNGYDLKQFSLQFLTKRF 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S F+ ++ G+ + R RKS+S+E TFS + + L+EI E L +
Sbjct: 218 GKSGLHFY-NIVRGIHLSEVQPNRIRKSLSAENTFSTDLKSEVEWLAALSEIFEELKRRV 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGL 239
+K G++GRT+TLK+K F ++TR+ T ++Y + I + LL+ E VS +RL G+
Sbjct: 277 EKSGIKGRTVTLKIKYHDFNIQTRSRTFEQYPEEGK-IWETVLELLRQEALVSPVRLFGI 335
Query: 240 RVTQFNEDKVRA 251
++ N ++ R
Sbjct: 336 GLSNLNVEEERV 347
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 142/250 (56%), Gaps = 6/250 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S +A+E+R ++ E G+T SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTQ-NKKGNPSASLLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V+ F+ LPIRK G+GKVT + + GI T ++ K
Sbjct: 165 GQKTVNPDE--VIPFLEELPIRKFYGVGKVTTEKMYQL-GIFTGLDLKSKSVEFLEKHFG 221
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ F+ +V G+ ++ +R KS+++E TF V + + +L +IA L ++K
Sbjct: 222 KSGGFYFNVVRGIHNSEVKASRITKSVAAEHTFDVNLSSEIFMLEQLEKIAVSLEKRLKK 281
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ G+T+TLK+K + F +TR+ TL +I+ IL+ LL E + S+RL+G+ +
Sbjct: 282 YNILGKTVTLKIKYSDFTQQTRSKTLPYFIADKSLILETVEELLYQERMKDSVRLLGISL 341
Query: 242 TQFNEDKVRA 251
N ++ +A
Sbjct: 342 NNLNTEQKKA 351
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPN
Sbjct: 103 SLDEAFLDVTE-NKVNNPSATLIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPN 161
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +LP + A F+ LPI K GIGKVT ++ + GI+ ++ Q L F
Sbjct: 162 GQAVILPKEAEA---FLEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSIQYLTKKF 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S FF ++ G+ + R RKS+S+E TF D+ L EI E L +
Sbjct: 218 GKSGLHFF-NIVRGIHLSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRI 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
+ G++GRT+TLK+K + F ++TR+ T ++Y + +L + L + +RL G+
Sbjct: 277 NRTGIKGRTVTLKIKYSDFTIQTRSKTFEQYPEEQKIWETVMDLLQQDALALPVRLFGIG 336
Query: 241 VTQFN 245
++ N
Sbjct: 337 LSNLN 341
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 139/250 (55%), Gaps = 8/250 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S IA E+R ++ E GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTQ-NKKNMSSATMIAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V PN+ V+ F+ LPI+K G+GKVT + + GI T ++ K
Sbjct: 165 GQKTVAPNE---VLLFLEQLPIKKFYGVGKVTTEKMYQL-GIFTGLDLKSKSLDFLEKHF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ F+ V G+ + R KS+++E TF + + + KL++IA L +Q
Sbjct: 221 GKSGTFYYHVVRGVHNGEVKANRIAKSVAAEHTFDINLTSEIFMLEKLSKIANELERRLQ 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K G+T+TLK+K + F +TR+ TL +IS + + A LL E L S+RL+G+
Sbjct: 281 KHQKAGKTVTLKIKYSDFTQQTRSKTLPYFISDKSLLFEFAKELLYQEKLKNSVRLLGIS 340
Query: 241 VTQFNEDKVR 250
++ N + +
Sbjct: 341 LSNLNTETTK 350
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 147/250 (58%), Gaps = 12/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+++R + E+ GL SAG++ N+ +AK+ SD+NKPN
Sbjct: 103 SLDEAYLDVTE-NKKGNPSATLIAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPN 161
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEM-LQKGSLLCAV 120
GQ V P + V+ F+ L IRK G+GKVT E + R GI T +++ L+ L
Sbjct: 162 GQKTVQPEE---VIAFLEELDIRKFYGVGKVTAEKMYR--LGIFTGKDLKLKSEEYLTEH 216
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F S F+ +V G+ + R RKS+ +ERTF+ + + +L IAE +
Sbjct: 217 FGKSGTHFY-NVVRGIHLSEVKPHRIRKSLGAERTFNENISSEIFMLERLENIAEEIERR 275
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
+ K + G+T+TLK+K + F +TR+ T+ YI++ + IL+ A LL E + S+RL+G
Sbjct: 276 LTKSKVAGKTITLKIKYSDFTQQTRSRTINFYIANKDLILEIAKELLYQEKMKNSVRLLG 335
Query: 239 LRVTQFNEDK 248
+ ++ N +K
Sbjct: 336 ISLSNLNTEK 345
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 136/250 (54%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R SG IA LR +YEE GLT SAGV P + +AKV SD++KP+
Sbjct: 118 SLDEAYLDVTEPKTGRP-SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ D M FI+ LPI K GIG VT +++ GI T ++ +
Sbjct: 177 GLTVVRPDEQ--MEFIAQLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFG 233
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADM 180
F ++ +G R RKS+ +ERTF ED A + +L+ IAE ++ +
Sbjct: 234 KRGRHFKTLAVGTDDRPVQPDRDRKSVGAERTFP--EDIARAETMLDRLSPIAERVAQRL 291
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
++ +GRT+TLKLK+ +V TR T+ + + + + ++ LL+ P +RL+G
Sbjct: 292 RQANRKGRTVTLKLKSHDHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLG 351
Query: 239 LRVTQFNEDK 248
+ V+ +++
Sbjct: 352 ISVSSLTDEE 361
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + + E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTQNFKNIPYAS-EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPPK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFG 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ + L+ G+ + R + IS+E T A L +AE L ++
Sbjct: 218 RYGYRLYDLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIE 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIG 238
++ + + +TLKLKT F + TR++T + S +L+ A LL+ P + RLIG
Sbjct: 276 RKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIG 335
Query: 239 LRVTQF 244
+ V+
Sbjct: 336 IGVSHL 341
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 143/249 (57%), Gaps = 12/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S IA ++R +YE GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 105 SLDEAYLDVTE-NKLNYPSATVIAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVT--EHILRDVF-GINTCEEMLQKGSLLCAV 120
GQ + + V+ F+ L IRK GIGKVT + L+ +F G + E L+ L
Sbjct: 164 GQKTITPEE--VIPFLEELEIRKFHGIGKVTAEKMYLQGIFTGAHLKERSLE---FLQEH 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F S A ++ ++ G+ + R RKS+ +ERTFS + + +L +IAE +
Sbjct: 219 FGKSGAHYY-NIVRGIHHSPVKPDRIRKSLGAERTFSENISSEIFMKERLTQIAEEIEKR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
+ K + G+T+TLK+K + F+ +TR+ TL +I + + IL A L++ E S+RL+G
Sbjct: 278 LAKNDVAGKTVTLKIKYSDFKTQTRSKTLPHFIRTKDLILATAIELMEQEGFRESVRLLG 337
Query: 239 LRVTQFNED 247
+ ++ N D
Sbjct: 338 ITLSNLNTD 346
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 9/256 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA ++R ++++ GL CSAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSATLIASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V+ F+ +L IRK G+GKVT + + GI T ++ +K
Sbjct: 165 GQKTVEPDE--VIPFLEALDIRKFYGVGKVTAQKMYQL-GIFTGLDLKKKPIEFLNEHFG 221
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ + +V G+ ++ R KS+ +ERTF+ + + +L ++ L ++K
Sbjct: 222 KSGSLYYNVVRGIHNSPVKPDRVPKSVGAERTFTENLSSEVFMLERLEHLSVELEQRLRK 281
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ G+T+TLK+K + F ++TR+ TL YIS IL A+ LL E L S+RL+G+ +
Sbjct: 282 NKVAGKTITLKIKYSDFSLQTRSKTLDFYISDKSLILDTATELLYQEKLHNSVRLLGISL 341
Query: 242 TQFNEDKVRAPSDPTQ 257
N D AP P Q
Sbjct: 342 GNLNTD---APEIPVQ 354
>gi|397573824|gb|EJK48893.1| hypothetical protein THAOC_32274, partial [Thalassiosira oceanica]
Length = 571
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 136/252 (53%), Gaps = 29/252 (11%)
Query: 30 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIG 88
+R V+ E GLTCSAG A N ++AK+ SD+NKPNGQ FV P++ + TF+S L +RK+
Sbjct: 290 IRKRVHRETGLTCSAGTASNFMIAKIASDMNKPNGQVFVGPSEE-EIRTFLSPLSVRKVC 348
Query: 89 GIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL----------GS 138
G+G++ E LR G+ T ++ K + + +F +TA F L V +G G
Sbjct: 349 GVGRILEKFLRATLGVVTVADLYAKRAEVNFLFKPATAQFLLRVSIGYSEDSRRESEGGE 408
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
++ RK +S ERTF T+ + L KL IA L+ D+Q +GL+ RT+ LK+K A+
Sbjct: 409 RGDDESAQRKGMSGERTFQPTDTWSDLCVKLESIATRLAKDIQSKGLKPRTIGLKVKLAN 468
Query: 199 FEVRTRAVTLQKYI------SSSEDILKHASVLL-----------KAELPVSLRLIGLRV 241
F + TR T Q + S++ ++ A LL K + +RL+G+R
Sbjct: 469 FNLLTRTNTRQVALFQQAGDGSTQTLVDIAVKLLRDVKRAFVEEHKDKAGFMVRLLGVRC 528
Query: 242 TQFNEDKVRAPS 253
+ F ++ PS
Sbjct: 529 SNFRLERETQPS 540
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 146/265 (55%), Gaps = 10/265 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S +A+E+R +Y E GLT SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVT-VNKKGNPSASLLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V P + V+ F+ L IRK G+GKVT + V GI T ++ K L F
Sbjct: 165 GQKTVNPEE---VLAFLEELEIRKFYGVGKVTAEKMYKV-GIFTGLDLKNKSLEFLEKHF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S A ++ V G+ ++ R KS+ +ERTF+ + + +L IA L +
Sbjct: 221 GKSGA-YYYHVVRGIHNSPVKPNRIPKSVGAERTFNENLSSEIFMLERLENIANELERRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+K + G+T+TLK+K + F ++TR+ T+ +I+ + IL+ A LL E L S+RL+G+
Sbjct: 280 KKSKIAGKTITLKIKYSDFTLQTRSKTIPYFIADKDLILEIAKELLYQEKLENSVRLLGI 339
Query: 240 RVTQFNEDKVRAPSDPTQKTLTNFM 264
+ N + P + FM
Sbjct: 340 SLANLNTPDKKKPEQESISVQLKFM 364
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IAE++R+ ++E+ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 101 SLDEAYLDVT-TNKKNLSSATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ +P + V++F+ L ++K GIGKVT + GI T ++ K +
Sbjct: 160 GQKTVPPSK--VLSFLEGLDVKKFYGIGKVTAEKMYQK-GIFTGADLRAKSLEELQSYFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
++ ++F + G+ + R KSI E TF + + L +++E +S + K
Sbjct: 217 NSGEYFYQIARGIHLSPVQPFRLIKSIGVEHTFEKNISSEIFMTEPLQQLSEEVSLRLSK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ L +T+TLKLK + F+++TR+ T+ ++I S I LL E L S+RL+G+ +
Sbjct: 277 KKLLAKTVTLKLKYSDFKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSL 336
Query: 242 TQFN----EDK 248
+ FN EDK
Sbjct: 337 SNFNYPIKEDK 347
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 135/246 (54%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ E E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTQNF-ENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPQK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFG 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ + L+ G+ + R + IS+E T A L +AE L ++
Sbjct: 218 RYGYRLYDLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIE 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIG 238
++ + + +TLKLKT F + TR++T + S +L+ A LL+ P + RLIG
Sbjct: 276 RKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIG 335
Query: 239 LRVTQF 244
+ V+
Sbjct: 336 IGVSHL 341
>gi|393909444|gb|EJD75452.1| CBR-POLK-1 protein [Loa loa]
Length = 414
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G+ EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+
Sbjct: 259 GVDVDEIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFL 318
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+
Sbjct: 319 KDLPIRKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHV 377
Query: 140 NTPQARF-RKSISSERTFSVTEDKALL 165
+ + RKSIS+ERTF T D L
Sbjct: 378 FSVDRKIRRKSISTERTFHPTGDLGAL 404
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S IA+E+R + ++ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVTQ-NKKGNPSATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V P + V+ F+S+L IRK G+GKVT + + GI T ++ +K L F
Sbjct: 165 GQKTVNPEE---VLEFLSALDIRKFYGVGKVTAEKMYQL-GIFTGADLKKKSLEFLNQEF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S ++ +V G+ + +R KS+ +ERTFS + + ++L IA+ L +
Sbjct: 221 GKSGQHYY-NVVRGIHLSTVKPSRTPKSVGAERTFSENLSSEIFMLQRLENIAQELEKRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
+K L G+T+TLK+K + F ++TR+ TL +I+ IL +A LL ++ L S+RL+G+
Sbjct: 280 KKSKLAGKTVTLKIKYSDFTLQTRSKTLPFFIADKSLILDNAKELLYQSPLENSVRLLGI 339
Query: 240 RVTQFNED 247
+ N +
Sbjct: 340 SLANLNTE 347
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + G+ + IA E+R + E GLT SAGV+ N+LLAK+ S+ KPN
Sbjct: 112 SLDEAFLDVTAATAD-GVLAVRIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPN 170
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G FV+P + + F++ LP+ K+ G+G T L GI+T ++ +L A F
Sbjct: 171 GLFVVPPEHG--LAFLAPLPVGKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFG 227
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ +F V G+ S +R RKS+ ERTF ED ++ L ++A +SA +Q
Sbjct: 228 KA-GLWFYEVARGIDSRPVQTSRQRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQ 286
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL------R 235
GL GRT+++K + FE TRA T + I +E I+ LL +P SL R
Sbjct: 287 ALGLAGRTVSIKARFPDFETVTRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVR 346
Query: 236 LIGLRVT 242
L+G+ V+
Sbjct: 347 LLGVTVS 353
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 8/252 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T+ + S IA E+R +YE LT SAG++ N+ LAK+ SD NKPN
Sbjct: 92 SLDEAFLDVTK-NKINCPSATLIAYEIRKKIYERLQLTASAGISINKFLAKIASDYNKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D V+ F+ +L I+K GIGK T + FGI T +++ +K L F
Sbjct: 151 GQKTINPDE--VIEFLENLEIKKFFGIGKKTAEKMYH-FGIFTGKDLKEKSLDFLVTHFG 207
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+ D++ ++ G+ + R KS+ +ERTF + L +L I E L ++
Sbjct: 208 KAGTDYY-NIVRGVHESPVQPNRKIKSVGTERTFDENLSSEVFLMERLDLIVEELGLRLK 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K+ + G+T+TLKLK + F +TR+ T+ YIS E IL LL E L S+RLIG+
Sbjct: 267 KQNVAGKTITLKLKYSDFSQQTRSATVPYYISDRELILDKVKELLYQEKLKDSVRLIGVA 326
Query: 241 VTQFNEDKVRAP 252
V+ N + + P
Sbjct: 327 VSNLNTEASKKP 338
>gi|154413235|ref|XP_001579648.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121913857|gb|EAY18662.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 592
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 4/253 (1%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
++ LDEA LD++E + ++IA+ ++ V+E+ LT S G+A LAK+ SD+N
Sbjct: 181 ISFGLDEASLDLSEHVKLDYEKAMDIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVN 240
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNG F + +DR + + FIS LPIRKI GIG V E +L + GI T ++++ K + L
Sbjct: 241 KPNGIFEIKHDRESTLDFISKLPIRKIPGIGGVAEQLLHGI-GITTMKDVMDKKTDLWIC 299
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
F S LG+ R ++SIS ERTF T D+ + + ++ + +
Sbjct: 300 MRPLFCQFIFSACLGINRQTFGVTRHQQSISKERTFDNTNDRVFMEEIIEKLCMEVCKLL 359
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLI 237
Q+ + R +T+K K +SF+ TR ++ + DI +L EL V RL+
Sbjct: 360 QEMNVLCRNVTVKFKDSSFQTITRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLL 419
Query: 238 GLRVTQFNEDKVR 250
G+R Q + + +
Sbjct: 420 GVRCGQLSTPRAK 432
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 15/243 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPN
Sbjct: 104 SLDEAYLDVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQFV+P +R F++SLP+ G+G T +R GI+T + L++ SL L F
Sbjct: 163 GQFVIPPNRGE--DFVASLPVNAFHGVGPATARRMR-TLGIHTGAD-LRRFSLDILRQHF 218
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
+ A ++ G+ G + P R RKS+ E TF A L+ L E+A + A
Sbjct: 219 GKAAAFYY---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWA 275
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
QK L GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL
Sbjct: 276 GCQKRNLTGRTITLKLRYTDFDQCTRSLSLADPVQDEEILAEMACRLLAPLLPVRAPVRL 335
Query: 237 IGL 239
+G+
Sbjct: 336 LGI 338
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 135/250 (54%), Gaps = 19/250 (7%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T R I E+A+ +R ++EE GLT SAG+APN+ LAK+ SD
Sbjct: 102 SLDEAYLDVT-----RNFENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDW 156
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLL 117
KPNGQFVLP + +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL
Sbjct: 157 RKPNGQFVLPPQK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELL 213
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
+ + L+ G+ + R + IS+E T A L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLW 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SL 234
++++ + + +TLKLKT F + TR++T + S +L+ A LL+ P +
Sbjct: 272 RQIERKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAF 331
Query: 235 RLIGLRVTQF 244
RLIG+ V+
Sbjct: 332 RLIGIGVSHL 341
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 140/246 (56%), Gaps = 10/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA E+R + + GL SAG++ N+ +AK+ SDINKPN
Sbjct: 92 SLDEAYLDVTE-NKKGNPSATLIAREIREKIKNKTGLNASAGISVNKFIAKIASDINKPN 150
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ + P D V+ F+ L +RK G+GKVT + + GI ++ QK L F
Sbjct: 151 GQKTINPED---VLEFLEKLQVRKFHGVGKVTAEKMYQL-GIFNGFDLKQKSLEFLIENF 206
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S ++ +V G+ + R RKS+ +ERTF + + +L IAE + +
Sbjct: 207 GKSGLHYY-NVVRGIHLSEVKPNRIRKSLGAERTFDTNISSEIFMLERLQNIAEEIERRL 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGL 239
QK + G+T+TLK+K + F TR+ TL +ISS + +L+ A +L + ++ S+RL+G+
Sbjct: 266 QKSKVAGKTVTLKIKYSDFTQHTRSKTLPYFISSKDLVLECAKELLFQEKMKESVRLLGI 325
Query: 240 RVTQFN 245
++ N
Sbjct: 326 SLSNLN 331
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 132/255 (51%), Gaps = 29/255 (11%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + +IA +R + E GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 102 SLDEAYLDVT-LNHQNIPYASDIARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFVLP + V F++ LP+ KI G+GKVT ++ + G+NT ++ + H
Sbjct: 161 GQFVLPPQK--VEAFLTGLPLGKIPGVGKVTRQKMQRL-GMNTVGDLRR----------H 207
Query: 124 ST---ADFFLSVG-----LGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIA 173
S A+ F G L G N P R R IS+E T AL+ R L +A
Sbjct: 208 SPGELANLFGKWGYRLHDLAYGIDNRPVKAERERLQISTEITLPEDLPLALIVRHLPHLA 267
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-- 231
+ L +Q R +TLKLKTA F + TR++T + S +L A+ L +P
Sbjct: 268 DDLWQQLQNRKTEARGVTLKLKTADFRIITRSLTYSSPLPDSAALLS-AARELAGRIPHA 326
Query: 232 --VSLRLIGLRVTQF 244
+ RLIGL V
Sbjct: 327 SDIDYRLIGLGVGHL 341
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T++ + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTDIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G V+ D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F
Sbjct: 156 DGFMVITED--MIPDILKPLPVSKVYGIGQKSEERLKSM-GINTIGDLLKLSQENLVEIF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ +L + G+ R KSI E+T T+DK LL R ++++S ++
Sbjct: 213 GKVGVEIYLRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLRYAKLFSDIISEEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGL 239
+E L RT+T+K+KT+ F V T++ TL KYI EDI A ++++ +L +RLIGL
Sbjct: 272 FRERLYARTVTVKIKTSDFTVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGL 331
Query: 240 RVTQFNEDK 248
V+ + K
Sbjct: 332 SVSNLSAVK 340
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 138/245 (56%), Gaps = 8/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S EIA+E+R +Y GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 106 SLDEAYLDVT-YNKKGNPSASEIAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V P + V +F+ +L IRK GIGKVT + + GI T +++ K
Sbjct: 165 GQKTVKPKE---VESFLEALDIRKFYGIGKVTTEKMY-LLGIFTGKDLKTKSREFLEYHF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
++ + + G ++ R KS+ +E TF + L +L I++ L ++
Sbjct: 221 GNSGSHYYQIVRGFHNSPVKPERIPKSVGAEHTFLENLSSEVFLKERLDNISQELETRLK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K L G+T+TLK+K + F ++TR+ TL +IS IL+ A+ LL E L S+RL+G+
Sbjct: 281 KNKLAGKTITLKIKYSDFTLQTRSKTLPYFISDKSLILEIATELLYQEKLFNSVRLVGIS 340
Query: 241 VTQFN 245
++ N
Sbjct: 341 LSNLN 345
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 137/251 (54%), Gaps = 6/251 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEA+LD+TE + S IA E+R + E GLT S G++ N+ LAK+ SD NKPN
Sbjct: 101 ALDEAFLDVTE-NKIGCPSATLIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V+ F+ L I+K GIGK T + + GI T +++ K
Sbjct: 160 GQKTIEPDE--VINFLEELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ + GL ++ R KS+ +ERTF + + KL + E LS ++K
Sbjct: 217 KAGQIYYDIVRGLSNSPVRPNRTIKSVGTERTFDENLSSEVFIETKLDILVEELSLRLKK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+GL G+T+TLK+K + F +TR+ T+ ++S E IL A VLL E L S+RLIG+ +
Sbjct: 277 QGLGGKTITLKIKYSDFVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSL 336
Query: 242 TQFNEDKVRAP 252
+ N D+ + P
Sbjct: 337 SNLNTDEKKKP 347
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T++ + + IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTDIDKNPEV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G V+ D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F
Sbjct: 156 DGFTVITEDMIP--DILKPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ +L + G+ R KSI E+T T+DK LL ++++S ++
Sbjct: 213 GKVGVEIYLRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
+ GL RT+T+K+KT+ F + T++ TL KYI SEDI A ++ +L +RLIGL
Sbjct: 272 FRAGLYARTVTVKIKTSDFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGL 331
Query: 240 RVTQFNEDK 248
V+ + K
Sbjct: 332 SVSNLSAVK 340
>gi|440799683|gb|ELR20727.1| DNA polymerase kappa, putative [Acanthamoeba castellanii str. Neff]
Length = 463
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 3/162 (1%)
Query: 52 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
LAK+C D+NKP+GQF L DR A++ F+ LP+RKI G+GKVTE +L+ + GI C E+
Sbjct: 288 LAKICCDVNKPDGQFRLQADREAIIAFLKDLPVRKISGVGKVTEQMLKGL-GITKCCEIQ 346
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKL 169
+K ++L +F S+A+FFL LG+ S + + + RKS+S RTF + +A L +
Sbjct: 347 EKRAILFRLFKPSSAEFFLRASLGIWSPTSGEDSSPARKSVSKMRTFRPSGSQAFLMSQA 406
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 211
E+AE L+ M K+ L G+ L + LKT F++ TR+ L ++
Sbjct: 407 REVAESLAKSMAKKSLAGKNLAIYLKTDEFKMFTRSTMLNRF 448
>gi|327404453|ref|YP_004345291.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
gi|327319961|gb|AEA44453.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
Length = 370
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 147/256 (57%), Gaps = 12/256 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T ++GI S +A+E+R +Y+E GL SAG++ N+ AKV SD+NKP
Sbjct: 115 SLDEAFLDVT--TNKKGIQSATLLAKEIRERIYQEVGLRASAGISINKFTAKVASDVNKP 172
Query: 63 NGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
NGQ V+P + V TF+ LPI + GIGKVT ++++ G+ T +++ QK L
Sbjct: 173 NGQLTVIPEE---VETFLEKLPIDRFFGIGKVTATKMKEL-GVRTGKDLKQKSIDFLNQH 228
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSAD 179
F F+ ++ G+ + R RKS + E T FS K + L +IA L
Sbjct: 229 FGKQGLHFY-NIVRGIQYSKVKPNRIRKSFAVEHTYFSEIYSKRKILENLEQIALDLERR 287
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIG 238
M+K+ + G+ +++K+K A F +TRA T+ +Y+S+ E+ +L++ E+ +RL+G
Sbjct: 288 MKKKSVSGKCVSIKIKYADFTQQTRAKTVLEYMSTKEEFFPLIELLVEHLEINKPVRLLG 347
Query: 239 LRVTQFNEDKVRAPSD 254
+ ++ N ++ D
Sbjct: 348 ISFSKLNTEETELDQD 363
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T++ + + IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTDIDKNPEV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G V+ D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F
Sbjct: 156 DGFTVITEDMIP--DILKPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ +L + G+ R KSI E+T T+DK LL ++++S ++
Sbjct: 213 GKVGVEIYLRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
+ GL RT+T+K+KT+ F + T++ TL KYI SEDI A ++ +L +RLIGL
Sbjct: 272 FRAGLYARTVTVKIKTSDFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGL 331
Query: 240 RVTQFNEDK 248
V+ + K
Sbjct: 332 SVSNLSAVK 340
>gi|393723669|ref|ZP_10343596.1| DNA polymerase IV [Sphingomonas sp. PAMC 26605]
Length = 364
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 7/246 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+
Sbjct: 111 SLDEAYLDVTEDRHGLG-SAKAIAEQIRARIKAETRLTASAGVSYNKFIAKLASDQNKPD 169
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+P R + F++SLP+++ G+G VT + GI T ++ +
Sbjct: 170 GICVIPPARGS--AFVASLPVKRFHGVGPVTATRM-AALGIETGADLRDRPLAFLHAHFG 226
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
S AD+ G+ R KS+ +ERTF A L+ L +AE +++
Sbjct: 227 SYADYLYGAARGIDHRPVRSNRATKSVGAERTFETDIASPADLHAALDRVAEAALVRIER 286
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLR 240
G+RGRT+TLKL+ + F TRA +L + E + LL A+LPV L RL+GL
Sbjct: 287 HGVRGRTMTLKLRFSDFRTITRARSLSRGAFDRESFVTGGRELLDAQLPVPLGVRLLGLT 346
Query: 241 VTQFNE 246
++ ++
Sbjct: 347 LSGIHD 352
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V S +AE++R ++ E LT SAGV+ N+ LAKV SDINKPN
Sbjct: 104 SLDEAYLDVT-VNNSNNPSATLLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +P D+ + F++SLPIRK G+GK TE + + GI T E+ Q
Sbjct: 163 GITTIPPDK--ALEFLASLPIRKFHGVGKATERKMHQL-GITTGYELRQWREDQLIRHFG 219
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
FF + G+ + R RKSI E T + T+D + LA++AE L + K
Sbjct: 220 KYGSFFHDIVRGIDNRPVEPQRIRKSIGCETTLATDTDDIGTINAILADLAEELDHSLGK 279
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLR 240
+ G LTLK++ F +R++T++ + +S DIL LL A S +RL+GL
Sbjct: 280 RRIGGYNLTLKVRYLDFITISRSITVKTPLFTSADILPLLPTLLHATAAGSRKIRLLGLS 339
Query: 241 VTQFNEDK 248
+++ ++K
Sbjct: 340 LSKLVDEK 347
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 137/251 (54%), Gaps = 6/251 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEA+LD+TE + S IA E+R + E GLT SAG++ N+ LAK+ SD NKPN
Sbjct: 101 ALDEAFLDVTE-NKIGCPSATLIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ + D V+ F+ L I+K GIGK T + + GI T +++ K
Sbjct: 160 GQKTIEPDE--VINFLEELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ + GL ++ R KS+ +ERTF + + KL + E LS ++K
Sbjct: 217 KAGQIYYDIVRGLSNSPVRPNRTIKSVGTERTFDENLSSEVFIETKLDMLVEELSLRLKK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ L G+T+TLK+K + F +TR+ T+ ++S E IL A VLL E L S+RLIG+ +
Sbjct: 277 QSLGGKTITLKIKYSDFVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSL 336
Query: 242 TQFNEDKVRAP 252
+ N D+ + P
Sbjct: 337 SNLNTDEKKKP 347
>gi|294502105|ref|YP_003566170.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
gi|294342089|emb|CBH22754.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
Length = 393
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 145/261 (55%), Gaps = 34/261 (13%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ SG +A +R +Y+E GLT SAGV P++ +AKV SD +KP+
Sbjct: 133 SLDEAYLDVTE-PKKGPPSGTLVARRIREEIYQETGLTASAGVGPSKFVAKVASDRDKPD 191
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI-------NTCEEMLQKGS 115
G V+ P ++ + FI+ LP+ GIG VTE ++++ GI +T E+ L++
Sbjct: 192 GLTVIRPEEQ---LDFIAGLPVGDFHGIGPVTEEKMQEM-GIESGAGLQDTPEKALRR-- 245
Query: 116 LLCAVFSHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAE 171
F F L +G + P R KS+ +ERTFS ++E K +L R L
Sbjct: 246 ----RFGKRGGHF---KKLAMGEDDRPVQPDRESKSVGAERTFSEDISEPKEMLSR-LEP 297
Query: 172 IAEMLSADMQKEG-----LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
IAE ++ + G +RGRT+TLKLK+ EV TR TL++ I S E +++ A LL
Sbjct: 298 IAERVAGRLGSAGPEGTPVRGRTVTLKLKSHDHEVSTRQTTLRRAIRSEEALMRLAKWLL 357
Query: 227 KAELPV--SLRLIGLRVTQFN 245
P +RL+GL V+
Sbjct: 358 SRPHPPEEPVRLLGLSVSSLT 378
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 12/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA E+R +YE+ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 108 SLDEAYLDVTH-NKKNCPSATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPN 166
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D V F+ L +++ GIGKVT + + GI T +++ K S L F
Sbjct: 167 GQKTVSFDE--VQDFLDVLDVKRFYGIGKVTTEKMY-LKGIFTGKDLRNKSLSFLEEHFG 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ A ++ + G+ + R KS+ +ERTFS +T + + + L IA+ L M
Sbjct: 224 NH-AIYYYQLARGIHLSEVKPLRLPKSVGAERTFSKNITSE-VFMEKDLYAIAQELHERM 281
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIG 238
K+G+ G+T+TLK+K + F V+TR+ T I+ +I H S +L + L S+RL+G
Sbjct: 282 AKKGVSGKTITLKIKYSDFSVQTRSKTFPYQIAQKVEIF-HLSKELLYQQPLENSVRLLG 340
Query: 239 LRVTQFN 245
+ ++ N
Sbjct: 341 ISISNLN 347
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPN
Sbjct: 105 SLDEAYLDVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQFV+P +R F++SLP+ G+G T + GI+T + L++ SL L F
Sbjct: 164 GQFVIPPNRGE--DFVASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHF 219
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
+ A ++ G+ G + P R RKS+ E TF A L+ L E+A + A
Sbjct: 220 GKAAAFYY---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWA 276
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
QK L GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL
Sbjct: 277 GCQKRNLTGRTITLKLRYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRL 336
Query: 237 IGLRVT 242
+G+ ++
Sbjct: 337 LGITLS 342
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 19/249 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ EIA +R + + GLT SAG+APN+ LAK+ SD KPN
Sbjct: 103 SLDEAYLDVTH-NKQNLPYASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCA 119
GQFV+P R+A F+ +LP+ KI G+GK T + G+ T ++ +Q+G L L
Sbjct: 162 GQFVIPPPRIA--QFLLTLPLGKIPGVGKKTLQKM-HALGLQTAGDLQKMQRGELVNLFG 218
Query: 120 VFSHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
+ + D L G N P R R IS+E T + + R LA++A+ L
Sbjct: 219 RWGYRLYD------LARGIDNRPVQPQRERLQISTEITLPQDLPLSKIVRHLADLAKDLW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
A Q++ ++ TLTLKLKTA F + TR+ T + + L+ A+ L +P R
Sbjct: 273 AQAQRKQVQAHTLTLKLKTADFHILTRSQTYSSVLPDAAA-LEQAARQLAQRMPAGRDYR 331
Query: 236 LIGLRVTQF 244
LIGL ++
Sbjct: 332 LIGLGISHL 340
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 142/246 (57%), Gaps = 11/246 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T V + + +IA E++ V + GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTHVDK----NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G V+ D V + LP+ K+ GIG+ + LR + GI T E++L+ L +F
Sbjct: 156 DGLMVITED--MVPEILKPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + + G+ R KSI E+T T++K LL + L E +E++S ++
Sbjct: 213 GKTGVEIYNRIR-GIDERPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
KE L RT+T+K+KTA F V T++ T+ KYI SEDI + A +L + +L +RLIGL
Sbjct: 272 IKERLYCRTVTVKIKTADFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGL 331
Query: 240 RVTQFN 245
V+ +
Sbjct: 332 SVSNLS 337
>gi|294948988|ref|XP_002785996.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239900104|gb|EER17792.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 585
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 156/293 (53%), Gaps = 30/293 (10%)
Query: 4 SLDEAYLDITEVCRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPNRL-L 52
SLDEAY+DIT E IS +E A L + + EE +GLTCSAG+A L
Sbjct: 127 SLDEAYIDITAKVAEAAMVDESISEVEAASLLVSRMREEVCEKSSGLTCSAGIARGCFRL 186
Query: 53 AKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 112
AK+ SD+NKPNGQF++P ++ ++ S+PIRK+ G+G+V+E L GI+ +++
Sbjct: 187 AKMASDVNKPNGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVGDIII 246
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALLYRKL 169
K + L S S + + +G+ A KSIS ER+ S + + Y L
Sbjct: 247 KAAELLHAMSSSGGHWLIDAAMGVTDMEDVTAAAESGPKSISQERSLSTAKSGSAAY--L 304
Query: 170 AEIAEMLSADM-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 224
E+ E L + + +KE GR +T+KLKT ++V+ ++ TL++ + S + + AS
Sbjct: 305 HEVLEELCSQVMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYEAASE 363
Query: 225 LLK---AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIV 274
L+ A L +RL+G+RV+ F + P Q TL +F+ + AS V
Sbjct: 364 LMSTALATLKKPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRV 411
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPN
Sbjct: 104 SLDEAYLDVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQFV+P +R F++SLP+ G+G T + GI+T + L++ SL L F
Sbjct: 163 GQFVIPPNRGE--DFVASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHF 218
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
+ A ++ G+ G + P R RKS+ E TF A L+ L E+A + A
Sbjct: 219 GKAAAFYY---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWA 275
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
QK L GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL
Sbjct: 276 GCQKRNLTGRTITLKLRYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRL 335
Query: 237 IGLRVT 242
+G+ ++
Sbjct: 336 LGITLS 341
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 140/251 (55%), Gaps = 12/251 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEA+LD+TE + S IA+E+R ++E LT SAG++ N+ LAKV SD NKPN
Sbjct: 101 ALDEAFLDVTE-NKIGCPSATLIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + + V F+ +L I+K GIGK T + FGI T ++ K L F
Sbjct: 160 GQKTINPEE--VEAFLEALEIKKFFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFG 216
Query: 123 HSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
+ ++ V G N+P + R KS+ +ERTF + L KLA I E LS
Sbjct: 217 KAGKAYYYIVR---GIHNSPVSPDRLTKSVGTERTFDENLSSEVYLENKLAHIVEELSLR 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIG 238
++K+GL G+T+TLK+K A F +TR+ T +I+ + IL A LL E L S+RLIG
Sbjct: 274 LRKQGLAGKTVTLKIKYADFVQQTRSTTFPYFIADAGIILDCAKELLYQEKLQNSVRLIG 333
Query: 239 LRVTQFNEDKV 249
+ ++ N KV
Sbjct: 334 VSLSNLNNIKV 344
>gi|389872202|ref|YP_006379621.1| DNA polymerase IV [Advenella kashmirensis WT001]
gi|388537451|gb|AFK62639.1| DNA polymerase IV [Advenella kashmirensis WT001]
Length = 354
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 141/254 (55%), Gaps = 22/254 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T +GI S E+A ++ ++ E LT SAGVAPN+ LAK+ SD NKP
Sbjct: 101 SLDEAYLDVT--VNHKGIASATEVARRIQEDIFRETSLTASAGVAPNKFLAKIASDWNKP 158
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF- 121
NG V+P R VM+F+ LP+ KI G+G+VT + + L+ L F
Sbjct: 159 NGICVVPPSR--VMSFLQDLPLEKIPGVGRVTLAKFHRLQMKTIADLRLRSEWELTHHFG 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
++ F L+ G+ L +T Q + IS+E TF D+ L Y +L + + ++ +
Sbjct: 217 AYGHRLFELARGIDLREVDTNQQ--SQQISTETTF----DRDLPYLQLQDPLDAIARKLW 270
Query: 182 KEGLR----GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---- 233
++ LR GRT+TLKLK+ASF + TR+ T + S +++ +HA+ L A L
Sbjct: 271 EQVLRKRKFGRTVTLKLKSASFRIVTRSQTYSNPLYSVDEV-RHAAATLLARLEADKRHT 329
Query: 234 -LRLIGLRVTQFNE 246
RLIGL ++ F E
Sbjct: 330 LYRLIGLGISAFAE 343
>gi|376296835|ref|YP_005168065.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
gi|323459397|gb|EGB15262.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
Length = 386
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 143/261 (54%), Gaps = 15/261 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAYLD T + R G EI ++ V E GLTCS G AP R LAK+ SD++KP
Sbjct: 91 ASVDEAYLDGTGLERLFGPVD-EIGRRIKARVKEATGLTCSVGAAPVRFLAKIASDMDKP 149
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVF 121
+G F++ ++ +A F+ +LP+ KI G+G +L+ + G+ TC ++L K G
Sbjct: 150 DGMFIVRHEEVA--EFLQTLPVGKIPGVGAKLLEVLKRL-GVRTCGDILLKPGEYWEERL 206
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
A + G+ T KS S+E TF T D+ALL + L +E + D+
Sbjct: 207 GKYGAALY-DRARGIDPTPVTPCEAAKSCSAENTFREDTTDRALLRKWLLAQSERVGEDL 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
++ G +GRT+TLK+K A F TR+ +L+ ++ I + A LL + +LP ++RLIG+
Sbjct: 266 RRHGYKGRTVTLKVKYADFSQITRSRSLEARTDNTAVIFETACGLLEQVKLPRAVRLIGV 325
Query: 240 RVTQFNEDKVRAPSDPTQKTL 260
V+ F + P Q TL
Sbjct: 326 GVSNFG-------ARPRQVTL 339
>gi|154271913|ref|XP_001536809.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408796|gb|EDN04252.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 373
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 10/177 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+AS+DEAYL+IT C I LR+ V E+ + SAG+APN +AK+CS+ NK
Sbjct: 200 SASIDEAYLNITGYCATNEIEPEVAVRRLRSQVMEQTKVAVSAGIAPNARIAKICSNWNK 259
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ +PNDR +M F+S +P+RKI G+G+V E L + GI C ++ ++ +F
Sbjct: 260 PNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGIKNCSDIFTHRGVILPLF 318
Query: 122 SHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176
F + LGLGST + RKS+ +ERTF +D +A++ EML
Sbjct: 319 GEKCYKFLMQCYLGLGSTKIRPVEESERKSVGTERTFRDIDD-------IADLQEML 368
>gi|270356843|gb|ACZ80632.1| putative DNA-directed polymerase kappa [Filobasidiella depauperata]
Length = 570
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 129/248 (52%), Gaps = 41/248 (16%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK---VCS 57
M ASLDE YL + LR V +E +T SAG+APNR+LAK +CS
Sbjct: 190 MMASLDEGYL-----------------KHLRNQVEKETNMTISAGIAPNRMLAKMGKICS 232
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
D NKPNGQ+ + +R ++ F+ LP+RKI G G+VTE L + G+ +C ++ K + L
Sbjct: 233 DKNKPNGQYEMNFERSKIVRFMRDLPVRKIPGFGRVTERYL-ESLGVKSCGDIYDKRAEL 291
Query: 118 CAVFSHSTADFFLSVGLGLGSTN-TPQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEM 175
+ LG+ N TP+ R RKS+ ERTF + + L+ I +
Sbjct: 292 LVMNHWLGFRGLCRTYLGIADNNVTPRKREERKSVGVERTFRNKTNDEDIMNTLSSIVDE 351
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 235
L D+++ +RTRA ++ K++SS++DIL A LL+ ELP+ +R
Sbjct: 352 LERDLER------------------LRTRAKSVSKFVSSAKDILPIAQDLLQRELPLCIR 393
Query: 236 LIGLRVTQ 243
L+G + Q
Sbjct: 394 LLGFFLPQ 401
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 141/252 (55%), Gaps = 12/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++E S +A+E+R ++ + GLT SAG++ N+ LAK+ SD NKPN
Sbjct: 109 SLDEAFLDVSEYP-----SATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
GQ +P + V++F+ +L ++K GIG T+ + + GI + ++ LQ + L F
Sbjct: 164 GQKTIPPEE--VLSFLENLDVKKFHGIGAKTKLKMYGL-GIYSGNDLKLQSAAFLEKHFG 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
S +F V G+ ++ R KS+ +ERTF + + KL I+ +L +
Sbjct: 221 KSGIHYF-KVVRGIHTSEVKPHRIPKSLGAERTFETNLSSEVYIEEKLKLISALLEKRTK 279
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F +TR+ T Y+SS E I + + LL E L S+RLIG+
Sbjct: 280 KNKVAGKTITLKIKYSDFIQQTRSKTGTLYLSSKELIFEESKKLLYQEKLLNSVRLIGIS 339
Query: 241 VTQFNEDKVRAP 252
++ N K P
Sbjct: 340 LSNLNTSKKEIP 351
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 19/247 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+H + L G+ P R R IS+E ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLW 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SL 234
+ ++ + +++TLKLKT F + TR +T + +L+ A +L K P +
Sbjct: 272 RQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTKRVPPQTEDAF 331
Query: 235 RLIGLRV 241
RLIG+ V
Sbjct: 332 RLIGIGV 338
>gi|440749593|ref|ZP_20928839.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
gi|436481879|gb|ELP38025.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
Length = 369
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE + S IA E+R + +E GL SAG++ N+ LAK SDINKPN
Sbjct: 106 SLDEAFLDVTE-NKVNNPSATRIALEIRKRIKDELGLNASAGISYNKFLAKTASDINKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +LP + A F+ LPI + GIGKVT ++++ GI+ ++ Q L F
Sbjct: 165 GQAVILPKNAEA---FLEKLPIERFYGIGKVTAEKMKEL-GIHNGFDLKQYSVQYLTKKF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 179
S F+ ++ G+ + R RKS+S+E TFS ++ED+ + L I E +
Sbjct: 221 GKSGLHFY-NIVRGIHLSEVKPNRIRKSLSAESTFSKDISEDEQIA-DALERIWEEVVRR 278
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 239
M++ G++GRT+TLK+K F + TR+ T++K++ + + + L ++RL+G+
Sbjct: 279 MERSGVKGRTVTLKIKYHDFTIHTRSKTIEKFLEPARIKEIIWELWHQEPLVAAVRLLGI 338
Query: 240 RVTQFN 245
++ N
Sbjct: 339 GISNLN 344
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+++ E G S IAE L + GLT SAGV+ N++LAK+ SD+NKPN
Sbjct: 103 SLDEAYLDVSDSPHENG-SATRIAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
G V+ + A F++SL I + GIGK T + GI T ++ L + +L
Sbjct: 162 GIAVITPAQGA--DFVASLAIERFHGIGKATAAHM-HALGIQTGADLRRLSRETLRHEFG 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
H DF+ + G+ AR RKSI SE TF+ ED A LY+ L AD+
Sbjct: 219 KHG--DFYYDMARGIDLRPVEAARERKSIGSETTFARDIEDHAALYQALLAQNREAFADV 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 239
Q+ L+ TLTLKLK + F TR TL + ED + LL+ P +RL+G+
Sbjct: 277 QRRHLQPHTLTLKLKYSDFSQTTRRQTLSTPFAREEDAHYWIARLLQEIAPARPVRLVGI 336
Query: 240 RVTQFNED 247
+ ED
Sbjct: 337 TYSGLRED 344
>gi|354491803|ref|XP_003508043.1| PREDICTED: DNA polymerase kappa-like, partial [Cricetulus griseus]
Length = 407
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R VM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTMLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRKVVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 N 140
+
Sbjct: 405 D 405
>gi|381199359|ref|ZP_09906509.1| DNA polymerase IV [Sphingobium yanoikuyae XLDN2-5]
Length = 365
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 141/243 (58%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 107 SLDEAYLDVTQ--NKPGIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKP 164
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ A F++ +P+R+I GIG VT + + GI T ++ +
Sbjct: 165 DGLCVVRPAEGA--DFMARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDLPFLQTHF 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
S+A F+ G + + RKS+S E TF + ++ALL R++ IA+ L A +
Sbjct: 222 GSSALFYYRAARGEDDRPVHERQERKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARI 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIG 238
+K GRT+ LK+K A F + TR+ + + S E +++ LLKA+LP+ + RL+G
Sbjct: 281 EKAQAYGRTVVLKVKFADFRIITRSRSFAAPVRSVEQLVEAGRALLKAQLPLRMGARLLG 340
Query: 239 LRV 241
L V
Sbjct: 341 LGV 343
>gi|85374810|ref|YP_458872.1| DNA polymerase IV [Erythrobacter litoralis HTCC2594]
gi|84787893|gb|ABC64075.1| putative DNA damage-inducible protein [Erythrobacter litoralis
HTCC2594]
Length = 382
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 136/250 (54%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + G S A+ +R ++ EE GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 122 SLDEAYLDVTDDLQAVG-SATGTAQAIRKAIREETGLTASAGVSYNKFLAKLASDQNKPD 180
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
G V+ P + A F+ SLPIR+ G+G K E + R GI+T ++ K
Sbjct: 181 GLCVIRPGEGAA---FVQSLPIRRFHGVGPKGAEKMAR--LGIDTGADLAGKDLAWLRQN 235
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADM 180
S D+ G+ R RKS+ ERTFS + + R+ L I ++ +
Sbjct: 236 FGSFGDYLYRAARGIDLRPIRTNRSRKSVGGERTFSQDQHEPDELRETLERIIAIVWERI 295
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIG 238
++ RGRT+TLK+K F TRA +L Y+S ++ A LL+A+LP+ L RL+G
Sbjct: 296 ERSKARGRTITLKMKYNDFRTITRAQSLPHYVSGQDEFASVARDLLEAQLPLPLPIRLMG 355
Query: 239 LRVTQFNEDK 248
L ++ D+
Sbjct: 356 LTLSNLERDE 365
>gi|427409478|ref|ZP_18899680.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
gi|425711611|gb|EKU74626.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
Length = 365
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 139/241 (57%), Gaps = 11/241 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 107 SLDEAYLDVTQ--NKPGIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKP 164
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ A F++ +P+R+I GIG VT + + GI T ++ +
Sbjct: 165 DGLCVVRPTEGA--DFMARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDMPFLKTHF 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
S+A F+ G + + RKS+S E TF + ++ALL R++ IA+ L A +
Sbjct: 222 GSSALFYYRAARGEDDRPVHERQGRKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARI 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIG 238
+K GRT+ LK+K A F + TR+ + + S E ++ LLKA+LP+ + RL+G
Sbjct: 281 EKAQAYGRTVVLKVKFADFRIITRSRSFAAPVRSVEQLVDAGRALLKAQLPLRMGARLLG 340
Query: 239 L 239
L
Sbjct: 341 L 341
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 148/254 (58%), Gaps = 13/254 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 100 SIDEAYLDVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPD 155
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + L + K+ GIG+ + L+ + GI +++L+ L +F
Sbjct: 156 GLMVISED--MVPDILRPLSVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFG 212
Query: 123 HSTADFFLSV-GLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ L T R KSI E T T+D LL + L ++++S+++
Sbjct: 213 KYGKEIYDRIRGIDLRPVET--YRETKSIGKETTLKKDTDDIDLLSKYLKRFSKIISSEL 270
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGL 239
++E L RT+T+K+KT+ F V T++ TL +YI S EDI A+ +LK +++ +RLIGL
Sbjct: 271 KEERLYCRTVTVKIKTSHFTVHTKSRTLNEYIDSPEDIYNVATAILKESKISQPVRLIGL 330
Query: 240 RVTQFNEDKVRAPS 253
V+ + +K++ S
Sbjct: 331 SVSNLSRNKIKQLS 344
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 37/267 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T C + G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP
Sbjct: 104 SLDEAYLDVT--CNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G FV+ R V+ F+ LP+RK+ G+GKV + L + GI T ++ +
Sbjct: 162 DGLFVIKPSR--VLDFLQPLPVRKVPGVGKVMQARL-EQLGIQTVGDLSR---------- 208
Query: 123 HSTADF----------FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI 172
HS A+ + G+ + + +S+E TF D L L E
Sbjct: 209 HSVAELEQRFGRYGVRLYELARGIDERAVQADQPAQQVSAETTF----DTDLALEALGEA 264
Query: 173 AEMLSADMQKEGLR----GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LK 227
E L+A + ++G + GRT LKLKT F + TR++TL + S+ ++ A L +
Sbjct: 265 LERLAAKVWEQGAKKGRIGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTR 324
Query: 228 AELPV--SLRLIGLRVTQFNEDKVRAP 252
+LP RL+G+ ++ F + + AP
Sbjct: 325 VDLPAHTRYRLVGVGMSNFPDAQAEAP 351
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IAEE+R + ++ GL SAG++ N+ +AK+ SDINKPN
Sbjct: 106 SLDEAYLDVTE-NKKGNPSASMIAEEIRKKIKKKTGLNASAGISINKFVAKIASDINKPN 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ L + V+ F+ +L ++K G+GKVT E + R GI T +++ K L F
Sbjct: 165 GQKTLSPEE--VVPFLETLDVKKFYGVGKVTKEKMYR--LGIYTGKDLKGKSLEFLEENF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADM 180
S A F+ +V G+ ++ +R +KS+++E T F + + +L EIA + +
Sbjct: 221 GKSGA-FYHNVVRGIHNSKVKPSRTQKSLAAEHTFFENISSEIFMMERLDEIAAEVEKRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
K L G+T+TLK+K + F ++TR+ TL +++S E IL LL E + S+RL+G+
Sbjct: 280 HKSKLAGKTVTLKIKYSDFTLQTRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGI 339
Query: 240 RVTQFNED 247
++ N +
Sbjct: 340 SISNLNNE 347
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPN
Sbjct: 105 SLDEAYLDVTNPLLLRP-SATAIAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
GQFV+P +R F+++LP+ G+G T + GI+T + L++ SL L F
Sbjct: 164 GQFVIPPNRGE--AFVANLPVNAFHGVGPATAQRM-HTLGIHTGAD-LRRFSLDILRQHF 219
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
+ A ++ G+ G + P R RKS+ E TF+ A L+ L E+A + A
Sbjct: 220 GKAAAFYY---GIARGKDDRPVEPNRPRKSLGKEITFAQDLRTSAELHAALHELAAKVWA 276
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
QK L GRT+TLKL+ F TR+++L + E + + A LL LPV +RL
Sbjct: 277 GCQKRNLTGRTITLKLRYTDFNQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRL 336
Query: 237 IGLRVT 242
+G+ ++
Sbjct: 337 LGITLS 342
>gi|401888778|gb|EJT52727.1| hypothetical protein A1Q1_02062 [Trichosporon asahii var. asahii
CBS 2479]
Length = 618
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 38/246 (15%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M A LDE IT ++ ++ +E E+LR V GLT SAG+APNR+LAK
Sbjct: 264 MMAGLDEG---ITGYIQQHDVTALEAVEKLRAEVEAATGLTISAGIAPNRMLAK------ 314
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
PNG F L +R ++ F+ LP+RKI G G+VTE L + FG+ L
Sbjct: 315 -PNGVFELEFNRATIVKFMHDLPVRKIPGFGRVTERCL-EGFGVE-----------LTGS 361
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+H +G+ S + RKS+ ERTF + + +LA IAE L D+
Sbjct: 362 KAH--------LGIADNSVQPYKREERKSVGVERTFRDKWEDEDILAELANIAEELEDDL 413
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
++ G+T+T+K K ++E ++RA +++KYI++ +DIL ELPV +RL+G+R
Sbjct: 414 KRLQYSGKTVTVKYKLHTYESKSRAQSVKKYINTKDDIL--------PELPVRIRLLGIR 465
Query: 241 VTQFNE 246
++ +
Sbjct: 466 LSNLKD 471
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 143/251 (56%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T RG+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 105 SLDEAYLDVT--ANPRGLPTASDTATEIRACILSETGLTASAGVSYNKFLAKLASDMRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVF 121
NGQ+V+P R A FI++LP++K GIG VT + + GI T ++ Q L F
Sbjct: 163 NGQYVIPPQRGA--EFIATLPVKKFHGIGPVTAAKM-NALGIQTGADLRSQSIEFLQRQF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSA 178
S A ++ ++ G R RKS SE TFS ED+ + + + E+A+ + A
Sbjct: 220 GKSGA-WYYAIARGEDDRPVEPNRPRKSSGSETTFS--EDRVIPAEIEAGVLEMADDVWA 276
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRL 236
+K G T T+K+K A F + TR+ T + I+S E + + + L+++ PV+ +RL
Sbjct: 277 WCEKNQSFGATATVKIKYADFRIVTRSRTASRPITSRELLHETSLALVRSIYPVAIGIRL 336
Query: 237 IGLRVTQFNED 247
+G+ V+ F+ +
Sbjct: 337 VGVSVSNFSSN 347
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 137/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTHNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD T + GI ++IA E+R + E GLT SAGV+ N+LLAK+ SD KPN
Sbjct: 133 SLDEAFLDATAATAD-GILAVQIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPN 191
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G FV+P +R +TF++ LP+ K+ G+G T L + GI+T ++ L A F
Sbjct: 192 GLFVVPPERG--LTFLAPLPVSKLHGVGPATVKKLSSM-GIHTVLDLRNMSREALIAQFG 248
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
T +F + G+ +R RKS+ +ERTF D ++ L ++A ++A +Q
Sbjct: 249 -KTGLWFYEIARGIDLRPVQPSRQRKSVGTERTFPKNLADPKVMLATLQQMAGQVAARLQ 307
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP------VSLR 235
GL GRT+++K + F TRA T + I +E I LL +P S+R
Sbjct: 308 VLGLAGRTVSIKARFPDFATVTRAHTDAQAIWRTEAISALLPGLLAKAIPTRLPVHASVR 367
Query: 236 LIGLRVT 242
L+G+ V+
Sbjct: 368 LLGVTVS 374
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 11/227 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI S +IA E+R +YEE GLT SAG++ N+ LAKV SD NKP
Sbjct: 102 SLDEAYLDVTE--NKKGIESANDIAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKP 159
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
NGQ + + ++ F+ LPI K GIGKVT + + ++ + L+ SL L +
Sbjct: 160 NGQKTIHPTQ--ILEFMEELPIEKFYGIGKVTANKMHEMHIFKGAD--LKNKSLEELIRL 215
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F S +++ +V G+ ++ R +KS++ E TF D+ ++ +L I+E L
Sbjct: 216 FGKS-GNYYYNVVRGIHNSEVKPHRIQKSVAVEETFWDNLLDEEQVFAQLKTISEELEER 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
+ K+ ++G+++TLK+K F TR+ T Y + D + A L
Sbjct: 275 LLKKEIKGKSITLKIKYKDFTQYTRSTTRDSYFGGAHDFFETARKLW 321
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 19/250 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 132 SLDEAYLDVTHNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 190
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 191 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 243
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+H + L G+ P R R IS+E T + ED +L L +AE L
Sbjct: 244 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEIT--LPEDLSLEQAAGHLPHLAEDLW 301
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SL 234
+ ++ + + +TLKLKT F + TR++T + ++ +L A L++ P +
Sbjct: 302 RQIARKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAF 361
Query: 235 RLIGLRVTQF 244
RLIG+ V
Sbjct: 362 RLIGIGVNHL 371
>gi|424912575|ref|ZP_18335952.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848606|gb|EJB01129.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 365
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 108 SLDEAYLDVTENLKDMPIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + + GI T ++ K
Sbjct: 167 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMHRL-GIETGADLKAKSLPFLVEHF 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF+ +D L R+L +AE + + +
Sbjct: 223 GKSGPYFYGIARGIDERQVRPDRVRKSVGAEDTFTADIDDLELATRELRPLAEKVWSYCE 282
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+G G+T+T+K+K + F TR+ T S++EDIL A+ LL P +RL+G+
Sbjct: 283 AKGFSGKTVTVKIKYSDFTQATRSRTTAIPYSNAEDILDAANTLLAGVYPFKRPVRLLGV 342
Query: 240 RVTQFNEDK 248
++ DK
Sbjct: 343 TLSSLTNDK 351
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 142/248 (57%), Gaps = 11/248 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 118 VSIDEAYLDVTN-NKINSSSAIKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYQKP 176
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
G V+ D + F+ LPI K G+GK T + ++ GI T ++ QK + L +F
Sbjct: 177 RGLTVVTPDE--AVEFLRDLPIEKFHGVGKKTVPKMHEL-GIYTGNDLYQKSEMELIQIF 233
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
+ V G+ ++ R RKS+ ERT+ ++T ++ L +L +AE ++
Sbjct: 234 GKMGYSLYRKVR-GIHNSPVQVTRERKSVGRERTYGKALTSEQECL-SQLRIMAEQVTES 291
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLI 237
++KE G+T+ LKL+ + FE T+ T+Q+YI +DI AS++ + A++ +RL+
Sbjct: 292 LKKEQKHGKTVVLKLRYSDFETITKRATVQEYIYQKDDIFSQASLIFEEVAQVEKGVRLL 351
Query: 238 GLRVTQFN 245
G+ +T +
Sbjct: 352 GITMTNLD 359
>gi|406697434|gb|EKD00693.1| hypothetical protein A1Q2_04885 [Trichosporon asahii var. asahii
CBS 8904]
Length = 618
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 38/246 (15%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
M A LDE IT ++ ++ +E E+LR V GLT SAG+APNR+LAK
Sbjct: 264 MMAGLDEG---ITGYIQQHDVTALEAVEKLRAEVEAATGLTISAGIAPNRMLAK------ 314
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
PNG F L +R ++ F+ LP+RKI G G+VTE L + FG+ L
Sbjct: 315 -PNGVFELEFNRATIVKFMHDLPVRKIPGFGRVTERCL-EGFGVE-----------LTGS 361
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+H +G+ S + RKS+ ERTF + + +LA IAE L D+
Sbjct: 362 KAH--------LGIADNSVQPYKREERKSVGVERTFRDKWEDEDILAELANIAEELEDDL 413
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 240
++ G+T+T+K K ++E ++RA +++KYI++ +DIL ELPV +RL+G+R
Sbjct: 414 KRLQYSGKTVTVKYKLHTYESKSRAQSVKKYINTKDDIL--------PELPVRIRLLGIR 465
Query: 241 VTQFNE 246
++ +
Sbjct: 466 LSNLKD 471
>gi|408785779|ref|ZP_11197520.1| DNA polymerase IV [Rhizobium lupini HPC(L)]
gi|408488247|gb|EKJ96560.1| DNA polymerase IV [Rhizobium lupini HPC(L)]
Length = 290
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 33 SLDEAYLDVTENLKDMPIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPN 91
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + + GI T ++ K
Sbjct: 92 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMHRL-GIETGADLKAKSLPFLVEHF 147
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF+ +D L R+L +AE + + +
Sbjct: 148 GKSGPYFYGIARGIDERQVRPDRVRKSVGAEDTFTADIDDLELATRELRPLAEKVWSYCE 207
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+G G+T+T+K+K + F TR+ T S++EDIL A+ LL P +RL+G+
Sbjct: 208 AKGFSGKTVTVKIKYSDFTQATRSRTTAIPYSNAEDILDAANTLLAGVYPFKRPVRLLGV 267
Query: 240 RVTQFNEDK 248
++ DK
Sbjct: 268 TLSSLTNDK 276
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 136/248 (54%), Gaps = 15/248 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTHNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED +L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ ++ + + +TLKLKT F + TR++T + ++ +L A L++ P + RL
Sbjct: 274 IARKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRL 333
Query: 237 IGLRVTQF 244
IG+ V
Sbjct: 334 IGIGVNHL 341
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 139/257 (54%), Gaps = 16/257 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 108 SLDEAYLDVTENLKGMAIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ PN+ +F+ +LP++K G+G T +R + GI T ++ K +
Sbjct: 167 GQAVITPNNG---PSFVEALPVKKFHGVGPATAERMRKL-GIETGLDLKSKSLIFLQEHF 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSAD 179
+ +F V G+ R RKS+ +E TF ED L R AE+ + +
Sbjct: 223 GKSGPYFYGVARGIDERRVRADRIRKSVGAEDTF--VEDIDDLERATAELKPLSDKIWLY 280
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 237
+ +G+ G+T+T+K+K + F TR+ T ++ D+ AS LL P S+RL+
Sbjct: 281 CEAQGISGKTVTVKIKYSDFTQATRSRTGIAPFANMSDVFDAASALLATVYPFKRSVRLL 340
Query: 238 GLRVTQFNEDKVRAPSD 254
G+ ++ +D+ PSD
Sbjct: 341 GVTLSSLTKDQ---PSD 354
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 6/246 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+DIT C+ +A ++ ++ E GL CS GVAP + +AK+ SD +KP
Sbjct: 98 ASIDEAYVDITG-CQTLFGPPETMARAMKAAIREATGLPCSVGVAPVKFIAKIASDYDKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G ++ + + F+ LP+ KI G+GK E L + GI ++ + A
Sbjct: 157 DGLTIVTPE--TALDFLGPLPVSKIPGVGKRAEETLARL-GIRLVADIRRHEPEFLARHC 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ GS R KS+S+E TF T D+ +L L + AE + +++
Sbjct: 214 GKWGLDLYNKAHARGSAVVSTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELR 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+EGLRGRT+T+KLK +F TR+ TL + +S I + A LL AE LP LRLIG+
Sbjct: 274 QEGLRGRTVTIKLKFNTFRQITRSRTLAEPTASDSAIFETARALLNAEPLPNPLRLIGVG 333
Query: 241 VTQFNE 246
V+QF E
Sbjct: 334 VSQFGE 339
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 140/252 (55%), Gaps = 23/252 (9%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTYIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ D + + LP+ K+ GIG+ +E L+ GINT +++L+ +
Sbjct: 156 DGFMVITEDMIP--DILKPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQ 205
Query: 123 HSTADFFLSVGLGL-----GSTNTPQARFR--KSISSERTFSV-TEDKALLYRKLAEIAE 174
S + F +GL + G P R KSI E+T T+DK LL + ++
Sbjct: 206 ESLIEIFGKLGLEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSD 265
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVS 233
++S ++ +E L RT+T+K+KT F V T++ TL KYI EDI A ++++ +L
Sbjct: 266 IISEELVRERLYARTVTVKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQY 325
Query: 234 LRLIGLRVTQFN 245
+RLIGL V+ +
Sbjct: 326 IRLIGLSVSNLS 337
>gi|403377318|gb|EJY88651.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 701
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 6 DEAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
DEA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NK
Sbjct: 266 DEANLDITDYLNTNNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNK 325
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCA 119
PNGQ L D+ ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 326 PNGQTYLKPDQQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQI 382
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEML 176
T F LG+ S N + +KSIS TF K++++ L
Sbjct: 383 ALKERTVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKISQLCTEL 441
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LR 235
+ + K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P R
Sbjct: 442 AERVDKRKIAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPAR 501
Query: 236 LIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQN--SLGSDINDDCLIDD 292
LIG++++ N+ +V+ D + S A +KI +Q L +I DC+ D
Sbjct: 502 LIGVKLSHLKNQHEVK--KDRNIGGFFDNKISKEAYQKI-NEQKLLKLHEEIKKDCIDDI 558
Query: 293 KETSV 297
K T V
Sbjct: 559 KCTKV 563
>gi|220905578|ref|YP_002480890.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869877|gb|ACL50212.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 426
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 143/259 (55%), Gaps = 33/259 (12%)
Query: 3 ASLDEAYLDITEVCRERGISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 60
AS+DEAY+D T + ER +E + ++T + + GLTCS G AP + LAK+CSD+N
Sbjct: 97 ASVDEAYMDATGL--ERLFGPLEELVAGIKTRIVDVTGGLTCSVGAAPVKFLAKICSDVN 154
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KP+G F+L + M F+ +LP+ +I G+GK T L+D+ G+ T ++
Sbjct: 155 KPDGVFILRQENMD--AFLCALPVGRIPGVGKRTVQSLQDL-GVRTVAQL---------- 201
Query: 121 FSHSTADF----FLSVGLGL-------GSTNTPQARFRKSISSERTFSV-TEDKALLYRK 168
+ DF F GL L S R KS S+E TF+ T D+ L R
Sbjct: 202 -RRFSPDFMERRFGKWGLALYERAQGRDSRKVETEREAKSESAECTFAEDTRDRDFLQRM 260
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
L AE + + +++ G RGRT+TLK+K F TR+ TL++ +S++E I + LL A
Sbjct: 261 LMAHAERVGSSLRRHGYRGRTITLKVKFCDFRQITRSRTLEEAVSATETIFETGCRLL-A 319
Query: 229 ELPV--SLRLIGLRVTQFN 245
ELP+ +RLIGL V+ F+
Sbjct: 320 ELPLPQPVRLIGLGVSGFD 338
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 145/252 (57%), Gaps = 17/252 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE R G+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 105 SLDEAYLDVTENLR--GLPTASDTAAEIRARILAETGLTASAGVSYNKFLAKLASDVRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
NGQFV+P R A FI LP+++ G+G VT + + GI T ++ Q L F
Sbjct: 163 NGQFVIPPQRGA--EFIEGLPVKQFHGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSA 178
S A ++ ++ G R RKS SE TFS ED+ L + + E+A+ + A
Sbjct: 220 GRSGA-WYYAIARGEDDRPVEPNRPRKSSGSETTFS--EDRLLPAEIEAGVLEMADDVWA 276
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV-LLKAELPVS--LR 235
+K G T+T+K+K A F + TR+ T + + ++ D+L S+ L+++ PV+ +R
Sbjct: 277 WCEKNQSFGATVTVKIKFADFRIVTRSRTASRPV-TAHDLLHEISLALVRSIYPVTTGVR 335
Query: 236 LIGLRVTQFNED 247
L+G+ V++F+ D
Sbjct: 336 LVGVSVSKFSSD 347
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|390169745|ref|ZP_10221678.1| DNA polymerase IV [Sphingobium indicum B90A]
gi|389587749|gb|EIM65811.1| DNA polymerase IV [Sphingobium indicum B90A]
Length = 359
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + GI S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 104 SLDEAYLDVTR--NKPGIPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKP 161
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V+ P + A FI+ +P+R+I G+G VT ++ GI T ++ +
Sbjct: 162 DGICVVRPQEGAA---FIAKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLPFLQHH 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
S A F+ G + + RKS+S E TF +T + AL+ +L IAE L
Sbjct: 218 FGSAALFYYRASRGEDDRPVHERQERKSVSVEDTFFDDLTAEDALIV-ELDRIAENLWGR 276
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLI 237
++K G GRT+ LK+K A F + TR+ + + S + + + LL+A+LP+ + RL+
Sbjct: 277 IEKSGAYGRTVVLKVKFADFRIITRSRSFAAPLRSPDLLAETGRALLRAQLPLRMGARLL 336
Query: 238 GLRVTQFNEDK 248
GL V + ++
Sbjct: 337 GLGVHNLDHEE 347
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 19/247 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPQK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+H + L G+ P R R IS+E ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLW 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SL 234
+ ++ + +++TLKLKT F + TR +T + +L+ A +L P +
Sbjct: 272 RQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAF 331
Query: 235 RLIGLRV 241
RLIG+ V
Sbjct: 332 RLIGIGV 338
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 9/226 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPN
Sbjct: 105 SLDEAYLDVT-VNKKGNPSATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPN 163
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V P + V+ F+ +L I+K G+GKVT+ + GI T ++ K + L F
Sbjct: 164 GQKTVHPTE---VLDFLEALDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTENF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S A ++ V G+ + R RKSI +ERTF+ + + +L E++E L+ +
Sbjct: 220 GKSGAHYYRIVR-GIHHSAVKPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRL 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
K + G+T+TLK+K + F V TR+ T+ YI + + + A LL
Sbjct: 279 TKSDVAGKTITLKIKYSDFSVHTRSKTIAYYICDANLLFEVAKELL 324
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ G + IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 107 SLDEAYLDLTDHLN--GSTATRIAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPD 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G FV+P + A F+ LPI + GIG T + + GI T ++ ++ L A F
Sbjct: 165 GLFVIPPE--AGAEFVQGLPIGRFHGIGPATAARM-EAHGILTGADLARQSLDFLTARFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQ 181
S A ++ ++ G+ + R RKSI +E T F D A + LA +A+ +
Sbjct: 222 KSGA-YYWNISRGIDTREVKPDRIRKSIGAENTYFEDLRDIAAAHEALAVLADKVWRHTT 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGL 239
LRGRT+TLK+K F TRA +L + + S +++L+ A LL P +RL+G+
Sbjct: 281 TAALRGRTVTLKVKYGDFRQITRARSLPRAVESRDEMLEMACELLAPVFADPHGVRLLGI 340
Query: 240 RVTQFNEDK 248
++ E +
Sbjct: 341 TLSGLEEAR 349
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 23/255 (9%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTYIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ D + + LP+ K+ GIG+ +E L+ GINT +++L+ +
Sbjct: 156 DGFMVITEDMIP--DILKPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQ 205
Query: 123 HSTADFFLSVGLGL-----GSTNTPQARFR--KSISSERTFSV-TEDKALLYRKLAEIAE 174
S + F +GL + G P R KSI E+T T+DK LL + ++
Sbjct: 206 ESLIEIFGKLGLEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSD 265
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVS 233
++S ++ +E L RT+T+K+KT F V T++ TL KYI EDI A ++++ +L
Sbjct: 266 IISEELVRERLYARTVTVKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQY 325
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V+ + K
Sbjct: 326 IRLIGLSVSNLSAVK 340
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 143/250 (57%), Gaps = 14/250 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S IA E+R + +E GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 104 SLDEAYLDVTQ-NKKNNPSATLIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ + P+D V F+ SL I+K GIGKVT + + GI T +++ K L F
Sbjct: 163 GQKTIHPDD---VTLFLESLDIKKFYGIGKVTTEKMYQL-GIYTGQDLKSKTIEYLEEHF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSA 178
S ++ L G +N+P R KS+++E TF + + KL IA+ L+
Sbjct: 219 GKSGTHYY---HLVRGISNSPVKPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAK 275
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLI 237
+QK L G+T+TLK+K + F +TR+ TL +++ +L+ A LL + + S+RL+
Sbjct: 276 RLQKHKLSGKTVTLKIKYSDFSQQTRSKTLPYFVADRNVLLEVAKELLYQDRMKDSVRLL 335
Query: 238 GLRVTQFNED 247
G+ ++ N +
Sbjct: 336 GISLSNLNTE 345
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 19/247 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 118 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 177 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 229
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+H + L G+ P R R IS+E ++ ED L L +AE L
Sbjct: 230 NHFGRYGYRLYDLARGTDERPVEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLW 287
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SL 234
+ ++ + +++TLKLKT F + TR +T + +L+ A +L P +
Sbjct: 288 RQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAF 347
Query: 235 RLIGLRV 241
RLIG+ V
Sbjct: 348 RLIGIGV 354
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 12/274 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + + S +A+++R ++ E LT SAG++ N+ LAKV SDINKPN
Sbjct: 71 SLDEAFLDVT-INNDNNPSATILADKIRRQIFRELQLTASAGISFNKFLAKVASDINKPN 129
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +P + + F+SSLPIRK G+GK TE + + GI T ++ Q +
Sbjct: 130 GIATIPPGK--ALEFLSSLPIRKFYGVGKATEQKMHQL-GITTGYDLRQWQEDNLILHFG 186
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
FF + G+ + R RKSI E T ++ T+D + L +AE L +++
Sbjct: 187 KIGSFFHDIVRGIDNRPVEPQRIRKSIGCETTLAIDTDDICKINDILTGLAEELGNSLKR 246
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLR 240
+ + G TLTLK++ F TR++T++ + S++DIL LL A S +RL+GL
Sbjct: 247 KRIGGYTLTLKVRYLDFITITRSLTVKIPLFSTDDILPLLPTLLHATAAGSRKIRLLGLS 306
Query: 241 VTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIV 274
V + + + S P Q L FMT G S+ +V
Sbjct: 307 VAKLADGE---KSIPRQLKLP-FMT-GINSRPVV 335
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ + ++AE++R + E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTDNLQQIPYAS-DVAEKIRAEILAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + A F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +F
Sbjct: 161 GQFVLPPQKAA--AFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELLN-LF 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ + G+ R R IS+E T A L +AE L +Q
Sbjct: 217 GRYGYRLY-DLARGVDERPVKPDRERLQISTEITLPEDLSLAQAAGHLPHLAEDLWRQIQ 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLI 237
++ + +++TLKLKT F + TR++T + S +L+ A L +P + RLI
Sbjct: 276 RKNVEAKSVTLKLKTHDFRIITRSLTYSSVLPDSAALLRAAQT-LAGRIPPQREDAFRLI 334
Query: 238 GLRVTQF 244
GL V
Sbjct: 335 GLGVAHL 341
>gi|403343923|gb|EJY71296.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 894
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 140/255 (54%), Gaps = 17/255 (6%)
Query: 3 ASLDEAYLDITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 58
S DE LD+T+ + + I + +++R + ++ LT S GVA N+LLAK+CSD
Sbjct: 397 PSPDEFLLDVTQYIKTYNLDDDLGRIFLGDKIRKLILQKTQLTASCGVACNKLLAKICSD 456
Query: 59 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
NKP+G L + + + F+ +LPI+K+ GIGKVTE I+ + GI C++++ K +
Sbjct: 457 FNKPDGLTFLQLNAVEISKFMDNLPIKKLQGIGKVTEMIMNGL-GIFNCKDIVVKAREIY 515
Query: 119 AVFSHSTADFFLSVGLGLGST-NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
F+ + DF + LG+G + Q + +KS+S +F D LL K+ E+A+ L+
Sbjct: 516 INFTENVFDFLVKSALGIGKNLHDEQTQIKKSLSVAESFKNINDYELLKNKVIELAKELA 575
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKY--ISSS------EDILKHASVLLKA 228
E L GRTLT++ KT + + + + +Q Y SSS E+++ + L
Sbjct: 576 QKCVAEQLLGRTLTMEYKTKNLLTKQKYTSNIQPYRQYSSSIYTDNEEELVNVSLKLFHQ 635
Query: 229 ELPV--SLRLIGLRV 241
P+ +R+IGL++
Sbjct: 636 IWPIDGGMRMIGLKL 650
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 15/245 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ P + RL
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRL 333
Query: 237 IGLRV 241
IG+ V
Sbjct: 334 IGIGV 338
>gi|333897923|ref|YP_004471797.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113188|gb|AEF18125.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
Length = 379
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 144/253 (56%), Gaps = 11/253 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T++ + +IA+E++ V+ GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 101 SIDEAYLDVTDIDKNPE----DIAKEIKEKVHMVTGLTVSAGVSYNKFLAKIASDWNKPD 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G ++ D V + L + K+ GIGK + L+ + G+ +++L+ L +F
Sbjct: 157 GLMIITED--MVPDILRPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELTNIFG 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ S R KSI E T T D LL + L A+++S++++
Sbjct: 214 KYGKEIYDRIR-GIDSRPVETYRETKSIGKETTLKKDTSDADLLLKYLRGFADIVSSELK 272
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLR 240
E L RT+T+K+KT++F + TR+ TL +YI SS+DI A + K A++ +RLIGL
Sbjct: 273 GERLYCRTVTVKIKTSNFTLHTRSRTLNEYIDSSDDIYSVAEAIFKEAKMTQPVRLIGLS 332
Query: 241 VTQFNEDKVRAPS 253
V+ + K++ S
Sbjct: 333 VSNLSATKIKQLS 345
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 15/245 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 92 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 151 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 203
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 204 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 263
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ P + RL
Sbjct: 264 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRL 323
Query: 237 IGLRV 241
IG+ V
Sbjct: 324 IGIGV 328
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 6/244 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 101 SLDEAYLDVT-TNKMDMPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ +P + V+ F++ L I+K GIGKVT + GI T ++ K +
Sbjct: 160 GQKTVPPEE--VLDFLAQLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKTLEELQEYFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ ++F + G+ + R KSI E TF + + L ++ E ++ + K
Sbjct: 217 NNGEYFYQIARGIHLSPVQPFRLVKSIGVEHTFETNISSEIFMEEPLKKLCEEVAQRLAK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRV 241
+ L +T+TLKLK + F+ +TR+ TL ++ S I + S LL E L S+RL+G+ +
Sbjct: 277 KQLLAKTVTLKLKYSDFKQQTRSRTLIDFVGDSATIYQVISELLYQERLRESVRLLGVSL 336
Query: 242 TQFN 245
+ FN
Sbjct: 337 SHFN 340
>gi|242277745|ref|YP_002989874.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
gi|242120639|gb|ACS78335.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
Length = 389
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 6/246 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+DIT + G + ++IA ++ + + GLT S G+AP + LAK+ SD+NKP
Sbjct: 100 ASIDEAYIDITGTEKLFG-TPLQIARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKP 158
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G ++ ++ V F+ +LP+ KI G+GK LR +GI ++ +
Sbjct: 159 DGISIITAEQ--VQDFLKTLPVEKIPGVGKKALPRLRS-YGITYAADLRRYPPEFWKERF 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
G G+ T + KS S+E TF D L L + +E ++AD++
Sbjct: 216 GERGLVLYEKGAGIDPTPVTEGGAMKSSSAENTFGEDVSDIHTLKTLLLKQSERIAADIR 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR 240
K G++GRT+TLK+K F TR+ TL S + I K A LL AELP+ +RLIG+
Sbjct: 276 KHGVKGRTVTLKVKFPDFRQITRSRTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVG 335
Query: 241 VTQFNE 246
++ F E
Sbjct: 336 ISNFEE 341
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 146/255 (57%), Gaps = 12/255 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + G S I+IA++++ + +E LT SAG++ ++ +AK+ SD KP+
Sbjct: 109 SLDEAYLDVTDDKQNIG-SAIDIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPD 167
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G F+ P+ ++ FI +LPI K G+GKVT ++ + N + K + L F
Sbjct: 168 GLTFIGPS---KIVPFIEALPIEKFFGVGKVTAAKMKKLGIFNGADLKKWKQNDLTKQFG 224
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
S FF + G+ + + R KS+ +E TF + +D +L +L +++E +S +
Sbjct: 225 KS-GKFFYEIVRGIDNRSVKPNRISKSVGAEDTFENDIDDIEILNEELQKLSERVSRRLN 283
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGL 239
+ +G+T+TLK+K + F TR+ TL Y +S + I +HAS LL+ +RL+G+
Sbjct: 284 DKEFKGKTMTLKVKFSDFTQITRSTTLDFYTNSFDIIFEHASSLLEHVDREEKRIRLLGV 343
Query: 240 RVTQFNEDKVRAPSD 254
V+ F +K P+D
Sbjct: 344 SVSHFFHEK---PAD 355
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|126640285|ref|YP_001083269.1| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
Length = 296
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 45 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 103
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 104 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 157
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 158 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 217
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 218 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 277
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 278 GIGVYQLQ 285
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL
Sbjct: 161 GQFVLPPYK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 140/248 (56%), Gaps = 8/248 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R ++E+ GLT SAG++ N+ +AK+ SD NKPN
Sbjct: 105 SLDEAYLDVTE-NKKGNPSATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQ + D V FI L ++K GIGKVT + + GI T ++ K L F
Sbjct: 164 GQKTVNPDE--VEAFIEVLDVKKFYGIGKVTAEKMYQL-GIYTGLDLKNKTLEYLEQHFG 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQ 181
+S F+ ++ G+ + R KSI +ERTF+ + + +L IA + ++
Sbjct: 221 NSGQAFY-NLSRGISYSQVKPNRQMKSIGAERTFNENLSSEIYMEERLENIASEIERRIK 279
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
K + G+T+TLK+K + F +TR+ TL +I+ I++ A LL E L S+RL+G+
Sbjct: 280 KYKISGKTITLKIKYSDFTQQTRSKTLPYFIADKSLIMETAKELLYQERLKDSVRLLGIS 339
Query: 241 VTQFNEDK 248
+ N ++
Sbjct: 340 LNNLNTNQ 347
>gi|305665931|ref|YP_003862218.1| DNA polymerase IV [Maribacter sp. HTCC2170]
gi|88710706|gb|EAR02938.1| DNA polymerase IV [Maribacter sp. HTCC2170]
Length = 366
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 10/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S IA+E+R + +E GL SAG++ N+ +AKV SD NKPN
Sbjct: 106 SLDEAYLDVT-VNKKGNPSATLIAQEIRKRIQDEVGLKASAGISVNKFVAKVASDFNKPN 164
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V P + V+ F+ L IR G+GKVT + + GI T +E+ K L F
Sbjct: 165 GQKTVNPEE---VLQFLEDLEIRSFFGVGKVTAEKMYKL-GIFTGKELKTKSEEFLIENF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S + + V G+ + R KS+ +ERTFS + + +L IA L +
Sbjct: 221 GKSGSHYH-KVVRGIHNGAVKPHRVPKSVGAERTFSENLSSEIFMLERLEHIANELERRL 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
K + G+T+TLK+K + F ++TR+ TL ++S+ IL+ A LL E + S+RL+G+
Sbjct: 280 SKTKIAGKTVTLKIKYSDFTLQTRSKTLPYFVSNKSLILEVAKELLYQEKMENSVRLLGI 339
Query: 240 RVTQFN 245
+ N
Sbjct: 340 SLANLN 345
>gi|443243201|ref|YP_007376426.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
gi|442800600|gb|AGC76405.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
Length = 349
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 140/249 (56%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + + I IA E+R +YE G+T SAG++ N+ +AK+ SD NKPN
Sbjct: 92 SLDEAYLDVTENKYDFPSATI-IAYEIRRRIYETTGITASAGISVNKFIAKIASDYNKPN 150
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ ++P + + + + RK GIGKVT + FGI T +++ +K L F
Sbjct: 151 GQKTIVPEEIIEFLEELEI---RKFHGIGKVTAEKMYQ-FGIFTGKDLKRKSLEFLVENF 206
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
S + ++ + G+ + R RKS+ +ERTFS + + +L +IAE + +
Sbjct: 207 GKSGSHYY-KIVRGIHKSPVKPDRIRKSLGAERTFSENISSEVFMKERLIQIAEEIEKRI 265
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
K + G+T+TLK+K F+ +TR+ TL +I + IL A L++ E S+RL+G+
Sbjct: 266 AKSDVSGKTVTLKIKYRDFKTQTRSKTLPYFIRDKQTILNTAIELMEQESFRESVRLLGI 325
Query: 240 RVTQFNEDK 248
++ N K
Sbjct: 326 TLSNLNTGK 334
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL
Sbjct: 161 GQFVLPPYK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|417548493|ref|ZP_12199574.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
gi|417566604|ref|ZP_12217476.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|395552276|gb|EJG18284.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|400388792|gb|EJP51864.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
Length = 351
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQGLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|256379783|ref|YP_003103443.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
gi|255924086|gb|ACU39597.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
Length = 430
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 10/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+ R + EIA +R V E G+TCS GVA + LAK+ S + KP+
Sbjct: 126 SLDEAFLDVGGALRRLRATPAEIAARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPD 185
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+P DR + F+ LP+ + G+GK T L D G+ T ++ L L
Sbjct: 186 GLMVVPKDR--ALEFLHPLPVGALWGVGKRTAEQL-DRLGLETVGDVAAAPLLRLRKAVG 242
Query: 123 HSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTE-DKALLYRKLAEIAEMLSAD 179
+ A+ + L G + P + KSI +E TF V D+A+L +L ++E +A
Sbjct: 243 VALAEHLYA--LARGHDDRPVVPYTREKSIGAEETFEVDHFDRAVLKLELLRLSERTAAS 300
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIG 238
++ +GLRGRT+++K++ A F TR+ TL+ + ++ A+ LL +P ++RLIG
Sbjct: 301 LRAKGLRGRTVSIKVRFADFTTITRSKTLRVATDVAREVYATATSLLDDHVPPGAVRLIG 360
Query: 239 LRVTQFNE 246
+RV Q +E
Sbjct: 361 VRVEQLSE 368
>gi|416187210|ref|ZP_11614132.1| DNA polymerase IV, partial [Neisseria meningitidis M0579]
gi|325136557|gb|EGC59160.1| DNA polymerase IV [Neisseria meningitidis M0579]
Length = 264
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 14 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 72
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 73 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 125
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 126 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 185
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 186 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 244
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 245 LIGIGV 250
>gi|384141455|ref|YP_005524165.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385235754|ref|YP_005797093.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|387125587|ref|YP_006291469.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|416150487|ref|ZP_11603372.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|417571512|ref|ZP_12222369.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|417874790|ref|ZP_12519632.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|421205151|ref|ZP_15662251.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|421536653|ref|ZP_15982890.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|421665373|ref|ZP_16105491.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|421670582|ref|ZP_16110574.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|421701851|ref|ZP_16141338.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|421705664|ref|ZP_16145086.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|424054052|ref|ZP_17791583.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|425754620|ref|ZP_18872477.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
gi|323516262|gb|ADX90643.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|333363953|gb|EGK45967.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|342227896|gb|EGT92804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|347591948|gb|AEP04669.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385880079|gb|AFI97174.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|395551960|gb|EJG17969.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|398325341|gb|EJN41519.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|404667538|gb|EKB35459.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|407195442|gb|EKE66575.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|407195695|gb|EKE66822.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|409985414|gb|EKO41630.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|410384422|gb|EKP36931.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|410390444|gb|EKP42833.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|425496514|gb|EKU62640.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
Length = 351
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|169797618|ref|YP_001715411.1| DNA polymerase IV [Acinetobacter baumannii AYE]
gi|184156526|ref|YP_001844865.1| DNA polymerase IV [Acinetobacter baumannii ACICU]
gi|215484969|ref|YP_002327210.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|239502137|ref|ZP_04661447.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB900]
gi|260556426|ref|ZP_05828645.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301510902|ref|ZP_07236139.1| DNA polymerase IV [Acinetobacter baumannii AB058]
gi|332851008|ref|ZP_08433143.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332865620|ref|ZP_08436453.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332875005|ref|ZP_08442852.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|384130174|ref|YP_005512786.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|403673120|ref|ZP_10935433.1| DNA polymerase IV [Acinetobacter sp. NCTC 10304]
gi|417554988|ref|ZP_12206057.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|417563117|ref|ZP_12213996.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|417577028|ref|ZP_12227873.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|417870856|ref|ZP_12515804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|417880013|ref|ZP_12524558.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|417884379|ref|ZP_12528580.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|421201172|ref|ZP_15658331.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|421456702|ref|ZP_15906040.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|421623016|ref|ZP_16063906.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|421627446|ref|ZP_16068256.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|421629411|ref|ZP_16070144.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|421634758|ref|ZP_16075369.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|421644682|ref|ZP_16085159.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|421647102|ref|ZP_16087533.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|421649774|ref|ZP_16090157.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|421658940|ref|ZP_16099167.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|421662434|ref|ZP_16102599.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|421673404|ref|ZP_16113344.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|421680541|ref|ZP_16120395.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|421687638|ref|ZP_16127358.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|421689691|ref|ZP_16129365.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|421695286|ref|ZP_16134895.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|421699297|ref|ZP_16138830.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|421791630|ref|ZP_16227802.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|421796731|ref|ZP_16232787.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|421802523|ref|ZP_16238472.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|421806537|ref|ZP_16242400.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|424061480|ref|ZP_17798969.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|424064969|ref|ZP_17802453.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|425749660|ref|ZP_18867631.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|445397472|ref|ZP_21429297.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|445462986|ref|ZP_21449183.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|445480792|ref|ZP_21455703.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|445487709|ref|ZP_21457924.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|169150545|emb|CAM88453.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AYE]
gi|183208120|gb|ACC55518.1| Nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
ACICU]
gi|193076069|gb|ABO10667.2| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
gi|213988136|gb|ACJ58435.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|260410481|gb|EEX03780.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506394|gb|ADX01848.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|332730291|gb|EGJ61615.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332735209|gb|EGJ66287.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332736815|gb|EGJ67795.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|342226754|gb|EGT91714.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|342226802|gb|EGT91760.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|342234417|gb|EGT99076.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|395525699|gb|EJG13788.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|395563204|gb|EJG24857.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|395570249|gb|EJG30911.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|400210406|gb|EJO41375.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|400391405|gb|EJP58452.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|404564254|gb|EKA69436.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|404565597|gb|EKA70761.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|404566300|gb|EKA71456.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|404571691|gb|EKA76742.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|404666357|gb|EKB34304.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|404673052|gb|EKB40856.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|408504675|gb|EKK06416.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|408512515|gb|EKK14156.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|408516896|gb|EKK18455.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|408693128|gb|EKL38740.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|408693899|gb|EKL39494.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|408701548|gb|EKL46975.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|408703781|gb|EKL49163.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|408709114|gb|EKL54373.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|408714774|gb|EKL59907.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|410386265|gb|EKP38738.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|410389456|gb|EKP41870.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|410398429|gb|EKP50648.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|410402559|gb|EKP54674.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|410414716|gb|EKP66512.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|410417717|gb|EKP69486.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|425488001|gb|EKU54342.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|444768127|gb|ELW92346.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|444771115|gb|ELW95248.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|444780511|gb|ELX04458.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|444784058|gb|ELX07889.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|452954105|gb|EME59509.1| DNA polymerase IV [Acinetobacter baumannii MSP4-16]
Length = 351
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 92 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 151 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 203
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 204 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 263
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 264 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 322
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 323 LIGIGV 328
>gi|445453449|ref|ZP_21445121.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
gi|444753425|gb|ELW78075.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
Length = 351
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|403376374|gb|EJY88163.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 685
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 139/256 (54%), Gaps = 15/256 (5%)
Query: 6 DEAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
DEA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NK
Sbjct: 367 DEANLDITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNK 426
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCA 119
PNGQ L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 427 PNGQTYLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQI 483
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEML 176
T F LG+ S N + +KSIS TF K+ ++ L
Sbjct: 484 ALKERTVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTEL 542
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LR 235
+ + K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P R
Sbjct: 543 AERVDKRKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPAR 602
Query: 236 LIGLRVTQF-NEDKVR 250
LIG++++ N+ +V+
Sbjct: 603 LIGVKLSHLKNQHEVK 618
>gi|390933370|ref|YP_006390875.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389568871|gb|AFK85276.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 379
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 143/253 (56%), Gaps = 11/253 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 101 SIDEAYLDVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPD 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFS 122
G V+ D V + L + K+ GIGK + L+ + G+ +++L+ L +F
Sbjct: 157 GLMVITED--MVPDILRPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELRNIFG 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ S R KSI E T T D LL + L A ++S++++
Sbjct: 214 KYGKEIYDRIR-GIDSRPVETYRETKSIGKETTLKKDTSDVDLLLKYLRGFANIVSSELK 272
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLR 240
EGL RT+T+K+KT++F V TR+ TL +YI +DI A S+ +A++ +RLIGL
Sbjct: 273 SEGLYCRTVTVKIKTSNFIVHTRSRTLNEYIDLPDDIYSVAESIFKEAKIIQPVRLIGLS 332
Query: 241 VTQFNEDKVRAPS 253
V+ + K++ S
Sbjct: 333 VSNLSAIKIKQLS 345
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 128/213 (60%), Gaps = 11/213 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKP
Sbjct: 105 SLDEAYLDVTE--NKKGIESANQIALEIRKKIFEKTGLTASAGISVNKFLAKVASDINKP 162
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
NGQ + P + V++F+ LPI K GIGKVT + + + I +++ K L +
Sbjct: 163 NGQKTIHPQN---VLSFLEELPIEKFYGIGKVTANKM-NTLSIYKGKDLKNKSLEELVLL 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
F S ++ +V G+ + R KS++ E TF D+ ++ K+ EI + L
Sbjct: 219 FGKSGKHYY-NVVRGIQYSEVKPHRIAKSVAVEETFWEDLLDEDTVFEKIDEITDELFRR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYI 212
+++ G++G+TLTLK+K F + TR+ T +Y+
Sbjct: 278 LERSGIKGKTLTLKIKYKDFTLFTRSKTESQYL 310
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 92 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 151 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 203
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 204 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 263
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 264 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFR 322
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 323 LIGIGV 328
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S DEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SPDEAYLDVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|334345787|ref|YP_004554339.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
gi|334102409|gb|AEG49833.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
Length = 359
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+
Sbjct: 104 SLDEAYLDVTR-NKPDIPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPD 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ + A FI+ +P+R+I G+G VT ++ GI T ++ +
Sbjct: 163 GICVVRPEEGA--AFIAKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLAFLQHHFG 219
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
S A F+ G + + RKS+S E TF +T + AL+ ++ IAE L + ++
Sbjct: 220 SAALFYYRASRGEDDRPVHERQERKSVSVEDTFFDDLTAEDALIT-EIDRIAENLWSRIE 278
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGL 239
K G GRT+ LK+K A F + TR+ + + S + + + LL+A+LP+ + RL+GL
Sbjct: 279 KSGAYGRTVVLKVKFADFRIITRSKSFGGPVRSPDILAETGRALLRAQLPLRMGARLLGL 338
Query: 240 RVTQFNEDK 248
V + ++
Sbjct: 339 GVHNLDHEE 347
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S DEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 118 SPDEAYLDVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL
Sbjct: 177 GQFVLPPHK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 229
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 230 NHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQ 289
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 290 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 348
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 349 LIGIGV 354
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S DEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 118 SPDEAYLDVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL
Sbjct: 177 GQFVLPPHK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 229
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 230 NHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQ 289
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 290 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 348
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 349 LIGIGV 354
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPQK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCVALLQ-AVQMLMARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 150 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 208
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 209 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 261
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 262 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 321
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 322 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 380
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 381 LIGIGV 386
>gi|213155590|ref|YP_002317635.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|301346037|ref|ZP_07226778.1| DNA polymerase IV [Acinetobacter baumannii AB056]
gi|301596200|ref|ZP_07241208.1| DNA polymerase IV [Acinetobacter baumannii AB059]
gi|417575406|ref|ZP_12226259.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|421788645|ref|ZP_16224929.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|421799153|ref|ZP_16235155.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
gi|213054750|gb|ACJ39652.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|400206139|gb|EJO37119.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|410401585|gb|EKP53724.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|410410628|gb|EKP62527.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
Length = 351
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMYIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|307110508|gb|EFN58744.1| hypothetical protein CHLNCDRAFT_140443 [Chlorella variabilis]
Length = 864
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA LD T+ C RG+ G ++A E+R V ++ GLTCS G+APNR+LAK+CSD NKPN
Sbjct: 186 SLDEAALDATDCCAARGLGGGQVAAEIRRRVQQDTGLTCSVGIAPNRMLAKICSDRNKPN 245
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
GQF L R AVM F+ L IRK+ G+GKVT+ L F + TC ++L LL
Sbjct: 246 GQFELEPRREAVMDFMRDLSIRKVPGVGKVTQKYL-AAFEVQTCGDLLTHKGLL 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 253
++RTRA TL ++IS+++D+ A LL AELP LRL+GLRV+ F + RAP
Sbjct: 298 LQLRTRAQTLPRHISAADDLFAAARRLLLAELPCELRLLGLRVSGFLQAPRRAPG 352
>gi|403376378|gb|EJY88165.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 705
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 139/256 (54%), Gaps = 15/256 (5%)
Query: 6 DEAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
DEA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NK
Sbjct: 266 DEANLDITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNK 325
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCA 119
PNGQ L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 326 PNGQTYLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQI 382
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEML 176
T F LG+ S N + +KSIS TF K+ ++ L
Sbjct: 383 ALKERTVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTEL 441
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LR 235
+ + K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P R
Sbjct: 442 AERVDKRKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPAR 501
Query: 236 LIGLRVTQF-NEDKVR 250
LIG++++ N+ +V+
Sbjct: 502 LIGVKLSHLKNQHEVK 517
>gi|254283888|ref|ZP_04958856.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
gi|219680091|gb|EED36440.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 140/265 (52%), Gaps = 12/265 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++E RER S E AE +R ++EE GLT SAGV+ N+ LAKV SD NKPN
Sbjct: 108 SLDEAYLDVSE-DRERVGSATETAERIRREIFEEVGLTASAGVSYNKFLAKVASDQNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G V+ P++ A F + LP R+ G+G T + GI++ ++ Q L F
Sbjct: 167 GLCVIRPHEGAA---FAAGLPARRFFGVGPKTAQRM-AALGIHSGADLRAQSLDFLQQHF 222
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S A + G R RKSI ERT+S + L L +I +++ +
Sbjct: 223 GKS-ALYLYRASRGEDFREVRPNRERKSIGGERTYSTDLKHSQELRAALVDIIDLVWRRI 281
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ RGRT+TLK+K + F TRA ++ I S E + A LL+ LPV +RLIG
Sbjct: 282 EARTARGRTVTLKIKFSDFRQITRARSVHSCIDSLEGFSQIAHALLETVLPVERGVRLIG 341
Query: 239 LRVTQF-NEDKVRAPSDPTQKTLTN 262
L ++ + D + ++P K LT
Sbjct: 342 LTLSSLESSDAPTSSAEPATKALTQ 366
>gi|433656055|ref|YP_007299763.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294244|gb|AGB20066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 379
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 143/254 (56%), Gaps = 13/254 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 101 SIDEAYLDVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPD 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + L + K+ GIG+ + L+ + GI +++L+ L +F
Sbjct: 157 GLMVITED--MVPDILRPLNVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFG 213
Query: 123 HSTADFFLSV-GLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ L T R KSI E T T+D +L + L + +S ++
Sbjct: 214 KYGKEIYDRIRGIDLRPVET--YRETKSIGKETTLKEDTDDIEILSKYLGGFSRTISLEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGL 239
+KE L RT+T+K+KT +F V T++ TL +YI S EDI AS +LK + + +RLIGL
Sbjct: 272 KKEKLYCRTVTVKIKTWNFTVHTKSRTLNEYIDSPEDIYNVASSILKESNISQPVRLIGL 331
Query: 240 RVTQFNEDKVRAPS 253
V+ + + ++ S
Sbjct: 332 SVSNLSTNNIKQLS 345
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + ++A+ +R ++ + GLT SAGVAPN+ LAK+ SD KPN
Sbjct: 133 SLDEAYLDVTRNFQNIPYAS-QVAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPN 191
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVF 121
GQFVLP +++A F+ +LP KI G+GKVT ++ + GI+T ++L ++G L +F
Sbjct: 192 GQFVLPPEKVA--EFLHTLPPEKIPGVGKVTRLKMQSL-GIDTVGDLLRFERGE-LANLF 247
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+ + G+ + +R R IS+E T + ED L + L +A+ L
Sbjct: 248 GKWGYRLY-ELARGIDNRAVKPSRERVQISTEIT--LPEDLPLNQILLHLPHLADDLWQQ 304
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELPVSLRL 236
++ R++TLKLKTA F + TR+ T + + +L+ A S L L + RL
Sbjct: 305 AARKKAAFRSVTLKLKTADFRIITRSQTFSSPLPDAASLLQAAHQISTRLPHTLHATYRL 364
Query: 237 IGLRVTQFNED 247
IGL V+ +
Sbjct: 365 IGLGVSHLEPN 375
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 134/248 (54%), Gaps = 15/248 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTHNFKNIPYAS-EVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + +M F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--IMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR--KLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED +L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLSLEQAGGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ ++ + + +TLKLKT F + TR++T + + +L A L++ P + RL
Sbjct: 274 ITRKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDIDALLCAAQTLMQRVPPQHEDAFRL 333
Query: 237 IGLRVTQF 244
IG+ V
Sbjct: 334 IGIGVNHL 341
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL
Sbjct: 161 GQFVLPPYK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 7/244 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+
Sbjct: 111 SLDEAFLDVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPH 169
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+P +R + F++ LP+ K+ G+G T L G+ T ++
Sbjct: 170 GLFVIPPERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG 226
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ +F V + +R RKS+ +ERTFS ED++++ L E+A ++A +Q
Sbjct: 227 KSGGWFYDVARAIDERPVQPSRQRKSVGTERTFSKNLEDRSVMRTTLQEMAAQVAARLQA 286
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLR 240
L G T+ +K + F TRA T + I S + I LL +P S+RL+G+
Sbjct: 287 LNLAGHTVNIKARFPDFTTVTRAYTATEGIGSVDAIAALLPELLDRAVPKSASVRLLGIT 346
Query: 241 VTQF 244
V+
Sbjct: 347 VSSL 350
>gi|421563647|ref|ZP_16009463.1| DNA polymerase IV [Neisseria meningitidis NM2795]
gi|421907165|ref|ZP_16337050.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|393291682|emb|CCI73036.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|402340132|gb|EJU75335.1| DNA polymerase IV [Neisseria meningitidis NM2795]
Length = 352
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 21/248 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+H + L + P R R IS+E T + ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARSTDERPVEAERERLQISTEIT--LPEDLPLEQAAGHLPHLAEDLW 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----S 233
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P +
Sbjct: 272 RQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSILPDCAALLQAAQMLM-ARVPPQTEDA 330
Query: 234 LRLIGLRV 241
RLIG+ V
Sbjct: 331 FRLIGIGV 338
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S IA+E+R + E GLT SAGV+ N+ LAK+ SDINKPN
Sbjct: 100 SLDEAYLDVTE-NKKNMTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPN 158
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G + + P + +A F+ L + K G+GKVT + ++ GI T ++ Q+ F
Sbjct: 159 GIKVITPEEAIA---FLEQLAVEKFHGVGKVTARKMHNM-GIYTGGDLKQRSEADLVRFF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
++ + + R RKSI +ERTF+ D ++ KL ++AE + M
Sbjct: 215 GKAGRYYYRIVRAEDNREVNPHRIRKSIGAERTFNEDVSDPEIMKNKLTDLAEGVHRYMD 274
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIG 238
K GRT+TLKLK+ F++ TR+ + I + +++++ LL E P+ +RL+G
Sbjct: 275 KTQNFGRTVTLKLKSPDFKILTRSRSFASEIRNLDELIRIVHDLLDQHIEEAPI-VRLLG 333
Query: 239 LRVTQFNED 247
+ ++ ++
Sbjct: 334 VTLSNLEKE 342
>gi|326386774|ref|ZP_08208395.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
gi|326208827|gb|EGD59623.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
Length = 380
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R G S IAE +R + E GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 114 SLDEAYLDVTADLRGIG-SATRIAEIIRQRIRAETGLTASAGVSYNKFLAKLASDQNKPD 172
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ A F++ LP+ + GIG + + GI T ++ +G L + H
Sbjct: 173 GLCVIRPGEGA--DFVAGLPVARFHGIGPRGAERM-EALGIRTGADL--RGVELAVLRKH 227
Query: 124 --STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADM 180
+ AD+ G+ + R RKS+ ERTF R+ L +I E++ A +
Sbjct: 228 FGAQADYLFRAARGIDLRSVEPDRPRKSVGGERTFDRDLSSGTALREALDKITEIVWARI 287
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
K G+ GRT+TLKLKT+ F+ TRA + + ++ ++ + LL A LP+ +RL+G
Sbjct: 288 VKAGVHGRTVTLKLKTSDFQAITRARSFARPVADQDEFARAGRELLDALLPLPQPIRLMG 347
Query: 239 LRVTQFN 245
L ++ +
Sbjct: 348 LTLSGLD 354
>gi|329893969|ref|ZP_08269988.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
gi|328923368|gb|EGG30686.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
Length = 361
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ R G S ++IA +R S+YEE LT SAG++ N+ +AK+ SD NKPN
Sbjct: 92 SLDEAYLDVTQDKRGVG-SAVKIAHMIRKSIYEELNLTASAGISYNKFIAKIASDQNKPN 150
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
GQ VLP++ A F+ LP+R+ G+G K E + R + T ++ A
Sbjct: 151 GQCVVLPDEGEA---FVGQLPVRRFYGVGPKTAEKMAR--LNLQTGADIRACSLAFLAEN 205
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSA 178
S+AD+ G+ R RKS+ +ERT+ ED + L + IAE +
Sbjct: 206 FGSSADYLYKASRGVDHRPVRPNRIRKSVGAERTY--PEDLSQLESLREAVVSIAEEVWV 263
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
QK G +G+T TLK+K F+ TRA++L S ++ + LL+ E P+ +RL
Sbjct: 264 RSQKNGCQGKTATLKIKFNDFQQITRAMSLDHLFGSEAELREVLLGLLQKEWPLRRPVRL 323
Query: 237 IGLRVT 242
+G +++
Sbjct: 324 VGAQLS 329
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + GI S ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP
Sbjct: 138 SLDEAYLDVT--VNKLGIASATQVAQMIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKP 195
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V+ P + A F+ +LPIR+ G+G E + + GI T ++ K + A
Sbjct: 196 DGMCVIRPGEGAA---FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDAAWLAQH 251
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADM 180
S D+ G+ R RKS+ ERTFSV +A R L EI +++ +
Sbjct: 252 FGSFGDYLYRAARGIDDRPVRANRIRKSVGGERTFSVDRHEAEELRTTLDEIVDIVWERI 311
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI--LKHASVLLKAELPVSLRLIG 238
++ RGRT+TLKLK F++ TRA +L + ++ + + HA + LP +RL+G
Sbjct: 312 ERAQARGRTVTLKLKYNDFQLMTRARSLPRNVADKAEFAAIGHAILDELLPLPRPIRLMG 371
Query: 239 LRVTQFNED 247
L ++ D
Sbjct: 372 LTLSNLERD 380
>gi|16119697|ref|NP_396403.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
gi|22095614|sp|Q8UJK7.2|DPO42_AGRT5 RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
gi|15162281|gb|AAK90844.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
Length = 357
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 100 SLDEAYLDVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPN 158
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + FGI T ++ K A
Sbjct: 159 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFSV D L +L +AE + +
Sbjct: 215 GKSGAYFYGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCE 274
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ + G+T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+
Sbjct: 275 AQRVSGKTVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGV 334
Query: 240 RVTQFNEDK 248
++ D+
Sbjct: 335 TLSSLTNDQ 343
>gi|260551121|ref|ZP_05825325.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|424057302|ref|ZP_17794819.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
gi|260405888|gb|EEW99376.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|407440835|gb|EKF47352.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
Length = 351
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 15/249 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ + V +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQ--VGSFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS----LRL 236
+K+ L R + +KLK +F+ + + + I S +D+++ +LL E+ +S RL
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLN-EMHISENFQFRL 331
Query: 237 IGLRVTQFN 245
IG+ V Q
Sbjct: 332 IGIGVYQLQ 340
>gi|335037525|ref|ZP_08530830.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
gi|333790976|gb|EGL62368.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
Length = 365
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 108 SLDEAYLDVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + FGI T ++ K A
Sbjct: 167 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHF 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFSV D L +L +AE + +
Sbjct: 223 GKSGAYFYGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCE 282
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ + G+T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+
Sbjct: 283 AQRVSGKTVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGV 342
Query: 240 RVTQFNEDK 248
++ D+
Sbjct: 343 TLSSLTNDQ 351
>gi|425743150|ref|ZP_18861241.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
gi|425484302|gb|EKU50707.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
Length = 351
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|212703647|ref|ZP_03311775.1| hypothetical protein DESPIG_01692 [Desulfovibrio piger ATCC 29098]
gi|212672942|gb|EEB33425.1| ImpB/MucB/SamB family protein [Desulfovibrio piger ATCC 29098]
Length = 407
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 139/265 (52%), Gaps = 18/265 (6%)
Query: 3 ASLDEAYLDITEVCRERGISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 60
AS+DEAYLD T + ER +E + ++ V E GLTCS G AP + LAK+CSDIN
Sbjct: 106 ASIDEAYLDATGL--ERLFGPVEQLIPAIKARVREVTGGLTCSVGAAPVKFLAKICSDIN 163
Query: 61 KPNGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+G ++L P D V F+ L +R++ G+G+ L + GI E++ + L
Sbjct: 164 KPDGIYILRPED---VDGFLGGLDVRRLPGVGRRMVAEL-EALGIRRVEQLRRYSPELLE 219
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
+ G+ KS S+E TF+ T D+ L L AE + A
Sbjct: 220 QRFGKWGRELHARARGIDPRPVVPEHEAKSESAETTFARDTRDREFLKTMLLGHAERVGA 279
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLI 237
+++ GLR RT+TLK+K A F TR+ TL + +S+E I + + LL+AE LP +RLI
Sbjct: 280 SLRRHGLRSRTVTLKIKFADFRQITRSRTLSEATNSTETIYETGTALLEAEALPQPVRLI 339
Query: 238 GLRVTQFNEDKVRAPSDPTQKTLTN 262
GL V+ F S PTQ+ L
Sbjct: 340 GLGVSGFG-------SAPTQELLPG 357
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 25/250 (10%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T R I E+A+E+R +++ E GLT SAG+A N+ LAK+ SD
Sbjct: 102 SLDEAYLDVT-----RNFKNIPYDSEVAKEIRAAIFAETGLTASAGIASNKFLAKIASDW 156
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLL 117
KPNGQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 157 RKPNGQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL 213
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEM 175
+H + L G+ P R+ + ++ ED L L +AE
Sbjct: 214 ----NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAED 269
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--- 232
L + ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 270 LWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTE 328
Query: 233 -SLRLIGLRV 241
+ RLIG+ V
Sbjct: 329 DAFRLIGIGV 338
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 136/253 (53%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +RT + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGIELATDIARTIRTQIREETRLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F+ SLP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLLSLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 215 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 149/262 (56%), Gaps = 34/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T+ + S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTDNKLDIK-SAVKIAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPR 172
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP D ++F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 173 GLTLVLPQD---ALSFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPE 221
Query: 123 HSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEI 172
+ D F G L G +++P R RKSI SERT++ LLY++ AEI
Sbjct: 222 MTLIDHFGRFGFDLYRKARGISHSPVKPDRIRKSIGSERTYA-----KLLYQETDIKAEI 276
Query: 173 ---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA- 228
A+ ++A +Q+ G+T+ LK++ A F T+ VTL + + I + A+ + +
Sbjct: 277 SKNAKRVAALLQEHKKLGKTVVLKVRYADFTTLTKRVTLTELTREAAQIEQVAADIFDSL 336
Query: 229 -ELPVSLRLIGLRVTQFNEDKV 249
E PV +RL+G+ +T EDKV
Sbjct: 337 IENPVGIRLLGVTMTNL-EDKV 357
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 142/251 (56%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE R G+ + + A E+R+ ++ E GLT SAGV+ N+ LAK+ SD++KP
Sbjct: 105 SLDEAYLDVTENLR--GLPTAADTATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
NGQFV+P R A FI +L ++K G+G VT L + GI T ++ Q L F
Sbjct: 163 NGQFVIPPQRGA--EFIEALAVKKFHGVGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSA 178
S ++ ++ G R RKS SE TF ED+ L + + E+A+ +
Sbjct: 220 GKS-GGWYYAIARGEDDRPVEPNRPRKSSGSETTFP--EDRFLPAEIEEGVLEMADDVWV 276
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRL 236
+K G T+T+K+K F++ TR+ T+ I++ + + + L+++ PVS +RL
Sbjct: 277 WCEKNRSFGATVTVKIKYTDFQIITRSRTVTAPIATHDRLRDISLSLVRSVYPVSKGIRL 336
Query: 237 IGLRVTQFNED 247
+G+ V++F D
Sbjct: 337 VGVAVSKFVSD 347
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 148/268 (55%), Gaps = 20/268 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI S I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP
Sbjct: 104 SLDEAYLDVTE--DKQGIGSAIDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G F+ P+ V+ F+ LPI K G+GKVT ++ + GI+ +M Q
Sbjct: 162 DGLTFIGPSK---VVAFMEHLPIEKFFGVGKVTASKMKKL-GIHRGADMKQWTQEALTRH 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
T FF ++ G+ + R KSIS E TF+ D +L L E++ L+ +
Sbjct: 218 FGKTGKFFYNIVRGVDNRPVQPNRQTKSISVEDTFAQDIADLQVLEDILKELSGRLAKRL 277
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRL 236
+ L G+T+TLK+K + F TR++T + ++ E + + AS LL AE+ V RL
Sbjct: 278 NAKQLAGKTVTLKVKFSDFSQATRSMTSLEVVTGEEVLYQIASELLNKVSLAEMKV--RL 335
Query: 237 IGLRVTQF-NEDKVRAPSDPTQKTLTNF 263
+G+ V+ F ED P + LT F
Sbjct: 336 LGVGVSNFTGED----PDQQINRQLTLF 359
>gi|445429972|ref|ZP_21438363.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
gi|444761010|gb|ELW85437.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
Length = 351
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 136/248 (54%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ ++A FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLFVIKPSQVA--NFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 12/227 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM 320
>gi|421766181|ref|ZP_16202958.1| DNA polymerase IV [Lactococcus garvieae DCC43]
gi|407625350|gb|EKF52056.1| DNA polymerase IV [Lactococcus garvieae DCC43]
Length = 365
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 22/260 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ +Y E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTE-NKIGSTSAIKIAKLIQHDIYVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCA 119
P+G ++P+D F++ LP+ K G+GK T L D+ GI ++ + L L
Sbjct: 171 PHGLTVIMPDD---AKEFLAELPVEKFHGVGKATGAKLHDM-GIFKGTDIQKVDPLDLAD 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + FL G+ + +R RKS+ ERT+ LLY ++LA ++
Sbjct: 227 RFGIYGWNLFLKAN-GIHDSAVVTSRQRKSVGKERTYG-----KLLYQIEDIKQELANLS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
E +S ++ + L G T+ LKL+ + F T+ L + IS ++DI A LL+ +
Sbjct: 281 ERVSRNLNQHQLTGDTVVLKLRYSDFRTLTKRKKLAEKISKADDIAHTAHDLLEEIDYDD 340
Query: 231 PVSLRLIGLRVTQFNEDKVR 250
+ +RL+G+ +T F +++R
Sbjct: 341 TLGVRLLGVTLTGFGVEELR 360
>gi|399924340|ref|ZP_10781698.1| DNA polymerase IV [Peptoniphilus rhinitidis 1-13]
Length = 348
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 134/253 (52%), Gaps = 11/253 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE+YLDI + + I E++ VY GL S G++ N+ LAK+ SD NKP
Sbjct: 99 VSIDESYLDIEGLGYDENI-----VYEIQKDVYNRTGLNVSIGMSYNKFLAKLASDWNKP 153
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
G ++ + + F L IRK+ GIGK +E LR++ GINT EE+ L ++F
Sbjct: 154 KGIMIIKKRDIPEILF--PLDIRKVHGIGKKSEKKLRNI-GINTVEELYSLSYDFLVSMF 210
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
S + + + G+ + RKS+ +E TF VT + L L E + +S D+
Sbjct: 211 KKSGEEIYNRIR-GIDNRKVTPNTVRKSLGTETTFEVTSKRDELIGYLKEFSHEISEDLI 269
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLR 240
+ + G TLTLK+K F+V+TR+ T +K I + +DI K + + +A LRLIG+
Sbjct: 270 VKEISGYTLTLKMKNEDFKVKTRSKTYEKAIYAEDDIYKKSLEIFDEAYGGEKLRLIGIT 329
Query: 241 VTQFNEDKVRAPS 253
++ + +R S
Sbjct: 330 ISNLADLSIRQLS 342
>gi|304382732|ref|ZP_07365223.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
gi|304336127|gb|EFM02372.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
Length = 400
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 16/247 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LDIT ++GI ++IA+E+R S+ EE LT SAG++ N+ LAK+ SD KP
Sbjct: 139 SLDEAFLDITH--NKKGIEMAVDIAKEIRQSIREELHLTASAGISYNKFLAKIASDFRKP 196
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G FV+ DR + FI+ LPI G+G T + + + + L VF
Sbjct: 197 DGLFVIHPDR--ALDFIARLPIHDFWGVGSKTAAVFHKMGVFDGAQLRACSRRHLTEVFG 254
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ A ++ G+ R RKS+S E+TF + + +L +L E L +
Sbjct: 255 KAGAMYY-EFARGIDHRPVVTERERKSVSCEQTFEEDIYSNSTVLI-ELYHTMEDLVRRL 312
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-----ELPVSLR 235
+K G G TLTLK+K F TR++T K + S DIL A LLK+ E P+ R
Sbjct: 313 EKTGFEGHTLTLKIKYGDFSQVTRSMTTGKTLRSKADILPRAKQLLKSISWSVEKPI--R 370
Query: 236 LIGLRVT 242
LIGL V+
Sbjct: 371 LIGLAVS 377
>gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
gi|151280059|gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
Length = 401
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 15/260 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D++E E +A ++ +V + GL+CS G+APN+LLAK+CSD+ KPN
Sbjct: 141 GIDEIYIDLSEHAEETH----ALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPN 196
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFS 122
G +L +A T I LP RKI GIG L G+NT EE+ +LL F
Sbjct: 197 GLTILTQADIA--TRIWPLPARKINGIGPRAAEKL-TALGLNTIEELAGADATLLHEHFG 253
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
S AD+ V G+ KS+S E TF D+ L + E ++
Sbjct: 254 RSYADWLGRVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAG 313
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
D++++G GRT+ +KL+ A F + TR +TL Y + I + A LK +P+ RL
Sbjct: 314 DLERKGYVGRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLK-RIPLDQPFRL 372
Query: 237 IGLRVTQFNEDKVRAPSDPT 256
+G+R+ DP
Sbjct: 373 LGVRIGTLARKDSLPAEDPV 392
>gi|443919038|gb|ELU39333.1| DNA polymerase IV [Rhizoctonia solani AG-1 IA]
Length = 664
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 1 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+AA DE YL++T VC E S + + +R VY+E GLT S GVAPN K+CSD+N
Sbjct: 183 LAAGCDEGYLNLTSVCEEANESPEVLVQRMRDEVYKETGLTMSCGVAPN----KICSDLN 238
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KPNGQ+++ DR ++ F LP+RK G V H R + + + L SLLCA
Sbjct: 239 KPNGQYIMSFDRSVILEFTRKLPMRKT--CGDVFTH--RAQLYLLSQQNKLHLHSLLCA- 293
Query: 121 FSHSTADFFLSVGLGLGSTNTPQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+L V +T P R R+S+ ERTF+ D +L L +IAE L+ D
Sbjct: 294 --------YLGVH---DNTVAPYTRDSRRSLGYERTFNPQNDSKVLLETLDKIAEGLAQD 342
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 239
+K G + L + + R Q D + + LL E P+ LRL+GL
Sbjct: 343 CEKRCCIGSGVILSIVPSINTDRVSIFPSQATAQMDNDQGRSITELLVKEFPLCLRLMGL 402
Query: 240 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKK 272
R+T + K + T L F G K
Sbjct: 403 RLTNLKDLK-----EDTNAGLKRFWAQGPGVSK 430
>gi|114321922|ref|YP_743605.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310678|sp|Q0A4X2.1|DPO4_ALHEH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|114228316|gb|ABI58115.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 355
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 140/244 (57%), Gaps = 12/244 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+++ C RG S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+
Sbjct: 103 SLDEAYLDVSD-CPRRGGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+P ++ F+++LP+ KI G+G+ T + + G+ T ++ + L
Sbjct: 162 GLHVIPPEQ--AEAFVAALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
S A F+ + G R RKS+ +E TF + A + ++A +A+ ++A + +
Sbjct: 219 SRARFYYELARGRDERPVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHR 278
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIG 238
GL GRT+TLK+K F TR+++ + + S+++I LL+ + PV RL+G
Sbjct: 279 RGLAGRTVTLKVKYHDFRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLG 335
Query: 239 LRVT 242
+ V+
Sbjct: 336 VTVS 339
>gi|393773805|ref|ZP_10362197.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
gi|392720746|gb|EIZ78219.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
Length = 373
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + G S IA+E+R + E GLT SAGV+ N+ +AK+ SD NKP+
Sbjct: 116 SLDEAYLDVTADLKGIG-SATRIAQEIRRRIRAETGLTASAGVSYNKFIAKLASDENKPD 174
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
G V+ P D A F+++LP+R+ G+G + E + R GI T ++ K + L A
Sbjct: 175 GLCVIRPGDGAA---FVAALPVRRFHGVGPRGAEKMAR--LGIETGADLASKDLAFLRAN 229
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSAD 179
F S A++ G+ R RKS+ ERT F D L + I +++
Sbjct: 230 FG-SFAEYLFRAARGVDLRQVRADRPRKSVGGERTFFENIVDPVALRETMDHIVDVVWER 288
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 237
+++ RGRT+TLKL+ A F+ TRA +L +++ + LL E+P+ +RL+
Sbjct: 289 IERSQARGRTVTLKLRYADFQTLTRARSLPHFVADKAEFAALGHALLDEEMPLPQPIRLM 348
Query: 238 GLRVT 242
GL ++
Sbjct: 349 GLTLS 353
>gi|159901912|gb|ABX10645.1| DNA-directed DNA polymerase IV [uncultured planctomycete 3FN]
Length = 384
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 12/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEA+LD+T R G EI ++T++++E L S G+APN+ LAK+ SD++KP+
Sbjct: 99 ALDEAFLDVTGSSRLFGPPE-EIGRTIKTAIHDELQLVASVGIAPNKFLAKLASDLDKPD 157
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
G FV+ N + A+ F+ LP+ ++ G+GK L D+ GI ++ L + S L F
Sbjct: 158 G-FVVVNPK-AIHAFLDPLPVTRLWGVGKAAARKL-DLIGIQHIAQLRALPRES-LADNF 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S +L + G+ + R KSIS E TF+V +D L LA++ E ++ +
Sbjct: 214 GASGDQLWL-LANGIDDRDVIPDRDAKSISHETTFAVDVDDMERLRGVLAQLTEQVARRV 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLI 237
+ LRGRT+ LK++ + F+ TR+ L + +++I + A +L LP +++RL+
Sbjct: 273 RAAELRGRTVQLKIRYSDFQTYTRSTKLSQPTDVTDEIWQAAQSMLATRLPERTLAVRLL 332
Query: 238 GLRVTQFNEDKV 249
G+ V+Q + K+
Sbjct: 333 GIGVSQLDRSKL 344
>gi|452852653|ref|YP_007494337.1| DNA polymerase IV [Desulfovibrio piezophilus]
gi|451896307|emb|CCH49186.1| DNA polymerase IV [Desulfovibrio piezophilus]
Length = 381
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 140/258 (54%), Gaps = 34/258 (13%)
Query: 3 ASLDEAYLDITEVCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AS+DEAYLD T + ER IE + E++ + + GLTCS G AP R LAK+ SD++K
Sbjct: 91 ASVDEAYLDGTGL--ERLFGPIETVGSEIKKRMRQVTGLTCSVGAAPVRFLAKIASDMDK 148
Query: 62 PNGQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCA 119
P+G F++ P+ V TF+ LP+RKI G+G K+ E + R + TC ++L
Sbjct: 149 PDGMFIIHPHQ---VETFLRDLPVRKIPGVGKKLVETLAR--LRVQTCGDIL-------- 195
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR-----------FRKSISSERTFSV-TEDKALLYR 167
H DF++ G +AR KS S+E TF T D+ L
Sbjct: 196 ---HKERDFWVERLGKYGGALHDRARGIDPNGVIVSSGAKSCSAENTFHEDTTDRETLTT 252
Query: 168 KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 227
L E AE + AD+++ G +GRT+TLK+K F+ TR+++L ++ I + A LL+
Sbjct: 253 WLLEQAERVGADLRRHGYKGRTITLKIKYTDFKQVTRSLSLDTRTDTTSVIFETACTLLR 312
Query: 228 A-ELPVSLRLIGLRVTQF 244
+L ++RLIG+ V+ F
Sbjct: 313 QLDLRRAVRLIGVGVSNF 330
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 124 SLDEAYLDVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 178
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 179 RKPDGQFVIPPQR--VDAFLQPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 235
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 236 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTW 293
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 294 KATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 352
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 353 YRLVGVGLGGFRE 365
>gi|157871750|ref|XP_001684424.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127493|emb|CAJ05435.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 598
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 14/275 (5%)
Query: 1 MAASLDEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
++ LDE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++
Sbjct: 235 VSVGLDELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNV 294
Query: 60 NKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
NKPNGQ + R V+ ++ +P+RKI GIG E L I+TC +L+ LL
Sbjct: 295 NKPNGQHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLA 353
Query: 119 AVFSHSTADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIA 173
+F T +LSVGLGL T + + + R+S+ E +FS E L+RKL E
Sbjct: 354 YLFREKTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQC 413
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--P 231
+ ++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L
Sbjct: 414 HVRCV---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHY 470
Query: 232 VSLRLIGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 265
LRLIG+R+ +F + D A + T+ LT +T
Sbjct: 471 AELRLIGVRLQRFTDIDDDHAGLNSTRDALTGALT 505
>gi|365857221|ref|ZP_09397216.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
gi|363716526|gb|EHL99927.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 139/268 (51%), Gaps = 24/268 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE +RG S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 109 SLDEAYLDVTEPLLDRG-SATAIAEEIRAAIRAETGLTASAGVSYNKFLAKMASDHRKPD 167
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ RM F+ +L I K G+G T + + GI+ ++ Q+
Sbjct: 168 GLFVI-TPRMG-PAFVETLAIGKFHGVGPATAAKM-NRLGIHNGHDLRQQTREFLQHHFG 224
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDK----ALLYRKLAEIAEM 175
D++ +V G+ + R RKS+ +E TF V ED A L+ K+ EI
Sbjct: 225 KAGDYYFNVARGVDNRPVNPDRTRKSVGAETTFERDLIVWEDAVPAMAPLFSKVWEI--- 281
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ K G GRT+T+K+K A F TR+ + ++S E + LL+ P
Sbjct: 282 ----VAKSGRGGRTVTVKVKYADFRQITRSRSCAPPLASLEMFEEIGLELLRPVFPAPEG 337
Query: 234 LRLIGLRVTQFNEDKVRAPSDPTQKTLT 261
+RL+G+ ++ F++D S P Q LT
Sbjct: 338 VRLLGVTISNFDDDTR---SHPAQLALT 362
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 96 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 154
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 155 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 207
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 208 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 267
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 268 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 318
>gi|383317865|ref|YP_005378707.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
gi|379044969|gb|AFC87025.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
Length = 370
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 138/253 (54%), Gaps = 22/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T S ++A +R +++EE GLT SAGVAPN+ LAK+ SD NKP+
Sbjct: 101 SLDEAYLDVTTNTLALP-SATQVARMIRAAIHEETGLTASAGVAPNKFLAKIASDWNKPD 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +V+ R V+ F+S LP+ K+ G+GKV E LRD GI +++ ++
Sbjct: 160 GLYVIRPSR--VLEFLSGLPVGKLPGVGKVMESRLRD-LGIQRVDQLRER---TVDQLER 213
Query: 124 STADFFL---SVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEM 175
S + L + +G+ + R RK IS+E TF +D+ L R+LAE A
Sbjct: 214 SFGRWGLRLHQLSMGIDESAVMPHRVRKQISTEDTFP--DDRRLDQLDTPVRQLAERA-- 269
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS- 233
S +++ T+ LKLKT F +R+ TL S+ DI++ A +L+ + LP
Sbjct: 270 WSTAVRQAMSHPHTIVLKLKTHDFINLSRSQTLPSPPRSAADIIEVAKMLMNRVTLPADT 329
Query: 234 -LRLIGLRVTQFN 245
RL+G+ +T F
Sbjct: 330 RYRLVGIGLTGFK 342
>gi|398808463|ref|ZP_10567326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
gi|398087495|gb|EJL78081.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
Length = 405
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 11/245 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++T++++ GLTCS GVAPN+L+AK+ S+ NKPN
Sbjct: 131 GVDEVYIDFTDVPGGQRDGGRSLARLIQTAIFDATGLTCSIGVAPNKLIAKMASEFNKPN 190
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+ + T I LP RK+ GIG + L+ FGI T ++ + L A F
Sbjct: 191 GISVVYEHDLE--TRIWPLPCRKVNGIGPKADEKLKR-FGIETVGQLAARDRDWLVATFG 247
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
+T + V G + S+S E TF D+A L + E L+A
Sbjct: 248 KATGAWMHEVAWGRDNRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEQLAA 307
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
D+Q++G G+T+ +KL+ F++ TR T++++ S ++ I +H L +P+ LRL
Sbjct: 308 DLQRKGYVGKTIGIKLRYDDFKIATRDQTIERFTSDAKTI-RHTGGLCLKRVPLERPLRL 366
Query: 237 IGLRV 241
+G+RV
Sbjct: 367 LGVRV 371
>gi|169632191|ref|YP_001705927.1| DNA polymerase IV [Acinetobacter baumannii SDF]
gi|169150983|emb|CAO99608.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii]
Length = 363
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 11/241 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G FV+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLFVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQKIEEAVLVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ + R R+ IS E TF A +AE + ++
Sbjct: 215 GKYGQQLYL-YAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQSYWHGLAEKVWQSLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIG 333
Query: 239 L 239
+
Sbjct: 334 V 334
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|163790782|ref|ZP_02185208.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
gi|159873962|gb|EDP68040.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
Length = 377
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 136/248 (54%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S I IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP
Sbjct: 119 SLDEAYLDVTE-NKKNLTSAIYIAKLIQRDIWQEVRLTSSAGVSYNKFIAKLASDYHKPA 177
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+P D+ + F+ LPI K G+GK T + ++ GI T E++ QK + L F
Sbjct: 178 GITVIPPDK--ALEFLRELPIEKFYGVGKKTVEKMHEL-GIYTGEDLYQKDEMELIQRFG 234
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSAD 179
+ V G+ + +R RKS+ E T+ TE + L +L IA +
Sbjct: 235 RMGYSLYRKV-RGIDNAPVQVSRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLS 291
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
+QK G+T+ LK++ ++FE T+ +TL Y+ E+I HA + +S +RL+
Sbjct: 292 LQKNQKHGKTVVLKVRYSNFETATKRITLPNYVKDGEEIFFHAQNIWDEIGVISRGIRLL 351
Query: 238 GLRVTQFN 245
G+ VT +
Sbjct: 352 GITVTNLD 359
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 142/249 (57%), Gaps = 14/249 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AS+DEAYLD T + ER I ++A +++T V E GLTCS G AP R LAK+ SD+NK
Sbjct: 100 ASVDEAYLDGTGL--ERLFGPIDQVARQIKTRVREVTGLTCSVGAAPVRFLAKIASDVNK 157
Query: 62 PNGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA- 119
P+G F+L P D V F+ +LP+ +I G+G LR + G TC ++L +
Sbjct: 158 PDGMFILRPED---VAGFLRTLPVGRIPGVGAKLAETLRHM-GARTCGDILGRPRSYWEQ 213
Query: 120 -VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLS 177
V + A + G+ ST TP + KS S+E TF T D+ +L R L +E +
Sbjct: 214 RVGKYGGALHDRAGGID-PSTVTPTSEA-KSCSAENTFHEDTTDREVLNRWLLAQSERVG 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRL 236
+D++ G +GRT+TLK+K A F TR+ +L ++ I + A LL + +L ++RL
Sbjct: 272 SDLRGHGYKGRTVTLKVKFADFTQITRSRSLDARTDNTALICETARDLLGQLDLRRAVRL 331
Query: 237 IGLRVTQFN 245
IG+ V+ F+
Sbjct: 332 IGVGVSNFS 340
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D M F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---AMCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + + I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNVAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|390944951|ref|YP_006408712.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
gi|390418379|gb|AFL85957.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
Length = 360
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 140/252 (55%), Gaps = 13/252 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE E S +A+E+R + + GL SAG++ N+ LAK+ SDINKPN
Sbjct: 103 SLDEAFLDVTENKFENP-SATLLAKEIRAKIKSQTGLNASAGISYNKFLAKIASDINKPN 161
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ +LP + A F+ LPI K GIGKVT ++ FGI+ +++ + L F
Sbjct: 162 GQAVILPKEAEA---FLEKLPIEKFFGIGKVTAEKMKK-FGIHQGKDLKEYSLQFLTKKF 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADM 180
S F+ ++ G+ + R RKSIS+E TF + + + L + E L +
Sbjct: 218 GKSGLHFY-NIVRGIHMSEVQPNRERKSISAENTFEKDLPTQVEWEEALKGVFEELMRRI 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+K ++GRT+TLK+K F ++TR+ + +Y E I + LL E L ++RL G+
Sbjct: 277 EKTRIKGRTITLKIKYKDFTLQTRSKSFDQY-PDKEKIWETVLELLNQERLTDAVRLFGI 335
Query: 240 RVTQFN--EDKV 249
++ N E+K+
Sbjct: 336 GISNLNLLEEKI 347
>gi|260593234|ref|ZP_05858692.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
gi|260534791|gb|EEX17408.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
Length = 362
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 144/254 (56%), Gaps = 17/254 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++GI+ ++IA++++ ++E LT SAGV+ N+LLAK+ SDI KP
Sbjct: 100 SLDEAFLDVTE--NKKGIALAVDIAKDIKQKIFERTSLTASAGVSYNKLLAKIASDIRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
NG +++ +R M FI+ LPI K+ GIG T + ++ G+ T E+ L+K S L V
Sbjct: 158 NGIYIVHPER--AMNFIARLPIEKLWGIGPKTAIKMHEM-GVFTGEQ-LRKISYNHLVQV 213
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLS 177
F + G+ +R RKS+ ERTF ED K+ + +L I L
Sbjct: 214 FG-KMGKVYYDFSRGIDERPVVISRERKSVGCERTF--LEDLHVKSKIVIELYHITLELV 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPV-SLR 235
+ + GRTLTLKLK + TR++T +K + + EDIL A LL+ E +R
Sbjct: 271 ERLSRSKFEGRTLTLKLKWDATTQITRSLTQEKILRTKEDILPLAKQLLRETEYETRPIR 330
Query: 236 LIGLRVTQFNEDKV 249
L+GL V+ D++
Sbjct: 331 LMGLSVSFPTNDEI 344
>gi|153939133|ref|YP_001392095.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|384463083|ref|YP_005675678.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
gi|152935029|gb|ABS40527.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|295320100|gb|ADG00478.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
Length = 349
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +SA++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSANL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|239905076|ref|YP_002951815.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
gi|239794940|dbj|BAH73929.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
Length = 394
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 130/246 (52%), Gaps = 6/246 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+DIT G +A ++ + E GL CS GVAP + +AK+ SD +KP
Sbjct: 98 ASIDEAYVDITGSQTLFGPPET-MARAMKADIREATGLPCSVGVAPVKFIAKIASDYDKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G ++ + + F+ LP+ KI G+GK E L + GI ++ + A
Sbjct: 157 DGLTIVTPE--TALDFLGPLPVSKIPGVGKRAEESLARL-GIRVVADIRRHEPEFLARHC 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
GS R KS+S+E TF T D+ +L L + AE + +++
Sbjct: 214 GKWGLDLYDKAHARGSAVVCTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELR 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+E LRGRT+T+KLK +F+ TR+ TL + +S I + A LL AE LP LRLIG+
Sbjct: 274 QESLRGRTVTIKLKFNTFKQITRSRTLAEPTASDSAIFETARALLDAEPLPHPLRLIGVG 333
Query: 241 VTQFNE 246
V+QF E
Sbjct: 334 VSQFGE 339
>gi|313205495|ref|YP_004044152.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
gi|312444811|gb|ADQ81167.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
Length = 361
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE ++ + +IA+E++ + E GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 100 SLDEAFLDVTENHKQIA-TATQIAKEIKQKIRETVGLTASAGVSFNKFLAKIASDYNKPD 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ A F+ +LPI + G+GKVT + + GI T ++ Q
Sbjct: 159 GLFVITPK--AAEQFVDTLPIERFFGVGKVTAERMHQL-GIKTGADLKQWSEQGLVTNFG 215
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD---- 179
+ + + R RKS+SSE TF++ D +Y ++ ++L+ +
Sbjct: 216 KVGHMYYQNARAIDNRPVESQRIRKSVSSETTFAIDTD---IYEEILPELDVLTREVVDY 272
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIG 238
+QK+ +GRT ++KLK + F V TR+ T +S E + +LK +L +RLIG
Sbjct: 273 IQKKDFKGRTASIKLKFSDFRVITRSKTFPTPVSDYETLYGAGKEMLKLVDLSPKIRLIG 332
Query: 239 LRVTQFNEDKV 249
+ V NE++V
Sbjct: 333 IGVKN-NEEEV 342
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 16/234 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R EIA E+R + LT SAGV+ N+ LAK+ SD NKP+
Sbjct: 107 SLDEAYLDVTASGR----PATEIAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPD 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G V+ P++ A F++ LP+++ G+G VT + + FGI T ++ K L F
Sbjct: 163 GLCVIRPHEGAA---FVAGLPVKRFHGVGPVTAAKM-ERFGIRTGADLAAKSREWLQGNF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSA 178
S AD++ G+ +R RKSI +ERTFS ED +A L L + E +
Sbjct: 219 GRS-ADYYYGAARGIDHRPVRASRVRKSIGAERTFS--EDFRTRADLLAALEPVIEAVWE 275
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 232
+ + G GRT+TLK+K A F+ TRA + + +S + LL+ ELPV
Sbjct: 276 RIDRAGAAGRTVTLKIKFADFQQITRARSFETPVSDRGMFTRIGHDLLERELPV 329
>gi|384214582|ref|YP_005605746.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354953479|dbj|BAL06158.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 366
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 137/251 (54%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTE-----NLQGIPLARDVALLIREKIKAETGLNASAGISYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLC 118
KPNGQFV+ D F+ +LP+ K GIG T + + G+ T ++ Q +
Sbjct: 168 RKPNGQFVISPDMGP--AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQTLEFMN 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLS 177
A F S A ++ + G+ R RKSI +E TFS D+ L +L + + +
Sbjct: 225 ANFGKSGA-YYYWISRGVDERPVRANRIRKSIGAETTFSTDLDEYGALAAELKPLVDKVW 283
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
+ G RGRT+TLK+K A FE+ TR+ ++ ++ +D+ + A LL+AE+P+ +R
Sbjct: 284 RHCETTGNRGRTVTLKIKFADFEIITRSRSVTAPVAGRDDLERLACGLLEAEMPLPKRVR 343
Query: 236 LIGLRVTQFNE 246
L+G+ ++ +
Sbjct: 344 LLGVSLSALQD 354
>gi|395003647|ref|ZP_10387772.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
gi|394318442|gb|EJE54873.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
Length = 422
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 11/245 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ S+++ GLTCS GVAPNRLLAK+ S+ NKPN
Sbjct: 150 GVDEVYIDFTDVPGGQREGGRVLARLIQKSIFDVTGLTCSIGVAPNRLLAKMASEFNKPN 209
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G ++ + + I L +RKI GIG K E + GI T E+ Q L A F
Sbjct: 210 GISIVHEEDLK--DRIWPLNVRKINGIGPKAGEKLA--ALGITTIGELAAQDPQWLIARF 265
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLS 177
S+ + V G + S+S E TF DKA L R ++ E ++
Sbjct: 266 GQSSGAWMHRVAWGRDDSPVVTESEPVSMSRETTFDRDLHAVRDKAELGRIFTDLCERVA 325
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
AD+Q++G G+T+ +KL+ F + TR TL +Y + I + A + LK L LRL
Sbjct: 326 ADLQRKGYVGKTIGIKLRYDDFRIATRDQTLDRYTQDAATIRRTAGLCLKRVPLDRKLRL 385
Query: 237 IGLRV 241
+G+RV
Sbjct: 386 LGVRV 390
>gi|78358660|ref|YP_390109.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
gi|78221065|gb|ABB40414.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
Length = 385
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 133/247 (53%), Gaps = 8/247 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAYLD T R G E+A +R +V E LTCS GVAP + LAK+ SD+NKP
Sbjct: 94 ASVDEAYLDATGSARLFGPPE-EMARRIRAAVREAVSLTCSVGVAPVKFLAKIASDVNKP 152
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
+G FVL D +A F++ LP+ I G+G+ L+ G+ T ++L+ + F
Sbjct: 153 DGLFVLQPDEVA--GFLAVLPVGDIPGVGRHFAGQLQ-ALGVRTAGDVLRYPETFWQRRF 209
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
F + G+ KS S+E TF T+D+ LL L + AE + +
Sbjct: 210 GKGGLGLF-ARAQGIDPRVVEPYTQAKSESAENTFEEDTDDRELLKTWLLKQAERVGRNQ 268
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 239
++ GL GRT+TLK+K A F TR+ TL SS+ I A+ LL + LP +RLIG+
Sbjct: 269 RRMGLSGRTVTLKVKFADFRTVTRSRTLAAPTSSTRVIYDTAAALLDEMGLPQKVRLIGV 328
Query: 240 RVTQFNE 246
++ + E
Sbjct: 329 GLSHYAE 335
>gi|293610008|ref|ZP_06692309.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827240|gb|EFF85604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 351
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMQIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF A +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 7/239 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+
Sbjct: 111 SLDEAFLDVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPH 169
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+P +R + F++ LP+ K+ G+G T L G+ T ++
Sbjct: 170 GLFVIPPERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG 226
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ +F V + +R RKS+ +ERTFS D++++ L E+A ++A +Q
Sbjct: 227 KSGGWFYDVARAIDERPVQPSRQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQV 286
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 239
L G T+ +K + F TRA T + I S++ I LL +P S+RL+G+
Sbjct: 287 LHLAGHTVHIKARFPDFTTVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGM 345
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFALYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALFQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|182418367|ref|ZP_02949662.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237666322|ref|ZP_04526307.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182377749|gb|EDT75293.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237657521|gb|EEP55076.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 348
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 137/255 (53%), Gaps = 20/255 (7%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE YLD+++ R +GI+ A ++ V++E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEGYLDLSQ---SRFENGIDAARYIKNKVFKEIGLTISVGISYNKFLAKLASDWNKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRD--VFGINTCEEMLQKGSLLCAV 120
NG + R + + LP+ KI G+GK++ L + +F I M +K
Sbjct: 157 NG--IKEISRSMIPDILLPLPLSKIHGLGKISVGKLNNMGIFYIKDLYNMEKK--FYIEY 212
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLA----EIAEM 175
+ D + + G+ + R RKS+ ERT T++K L + L EI EM
Sbjct: 213 LGKNGLDIYDRIR-GIDNRKIETIRERKSVGKERTLKFDTDNKEELLQYLKEFSFEIEEM 271
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSL 234
L A + + G+T+TLK KT FE TR+ TL YIS EDI + LL++ EL +L
Sbjct: 272 LCA----KNVVGKTVTLKFKTKDFENHTRSRTLNNYISYHEDIFNVSKELLESEELKSNL 327
Query: 235 RLIGLRVTQFNEDKV 249
RLIG+ ++ F E ++
Sbjct: 328 RLIGVSISSFKEKEI 342
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 125/247 (50%), Gaps = 10/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+++ ERG S IAE LR + GLT SAGV+ N++LAK+ SD+NKP+
Sbjct: 103 SLDEAYLDVSDSPHERG-SATRIAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVF 121
G V+P F +SLPI + GIGK T + GI T ++L+ SL A
Sbjct: 162 GLAVIPPAEGP--AFAASLPIERFHGIGKATAAHMH-ALGIKTGADLLRFSAESLRQAFG 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
H DF+ + G+ R RKSI SE TF E LY+ L + AD+
Sbjct: 219 KH--GDFYYHMARGIDLRPVEPTRERKSIGSETTFIHDLEGIPALYQALLAQNQDAFADV 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 239
QK L TLT+KLK F TR+ ++ + D + LL P +RL+G+
Sbjct: 277 QKRHLHPHTLTIKLKYHDFSQITRSRSVSTPFTRENDAHYWIARLLHDIAPTKPVRLVGV 336
Query: 240 RVTQFNE 246
+ E
Sbjct: 337 TYSGLQE 343
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 96/196 (48%), Gaps = 31/196 (15%)
Query: 2 AASLDEAYLDITEVCRE-----------------------------RGISGIEIAEELRT 32
A SLDEA LD+T+ E R + ELR
Sbjct: 177 AFSLDEACLDLTDYIAENWQKYISDAMDEIESKESDKEEWASTASGRAAIAAVVVRELRK 236
Query: 33 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 92
V++ LT SAG+A N +LAK+CSD+NKPNGQ+VLP R VMTFI LP+RKIGGIGK
Sbjct: 237 KVFDCTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGK 296
Query: 93 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 152
V E L + + T ++ + + +FS TA + L LG+ Q RKS S
Sbjct: 297 VMEKTLNEALDVQTGGDLFDQRGKIAHLFSGKTAMWLLQTSLGVQERREKQE--RKSFSR 354
Query: 153 ERTFSVTEDKALLYRK 168
ERTF D L K
Sbjct: 355 ERTFKRLSDPKQLEEK 370
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGITMTNL-EDKV 357
>gi|399887391|ref|ZP_10773268.1| DNA polymerase IV [Clostridium arbusti SL206]
Length = 347
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T V ++ + IA ++ + +E GL S G++ N+ LAK+ SD NKPN
Sbjct: 101 SIDEAYLDLTHVNKD----SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPN 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+ + + F L I K+ G+GK + L D+ GI T EE+ + + L +F
Sbjct: 157 GLKVIKKSDVPEILF--PLSIDKVHGLGKKSVKKLNDI-GIFTVEELYKLPVNFLIDLFG 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ + R RKSI E T + T+DK + + A ++ M+
Sbjct: 214 KFGPEIYDRIR-GIDNREVKILRERKSIGKETTLINDTDDKEDIKPYIKSFASSIANIME 272
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLR 240
+ L G+ +T+K+KT+SF T++ TL YI+S EDI K A S+L K +L +RLIGL
Sbjct: 273 SKNLSGKNITIKIKTSSFINHTKSKTLTHYINSEEDIYKEACSILEKLKLEEKIRLIGLS 332
Query: 241 VTQFNEDKV 249
++ F E ++
Sbjct: 333 ISSFKEKRI 341
>gi|427426239|ref|ZP_18916302.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
gi|425696945|gb|EKU66638.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
Length = 351
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF A +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVIMTNL-EDKV 357
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V ++ S ++A +R+ + +E LT SAGVAPN+ LAK+ SD +KP+
Sbjct: 104 SLDEAYLDVT-VNKQGLPSATDVARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPD 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ + V+ F+ LP+RK+ G+GKV + L + G++T ++ + ++ H
Sbjct: 163 GLFVIKPAQ--VLAFLQPLPVRKVPGVGKVMQARL-EALGVHTVGDLARHTAV---ELEH 216
Query: 124 STADFF-----LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178
+ LS G+ P A ++ IS+E TF+V + L L +A +
Sbjct: 217 HFGRYGIRLHELSQGIDRREVQ-PDAPLQQ-ISAETTFAVDQPLHALSEPLGRLAVKVWG 274
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LR 235
K+G GRT+ LKLKT F + TR +TL + +S+E + + A L + +LP R
Sbjct: 275 QAVKKGAVGRTVVLKLKTDRFRILTRTLTLTRAPTSAEALAEVAFQLCARVDLPAGTRYR 334
Query: 236 LIGLRVTQFNE 246
L G+ ++ F++
Sbjct: 335 LAGVGMSNFDD 345
>gi|187478526|ref|YP_786550.1| DNA polymerase IV [Bordetella avium 197N]
gi|115423112|emb|CAJ49643.1| DNA polymerase IV [Bordetella avium 197N]
Length = 360
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 23/261 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S +AE +R + E GLT SAGVAPN+ LAK+ SD NKP
Sbjct: 104 SLDEAYLDVT--VNKLGLPSATAVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G FVL + V+ F+ LP+RK+ G+G+VT+ L + GI+T ++ + A
Sbjct: 162 DGLFVLRPAK--VLEFLQPLPVRKVPGVGRVTQARL-ESLGIHTVGDL---ATCAPAELE 215
Query: 123 HSTADFFL---SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
H L + GL + + +S+E TF A L L +A +
Sbjct: 216 HHFGRHGLRLHELARGLDEREVQPDQPLQQVSAENTFERDLRLADLGEALDRLAARVWEQ 275
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPV--SLRL 236
+K+G GRT LKLKT F + TR++TL + SS+E++ A L + +LP RL
Sbjct: 276 ARKKGQLGRTAVLKLKTDRFRLLTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRL 335
Query: 237 IGLRVTQFNEDKVRAPSDPTQ 257
G+ ++ F +DP Q
Sbjct: 336 AGVGMSNF--------TDPAQ 348
>gi|87200669|ref|YP_497926.1| DNA polymerase IV [Novosphingobium aromaticivorans DSM 12444]
gi|87136350|gb|ABD27092.1| DNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
Length = 378
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 9/240 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ R G S IAE +R + + GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 116 SLDEAYLDVTDDVRGIG-SATRIAELIRRRIKADTGLTASAGVSYNKFLAKIASDQNKPD 174
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ A F++SLP+R+ GIG + GI T ++ +
Sbjct: 175 GMCVIRPGEGA--QFVASLPVRRFHGIGPRGAEKM-AALGIETGADLRARDLPFLRQHFG 231
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
S AD+ G+ R RKS+ +ERTF ++ A L L I E++ ++
Sbjct: 232 SLADYLYRAVRGIDLRQVKADRPRKSVGAERTFERDISSGPA-LRETLERILEIVWDRIE 290
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
+ G GRT+TLK+K F TRA +L + I+ E+ + + LL A+LP++ +RL+GL
Sbjct: 291 RSGASGRTVTLKMKFNDFTPITRARSLPRPIADKEEFARLSRELLDAQLPLAKPIRLMGL 350
>gi|375136727|ref|YP_004997377.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
gi|325124172|gb|ADY83695.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
Length = 351
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF A +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 16/266 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++GI S I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP
Sbjct: 95 SLDEAYLDVTE--DKQGIGSAIDIARQIKQEIQEELNLTVSAGVSVNKFVAKIASDINKP 152
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G F+ P+ V+ F+ LPI K G+GKVT ++ + GI +M Q
Sbjct: 153 DGLTFIGPSK---VVAFMEHLPIEKFFGVGKVTASKMKKL-GIYRGADMKQWTQEALTRH 208
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
T +FF ++ G+ + R KSIS E TF+ D +L L E++ L +
Sbjct: 209 FGKTGEFFYNIVRGIDNRPVQPNRQTKSISVEDTFAQDIADIQVLEDILKELSVRLVKRL 268
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIG 238
+ L G+T+TLK+K + F TR++T ++ E + + AS LL K L + +RL+G
Sbjct: 269 NAKELAGKTVTLKVKFSDFSQATRSMTALDVVTGEEVLYQIASELLNKVSLTEMKVRLLG 328
Query: 239 LRVTQF-NEDKVRAPSDPTQKTLTNF 263
+ V+ F ED P + LT F
Sbjct: 329 VGVSNFTGED----PDRQINRQLTLF 350
>gi|398382571|ref|ZP_10540656.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
gi|397726677|gb|EJK87110.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
Length = 364
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 143/246 (58%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 107 SLDEAYLDVTQ--NKPGIASATLVAQEIRRLIREETGLTASAGVSYNKLIAKLASDQNKP 164
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
+G V+ P + A F++ +P+R+I GIG VT + + GI T ++ + S L A
Sbjct: 165 DGLCVVRPAEGAA---FMAGMPVRRIHGIGPVTAERMHKL-GIQTGADLRDRDLSFLQAQ 220
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLS 177
F S+A F+ G + + RKS+S E TF VTE+ L +++ IA+ L
Sbjct: 221 FG-SSALFYYRAARGEDDRPVHERQERKSVSVEDTFLEDLVTEEA--LVQEINRIADNLW 277
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--R 235
+ K GRT+ LK+K A F + TR+ + + S E +++ LL+A+LP+ + R
Sbjct: 278 NRIDKAQAYGRTVVLKVKFADFRIITRSRSFTAPVRSLEQLMETGRGLLRAQLPLRIGAR 337
Query: 236 LIGLRV 241
L+GL V
Sbjct: 338 LLGLGV 343
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISG-IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI+ ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP
Sbjct: 120 SLDEAYLDVTE--NKLGIAAATQVAQMIRQEIRAKTQLTASAGVSYNKFLAKLASDQNKP 177
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V+ P + A F+ +LPIR+ G+G E + + GI T ++ K A
Sbjct: 178 DGMCVIRPGEGAA---FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDRAWLAQH 233
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADM 180
S ++ G+ R RKSI ERTFS +A R L EI E++ +
Sbjct: 234 FGSFGEYLYRAARGIDERPVRVNRIRKSIGGERTFSADRHEAEELRTTLDEIVEIVWERI 293
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
++ RGRT+TLKLK F++ TRA +L + + + +L++ LP+ +RL+G
Sbjct: 294 ERAQARGRTVTLKLKYNDFQLMTRARSLPRNVDGKVEFAALGHEILESLLPLPKPIRLMG 353
Query: 239 LRVTQFNED 247
L ++ D
Sbjct: 354 LTLSNLERD 362
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|238021390|ref|ZP_04601816.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
gi|237868370|gb|EEP69376.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
Length = 360
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 139/258 (53%), Gaps = 16/258 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
+LDEAYLD+T C ++ I+ +IA +R ++ + GLT SAG+APN+ LAK+ SD KP
Sbjct: 103 ALDEAYLDVT--CNKQNIAYARDIALAIRAEIHRQTGLTASAGIAPNKFLAKIASDWRKP 160
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQFV+ P + V F+ +LP+ KI G+GK T L + G T + LQ+ L +
Sbjct: 161 NGQFVIAPQN---VNAFLHTLPLGKISGVGKKTLAKL-NAQGWRTVGD-LQRVPLGMLIN 215
Query: 122 SHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
+ L L G N P R R IS+E T + R + ++A L+
Sbjct: 216 LFGRWGYRLH-DLAHGVDNRPVEPERERVQISTEITLPDDLPLGQIVRHIPDLARDLAQQ 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 237
MQ+ G+TLTLKLKT+ F TR+ T + S++ +++ A L K +P RLI
Sbjct: 275 MQRRHTIGQTLTLKLKTSDFRTLTRSQTYSSALPSAQTLIQAAQQLAK-RMPSEHEYRLI 333
Query: 238 GLRVTQFNEDKVRAPSDP 255
G+ ++ +D+ R P P
Sbjct: 334 GIGISHL-QDENRQPELP 350
>gi|189912993|ref|YP_001964882.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|189913320|ref|YP_001964549.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|167777669|gb|ABZ95969.1| DNA damage-inducible protein DNA polymerase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167781388|gb|ABZ99685.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 358
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 139/257 (54%), Gaps = 15/257 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ IA+E+R ++E GLTCSAGVA N+ LAK+ S+ NKPN
Sbjct: 101 SLDEAYLDVTTNKPNLPLAST-IAKEIRKKIWEGTGLTCSAGVATNKFLAKMASEKNKPN 159
Query: 64 GQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G + VLP + ++F+ LP+ + GIGK T + + G + +++ L S L F
Sbjct: 160 GLYVVLPGEE---LSFLDELPLYQFFGIGKKTYEKFQHL-GFSKGKDLRLADESFLLKEF 215
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ F+ + G+ R KSI E TF+ +ED + L +A+ L M
Sbjct: 216 GKMGSVFY-RMARGIDDREVIPFRDPKSIGVETTFTHDSEDFSYFLLTLETLAKELEGRM 274
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL------KAELPVSL 234
K+ +G+TLTLK+K F V+ +++T ++++ + +S LL + P +
Sbjct: 275 LKKNKKGKTLTLKVKFEDFTVKQKSITSDSVFFLADNLFQQSSNLLANVWKDNFDPPKKI 334
Query: 235 RLIGLRVTQFNEDKVRA 251
RL+GL VT F E +++
Sbjct: 335 RLLGLSVTNFYEKEIKG 351
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 134/245 (54%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++IA+ ++ + E+ GLTCSAGV+ N+ LAK+ SD+NKP+
Sbjct: 101 SLDEAYLDVTE-NKLGEDDAVKIAKLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPD 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +P ++ + + F +LPI K GIGKVT L+ GIN ++ +
Sbjct: 160 GLTYIPPEKASEILF--ALPIEKFYGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQK 182
F+ V G+ KS+S E TF D L L ++AE LS +++
Sbjct: 217 KAGHFYYYVVRGIDKREVITEFEPKSLSCETTFYEDIDNLDYLLIILQQLAERLSNRLRQ 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLR 240
+G+RG +TLK+K +FE+ TR+ YI+ ++++ + LL A S +RL+GL
Sbjct: 277 KGIRGNNITLKIKYDNFELITRSSNTPSYINKADELFAYGEQLLIANWDSSRKVRLLGLA 336
Query: 241 VTQFN 245
+ + +
Sbjct: 337 IGKLD 341
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|148380777|ref|YP_001255318.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|153932271|ref|YP_001385062.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|153934711|ref|YP_001388531.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
gi|148290261|emb|CAL84381.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|152928315|gb|ABS33815.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|152930625|gb|ABS36124.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
Length = 349
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNTGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|170759086|ref|YP_001788136.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
gi|169406075|gb|ACA54486.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
Length = 349
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V +E GLT S G++ N+ LAK+ S+ NKP
Sbjct: 100 VSIDEAYLDITNIKEE----SIKVAEHIKKRVKDEMGLTLSVGISYNKFLAKLASEWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T DK + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITDKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVDDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|328957028|ref|YP_004374414.1| DNA polymerase IV [Carnobacterium sp. 17-4]
gi|328673352|gb|AEB29398.1| DNA polymerase IV [Carnobacterium sp. 17-4]
Length = 377
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V + S IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP
Sbjct: 119 SLDEAYLDVT-VNKHNLTSATYIAKLIQRDIWQEVQLTSSAGVSYNKFIAKLASDYHKPA 177
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+P D + F+ LPI K G+GK T + D+ I T E++ QK + L F
Sbjct: 178 GITVIPPDE--ALDFLRKLPIEKFYGVGKKTVEKMHDL-SIYTGEDLFQKNEMELIQRFG 234
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSAD 179
+ V G+ ++ +R RKS+ E T+ TE + L +L IA +
Sbjct: 235 RMGYSLYRKVR-GIDNSPVRVSRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLS 291
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLI 237
+QK G+T+ LK++ ++FE T+ +TL Y+ + E+I HA L L +RL+
Sbjct: 292 LQKNQKHGKTVVLKVRYSNFETATKRLTLPNYVKNGEEIFFHAQNLWDEIGVLDRGIRLL 351
Query: 238 GLRVTQFN 245
G+ VT +
Sbjct: 352 GITVTNLD 359
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 7/239 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+
Sbjct: 128 SLDEAFLDVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPH 186
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+P +R + F++ LP+ K+ G+G T L G+ T ++
Sbjct: 187 GLFVIPPERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG 243
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 182
+ +F V + +R RKS+ +ERTFS D++++ L E+A ++A +Q
Sbjct: 244 KSGGWFYDVARAIDERPVQPSRQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQV 303
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 239
L G T+ +K + F TRA T + I S++ I LL +P S+RL+G+
Sbjct: 304 LHLAGHTVHIKARFPDFTTVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGI 362
>gi|421096936|ref|ZP_15557635.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
gi|410800181|gb|EKS02242.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
Length = 362
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 9/226 (3%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+R +++ GLT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVTIAKEIRAEIFKRTGLTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+TFI LP+ G+GKVT ++++ GI+T +++ K +
Sbjct: 161 NGLVVVLPDD---VITFIDPLPVSSFHGVGKVTAQKMKEL-GIHTGKDLRTKNIDELVQY 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 217 FGKTGIYYYKISRGEDEREVESCRERKSLGAENTFDQDKIDQEDLLQQLREVAVEVERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
+K G+TLTLK+K F ++TR+ TL + I S++++ A+ L
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFSADELYSIAAELF 322
>gi|398018133|ref|XP_003862253.1| DNA polymerase kappa, putative [Leishmania donovani]
gi|322500482|emb|CBZ35559.1| DNA polymerase kappa, putative [Leishmania donovani]
Length = 598
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 14/275 (5%)
Query: 1 MAASLDEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
++ LDE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++
Sbjct: 235 VSVGLDELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNV 294
Query: 60 NKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
NKPNGQ + R V+ ++ +P+RKI GIG E L I+TC +L+ LL
Sbjct: 295 NKPNGQHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLA 353
Query: 119 AVFSHSTADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIA 173
+F T +LSVGLGL T + + + R+S+ E +FS E L+RKL E
Sbjct: 354 YLFREKTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQC 413
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--P 231
+ ++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L
Sbjct: 414 HVRCV---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHY 470
Query: 232 VSLRLIGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 265
RLIG+R+ +F + D A + T+ LT +T
Sbjct: 471 AEFRLIGVRLQRFTDTDDDHAGLNSTRDALTGALT 505
>gi|408380616|ref|ZP_11178199.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
gi|407745470|gb|EKF57003.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
Length = 364
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ I+ EIA ++R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 107 SLDEAYLDVTENLKDMPIA-TEIALQIRARIKAVTGLNASAGISYNKFLAKMASDLNKPN 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ V+ TF+ L ++K G+G T +R + GI T ++ K +
Sbjct: 166 GQAVITPRHGP--TFVEELAVKKFHGVGPATAEKMRRL-GIETGADLKAKSLTFLSQHFG 222
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR---KLAEIAEMLSADM 180
FF + G+ R RKSI +E TF+ D + L +L +A+ + +
Sbjct: 223 KAGPFFYGIARGIDERPVRPDRERKSIGAEDTFAA--DISALQAASDELRPLAQKVWSSC 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ +GL G+TLTLK+K A F TR+ T + ED+L+ A VLL P +RL+G
Sbjct: 281 RAKGLSGKTLTLKVKYADFTQVTRSRTTSVPFAGVEDMLELAHVLLVGLHPFKRPVRLLG 340
Query: 239 LRVTQFNEDK 248
L ++ DK
Sbjct: 341 LTLSSLVIDK 350
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGIELATDIARTIREQIREETQLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VEAFLTPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 215 EAFGSFGRSLYNRARGVDERPVEADQQVQSISSEDTFA--EDLLLEDLSEAIVQLAEKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T + S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERVGHTVVLKLKTAQFRILTRSFTPDRPPDSMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>gi|402823561|ref|ZP_10872979.1| DNA polymerase IV [Sphingomonas sp. LH128]
gi|402262917|gb|EJU12862.1| DNA polymerase IV [Sphingomonas sp. LH128]
Length = 375
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 132/248 (53%), Gaps = 11/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + G S IA+E+R + + LT SAGV+ N+ LAK+ SD NKP+
Sbjct: 118 SLDEAYLDVTADLKGIG-SATRIAQEIRRRIKADTRLTASAGVSYNKFLAKLASDQNKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G V+ A F++ LP+R+ G+G + E + R GI T ++ K + L A F
Sbjct: 177 GLCVIRPGEGA--QFVAGLPVRRFHGVGPRGAEKMAR--LGIETGADLAGKDLAFLRANF 232
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
S A++ G+ R RKS+ ERTF ED L + I + + +
Sbjct: 233 G-SFAEYLFRAARGVDLRQVRADRPRKSVGGERTFFENIEDPVALRETMDHIVDTVWERI 291
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
++ G RGRT+T+KL+ A F+ TRA +L +++ + LL+ LP+ +RL+G
Sbjct: 292 ERSGARGRTVTMKLRYADFQTLTRARSLHHFVADKAEFSAIGHALLEDHLPLPQPIRLMG 351
Query: 239 LRVTQFNE 246
L ++ +
Sbjct: 352 LTLSALEQ 359
>gi|170755759|ref|YP_001782423.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|429244890|ref|ZP_19208309.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
gi|169120971|gb|ACA44807.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|428758080|gb|EKX80533.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
Length = 349
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 IA---EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I+ + ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNVKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|433608670|ref|YP_007041039.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
gi|407886523|emb|CCH34166.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
Length = 427
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 6/246 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++ R + IAE +R V G+TCS GVAP + LAK+ S + KP+
Sbjct: 128 SLDEAFLDVSGALRRLRATPGAIAETIRDQVERAEGVTCSVGVAPTKFLAKLASGMCKPD 187
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+P + AV+ F+ LP+ + G+GK T L D G+ T ++ L V
Sbjct: 188 GMMVVP--KAAVLEFLHPLPVSALWGVGKRTAEQL-DRVGLETVADVAATPLPRLRRVLG 244
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
+ A+ ++ GL + KSI +E TF V D+ LL R+L ++E + ++
Sbjct: 245 VALAEHLHALAQGLDDRPVVPSSREKSIGAEETFEVDHFDRELLRRELLRLSERSAGTLR 304
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
+ GLRGRT+++K++ A F TR+ TL+ ++++ K A+ LL ++P ++RLIG+R
Sbjct: 305 ERGLRGRTVSIKVRFADFTTITRSKTLRVATDVTQEVYKTAATLLDEQVPPGAVRLIGVR 364
Query: 241 VTQFNE 246
+ Q E
Sbjct: 365 IEQLVE 370
>gi|374623299|ref|ZP_09695812.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
gi|373942413|gb|EHQ52958.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
Length = 383
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 13/257 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D+T V G SG + + L+ +V + GLTCS G+APN+LLAK+CS+++KP+
Sbjct: 125 GIDEIYIDLTHVP---GASG-PLGQRLKQAVRDATGLTCSIGIAPNKLLAKLCSELDKPD 180
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G +L D V T I LP+ K+ GIG L + GI T ++ G LL F
Sbjct: 181 GLTLLTTD--DVPTRIWPLPVGKVNGIGPKAAARL-EALGILTVGDLAACGPGLLREQFG 237
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
+ + G+ +S+S E TF +D+A L + +S
Sbjct: 238 PTYGAWLHQAARGIDDRPVETVSVPRSVSRETTFERDLHPRQDRAELSEIFTALCMRVSQ 297
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLI 237
D+ ++G RGRT+ +KL+ F TR +TL + +S++ DI + A L + L LRL+
Sbjct: 298 DLARKGCRGRTVGIKLRYEDFRTLTRDITLARPVSAAMDIRRAAGECLRRVPLEQRLRLL 357
Query: 238 GLRVTQFNEDKVRAPSD 254
G+RV+ + AP+D
Sbjct: 358 GVRVSGLSFGDEDAPAD 374
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 IA---EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I+ + ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNVKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 136/256 (53%), Gaps = 19/256 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G +IA +R + E GLT SAG+APN+ LAK+ SD +KP+
Sbjct: 102 SLDEAYLDVTRNKQNHPYAG-DIARLIRADILAETGLTASAGIAPNKFLAKIASDWHKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCA 119
GQF LP + + F+++LP+ KI G+GKVT + + G+ T ++ +++G L L
Sbjct: 161 GQFSLPPQK--IEAFLAALPLGKIPGVGKVTLQKMHRL-GLKTAGDLRRMERGELANLFG 217
Query: 120 VFSHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
+ + D L G N P R R IS+E T AL+ + L +A L
Sbjct: 218 KWGYRLYD------LARGIDNRPVKAERERVQISTEITLPEDLPLALILQHLPHLAADLW 271
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---L 234
A ++ R R++TLKLKTA F TR++T + + +L A L P +
Sbjct: 272 AQAARKQCRARSVTLKLKTARFRTLTRSLTYSSPLPDTTALLAAARELAARIPPDTEGGY 331
Query: 235 RLIGLRVTQFNEDKVR 250
RLIGL V+ + ++
Sbjct: 332 RLIGLGVSHLEQPGIQ 347
>gi|387819084|ref|YP_005679431.1| DNA polymerase IV [Clostridium botulinum H04402 065]
gi|322807128|emb|CBZ04702.1| DNA polymerase IV [Clostridium botulinum H04402 065]
Length = 349
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|226950227|ref|YP_002805318.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
gi|226843691|gb|ACO86357.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
Length = 349
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|117926811|ref|YP_867428.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
gi|117610567|gb|ABK46022.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
Length = 357
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE S +IA++++T+++EE LT SAG++ N++LAK+ S +NKPN
Sbjct: 102 SLDEAYLDVTENFLNLN-SATQIAQQIKTAIWEETHLTASAGISVNKMLAKIASAMNKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFS 122
G ++ ++ A FI +LP+++ GIG+ T E +L+ GI T + Q + +
Sbjct: 161 GLTLIRPEQAA--QFIDTLPVKRFHGIGQRTAERMLQ--LGIETGAHLRQWDRITLIKWF 216
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSAD 179
F+ + + + R RKS+ +E TF +D K L+ + L I L
Sbjct: 217 GKAGGFYHELAHNIDNRPVNPNRERKSVGAEHTFD--QDIFAKPLMQQALNTILAELWNR 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ + LRG TLTLK+K A F+ TRA T Q+ IS+ + + + LL+ E P+ +RL
Sbjct: 275 LDQLQLRGSTLTLKIKFADFQQITRAHTAQQIISTQAEAARIITALLQRE-PLYDRGVRL 333
Query: 237 IGLRVTQFNEDKVRAPSDPTQKTL 260
+G+ + + A + P Q +L
Sbjct: 334 LGISMGHLCSSQT-ATTQPQQLSL 356
>gi|313888564|ref|ZP_07822230.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845450|gb|EFR32845.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 346
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 136/253 (53%), Gaps = 11/253 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE+YLDI+ + + +I +L+ V+E+ GL+ S G++ N+ LAK+ SD NKP
Sbjct: 99 VSIDESYLDISGLGYDE-----DIVYDLQKKVFEKTGLSVSCGLSYNKFLAKLASDWNKP 153
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
G ++ + + F L IRK+ GIG TE LR++ GINT E++ L +F
Sbjct: 154 RGVKIIRESDIPEILF--PLDIRKVHGIGNKTEKRLRNI-GINTVEDLYSLSYDFLVTMF 210
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
S + + + G+ + RKS+ +E TF VT + L L + ++ +S D+
Sbjct: 211 KKSGEEIYKRIR-GIDNREVTPNNVRKSLGTESTFEVTSKREKLISHLRDFSKEVSEDLI 269
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL-KHASVLLKAELPVSLRLIGLR 240
+ + G TLTLK+K +F+V+TR+ T + I EDI K + +A LRLIG+
Sbjct: 270 VKEISGYTLTLKMKDENFKVKTRSRTYENAIYEEEDIFNKSMEIFEEAYEGDKLRLIGIT 329
Query: 241 VTQFNEDKVRAPS 253
V+ + +R S
Sbjct: 330 VSNLVDLNIRQLS 342
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIATCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++A
Sbjct: 215 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R G + A+E+R + E GLT SAG++ N+ LAK+ SD KPN
Sbjct: 105 SLDEAYLDVTEDRRRLG-TAWATAKEIRARILAETGLTASAGISYNKFLAKLASDHRKPN 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQF + + A ++ +LP+ + G+G VT +R + GI T ++ K A
Sbjct: 164 GQFAVTPEMGAA--WVETLPVSRFHGVGPVTAAKMRRL-GIETGADLRAKSMDFLARHFG 220
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQ 181
S A+++ + G+ R RKS SE TFS +T+D + L + ++ +
Sbjct: 221 SNAEWYHQIVRGVDERPVNPNRERKSSGSETTFSRDLTDDAEIEAAVLGQADDVWEWCER 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+G GRT T+K+K A F++ TR+ + ++S E + + LL+ LP +RL+G+
Sbjct: 281 TQGF-GRTATVKIKYADFQIITRSRSQPAPMTSREQLHAASLALLRLVLPTPKGIRLVGV 339
Query: 240 RVTQF 244
V+ F
Sbjct: 340 TVSNF 344
>gi|168184461|ref|ZP_02619125.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|237796253|ref|YP_002863805.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
gi|182672433|gb|EDT84394.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|229262753|gb|ACQ53786.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
Length = 349
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQD--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|167645987|ref|YP_001683650.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167348417|gb|ABZ71152.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 373
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T RG++ + A E+R + E GLT SAG++ N+ LAK+ SD KP
Sbjct: 103 SLDEAYLDVT--ANRRGLATATDTALEIRARILETTGLTASAGISYNKFLAKLASDQRKP 160
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQFV+P + F+ +LPI + G+G VTE ++ + I+T E++ ++
Sbjct: 161 NGQFVVPPGKGEA--FVQTLPIGRFYGVGAVTEAKMKSL-DIHTGEDLHRQSLAFLQQHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD--- 179
+ ++ ++ G R RKS SE TF D+ + + E + AD
Sbjct: 218 GKSGPWYYAIARGEDHRRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVW 273
Query: 180 --MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLR 235
QK G R RT+T+K+K A F+ TR+ +L I+ E + + L+++ P + +R
Sbjct: 274 AWCQKTGARARTVTVKIKWADFQQATRSRSLPSPIADHETLRRTGLDLIRSVYPPRMGIR 333
Query: 236 LIGLRVTQFNE 246
L+G+ ++ F++
Sbjct: 334 LVGVTLSNFDQ 344
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 25/267 (9%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++G+ ++IA E++ + + LT SAGV+ N+LLAK+ SD+ KP
Sbjct: 100 SLDEAFLDVTE--NKKGMELAVDIAREIKQKILDRTSLTASAGVSYNKLLAKISSDMRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G F + DR + FI SLP+ K+ GIG T + D+ G+ T ++ Q L VF
Sbjct: 158 DGLFTVHPDR--ALGFIGSLPVEKLWGIGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVF 214
Query: 122 ---SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIA 173
H DF G+ + RKS+ ERTF E K + LY + E+
Sbjct: 215 GKMGHVYYDF----SRGIDNRRVVAFHERKSVGCERTFLEDIHVESKIIIELYHIVLELV 270
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELP 231
E L+ + G GRTLTLKLK + TR++T ++ + + +DIL A LL A
Sbjct: 271 ERLA----RSGFEGRTLTLKLKWDAASQITRSLTQERVLRTKDDILPLAKRLLGETAYHD 326
Query: 232 VSLRLIGLRVTQFNEDKVRAPSDPTQK 258
+RL+GL V+ +K AP P +
Sbjct: 327 RPVRLMGLSVSSPVIEKADAPGRPVWR 353
>gi|333378665|ref|ZP_08470395.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
gi|332883069|gb|EGK03353.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
Length = 353
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 20/247 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKPN
Sbjct: 92 SLDEAFLDVTENNMNIA-SATQIAQEIKQKIREATNLTASAGVSFNKFLAKIASDQNKPN 150
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G FV+ F+ SL I + G+GKVT ++ + GI T ++ Q+ + L +VF
Sbjct: 151 GLFVVKPK--VAEQFVESLAIERFFGVGKVTAKVMHQM-GIKTGWDLKQRSENELVSVFG 207
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA---- 178
+ ++ + + R RKSISSE TF D L E+A L A
Sbjct: 208 KAGHIYYQN-ARAIDYRPVESQRIRKSISSETTFDRDID------SLDELAVELDAVARD 260
Query: 179 ---DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSL 234
+QK+ +GRT+TLK+K A F++ TR+ T + E K LLK +L +
Sbjct: 261 TFDYLQKKKFKGRTVTLKIKYADFKIITRSRTFADAVEDYELFYKAGFELLKLVDLSPKV 320
Query: 235 RLIGLRV 241
RLIGL V
Sbjct: 321 RLIGLGV 327
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + R + IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 107 SLDEAYLDLTDYLQGR--TATRIAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPD 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFS 122
G FV+P + A F+ LPI + GIG T + + GI T ++ Q L A F
Sbjct: 165 GLFVIPPE--AGPEFVHGLPIGRFHGIGPATAARM-ESHGILTGADLARQTLEFLTARFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQ 181
S ++ ++ G+ + R RKSI +E T F D + L +A+ +
Sbjct: 222 KS-GTYYWNIARGIDTREVKPNRIRKSIGAENTYFEDLRDLPAAHEALEVLADKVWRHAT 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGL 239
G GRT+TLK+K F TRA +L + + S +++L A LL P +RL+G+
Sbjct: 281 NAGRVGRTVTLKVKYGDFRQITRARSLPRPVESRDEMLGMARDLLGPVFADPHGVRLLGI 340
Query: 240 RVTQFNEDK 248
++ +E +
Sbjct: 341 TLSGLDEAR 349
>gi|424744843|ref|ZP_18173126.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
gi|422942623|gb|EKU37670.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
Length = 351
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQTLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|325860095|ref|ZP_08173221.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
gi|325482380|gb|EGC85387.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
Length = 359
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 144/270 (53%), Gaps = 27/270 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP
Sbjct: 100 SLDEAFLDVTE--NKKGMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G F + DR + F+ SLP+ K+ G+G T + D+ G+ T E++ Q L VF
Sbjct: 158 DGLFTVHPDR--ALGFVGSLPVEKLWGVGPKTAKRMHDM-GVFTGEQLRQVSRRHLVQVF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAE 174
+ + G+ + RKS+ ERTF ED + LY + E+ E
Sbjct: 215 G-KMGNIYYDFSRGIDNRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVE 271
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AEL 230
L+ + G GRTLTLKLK + TR++T Q+ + + +DIL A LLK +
Sbjct: 272 RLA----RSGFEGRTLTLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDR 327
Query: 231 PVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 260
PV RL+GL V+ +K + P + L
Sbjct: 328 PV--RLMGLSVSSPLPEKEESSHVPVEGLL 355
>gi|260583597|ref|ZP_05851345.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
gi|260158223|gb|EEW93291.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
Length = 352
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+TE + + + I IA E++ ++Y+E GLTCS GV+ N+ LAK+ S KP
Sbjct: 101 SIDEAYLDVTENSKNQTSATI-IAREIQEAIYKEVGLTCSVGVSFNKFLAKIASGQRKPA 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTE---HILRDVFG---INTCEEMLQKGSLL 117
G V+ D+ + FI +LP+ K G+G+ T H + + G +N +E L K
Sbjct: 160 GITVI--DQESFPEFIKTLPVEKFFGVGQATTKKLHQKKLLIGEDILNCSKEYLIK---- 213
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEML 176
F + V G + R RKS E T T D+ +L + + + +E +
Sbjct: 214 --YFGKQGEALYRQVR-GQSNDQLTLYRERKSYGKEETLLEDTTDEDVLQKYIEQFSEQI 270
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLR 235
S ++K L +T+T+KLK + FE +TR+ TL+ Y+ S E + A LL + S+R
Sbjct: 271 SKWLKKNKLAAKTITIKLKQSDFETKTRSKTLETYVQSKEKLEIEAYHLLMEQYNNESVR 330
Query: 236 LIGLRVTQFNE 246
LIGL V+QF +
Sbjct: 331 LIGLTVSQFEQ 341
>gi|223934355|ref|ZP_03626276.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223896818|gb|EEF63258.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 368
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 12/237 (5%)
Query: 4 SLDEAYLDITEVCRERGI-----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 58
S+DEAYLD++ VC+ + S + +A +L+ ++ E GLT S G+A N+LLAK+ SD
Sbjct: 102 SIDEAYLDLSPVCQRSDLDSSLLSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASD 161
Query: 59 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLL 117
NKPNG ++P +R V+ F+ +PIR I G+G+VTE +L+ G+ T ++ G L
Sbjct: 162 FNKPNGLTLIP-ERDKVL-FLRPMPIRAIPGVGRVTEEMLKKS-GVETIGDLQDFPGDLR 218
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEML 176
V S S G +T KSISSE TF TED+ +L L E AE +
Sbjct: 219 SMVGSFGPTLKRFSFGEDNRQLDT--GDVIKSISSENTFLKDTEDRKILKTCLREQAEEI 276
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 233
+A ++++ + +T+ +KL+ + F TR +++++ I+ + DI + LL E VS
Sbjct: 277 AAKLKRKQIGAQTIQVKLRYSDFTTLTRQLSVEEPITEAADIYRLGCYLLAREKLVS 333
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 143/259 (55%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 172 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 224
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKSI ERT+ + LLYR +
Sbjct: 225 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKE 275
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 276 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEE 335
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 336 IGKIEKGIRLLGVTVTNFQ 354
>gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85722697|gb|ABC77640.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 362
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 139/248 (56%), Gaps = 11/248 (4%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 64
+DEAYLDI+E R+ + +I+E+++T +YE+ GLTCS G+APN+LLAK+ SD+NKP+G
Sbjct: 116 IDEAYLDISE-NRD---TDEKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDG 171
Query: 65 QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSH 123
+ + + + LPIRK+ GIG TE L+ I T ++ +L A F
Sbjct: 172 LTIFSGED--IENRLWPLPIRKLYGIGPKTEEHLK-ALNIATIGQLAALPPEVLVARFGP 228
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQK 182
S + G+ + + KS S E TF V E + + R LAE+ + + +D+ +
Sbjct: 229 SYGHYLHEASRGIDESPIITSWEPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAE 288
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLR 240
+G R + LK++ + F TRA ++ + + E+I + A S L + +L +RL+G+R
Sbjct: 289 KGYAARNVILKIRYSDFRTVTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVR 348
Query: 241 VTQFNEDK 248
V + + K
Sbjct: 349 VGRLEKIK 356
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++A
Sbjct: 215 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>gi|424877132|ref|ZP_18300791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164735|gb|EJC64788.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 12/255 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 121 SLDEAYLDVTENLKGMEVA-TEIALEIRAKIKEVTGLNASAGISYNKFLAKMASDLNKPN 179
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQ V+ P + F+ +LP++K G+G T ++ GI T ++ K + L F
Sbjct: 180 GQAVITPKNGPG---FVEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQNF 235
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
S +F + G+ R RKS+ +E TF +D L +L +AE +
Sbjct: 236 GKS-GPYFYGIARGVDERRVRPDRIRKSVGAEDTFVEDIDDLDLAKAELRPLAEKVWRYC 294
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ + G+T+T+K+K + F TR+ T+ +S + +L++A LL + P S+RL+G
Sbjct: 295 EAHDITGKTVTVKIKYSDFSQATRSRTMAGSVSDVDMVLENAETLLASVFPFKRSVRLLG 354
Query: 239 LRVTQFN-EDKVRAP 252
+ ++ N E+ +AP
Sbjct: 355 ITLSSLNTEESEQAP 369
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 10/207 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP
Sbjct: 104 SLDEAYLDVT--VNKLGLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V+ F+ LP+RK+ G+GKVT+ L + GI T ++ G +
Sbjct: 162 DGQFVIRPTR--VLEFLQPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHGVQELEHYF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
+ G+ + + +S+E TFS ED L + + +AE + +
Sbjct: 219 GRYGRRLYELARGIDEREVQTDQPLQQVSAETTFS--EDVRLEAIGEAIDRMAEKVWSQA 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVT 207
K+G GRT+ LKLKT F + TR+ T
Sbjct: 277 LKKGALGRTVVLKLKTDRFRILTRSQT 303
>gi|395764365|ref|ZP_10445034.1| DNA-damage-inducible protein p [Janthinobacterium lividum PAMC
25724]
Length = 372
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 135/264 (51%), Gaps = 17/264 (6%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 64
+DE Y+D++E G +A L+ +V+E GL+CS G+APN+LLAK+CSD+ KP+G
Sbjct: 114 IDEIYIDLSEY----GEQAPAMAARLKAAVFEATGLSCSVGLAPNKLLAKICSDLEKPDG 169
Query: 65 QFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
+L P D V T + LP +KI GIG K T + + GI + E+ + ++L F
Sbjct: 170 LTILQPED---VETRVWPLPAKKINGIGPKATAKL--EALGIVSIGELARADLTMLRTQF 224
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLS 177
+ LG+ +R KS+S E TF V D+A L KL + ++
Sbjct: 225 GDLYTGWLRQAALGIDDRPVQTSRETKSVSRETTFERDLQVVRDRATLSEKLESLCTRVA 284
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRL 236
D+ K+ L GRT+ +KL+ F TR +TL + + IL+ + L + +RL
Sbjct: 285 GDLDKQSLAGRTVGVKLRFEDFSTVTRDITLPSATADAAAILRASRDCLRRVPFEKKIRL 344
Query: 237 IGLRVTQFNEDKVRAPSDPTQKTL 260
+G+R++ + V P Q L
Sbjct: 345 LGVRISTLCDPAVVTRLVPAQAEL 368
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP
Sbjct: 104 SLDEAYLDVT--VNKLGLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQ+V+ R V+ F+ LP+RK+ G+GKV + L + GI+T ++ + +
Sbjct: 162 DGQYVIRPSR--VLEFLQPLPVRKVPGVGKVMQARL-EQLGIHTVGDLATHAAQELEHYF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
+ G+ + + +S+E TFS ED L + L +A+ + +
Sbjct: 219 GRYGRRLYELARGIDDREVQTDQPLQQVSAETTFS--EDVRLEAVGEALDRMADKVWSQA 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
K+G GRT+ LKLKT F + TR+ T +S+ ++ A +L + +LP RL
Sbjct: 277 LKKGALGRTVVLKLKTDRFRILTRSQTNPNPPASAAELATMARLLCERVDLPAQTLYRLA 336
Query: 238 GLRVTQFNEDK 248
G+ ++ F + +
Sbjct: 337 GVGMSNFADPQ 347
>gi|146092011|ref|XP_001470183.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
gi|134084977|emb|CAM69375.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
Length = 598
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 13/255 (5%)
Query: 1 MAASLDEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
++ LDE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++
Sbjct: 235 VSVGLDELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNV 294
Query: 60 NKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
NKPNGQ + R V+ ++ +P+RKI GIG E L I+TC +L+ LL
Sbjct: 295 NKPNGQHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLA 353
Query: 119 AVFSHSTADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIA 173
+F T +LSVGLGL T + + + R+S+ E +FS E L+RKL E
Sbjct: 354 YLFREKTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQC 413
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--P 231
+ ++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L
Sbjct: 414 HVRCV---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHY 470
Query: 232 VSLRLIGLRVTQFNE 246
RLIG+R+ +F +
Sbjct: 471 AEFRLIGVRLQRFTD 485
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 144/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++L+AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LPI G+GKVT ++ + GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTST 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|421656075|ref|ZP_16096386.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
gi|408506381|gb|EKK08092.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
Length = 351
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 136/248 (54%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H
Sbjct: 159 GLCVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVH 212
Query: 124 STADFFLSVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
+ + L G N P QA R R+ IS E TF A +AE + +
Sbjct: 213 HFGKYGQQLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLI 237
+K+ L R + +KLK +F+ + + + I S +D+++ +LL + +P RLI
Sbjct: 273 EKKQLNARGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLI 332
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 333 GIGVYQLQ 340
>gi|401424998|ref|XP_003876984.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493228|emb|CBZ28513.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 598
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 13/255 (5%)
Query: 1 MAASLDEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
++ LDE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++
Sbjct: 235 VSVGLDELTMDVTKYLQEFPAVSASDIAHDFRNEVFIKTQLTSSGGIGPTSILAKIASNV 294
Query: 60 NKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 118
NKPNGQ + R V+ ++ +P+RKI GIG E L I+TC +L+ LL
Sbjct: 295 NKPNGQHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLA 353
Query: 119 AVFSHSTADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIA 173
+F T +LSVGLGL T + + + R+S+ E +FS E L+RKL E
Sbjct: 354 YLFREKTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQC 413
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--P 231
+ ++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L
Sbjct: 414 HVRCV---RDHLQPRKMTLVLKYRTYDTEQFSVTLSSHTNDLKVWLEASQKLLEPHLLHY 470
Query: 232 VSLRLIGLRVTQFNE 246
RL+G+R+ +F +
Sbjct: 471 AEFRLVGVRLQRFTD 485
>gi|315639680|ref|ZP_07894820.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
gi|315484641|gb|EFU75097.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
Length = 374
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 138/250 (55%), Gaps = 17/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+TE + + S I++A+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 116 SIDEAYLDVTE-NKIQAKSAIKVAKCIQYDIWHELQLTCSAGVSYNKFLAKLASDYQKPR 174
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVF 121
G V+P D +A F+ LPI K G+GK T + ++ GI+T ++ +K L F
Sbjct: 175 GLTVVMPEDAVA---FLKKLPIEKFHGVGKKTVPKMHEL-GIHTGADLYEKDEFFLIQQF 230
Query: 122 SHSTADFFLSV-GLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLS 177
F V G+ L T R RKS+ ERT+ TE+ L +L +++E ++
Sbjct: 231 GKMGYSLFRKVRGIHLSPVVT--TRERKSVGKERTYGTLLTTEESCL--TQLRQLSEEVA 286
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
++K G + LK++TA F +T+ +TL + E+I ASVL + E V +R
Sbjct: 287 DLLKKLERHGNIVVLKMRTADFVTKTKRMTLNRATHRKEEIFSVASVLFEEENQVDRGIR 346
Query: 236 LIGLRVTQFN 245
L+G+ VT N
Sbjct: 347 LLGVTVTGLN 356
>gi|365899200|ref|ZP_09437117.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
gi|365420001|emb|CCE09659.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
Length = 367
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ +IA +R + E LT SAG++ N+ LAK+ SD KPN
Sbjct: 114 SLDEAYLDVTENLQHIPVA-TDIATAIRAKILRETCLTASAGISYNKFLAKLASDHRKPN 172
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFS 122
GQFV+ +M F+ LP+ K GIG T + + GI T +M Q + A F
Sbjct: 173 GQFVI-TPKMGP-AFVEELPVGKFHGIGPATNAKM-NRLGIFTGMDMRNQTLEFMNAHFG 229
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ A ++ + G+ R RKS+ +E TFS +TE AL+ +L + + +
Sbjct: 230 KAGA-YYYWISRGVDERPVRANRIRKSVGAENTFSGDLTEFAALV-AELDPLVDKIWGHC 287
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ G GRT+TLK+K + FE+ TR+ +L ISS +D+ + LL++E+P +RL+G
Sbjct: 288 ESTGNFGRTVTLKVKFSDFEIITRSRSLASAISSRQDLGRLTIGLLESEMPTPKPVRLLG 347
Query: 239 LRVTQFNED 247
+ ++ +
Sbjct: 348 VSLSSLQSE 356
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 13/245 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD++ ++ +++A++++ V + GLT S G++ N+ LAK+ SD NKP
Sbjct: 101 VSIDEAYLDLSN-----SLNSVDVAKQIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
+G V+ ND V + L I+K+ G+G+ ++ LR++ GINT E+M Q L +
Sbjct: 156 DGLKVISKND---VPDILLPLDIKKVHGLGRKSQEKLRNI-GINTVEDMFQLDLEFLEKI 211
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 180
F + + + G+ + R RKS+ ERTF T DK +L +L + + LS D+
Sbjct: 212 FGKMGYEIYQRIR-GIDNRAVNSQRSRKSLGVERTFPDTRDKYILLNRLIQYSVELSKDL 270
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGL 239
+ L +TLTLKLKT F++ T + T I+ ++I A L LRL+G+
Sbjct: 271 SSKNLGFKTLTLKLKTFDFKINTHSKTYSHVINDKQEIENLALELFNTHYKGEKLRLMGI 330
Query: 240 RVTQF 244
+
Sbjct: 331 SASNL 335
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 132/247 (53%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--NFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF A +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQSLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNVKLKLKNFQTLQHSKSFKRPIQSLHDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVT 207
+ ++ + +++TLKLKT F + TR +T
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLT 301
>gi|299771913|ref|YP_003733939.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
gi|298702001|gb|ADI92566.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
Length = 351
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G V+ ++A +FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 159 GLCVIKPSQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF +AE + ++
Sbjct: 215 GKYGQQLYLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQSLE 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIG 238
K+ L R + +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG
Sbjct: 274 KKQLNARGVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIG 333
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 334 IGVYQLQ 340
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+T + GI +EIA E+ ++ E LT SAGV+ N+LLAK+ SD KP
Sbjct: 112 SLDEAFLDVTAATAD-GILAVEIAREILDRIHRETRLTASAGVSYNKLLAKLASDWRKPQ 170
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE---MLQKGSLLCAV 120
G FV+P R + F++ LP+ K+ G+G T L GI+T + M Q+ + C
Sbjct: 171 GLFVIPPKRG--LDFLAPLPVGKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRC-- 225
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F + A +F V G+ R RKS+ +ERTFS ED+ + L ++AE ++A
Sbjct: 226 FGKAGA-WFYEVARGIDRRPVQPTRQRKSVGTERTFSENLEDRGTMLATLQQMAEQVAAR 284
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLI 237
+Q L G T+ +K + F TRA T + ++E I + LL +P S+RL+
Sbjct: 285 LQALALAGYTVNIKARFPDFATVTRAHTATEVTGNTEAIAALLTELLDRAVPQGASVRLL 344
Query: 238 GLRVT 242
G+ V+
Sbjct: 345 GITVS 349
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 14/250 (5%)
Query: 2 AASLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ +LDEAYLDIT+ +R IS I++ ++ + ++ LTCS GV+ N+ LAK SD
Sbjct: 106 SVALDEAYLDITD--NKRHISDSIQVGRMIQAEILKQTKLTCSVGVSYNKFLAKEASDYA 163
Query: 61 KPNGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP G V+ P D + F+ LPI K G+GK T + D+ GIN +++Q +
Sbjct: 164 KPFGLTVIEPKD---AIEFLKRLPIEKFRGVGKKTVPKMHDL-GINDGADLIQWSQMDLI 219
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
G+ AR RKS+ ERTF E+++ + +L IAEM++A
Sbjct: 220 KHFGKFGYVLYERARGIDKRPVEYARVRKSVGKERTFGPELENQSQVDDQLKHIAEMVAA 279
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYI-SSSEDILKHASVLLKAELP---VSL 234
+MQ++ G+TL LK++ F T+ ++L YI ++ D + AS LL AE+P +
Sbjct: 280 EMQQKKKHGKTLVLKIRYRDFSTFTKRISLDNYIHNNPSDYYELASELL-AEMPDIVGGV 338
Query: 235 RLIGLRVTQF 244
RL+G+ +T
Sbjct: 339 RLLGITLTNL 348
>gi|168179226|ref|ZP_02613890.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
gi|182669759|gb|EDT81735.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
Length = 349
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQDMIP--SILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ ++K++
Sbjct: 332 TVSNLGKNKIK 342
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 134/255 (52%), Gaps = 9/255 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 124 SLDEAYLDVTENLKGLRLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPD 182
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ R F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 183 GLFVITPKRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 239
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 240 KSGPYFYWIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 299
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G
Sbjct: 300 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPVPKGIRLLG-- 357
Query: 241 VTQFNEDKVRAPSDP 255
VT + DKV S+P
Sbjct: 358 VTLSSLDKVDDRSEP 372
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 135/253 (53%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SG+E IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 215 EAFGSFGRSLYNRARGVDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ ++ F +
Sbjct: 332 YRLVGVGLSGFRD 344
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 142/259 (54%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 172 YGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 224
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKSI ERT+ + LLYR +
Sbjct: 225 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKE 275
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 276 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEE 335
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 336 IGKIEKGIRLLGVTVTNFQ 354
>gi|440782777|ref|ZP_20960697.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
gi|440219823|gb|ELP59033.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
Length = 347
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+T V R+ + IA ++ + +E GL S G++ N+ LAK+ SD NKPN
Sbjct: 101 SIDEAYLDLTHVNRD----SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPN 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G ++ + + F L I K+ G+GK + L ++ GI T EE+ + + L +F
Sbjct: 157 GLKIIKKSDVPKILF--PLSIDKVHGLGKKSVKKLNNI-GIFTVEELYKLSVNFLVDLFG 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ + R RKSI E T + T+D+ + + A ++ M+
Sbjct: 214 KFGPEIYDRIR-GIDNREVKILRERKSIGKETTLINDTDDEEDIKPYIKSFASSIANIMK 272
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLR 240
+ L G+ +T+K++TASF T++ TL YI+S EDI + A S+L K +L +RLIG+
Sbjct: 273 NKNLSGKNITIKIRTASFINHTKSKTLTYYINSEEDIYREACSILEKLKLEEKIRLIGIS 332
Query: 241 VTQFNEDKV 249
++ F E K+
Sbjct: 333 ISSFKEKKI 341
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 15/257 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D+TE+ + + +A E++ +V E GL+CS G+APN+LLAK+ SD++KP+
Sbjct: 113 GIDEIYIDLTEMSADT----LPLANEIKAAVREATGLSCSIGIAPNKLLAKIASDLDKPD 168
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G VL +A ++ LP+ KI GIG L+ GI T ++ +LL F
Sbjct: 169 GLTVLAPSDLAARVWL--LPVNKINGIGPKAGDRLQG-LGIRTIGDLAGAAPALLERHFG 225
Query: 123 HSTADFFLSVGLGLG-----STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
+ + GL + + P++ R++ + ER +D+ALL L + E ++
Sbjct: 226 ARMGGWLIRAAHGLDEQPIVTESEPRSMTRET-TFERDLHPRQDRALLTAALTGLCERVA 284
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRL 236
D+ G RGRT+ +KL+ F TR VTL+ + +ED+L + L + L +RL
Sbjct: 285 GDLAARGYRGRTIGIKLRYHDFRTLTRDVTLRNPVCRAEDLLASSRECLRRVPLDRRIRL 344
Query: 237 IGLRVTQFNEDKVRAPS 253
+G+R D P+
Sbjct: 345 LGVRAGALVADSQEGPA 361
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 24/247 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ E+ S IA +R + + LT SAGV+ N++LAK+ SD+NKPN
Sbjct: 101 SLDEAYLDVTDSPYEKN-SATLIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ ++ + FI++LP++K GIGK T +L D+ GI T ++ + +
Sbjct: 160 GIAVITPEQG--LDFIANLPVKKFHGIGKATVKMLHDM-GIFTGLDLRNTPADVLKQHFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDK---ALLYRKLAEIAEMLSA 178
DFF + G+ + R KS+ SE TF + +DK A LYR+ ++ +
Sbjct: 217 KRGDFFHQIAHGIDNREVKAERNHKSVGSETTFVHNTMDDKVIVAALYRENSQAFK---- 272
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED------ILKHASVLLKAELPV 232
D+QK+ + RT+T+K+K + F V TR+ ++ + D L H + L LPV
Sbjct: 273 DLQKKQRKARTITIKIKYSDFSVITRSHSISSHFEQESDAHYWIQWLYHHTPKL---LPV 329
Query: 233 SLRLIGL 239
RL+G+
Sbjct: 330 --RLVGV 334
>gi|410450101|ref|ZP_11304144.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
gi|410016110|gb|EKO78199.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
Length = 360
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 144/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRIELTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LPI G+GKVT ++++ GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPIGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPT 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 139/256 (54%), Gaps = 27/256 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F+ LP+ ++ G+GKV E L GI TC + L++ SL+
Sbjct: 158 RKPDGQFVIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGD-LRRWSLVD- 212
Query: 120 VFSHSTADFFLSV---GLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAE 174
+ F S+ G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 213 -LEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLGEAIVQLAE 269
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 270 KTWNATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPA 328
Query: 233 S--LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 329 ETRYRLVGVGLGGFRE 344
>gi|390444078|ref|ZP_10231861.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
gi|389665309|gb|EIM76780.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
Length = 367
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE + G S I +A +R +++E GLT SAGV+ N+ LAK SD+ KP
Sbjct: 114 SLDEAFLDVTE--NKFGYKSAIYMAYLIRKRIFQETGLTASAGVSYNKFLAKTASDLRKP 171
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQ +LP D F+ LP+ K G+GKVT L + FGI + ++ K L +
Sbjct: 172 NGQAVILPED---AAEFLERLPVEKFYGVGKVTAAKL-NRFGIYSGADL--KSFSLAFLT 225
Query: 122 SH--STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
H + + + G+ + R RKSIS E TF ++ L + L + E L
Sbjct: 226 KHFGKSGQHYYQIVRGIHDSPVQPDRMRKSISVESTFEQDISARNELDF-ALQRLLEDLK 284
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRL 236
++K+GL+GRT LKLK + F +TR+ + + YI E + + LL+ E L +RL
Sbjct: 285 KRLRKQGLKGRTAVLKLKYSDFSQQTRSRSQEHYI-PEEALEEFYRALLEQEPLKQPIRL 343
Query: 237 IGLRVTQFN 245
+G+ + + N
Sbjct: 344 MGVGLQKLN 352
>gi|299821605|ref|ZP_07053493.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
gi|299817270|gb|EFI84506.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
Length = 356
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ S +A++++ +++ E GLT SAGV+ N+ +AK+ SD +KP
Sbjct: 104 SLDEAYLDVTD--NKVGMKSATYLAQDIQRTIFRELGLTASAGVSYNKFIAKIASDYHKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAV 120
+G V+P + F+ +PI K G+GKVT L + GI T ++ + LL +
Sbjct: 162 HGITVVPPEEAE--AFLEGIPITKFYGVGKVTAEKLHRL-GIYTGADLKAWSEWDLLREL 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
H + V G S R RKS+ E TF D+ ++ R L + A +S
Sbjct: 219 NKHGY-QLYRHV-RGQSSNIVNPNRDRKSVGKETTFEKDVWDEIMIQRYLRKFAAQISER 276
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 237
+QK G+T+ LK++ F TR +TL +Y++ SE I + LL A S+RLI
Sbjct: 277 LQKIHKNGKTVVLKIRYRDFTTYTRRLTLSEYVNDSEAIFQAGKALLNASYSGEESIRLI 336
Query: 238 GLRVTQF 244
GL VT
Sbjct: 337 GLTVTNL 343
>gi|354334968|gb|AER23910.1| DNA-directed DNA polymerase [Variovorax sp. HH01]
Length = 397
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 11/245 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A L+ ++++ GLTCS GVAPN+L+AK+ S+ NKPN
Sbjct: 123 GVDEVYIDFTDVPGGQRDGGRSLARLLQKAIFDATGLTCSIGVAPNKLIAKMASEFNKPN 182
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G ++ D + I LP RK+ GIG K E + R FGI T ++ ++ L A F
Sbjct: 183 GISIVYEDDLE--KLIWPLPCRKVNGIGPKADEKLKR--FGIETVGQLAVRDRDWLIANF 238
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLS 177
+T + V G S+S E TF D+A L + E ++
Sbjct: 239 GKATGAWMHEVSWGRDDRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTRLCEQVA 298
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
AD+Q++G G+T+ +KL+ F + TR T++++ ++ I + + LK L LRL
Sbjct: 299 ADLQRKGYVGKTIGIKLRYDDFRIATRDQTIERFTDDAKTIRQTGGLCLKRVPLERPLRL 358
Query: 237 IGLRV 241
+G+RV
Sbjct: 359 LGVRV 363
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 126 SLDEAYLDVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPN 184
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCA 119
GQFV+ P++ V F+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L
Sbjct: 185 GQFVIQPHE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLN 238
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAE 174
+F + G+ R RKSI ERT S + + ALL AE+
Sbjct: 239 IFGKMGKRIW-DFSHGIDEREIQAHRERKSIGVERTLSENIRHLEQGIALLDNLYAELIR 297
Query: 175 MLSADMQKEGLRG-RTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPV 232
+ L R + +KLK F+V T T L I S + +L+ + +
Sbjct: 298 RIERSAPNIPLTAFRKIGVKLKFEDFQVTTLEKTGLPLSIKSFQQLLEQ---IWQRSQGK 354
Query: 233 SLRLIGLRVT 242
S+RL+GL VT
Sbjct: 355 SIRLVGLHVT 364
>gi|357634774|ref|ZP_09132652.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
gi|357583328|gb|EHJ48661.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
Length = 398
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 127/247 (51%), Gaps = 6/247 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+D+T G + ++ V E GL CS G+AP + +AK+ SD +KP
Sbjct: 98 ASIDEAYVDVTGTETLFGPPE-ALGRRVKQMVREATGLPCSVGIAPVKFIAKIASDYDKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ + V F++ LP+ KI G+G+ E L GI ++L
Sbjct: 157 DGLTVVSEADVPV--FLADLPVGKIPGVGRRAEASL-SRLGIRRVGDILAYPPEFLERHC 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ G GST AR KS+S+E TF T D+ L L +E + +++
Sbjct: 214 GKWGLDLYAKAHGRGSTTVAVAREAKSVSAENTFDTDTADRERLASWLLHQSERIGRELR 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
++GL GRT+TLKLK F TR+ TL + I S I A+ LL AE LP +RLIG+
Sbjct: 274 QDGLAGRTITLKLKFNDFRQITRSRTLPEPIDSDGAIFAAATALLDAEPLPRPVRLIGVG 333
Query: 241 VTQFNED 247
V+ F +
Sbjct: 334 VSNFGRE 340
>gi|334140370|ref|YP_004533572.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
gi|333938396|emb|CCA91754.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
Length = 374
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 117 SLDEAYLDVTADLKGLG-SATRIAEEIRRRIKSETGLTASAGVSYNKFLAKLASDQNKPD 175
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
G V+ P + A F++ LP+R+ G+G + E + R GI T ++ K
Sbjct: 176 GLCVIRPGEGAA---FVAMLPVRRFHGVGPRGAEKMAR--LGIETGADLRGKDIHFLRQH 230
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSA 178
S A++ G+ R RKS+ ERTF ED A L + I +++
Sbjct: 231 FGSFAEYLYRAARGVDLRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWD 288
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRL 236
+++ RGRT+TLKL+ A F TRA +L +++ E+ + LL LP +RL
Sbjct: 289 RIERAETRGRTITLKLRYADFRTITRARSLSHFVTGKEEFGQIGHALLDDLMPLPQPIRL 348
Query: 237 IGLRVTQFNEDKVRA 251
+GL ++ ++ A
Sbjct: 349 MGLTLSALEREEAVA 363
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +LP+ KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VSEFIKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T ++ + AL LY++L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+S ++ R + +KLK F+V T T L + S + +L + K S
Sbjct: 279 RVSCNIPLSAF--RKIGIKLKFEDFQVTTLEKTGLSLSLESFQQLLPQIFMRSKGR---S 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 15/257 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP
Sbjct: 100 SLDEAYLDVT--INKCGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ + V+ F+ LP+RK+ G+GKVT+ L + GI+T ++ + +
Sbjct: 158 DGQFVVRPGK--VLDFLQPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSAEELEHYF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
+ G+ + + +S+E TFS ED L L + +A+ +
Sbjct: 215 GRYGRRLYELARGIDEREVQTDQPLQQVSAETTFS--EDIRLDALGDAIDRMADRVWDQA 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
K+G GRT+ LKLKT F + TR+ T S+ ++ A +L + ELP RL
Sbjct: 273 LKKGALGRTVVLKLKTDRFRILTRSQTSPNPPGSAAELAAVAKLLCERVELPPETLYRLA 332
Query: 238 GLRVTQFNE--DKVRAP 252
G+ ++ F + ++ R P
Sbjct: 333 GVGMSNFADPAEQARQP 349
>gi|187735823|ref|YP_001877935.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
gi|254781918|sp|B2UKN1.1|DPO4_AKKM8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187425875|gb|ACD05154.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
Length = 359
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE + GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP
Sbjct: 102 SLDEAFLDVTE--NKPGIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKP 159
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G F + R FI++LPI G+G T +R + N + + L F
Sbjct: 160 DGLFTIHPSRAE--KFIAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFG 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
+ A F+ + G+ +R RKS+ E T+ +VT +AL R L +AE L+ +
Sbjct: 218 KTGAIFY-NFARGVDDRPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRL 275
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLI 237
+ G RG TLTLK+K F +TR T+ + ++ E IL A L++ EL + RL+
Sbjct: 276 ARSGFRGNTLTLKVKFPDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLL 334
Query: 238 GLRVTQFNEDK 248
GL V+ E++
Sbjct: 335 GLSVSHPQEEQ 345
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 144/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LP+ G+GKVT ++++ GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPVGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPT 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|456877106|gb|EMF92144.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. ST188]
Length = 360
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LPI G+GKVT ++ + GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPT 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 138/245 (56%), Gaps = 11/245 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD++ + + + +EI EE++ V +E GLT S G++ N+ LAK+ SD NKP
Sbjct: 91 VSIDEAYLDVSNIEK----NPLEIVEEIKYKVLKETGLTMSRGISYNKFLAKLASDWNKP 146
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
NG ++ + V + L + + GIGK + L ++ GI T +E+++ L F
Sbjct: 147 NGIKIITKE--MVPDILLPLSVSSVHGIGKKSSQKLNNI-GIYTIKELMRLPEDFLVDFF 203
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S + + + G+ + + RKSI ERTF+ T++K +L L + + L +
Sbjct: 204 GKSGREIYNRIR-GIDNRTVNISSERKSIGVERTFTNHTKNKEILQEYLYKFSLELELSL 262
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGL 239
+ + ++ +T+TLK+K +F +TR +TL +I+SS++I + LLK + +RLIGL
Sbjct: 263 KSKEMQAKTITLKIKDTNFRTQTRGITLSNHITSSKEIFNISKNLLKEVSISADIRLIGL 322
Query: 240 RVTQF 244
V+
Sbjct: 323 SVSNL 327
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 139/252 (55%), Gaps = 19/252 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP
Sbjct: 104 SLDEAYLDVTH--NKGGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+GQFV+ + V+ F+ LP+RK+ G+GKVT+ L + GI+T + L SL L
Sbjct: 162 DGQFVIRPTK--VLEFLQPLPVRKVPGVGKVTQARL-EQLGIHTVGD-LATHSLEELAHY 217
Query: 121 FSHSTADFF-LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
F + L+ G+ T Q + +S+E TFS ED L L + +A +
Sbjct: 218 FGRYGRRLYELARGIDEREVQTDQP--LQQVSAETTFS--EDIRLDALGEAIDRMAGKVW 273
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--L 234
K+G GRT+ LKLKT F + TR+ T S+ ++ A +L + ELP
Sbjct: 274 DQALKKGALGRTVVLKLKTDRFRILTRSQTSLNPPGSAAELAAVARLLCERVELPPETLY 333
Query: 235 RLIGLRVTQFNE 246
RL G+ ++ F +
Sbjct: 334 RLAGVGMSNFAD 345
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT++ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITDLVRP-DLPASQIAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V I SL I G+GK ++ ++ D I T +++ QK L +F
Sbjct: 162 GMTVI--DYNNVHDIIMSLDIGDFPGVGKASKKVMHDN-DIYTGQDLYQKSEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKSI +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRIRKSIGTERTFATDVNDDEQIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
+ +T+T+K+KT FE ++ +L+ +++ DI A L + + +RLIG
Sbjct: 277 NELQKSAKTVTVKIKTYQFETYSKQTSLRDSVNTENDIYNIAYALYNELKDPDIPIRLIG 336
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNFM 264
+ V PS T+ +F+
Sbjct: 337 VTVGNLE------PSSYKNMTIYDFI 356
>gi|421595932|ref|ZP_16039866.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404271960|gb|EJZ35706.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 393
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 135/249 (54%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +IA ++R V E GL SAG++ N+ LAK+ SD
Sbjct: 140 SLDEAYLDVTE-----NLQGIPLARDIALKIREKVRAETGLNASAGISYNKFLAKLASDH 194
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLC 118
KPNGQFV+ + F+ LP+ K GIG T + + G+ T ++ Q + +
Sbjct: 195 RKPNGQFVISPEMGP--AFVEMLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLAFMN 251
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLS 177
A F S A ++ + G+ R RKSI +E TFS D L +L + + +
Sbjct: 252 ANFGKSGA-YYYWISRGVDERPVRANRIRKSIGAENTFSTDLDAYDALAAELRPLVDKVW 310
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
+ G RGRT+TLK+K A FE+ TR+ ++ ++ +D+ + A LL+ E+P+ +R
Sbjct: 311 RHCEATGNRGRTVTLKIKFADFEIITRSRSIPAPVARRDDLERLACGLLEIEMPLPKRVR 370
Query: 236 LIGLRVTQF 244
L+G+ ++
Sbjct: 371 LLGVSLSAL 379
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LPI G+GKVT ++ + GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPT 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD++E SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVSEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++A
Sbjct: 215 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 136/252 (53%), Gaps = 17/252 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T RG+ + E A+E+R + E GLT SAGV+ N+ LAK+ SD KP
Sbjct: 105 SLDEAYLDVT--ANRRGLETASETAKEIRARILETTGLTASAGVSYNKFLAKLASDQRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQFV+P + F+ +LPI + G+G VTE ++ + G++T E++ ++
Sbjct: 163 NGQFVVPPGKGE--AFVQTLPIGRFHGVGAVTEAKMKRL-GVHTGEDLHRQSLAFLQQHF 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD--- 179
+ ++ ++ G R RKS SE TF D+ + + E + AD
Sbjct: 220 GRSGPWYYAIARGEDDRRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVW 275
Query: 180 --MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLR 235
K G R RT+T+K+K A F+ TR+ + ++ E + + + L+++ P + +R
Sbjct: 276 AWCAKTGDRARTVTVKIKWADFQQATRSRSRPSPVADHETLRQTSLDLIRSVYPPRLGIR 335
Query: 236 LIGLRVTQFNED 247
L+G+ ++ F ++
Sbjct: 336 LVGVTLSNFEQE 347
>gi|359398362|ref|ZP_09191383.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
gi|357600274|gb|EHJ61972.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
Length = 401
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 133/255 (52%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+
Sbjct: 144 SLDEAYLDVTADLKGIG-SATRIAEEIRRRIRTETGLTASAGVSYNKFLAKLASDQNKPD 202
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
G V+ P + A F++ LP+R+ G+G + E + R GI T ++ +
Sbjct: 203 GLCVIRPGEGAA---FVAGLPVRRFHGVGPRGAEKMAR--LGIETGADLRDRDIHFLRQH 257
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSA 178
S A++ G+ R RKS+ ERTF ED A L + I +++
Sbjct: 258 FGSFAEYLYRAARGVDLRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWD 315
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRL 236
+++ RGRT+TLKL+ A F TRA +L +++ E+ + LL LP +RL
Sbjct: 316 RIERAEARGRTVTLKLRYADFRTITRARSLPHFVTGKEEFGQIGHALLDDLMPLPQPIRL 375
Query: 237 IGLRVTQFNEDKVRA 251
+GL ++ ++ A
Sbjct: 376 MGLTLSALEREEAVA 390
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 144/263 (54%), Gaps = 14/263 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ R G+ + E A E+R + EE GLT SAG++ N+ LAK+ SD KP
Sbjct: 105 SLDEAYLDVTDNLR--GLPTASETAVEIRARILEETGLTASAGISYNKFLAKLASDQRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQFV+P R F+ LP+++ G+G VT + + GI T E++ ++ L
Sbjct: 163 NGQFVVPPGRGE--AFVEILPVKRFYGVGPVTAAKMSRL-GIETGEDLRRQSLALLQQHF 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ ++ ++ G R RKS SE TF +T+ A+ LA ++
Sbjct: 220 GKSGPWYYAISRGEDHRAVNPNRERKSSGSETTFGSDLTDPSAIEAGVLAMTGDVWGW-C 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIG 238
+K GRT+T+K++ A F+ TR+ + + ++S + + + + +L+++ P + +RL+G
Sbjct: 279 EKSDAYGRTVTVKVRWADFQQSTRSRSFPEPVTSKDRLEEISLLLVRSLYPPAKGIRLVG 338
Query: 239 LRVTQFNEDKVRAPSDPTQKTLT 261
+ ++ F KV APS Q L
Sbjct: 339 VSLSNF---KVPAPSASDQLALA 358
>gi|259046578|ref|ZP_05736979.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
gi|259036743|gb|EEW37998.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
Length = 352
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 15/253 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T RGI S +A ++ VYE+ GLTCS GV+ N+ LAK+ S KP
Sbjct: 101 SIDEAYLDVTN--NSRGIASATLVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKP 158
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G V+ + FI ++PI G+GKV+ LR GI T E++L + L + F
Sbjct: 159 SGITVITPEN--AQEFIRTIPIGDFYGVGKVSAEKLRRA-GIETGEDLLHLSKAELESRF 215
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
+ + V G+ + R RKS+ SERT T D +L L + + +++ +
Sbjct: 216 GNLGPRLYAQVR-GISNDQLTLYRERKSMGSERTLIKDTTDHGILSEYLEKFSLEIASML 274
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLI 237
QK L RT++LKL+ ++F +++VTL+ Y + E+IL+ A L + E P+ RLI
Sbjct: 275 QKRALASRTISLKLRDSNFNTTSKSVTLRDYFNKKEEILQLALQLFEEMMDEKPI--RLI 332
Query: 238 GLRVTQFNE-DKV 249
GL V+ + DK+
Sbjct: 333 GLSVSHLEKTDKI 345
>gi|386399214|ref|ZP_10083992.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
gi|385739840|gb|EIG60036.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
Length = 367
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 143/267 (53%), Gaps = 24/267 (8%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +IA ++R + E GL SAG++ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTE-----NLQGIPLARDIALKIRERIKAETGLNASAGISYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQFV+ + F+ +LP+ K GIG T + + + Q + A
Sbjct: 168 RKPNGQFVISPEMGP--AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNA 225
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
F S A ++ + G+ R RKSI +E TFS +TE L+ +L + + +
Sbjct: 226 NFGKSGA-YYYWISRGVDERPVRANRVRKSIGAETTFSSDLTEFDTLVA-ELKPLVDKVW 283
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G RGRT+TLK+K A FE+ TR+ + ++ +D+ + A LL+ E+P+ S+R
Sbjct: 284 RHCEATGSRGRTVTLKIKFADFEIITRSRSALSPVAGRDDLERLACGLLEGEMPLPKSVR 343
Query: 236 LIGLRVT--QFNEDKVRAPSDPTQKTL 260
L+G+ ++ Q +D ++P Q TL
Sbjct: 344 LLGVSLSSLQAGDD-----AEPPQLTL 365
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 13/244 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R +S +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLSASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK +E I+ GI +++ QK L +F
Sbjct: 162 GMTVI--DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLI 237
K +T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLI
Sbjct: 277 NKLQKSAKTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLI 335
Query: 238 GLRV 241
G+ V
Sbjct: 336 GVTV 339
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 27/256 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S +AE +R + E GLT SAGVAPN+ LAK+ SD NKP+
Sbjct: 108 SLDEAYLDVT-TPRTGLPSATAVAEAIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPD 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTC--------EEMLQK- 113
G FV+ P V F++ LP+ +I G+GKV + L + GI T EE+ Q+
Sbjct: 167 GLFVIRPQH---VERFLTPLPVERIPGVGKVMQGKLAE-LGIATVGELRSRPLEELQQRF 222
Query: 114 GSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIA 173
GS A++ + G+ + +S+SSE TF+ L + ++A
Sbjct: 223 GSFGAALYRRAR---------GIDERPVEPDQPVRSVSSEDTFAGDLPLEALEPAIRQLA 273
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV 232
E ++ G G T+ LKLKTA F + TR++TL++ +S+ ++ A L + LP
Sbjct: 274 EKTWNASRRAGRDGHTVVLKLKTAQFRILTRSLTLERPPASAAELADLACALRERVSLPA 333
Query: 233 S--LRLIGLRVTQFNE 246
RL+G+ ++ F +
Sbjct: 334 ETRYRLVGVGLSGFRD 349
>gi|85709267|ref|ZP_01040332.1| DNA polymerase IV [Erythrobacter sp. NAP1]
gi|85687977|gb|EAQ27981.1| DNA polymerase IV [Erythrobacter sp. NAP1]
Length = 383
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 135/253 (53%), Gaps = 20/253 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKP
Sbjct: 120 SLDEAYLDVTE--DRLGIGSATRIAELIRQEIRAKTKLTASAGVSYNKFLAKLASDQNKP 177
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
NG V+ + A F++ LPIR+ G+G E ++ + GI T ++ K L A F
Sbjct: 178 NGLCVIRPGQGA--DFVAGLPIRRFHGVGPKAEEKMKRL-GIETGADLAAKDIEFLRANF 234
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEML-- 176
S AD+ G+ R RKS+ ERTFS ED A L L I E++
Sbjct: 235 G-SFADYLYRAARGIDLRPVRAHRVRKSVGGERTFS--EDISSGAALRDTLENIIEIVWG 291
Query: 177 ---SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 233
+A + RGRT+TLK+K F++ +RA ++ +I ++ + + LL+ LP+
Sbjct: 292 RIENASKDDKPTRGRTITLKVKFTDFQIMSRAKSVPHWIEDKQEFARLSRELLEEALPLP 351
Query: 234 L--RLIGLRVTQF 244
+ RL+GL ++
Sbjct: 352 MPIRLMGLTLSNL 364
>gi|422002069|ref|ZP_16349308.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259281|gb|EKT88659.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
Length = 360
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 142/273 (52%), Gaps = 27/273 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDE YLD+T ++ ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPN
Sbjct: 103 SLDEGYLDVT-FNKKNMPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPN 161
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP+D V FI LP+ G+GKVT ++ + GI+T +++ K
Sbjct: 162 GLTVVLPDD---VTAFIDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
T ++ + G R RKS+ SE TF + D+ L+R+L EIA ++
Sbjct: 218 GKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLK 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--------- 232
K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 278 KRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTK 337
Query: 233 SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 338 AIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|94995023|ref|YP_603121.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
gi|189044613|sp|Q1J509.1|DPO4_STRPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94548531|gb|ABF38577.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
Length = 364
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAY+D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP
Sbjct: 114 SIDEAYVDVTN--NKLGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 11/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I + G+GK ++ ++ + GI T +++ K L +F
Sbjct: 162 GMTVI--DYQNVHEILMNLDIGEFPGVGKASKKVMHNN-GIYTGQDLYDKDEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTFS V +D +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G+T+T+K+KT +E ++ +L+ + S DI A L + + +RLIG
Sbjct: 277 NKLQKSGKTVTVKIKTFKYETLSKQTSLRDSVQSENDIYNIAYTLYNDLKDPDIPIRLIG 336
Query: 239 LRVTQFNEDKVR 250
+ V + R
Sbjct: 337 VTVGNLEQSSYR 348
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 124 SLDEAYLDVTENLKGLRLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPD 182
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ R F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 183 GLFVITPKRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 239
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 240 KSGPYFYWIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 299
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G+
Sbjct: 300 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVT 359
Query: 241 VTQFN 245
++ +
Sbjct: 360 LSSLD 364
>gi|345882594|ref|ZP_08834057.1| DNA polymerase IV [Prevotella sp. C561]
gi|345044625|gb|EGW48656.1| DNA polymerase IV [Prevotella sp. C561]
Length = 358
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 41/259 (15%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T+ ++GI ++IA+E++ + E LT SAG++ N+LLAK+ SD+ KP
Sbjct: 92 SLDEAFLDVTD--NKKGIELAVDIAKEIKQKILERTSLTASAGISFNKLLAKIASDMRKP 149
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT--------CEEMLQKG 114
NG F + DR + FI SLP+ K+ G+G T + + ++ G+ T CE ++Q
Sbjct: 150 NGIFTVHPDR--ALDFIGSLPVEKLWGVGPKTANRMHEM-GVFTGAQLRRISCEHLVQVF 206
Query: 115 SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYR 167
+ V+ DF G+ + A RKS+ ERTF ED + LY
Sbjct: 207 GKMGRVYY----DF----SRGIDNRPVVVAYERKSVGCERTF--LEDLHIDTKIIIELYH 256
Query: 168 KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 227
+ E+ E + +++ RGRTLTLKLK + TR++T +K + + +DIL A LLK
Sbjct: 257 IVLELVERI----ERKDFRGRTLTLKLKWDATTQITRSLTQEKVLRTKDDILPLAKRLLK 312
Query: 228 ----AELPVSLRLIGLRVT 242
+ P+ RL+GL V+
Sbjct: 313 DTEYHDRPI--RLMGLSVS 329
>gi|325280117|ref|YP_004252659.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
gi|324311926|gb|ADY32479.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
Length = 363
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 141/276 (51%), Gaps = 37/276 (13%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEA+LD+TE + ++ ++IA ++ + E+ GL SAGV+ N+ LAK+ SD KP+
Sbjct: 105 ALDEAFLDVTENKKNIPLA-VDIARAIKKEIREKLGLVASAGVSYNKFLAKIASDYRKPD 163
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-----------LQ 112
G FV+ + A FI+ LPI GIGKVT H + GI+ ++
Sbjct: 164 GLFVIHPRKAA--AFIARLPIEVFWGIGKVTAHKMH-ALGIHNGAQLRNCSLEFLNRNFG 220
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
K L FSH G+ R RKS+ E TF +T AL+ +L
Sbjct: 221 KAGQLYYDFSH-----------GVDLRPVEVVRIRKSVGCENTFEKDLTTHTALII-ELW 268
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
+A+ L + K G +G TLTLK+K F +TR++++ + + ++IL A LL A L
Sbjct: 269 HVADELIRRLGKAGFKGHTLTLKIKFHDFTQKTRSISVGHELYTMKEILPLAKQLL-AGL 327
Query: 231 PVS---LRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 263
++ +RL+GL V+ + V +P DP Q T
Sbjct: 328 QLTHYRIRLMGLTVS----NPVSSPDDPEQGIPTQL 359
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 136/260 (52%), Gaps = 17/260 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP
Sbjct: 103 SLDEAYLDVT--INKLGLPSATEVAQVIRHQIREETGLTASAGVAPNKFLAKIASDWNKP 160
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G FV+ + V+ F+ LP+RK+ G+GKVT+ L + GI+T ++ + +
Sbjct: 161 DGLFVVRPAK--VLAFLEPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSAQELEHYF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
+ G+ + + +SSE TFS + + +AE + K
Sbjct: 218 GRYGRRLYELARGIDEREVQTDQPLQQVSSETTFSQDIRLDAVGEAIDRMAERVWDQALK 277
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGL 239
+G GRT+ LKLKT F + TR+ T S+ ++ A +L + +LP RL G+
Sbjct: 278 KGALGRTVVLKLKTDRFRILTRSQTSPGPPGSAAELAAVARLLCERVDLPPETLYRLAGV 337
Query: 240 RVTQFNEDKVRAPSDPTQKT 259
++ F +DP ++T
Sbjct: 338 GMSNF--------ADPQEQT 349
>gi|418753975|ref|ZP_13310210.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
gi|409965705|gb|EKO33567.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
Length = 360
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 143/274 (52%), Gaps = 29/274 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V FI LP+ G+GKVT ++ + GI+T +++ K
Sbjct: 161 NGLTVVLPDD---VTAFIDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
T ++ + G R RKS+ SE TF + D+ L+R+L EIA +
Sbjct: 217 FGKTGIYYYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K G+TLTLK+K F ++TR+ TL + I +++++ A+ L + +
Sbjct: 277 KKRNFAGKTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTST 336
Query: 233 -SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMT 265
++RL+G+ + S PT K + F T
Sbjct: 337 KAIRLLGINL-----------SHPTDKEPSLFQT 359
>gi|28210190|ref|NP_781134.1| DNA polymerase IV [Clostridium tetani E88]
gi|28202626|gb|AAO35071.1| putative DNA polymerase IV [Clostridium tetani E88]
Length = 352
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 15/252 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT RE +EI + ++ +++ GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNCGRE----PLEIVKYIKKEIWKREGLTASMGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG ++ D + + LPI K+ G+GK + + ++ GI E+M + L +F
Sbjct: 156 NGVKIIKKD--MIPNILLPLPINKVHGMGKKSVEKMNNI-GIFKIEDMYK---LPLDLFI 209
Query: 123 HSTADFFLSVG---LGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
F L + G + R RKSI +E T T+D + + L ++ +S
Sbjct: 210 EYFGKFGLEIYERIRGFDNREVQVGRERKSIGNETTLRKDTKDTEEIKKYLYTFSKSISE 269
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLI 237
++K + G+T+T+K+K FE T++ TL+ YI+ E I A +L + + LRLI
Sbjct: 270 GLKKNHMWGKTVTVKIKNYKFETTTKSKTLKDYINEEEKIYIEACKILDSINIKEPLRLI 329
Query: 238 GLRVTQFNEDKV 249
GL ++ +E K+
Sbjct: 330 GLTLSNLSESKI 341
>gi|58039310|ref|YP_191274.1| DNA polymerase IV [Gluconobacter oxydans 621H]
gi|81557124|sp|Q5FSM8.1|DPO4_GLUOX RecName: Full=DNA polymerase IV; Short=Pol IV
gi|58001724|gb|AAW60618.1| DNA polymerase IV, damage-inducible protein P [Gluconobacter
oxydans 621H]
Length = 356
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 9/246 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+
Sbjct: 102 SLDEAYLDLTDHLGAYG-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ M F+++LP+ GIG +R GI T ++ ++
Sbjct: 161 GLFVI-TPAMGP-EFVAALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFG 217
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
A F+ + G+ R RKS+ +E+T+ +T + A ++ L +IA L Q
Sbjct: 218 KAATFYYGISRGIDHRPVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQ 276
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ L+ RT+TLK+K A F TRA TL + S E +L+ L+ P +RL+GL
Sbjct: 277 RRQLQARTVTLKVKYADFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGL 336
Query: 240 RVTQFN 245
++ F+
Sbjct: 337 TLSGFH 342
>gi|358012029|ref|ZP_09143839.1| DNA polymerase IV [Acinetobacter sp. P8-3-8]
Length = 351
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 143/265 (53%), Gaps = 22/265 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE + S E+AE +R +++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAFLDVTENLQNIP-SATEVAECIRADIFKTTGLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G ++ + V FI LP++KI G+GKVT+ L+ + + T ++ Q ++L F
Sbjct: 159 GICIIKPSQ--VQHFIHDLPLKKIPGVGKVTQEKLKSL-NLETLGDLQQVDENVLIHHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSA 178
FL G+ R R+ IS E TF S+T+ + E +
Sbjct: 216 KYGKQLFL-YAQGIDERPVQAERQRQQISKEITFDDDLSITQCSPY----WDNLIERVWL 270
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELP--VSLR 235
+QK+ ++ R + +KLK +F+V + + + ++S +D+++ +LL+ ++P + R
Sbjct: 271 SLQKKQMQARGVNVKLKLKNFQVLQHSKSFKLALNSQQDMVQVIKLLLQEMQIPEHLQFR 330
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTL 260
LIG+ + Q E + D TQ +L
Sbjct: 331 LIGVGLYQLTEQQ-----DETQLSL 350
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 7/244 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ G S I IA++++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+
Sbjct: 104 SLDEAYLDVTEDKQQIG-SAIGIAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPD 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +P D+ V F+ SLP+ K G+GKVT + + + T ++ + +
Sbjct: 163 GLTFIPPDK--VEAFMESLPVNKFHGVGKVTAEKM-NTLNLFTGADLKKLTEVELVRLFG 219
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQK 182
F+ + G+ R KSIS+E TF D + + +L +A +++ +Q+
Sbjct: 220 KPGSFYYKIVRGIDDRPVEPNRETKSISAEDTFLNDLDNPVEMKEQLDRLAAVVTNRLQQ 279
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLR 240
L+G+T+TLK++ + F+ TR+ TL + E I +LLK ++ +RL+G+
Sbjct: 280 YELKGKTITLKIRYSDFKQLTRSQTLPAAVCDQETIAATVLQLLLKTDIQEAKIRLLGVG 339
Query: 241 VTQF 244
V+ F
Sbjct: 340 VSNF 343
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 131 SLDEAYLDVTENLKGMEIA-TEIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPN 189
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + F+ +LP+++ G+G T ++ GI T ++ K
Sbjct: 190 GQAVITPKNGPG---FVEALPVKRFHGVGPATAERMQR-HGIETGLDLKSKSLQFLQTHF 245
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF D R +L +AE + +
Sbjct: 246 GKSGSYFYGIARGIDERQVRADRIRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCE 305
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
++G+T+T+K+K + F TR+ T+ Y+S + I+ A LL + P +RL+G+
Sbjct: 306 SHDIKGKTITVKIKYSDFSQATRSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGI 365
Query: 240 RVTQFNEDK 248
++ N ++
Sbjct: 366 TLSSLNTEE 374
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 143/270 (52%), Gaps = 27/270 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP
Sbjct: 100 SLDEAFLDVTE--NKKGMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF 121
+G F + DR + F+ SLP+ K+ G+G T + D+ G+ T ++ Q L VF
Sbjct: 158 DGLFTVHPDR--ALGFVGSLPVEKLWGVGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAE 174
+ + G+ + RKS+ ERTF ED + LY + E+ E
Sbjct: 215 G-KMGNIYYDFSRGIDNRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVE 271
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AEL 230
L+ + G GRTLTLKLK + TR++T Q+ + + +DIL A LLK +
Sbjct: 272 RLA----RSGFEGRTLTLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDR 327
Query: 231 PVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 260
PV RL+GL V+ +K + P + L
Sbjct: 328 PV--RLMGLSVSSPLPEKEESSHVPVEGLL 355
>gi|383811006|ref|ZP_09966486.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356411|gb|EID33915.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
Length = 378
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 138/258 (53%), Gaps = 29/258 (11%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++GIS I+IA+E++ ++E LT SAGV+ N+LLAK+ SD+ KP
Sbjct: 117 SLDEAFLDVTE--NKKGISMAIDIAKEIKQKIFERTSLTASAGVSYNKLLAKIASDMRKP 174
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G +++ DR M FI SLPI K+ G+G T + ++ G+ E+ L ++
Sbjct: 175 DGIYIVHPDR--AMDFIGSLPIEKLWGVGPRTAAKMHEM-GVFKGEQ------LRNISYN 225
Query: 123 HSTADF------FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKAL--LYRKLAE 171
H T F + + G+ +R RKS+ E TF E K + LY E
Sbjct: 226 HMTQVFGKMGKIYYNFSRGIDERPVIVSRERKSVGCEHTFREDLHIESKIIIELYHLTLE 285
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AE 229
+ E L+ + GRTLTLKLK + TR++T K + + DIL A +LL
Sbjct: 286 LVERLT----RNQFEGRTLTLKLKWDATTQITRSLTQGKILRTKHDILPLAKLLLSETGY 341
Query: 230 LPVSLRLIGLRVTQFNED 247
S+RL+GL V+ D
Sbjct: 342 KKHSIRLMGLSVSSSTTD 359
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI T +++ K L +F
Sbjct: 162 GMTVI--DYRNVHDILMALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS DI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|300727423|ref|ZP_07060832.1| DNA polymerase IV [Prevotella bryantii B14]
gi|299775303|gb|EFI71902.1| DNA polymerase IV [Prevotella bryantii B14]
Length = 363
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 24/258 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+T V ++ ++IA+E++ ++E LT SAG++ N+ LAK+ SD KP+
Sbjct: 102 SIDEAFLDVT-VNKKGSDLAVDIAKEIKQRIFETVHLTASAGISYNKFLAKIASDYRKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ D+ + FI+ LPI K G+G T + V N + + L +F
Sbjct: 161 GLFVIHPDK--ALDFIAQLPIEKFWGVGPKTALRMHHVGIFNGLQLRQCSVNHLKELFGK 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEML 176
S F+ + G+ RKS+ E+TF ED ++ LY + E+ E L
Sbjct: 219 SGPVFY-NFARGIDERPVISEHVRKSVGCEQTF--LEDISIRSSVIIALYHIVLELVERL 275
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-----AELP 231
+K+ RG+TLTLK+K F +++++T QKY+ + IL A LL A P
Sbjct: 276 ----KKDDFRGKTLTLKIKYGDFTQKSKSITQQKYLREKDTILPLAKQLLTQFRFDANHP 331
Query: 232 VSLRLIGLRVTQFNEDKV 249
+ RL+GL V+ +E+ +
Sbjct: 332 I--RLMGLSVSNPHEEVI 347
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 11/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + L I G+GK ++ ++ D GI T +++ K L +F
Sbjct: 162 GMTVI--DYQNVHEILMHLDIGDFPGVGKASKKVMHDN-GIFTGQDLYNKDEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTFS V +D +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G+T+T+K+KT +E ++ +L+ + S DI A L + V +RLIG
Sbjct: 277 NKLQKSGKTVTVKIKTFQYETLSKQTSLRDSVQSETDIYNIAYSLYNELKDPDVPIRLIG 336
Query: 239 LRVTQFNEDKVR 250
+ V + R
Sbjct: 337 VTVGNLEQSSYR 348
>gi|418398635|ref|ZP_12972189.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
gi|359507493|gb|EHK80001.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
Length = 346
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 92 SLDEAYLDVTENLKGMQLA-TEIAEEIRARIRAETQLTASAGVSYNKFLAKIASDQRKPD 150
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P A F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 151 GLFVITPKHGPA---FVQALPVKKFHGVGPATAEKMKKL-GIETGADLKSRDLAFLQQHF 206
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM-- 180
+ +F + G+ R RKS+ +E TF ED L A + ++
Sbjct: 207 GKSGPYFYWIARGIDEREVKPNRIRKSVGAEDTFR--EDVHYLEAARAGLKPLIDKVWHY 264
Query: 181 -QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
+ G+RG+T+TLK+K A F TR+ T+ I+S+ ++ + A +LL P + +RL+
Sbjct: 265 CEASGIRGKTVTLKVKWADFTQITRSKTIVAPIASAAEMGEIAELLLSPIFPAAKGIRLL 324
Query: 238 GLRVTQFNE 246
G+ ++ ++
Sbjct: 325 GVTLSSLDQ 333
>gi|303248472|ref|ZP_07334730.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
gi|302490092|gb|EFL50012.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
Length = 388
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 6/247 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+DIT G + L++ + E GL CS G+AP + +AK+ SD +KP
Sbjct: 98 ASIDEAYVDITGTETLFGPPET-LGRRLKSMIREATGLNCSVGIAPVKFIAKIASDYDKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G ++ D++++ F++ LP+ KI G+GK + L + GI E+ Q
Sbjct: 157 DGLTIVAPDQVSL--FLADLPVGKIPGVGKRAQAALSRL-GIRVVGEIPQYPPEFWQRHL 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ G GS R KS+S+E TFS T D+A L L +E + +++
Sbjct: 214 GKWGLDLYARACGQGSDTVNPCREAKSVSAENTFSTDTADRARLAAWLLHQSERVGRELR 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
++ GRT+TLKLK F TR+ TL +S I A LL+AE LP LRLIG+
Sbjct: 274 RDNQSGRTITLKLKFNDFRQITRSRTLPDPTASDTVIYAVAKELLEAEPLPKPLRLIGVG 333
Query: 241 VTQFNED 247
V+ F +
Sbjct: 334 VSNFGNE 340
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 11/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + IA +R ++E+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DMPASRIANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I + G+GK ++ ++ D GI T +++ K L +F
Sbjct: 162 GMTVI--DYQNVHEILMNLDIGEFPGVGKASKKVMHDN-GIFTGQDLYDKDEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTFS V +D +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G+T+T+K+KT +E ++ +L+ + S DI A L + V +RLIG
Sbjct: 277 NKLQKSGKTVTVKIKTFKYETLSKQTSLRDSVQSENDIYNIAYTLYSDLKDPDVPIRLIG 336
Query: 239 LRVTQFNEDKVR 250
+ V + R
Sbjct: 337 VTVGNLEQSSYR 348
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA ++ VYE LTCSAGV+ N+ LAK+ S +NKPN
Sbjct: 101 SLDEAYLDITHLVRP-DLGASQIAASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ + V + +LPI + G+GKVTE + + I T +++ Q + L F
Sbjct: 160 GLTVIHYNN--VQQILDALPIGEFPGVGKVTEQKMHKL-KIATGKDLRQLSEIELIEQFG 216
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
+ + + G+G+ R RKSI E TF+ + D++ + R + E E ++A +Q
Sbjct: 217 KKGSSLY-NKARGIGTDIIEVERERKSIGKETTFAHDKNDESYILRVMNEQTEKVAAKLQ 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIG 238
T+T+K+KT+ FE T+ L + ++ I A VLL +L + +RL+G
Sbjct: 276 SMNKVADTITVKIKTSDFESHTKQTKLLDFTDQADKIYATA-VLLYTDLKLENEEIRLVG 334
Query: 239 LRV 241
++V
Sbjct: 335 VQV 337
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 142/259 (54%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 172 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 224
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKS ERT+ + LLYR +
Sbjct: 225 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKE 275
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 276 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEE 335
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 336 IGKIEKGIRLLGVTVTNFQ 354
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 93 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 152 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 209 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 267 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 326
Query: 239 LRV 241
+ V
Sbjct: 327 VTV 329
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDK-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE +++ S IA+ ++ + E GLT SAGV+ N+ +AK+ SD KPN
Sbjct: 103 SLDEAFLDVTE-NKKKIKSATIIAKLIKEDIKRETGLTASAGVSYNKFVAKLASDYQKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
G V+ D V F+ +LP++K G+GKVTE +L++ GINT + L+ SL L +F
Sbjct: 162 GLTVITEDN--VQEFLDTLPVKKFFGVGKVTERVLKNN-GINTGYD-LRNTSLEKLEKIF 217
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE--DKALLYRKLAEIAEMLSAD 179
+ + + + G+ + R RKSI +E T + D A L E+ E ++
Sbjct: 218 KNRGLELY-NFARGIDNRPVNPTRIRKSIGAETTLIENKNIDDAETVMILDELCEEVAER 276
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
M KE +T+TLK+K F+ TR++++ YI + +DI +A+ LL
Sbjct: 277 MAKEDKVAKTITLKIKFEDFKTITRSLSVNDYIRNYDDIRFYAAELL 323
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 142/259 (54%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 172 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 224
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKS ERT+ + LLYR +
Sbjct: 225 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKE 275
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 276 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDKTETIEKEVRQLIEE 335
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 336 IGKIEKGIRLLGVTVTNFQ 354
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|381401525|ref|ZP_09926424.1| DNA polymerase IV [Kingella kingae PYKK081]
gi|380833500|gb|EIC13369.1| DNA polymerase IV [Kingella kingae PYKK081]
Length = 338
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 15/247 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ + ++A+++R + + GLT SAG+APN+ LAK+ SD KPN
Sbjct: 92 SLDEAYLDVTQNKQQLPYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPN 150
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P++ + F+ LP+ K+ G+GK T ++ G T ++ Q A
Sbjct: 151 GQFVIQPHE---IEYFLRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELV 203
Query: 123 HSTADF-FLSVGLGLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
H F + L G P QA R R IS+E T S +K + L +++ L
Sbjct: 204 HWFGKFGYRLYDLARGVDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQ 263
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIG 238
MQ++ ++ TLTLKLK+ F+V TR+ T + E L A++ L A +P RLIG
Sbjct: 264 MQRKKMQAYTLTLKLKSTEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIG 321
Query: 239 LRVTQFN 245
L V+
Sbjct: 322 LGVSHLQ 328
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I + G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 142/259 (54%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 96 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 153
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 154 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 206
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKS ERT+ + LLYR +
Sbjct: 207 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKE 257
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 258 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEE 317
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 318 IGKIEKGIRLLGVTVTNFQ 336
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 93 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I + G+GK ++ ++ D GI ++ +K L +F
Sbjct: 152 GMTVI--DYQNVHDILMTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 209 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 267 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 326
Query: 239 LRV 241
+ V
Sbjct: 327 VTV 329
>gi|390958702|ref|YP_006422459.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
gi|390413620|gb|AFL89124.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
Length = 370
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 20/264 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + IA+ +R +Y+E LT SAG+APN+ LAK+ SD KPN
Sbjct: 105 SLDEAYLDVT-TNKTSLPTATLIAKSIRQQIYDELNLTASAGIAPNKFLAKIASDWRKPN 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P++ F+ +LP+ +I G+GKVTE + + GI ++ ++ A
Sbjct: 164 GQFVIQPHE---AEEFLRTLPVGRIPGVGKVTEARMAEA-GIKLVGDIY---AMSLATLE 216
Query: 123 HSTADFFLSVG-LGLGSTNTPQA--RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
+ L + L G + P R RK +S+E TF ED L L + +AE +
Sbjct: 217 QHFGSYSLRLHELARGIDHNPVVSNRVRKQVSAEDTFP--EDLPLTELEAHVCRLAEKVW 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--L 234
+ R +T+ LKLKT F TR++T + +S+ ED++ A L + +LP
Sbjct: 275 KASEGNARRAKTVVLKLKTKEFNSLTRSLTPRTPVSTCEDLISTALGLRDRVDLPAQQLY 334
Query: 235 RLIGLRVTQFN-EDKVRAPSDPTQ 257
RL+G+ +T F D A S+P +
Sbjct: 335 RLVGVGLTNFELRDDSVADSEPAE 358
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 93 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 152 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 209 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 267 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 326
Query: 239 LRV 241
+ V
Sbjct: 327 VTV 329
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI T +++ K L +F
Sbjct: 162 GMTVI--DYRNVHDILMALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAEGL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS DI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTHQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|384215689|ref|YP_005606855.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354954588|dbj|BAL07267.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 368
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 17/252 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD
Sbjct: 115 SLDEAYLDVTE-----NLQGIPLARDVALAIRAKIKEVTGLNASAGISYNKFLAKLASDH 169
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ+V+ + F+ +LP+ K GIG T + + G+ T +M +
Sbjct: 170 RKPNGQYVITPEMGP--AFVENLPVGKFHGIGPATGAKM-NALGLYTGLDMRNQSLEFMQ 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
++ S+ G+ + R RKS+ +E TFS + E +A++ ++ + + +
Sbjct: 227 TNFGKAGTYYYSISRGVDNREVRADRVRKSVGAENTFSTDLIEFEAMV-SEVQPLIDKVW 285
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLR 235
+++G RGRT+TLK+K A FE+ TR+ ++ +SS D+ + LL+ E LP +R
Sbjct: 286 RHCEEKGSRGRTVTLKVKFADFEIMTRSRSVPTAVSSRSDLERLVISLLENETPLPRPVR 345
Query: 236 LIGLRVTQFNED 247
L+G+ ++ + +
Sbjct: 346 LLGISLSSLHPE 357
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 20/212 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G +IA +R + E GLT SAG+A N+ LAK+ SD NKP+
Sbjct: 102 SLDEAYLDVTRNKQNLPYAG-DIARLIRADIRSETGLTASAGIAANKFLAKIASDWNKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCA 119
GQF LP + F+++LP+ KI G+GKVT + + G++T ++ +G L L
Sbjct: 161 GQFSLPPQKSE--AFLATLPLGKIPGVGKVTLQKMHRL-GLSTAGDLRRFSRGELANLFG 217
Query: 120 VFSHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+ + D L G+ N P R R IS+E T + + ALL L ++AE
Sbjct: 218 KWGYRLYD------LARGTDNRPVKPDRERLQISTETTLARDLPLSAALLC--LPQLAEE 269
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 207
L A +++ R R++TLKLKTASF + TR++T
Sbjct: 270 LWAQAERKKCRARSVTLKLKTASFRILTRSLT 301
>gi|152979117|ref|YP_001344746.1| DNA polymerase IV [Actinobacillus succinogenes 130Z]
gi|150840840|gb|ABR74811.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
Length = 357
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 137/257 (53%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + G S IA+E+R ++++E LT SAG+AP + LAK+ SD NKPN
Sbjct: 106 SLDEAYLDVTDSGKCCG-SATWIAQEIRQAIFDELHLTASAGIAPLKFLAKIASDQNKPN 164
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAV 120
GQFV+ P + V F+ +LP+RKI G+GKVT EH+L G+ TCE++ G S+L
Sbjct: 165 GQFVINPEN---VTEFVRTLPLRKIPGVGKVTSEHLLE--MGLYTCEDVQHAGLSVLLNR 219
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIA-E 174
F G+ R RKS+ ERT F++ + A+L +E+
Sbjct: 220 FG-KIGKRIWDFSHGIDEREVQPHRERKSVGVERTLSQNIFTLEQGMAVLEELCSELKRR 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRT---RAVTLQKYISSSEDILKHASVLLKAELP 231
+L A R R + +KLK F+V T AV Q+ E S + +
Sbjct: 279 ILRAKPDISLSRYRKMGVKLKFDDFQVTTLEKSAVEFQQ-----ETFATLLSQIWQRAEG 333
Query: 232 VSLRLIGLRVTQFNEDK 248
S+RL+GL VT E+K
Sbjct: 334 RSVRLVGLHVTIPEEEK 350
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 123 SLDEAYLDVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPN 181
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCA 119
GQFV+ P++ V F+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L
Sbjct: 182 GQFVIQPHE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLN 235
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAE 174
+F + G+ R RKSI ERT S + + ALL AE+
Sbjct: 236 IFGKMGKRIW-DFSHGIDDREIQAYRERKSIGVERTLSENIRHLEQGIALLDNLYAELIR 294
Query: 175 MLSADMQKEGLR-GRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPV 232
+ L R + +KLK F+V T T L + S + +L+ + +
Sbjct: 295 RIERSAPNVPLTVFRKIGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGK 351
Query: 233 SLRLIGLRVT 242
S+RL+GL VT
Sbjct: 352 SIRLVGLHVT 361
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGETAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 145/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
I A+ + A +Q G+T+ LK++ A F T+ VTL + + I + A +
Sbjct: 276 ISKNAKRVVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDT 335
Query: 229 --ELPVSLRLIGLRVTQFNEDKV 249
E V +RL+G+ +T EDK+
Sbjct: 336 LPEHTVGIRLLGVTMTNL-EDKM 357
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 13/244 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK +E I+ GI +++ QK L +F
Sbjct: 162 GMTVI--DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLI 237
K +T+T+K+KT FE ++ ++L+ I S DI + + +L AEL + +RLI
Sbjct: 277 NKLQKSAKTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPEMPIRLI 335
Query: 238 GLRV 241
G+ V
Sbjct: 336 GVTV 339
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 118/216 (54%), Gaps = 5/216 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R RG S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+
Sbjct: 103 SLDEAYLDVTGSQRFRG-SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +V+P + ++++ PIR++ G+G T L + GI ++L VF
Sbjct: 162 GLYVVPPEDGP--AYVAAQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQK 182
+ A G+ R RKSI +ERTF T D ++++LA + ++ ++
Sbjct: 219 NRAGTLHDAARGIDHRPVRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEH 278
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 218
L RT+TLKL+ A FE TR V+ ++ + DI
Sbjct: 279 HELVARTVTLKLRYADFESITRRVSPPGPVAQAADI 314
>gi|27375972|ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110]
gi|27349111|dbj|BAC46126.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 110]
Length = 366
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 132/251 (52%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTE-----NLQGIPLARDVALRIREKIKAETGLNASAGISYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLC 118
KPNGQFV+ + F+ +LP+ K GIG T + + GI T +M Q +
Sbjct: 168 RKPNGQFVISPEMGP--AFVEALPVGKFHGIGPATSAKM-NALGIFTGRDMRNQTLEFMN 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLS 177
A F + A ++ + G+ R RKSI +E TF D+ L L + + +
Sbjct: 225 ANFGKAGA-YYYWISRGVDERPVRANRIRKSIGAETTFQADLDEFDALVAALKPLVDKVW 283
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
+ G RGRT+TLK+K A FE+ TR+ + ++ +D+ + LL+ E+P+ +R
Sbjct: 284 RHCEATGNRGRTVTLKIKFADFEIITRSRSAPTPVAGRDDLERLTCGLLEVEMPLPKRVR 343
Query: 236 LIGLRVTQFNE 246
L+G+ ++ +
Sbjct: 344 LLGVSLSALQD 354
>gi|406040038|ref|ZP_11047393.1| DNA polymerase IV [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 351
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S +IA ++R +++ GLT SAGVAPN+ LAK+ SD NKP+
Sbjct: 100 SLDEAYLDVTENFKNLP-SATDIAIQIRQEIFKVTGLTASAGVAPNKFLAKIASDWNKPD 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+ + V FI LP++KI G+G+VT+ L+ + + T ++ + + ++L F
Sbjct: 159 GLCVIKPSQ--VQAFIQDLPLKKIPGVGRVTQEKLQQL-QLETLGDLQRIEENVLIHHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
FL G+ R R+ IS E TF + ++ L Y +AE + ++
Sbjct: 216 KYGKQLFLYAQ-GIDHRTVQAERERQQISKETTFDGDLYLNECLAY--WPPLAEKVWNNL 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSL--RLI 237
Q + L R +++KLK +F++ + + ++ I S ++L VLL + LP RLI
Sbjct: 273 QHKQLTARGVSIKLKLKNFQIYQHSKSFKRPIQSFAELLDILQVLLYEMHLPAEFQYRLI 332
Query: 238 GLRVTQF 244
GL V Q
Sbjct: 333 GLGVYQL 339
>gi|256829594|ref|YP_003158322.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578770|gb|ACU89906.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 412
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 8/256 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY DI+ R G IA L+ + LTCS G+APN+ LAK+ SD NKP
Sbjct: 109 ASVDEAYADISGTRRIFGPPE-NIARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKP 167
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
G F+ P D V F+ LP+ +I G+GK + LR + G+ T +L
Sbjct: 168 GGLTFIPPAD---VPAFLRDLPLGRIPGVGKQFQEELRRI-GVTTIPHVLAHPRTYWNEL 223
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
F G+ + KS S+E T T D+ LL R L AE + ++
Sbjct: 224 MGKRGAFLHDRACGIDDSPVVPGSDPKSCSAENTLDRDTLDRTLLERWLLIQAERIGREL 283
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGL 239
+ G +G T+TLK+K F TR+ TL + + +I + A +LL AE LP +RLIG
Sbjct: 284 RGLGKKGLTVTLKIKFQDFSSITRSRTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGT 343
Query: 240 RVTQFNEDKVRAPSDP 255
V+ F + P P
Sbjct: 344 GVSNFRFVQAELPLMP 359
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 142/255 (55%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F
Sbjct: 158 DGQFVIAPSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELHAHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 G-SFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHA 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRL 236
++ GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL
Sbjct: 272 TRRTERIGRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRL 331
Query: 237 IGLRVTQFNEDKVRA 251
+G+ ++ F++ +++A
Sbjct: 332 VGVGLSGFSDPELQA 346
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 93 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 152 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 209 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 267 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 326
Query: 239 LRV 241
+ V
Sbjct: 327 VTV 329
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 142/255 (55%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F
Sbjct: 158 DGQFVIAPSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 G-SFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHA 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRL 236
++ GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL
Sbjct: 272 TRRTERIGRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRL 331
Query: 237 IGLRVTQFNEDKVRA 251
+G+ ++ F++ +++A
Sbjct: 332 VGVGLSGFSDPELQA 346
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|302346217|ref|YP_003814515.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
gi|302150325|gb|ADK96586.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
Length = 366
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 136/248 (54%), Gaps = 19/248 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD++E ++GI ++IA+E++ ++E LT SAG++ N+LLAK+ SD+ KP
Sbjct: 100 SLDEAFLDVSE--NKKGIELAVDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
NG F + DR + FI LPI K+ G+G T + + G+ T E++ + L VF
Sbjct: 158 NGIFTVHPDR--ALDFIGKLPIEKLWGVGPKTAERMHSM-GVFTGEQLREISREHLVQVF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSA 178
+ + G+ + A RKS+ ERTF E K ++ +L I L
Sbjct: 215 G-KMGNVYYDFSRGIDNRPVIVAYERKSVGCERTFLEDLHVESKIII--ELYHITLELVE 271
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSL 234
++ + +GRTLTLKLK + TR++T K + + +DIL A LLK P+
Sbjct: 272 RIKTKDFKGRTLTLKLKWDATTQITRSLTQDKILRTKDDILPLAKQLLKDTDYHNRPI-- 329
Query: 235 RLIGLRVT 242
RL+GL V+
Sbjct: 330 RLMGLSVS 337
>gi|408793588|ref|ZP_11205194.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408462092|gb|EKJ85821.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 358
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 132/252 (52%), Gaps = 13/252 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + ++ IA+E+R +++ GLTCSAGVA N+ LAK+ S+ NKPN
Sbjct: 101 SLDEAYLDVTSNKLQIPLAST-IAKEIRKKIFDRTGLTCSAGVAQNKFLAKMASEKNKPN 159
Query: 64 GQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G + VLP + F+ +P+ GIGK T L + E + S L F
Sbjct: 160 GLYVVLPGEE---EKFLDDIPLYSFFGIGKKTYERLSQLGYTKGSELRKAEESFLVGEFG 216
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
A F+ + GL R KSI E TFS +ED A L L +++ L M
Sbjct: 217 KMGAVFY-RMARGLDDREVIPFRDPKSIGVETTFSHDSEDFAYLLLTLENLSKELELRMG 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL------KAELPVSLR 235
++ +G+TLTLK+K F V+ ++++ + ++++ + +S LL E +R
Sbjct: 276 RKNKQGKTLTLKIKFEDFTVKQKSISSESVFYLADNLFQQSSNLLANVWKENTEPMKKIR 335
Query: 236 LIGLRVTQFNED 247
L+G+ VT F+ D
Sbjct: 336 LLGISVTNFSSD 347
>gi|333375949|ref|ZP_08467746.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
gi|332969247|gb|EGK08275.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
Length = 363
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 15/247 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ + ++A+++R + + GLT SAG+APN+ LAK+ SD KPN
Sbjct: 117 SLDEAYLDVTQNKQQLPYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPN 175
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P++ + F+ LP+ K+ G+GK T ++ G T ++ Q A
Sbjct: 176 GQFVIQPHE---IEYFLRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELV 228
Query: 123 HSTADF-FLSVGLGLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
H F + L G P QA R R IS+E T S +K + L +++ L
Sbjct: 229 HWFGKFGYRLYDLARGVDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQ 288
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIG 238
MQ++ ++ TLTLKLK+ F+V TR+ T + E L A++ L A +P RLIG
Sbjct: 289 MQRKKMQAYTLTLKLKSTEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIG 346
Query: 239 LRVTQFN 245
L V+
Sbjct: 347 LGVSHLQ 353
>gi|432331934|ref|YP_007250077.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
gi|432138643|gb|AGB03570.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
Length = 385
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 24/265 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIE--IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
S+DEA+L+++ + G G AEE+R +++ GL+CS G+AP+R++AK+ SD K
Sbjct: 133 SIDEAFLNVSSL----GDFGTAQAFAEEVRACIHKRLGLSCSIGIAPSRIIAKIASDFRK 188
Query: 62 PNGQFVL--PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 118
P G ++ P R F+S LP+R+I G+GK E +L ++ GI T ++ Q+ +L
Sbjct: 189 PGGLTIVTPPTAR----DFLSPLPVRRIPGVGKKAEGMLFEM-GIRTIGDLAQQDVQVLI 243
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFR-KSISSERTFSV-TEDKALLYRKLAEIAEML 176
F S A F + G+ S+ P+ KSIS E TF + T+D+ L + E+ +
Sbjct: 244 GRFGRS-AIFLHQLACGIDSSGVPEGSGETKSISRETTFEIDTDDREHLLSVIDELIRCV 302
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LR 235
A + EGLR RTLTLK++ + F R+R + + + A L E +R
Sbjct: 303 GASLAAEGLRFRTLTLKIRYSGFITRSRGRSFSHGTDNPAAMKSLAHSLFCEEYRGGKVR 362
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTL 260
LIG+R++ F + D +Q TL
Sbjct: 363 LIGIRLSSFEK------RDASQATL 381
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIAEE+RT + + LT SAGV+ N+ LAK+ SD KP+
Sbjct: 124 SLDEAYLDVTENLKGLRLA-TEIAEEIRTRIKAKTHLTASAGVSYNKFLAKMASDQRKPD 182
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ R F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 183 GLFVITPKRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 239
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 240 KSGPYFYWIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 299
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G+
Sbjct: 300 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVT 359
Query: 241 VTQFN 245
++ +
Sbjct: 360 LSSLD 364
>gi|163841242|ref|YP_001625647.1| DNA polymerase IV [Renibacterium salmoninarum ATCC 33209]
gi|162954718|gb|ABY24233.1| DNA polymerase IV [Renibacterium salmoninarum ATCC 33209]
Length = 424
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 7/240 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+ R G S +EIA +RT V E G+T S G+A + +AK+ S +KP+
Sbjct: 125 SVDEAFLDVAGSRRRLG-SALEIARLIRTRVRNELGITASVGIASTKFVAKIASTQSKPD 183
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G ++P++ + F+ +LP + + G+G T +L D+ GI+T ++ +
Sbjct: 184 GLLLIPHED--TVAFLHTLPAQALWGVGAKTRKVLADM-GIHTVAQIANTPVHMLRRVLG 240
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+T D + G+ R KSI SE TF+ T D +L+R+L +A ++
Sbjct: 241 ATGDHVYRLSWGIDPRAVTPVRIDKSIGSEETFAEDTRDDEILHRELLRLAHRTGQRLRS 300
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLR 240
G RT+ +K++ F V TR+ TL ++S++ + + L +A + P+++RLIGLR
Sbjct: 301 AGYLARTVAIKIRFEDFSVITRSRTLSVPVNSAQLLYQEGLKLFQALGKRPMAVRLIGLR 360
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 13/244 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK +E I+ GI +++ QK L +F
Sbjct: 162 GMTVI--DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLI 237
K +T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLI
Sbjct: 277 NKLQKSAKTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLI 335
Query: 238 GLRV 241
G+ V
Sbjct: 336 GVTV 339
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|325578163|ref|ZP_08148298.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
gi|325159899|gb|EGC72028.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
Length = 344
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 93 SLDEAYLDVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPN 151
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCA 119
GQFV+ P++ V F+ +LP++KI G+GKVT E +L+ G+ TCE++ QK S+L
Sbjct: 152 GQFVIQPHE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCEDV-QKLDQSILLN 205
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAE 174
+F + G+ R RKSI ERT S + + ALL AE+
Sbjct: 206 IFGKMGKRIW-DFSHGIDDREIQAYRERKSIGVERTLSKNIRHLEQGIALLDNLYAELIR 264
Query: 175 MLSADMQKEGLR-GRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPV 232
+ L R + +KLK F+V T T L + S + +L+ + +
Sbjct: 265 RIERSAPNVPLTVFRKIGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGK 321
Query: 233 SLRLIGLRVT 242
S+RL+GL VT
Sbjct: 322 SIRLVGLHVT 331
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R ++++E LT SAG+AP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +LP+ KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VSEFIKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T ++ + AL LY +L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYDELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+++++ R + +KLK F+V T T L + S + +L + K S
Sbjct: 279 RINSNIPLSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---S 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 84 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 142
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 143 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 199
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 200 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 257
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 258 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 317
Query: 239 LRV 241
+ V
Sbjct: 318 VTV 320
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 93 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 152 GMTVI--DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 209 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 267 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 326
Query: 239 LRV 241
+ V
Sbjct: 327 VTV 329
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 13/244 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK +E I+ GI +++ QK L +F
Sbjct: 162 GMTVI--DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLI 237
K +T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLI
Sbjct: 277 NKLQKSAKTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLI 335
Query: 238 GLRV 241
G+ V
Sbjct: 336 GVTV 339
>gi|420143241|ref|ZP_14650742.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
gi|391856760|gb|EIT67296.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
Length = 365
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 142/260 (54%), Gaps = 22/260 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA- 119
P+G +LP A F++ LP+ K G+GK T L ++ GI T E+ LL A
Sbjct: 171 PHGLTVILPE---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAE 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + FL G+ +R RKS+ ERT+S LLY ++L ++
Sbjct: 227 RFGVYGWNLFLKAN-GIHHAPVITSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
E +S ++++ L G T+ LKL+ + F+ T+ L + I+ + + A LL+ +
Sbjct: 281 ERVSTNLKRHQLLGDTVVLKLRYSDFKTITKRKKLPEKINEATALAHVAQDLLEEVDYDE 340
Query: 231 PVSLRLIGLRVTQFNEDKVR 250
+ +RL+G+ +T F +++R
Sbjct: 341 TLGVRLLGVTLTGFGAEELR 360
>gi|149185736|ref|ZP_01864052.1| DNA polymerase IV [Erythrobacter sp. SD-21]
gi|148830956|gb|EDL49391.1| DNA polymerase IV [Erythrobacter sp. SD-21]
Length = 370
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKP
Sbjct: 114 SLDEAYLDVTE--DKLGIGSATRIAELIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKP 171
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V+ A F+ SLP+R+ G+G K E + D GI T E+ K
Sbjct: 172 DGMCVIRPGEGA--DFVQSLPVRRFHGVGPKGAEKM--DRLGIQTGAELAAKDIEWLRAH 227
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S AD+ G+ +R RKS+ ERTFS + L L +I +++ +
Sbjct: 228 FGSFADYLYRAARGIDLRPVRSSRIRKSVGGERTFSRDLSSGSELRETLEDIIDIVWGYI 287
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIG 238
++ +GRT+TLK+K F++ +RA T+ + I+ + LL+ LP+ +RL+G
Sbjct: 288 ERAEAKGRTVTLKMKYIDFQIFSRAKTVDQPITDRAQFEALSRQLLEEVLPLPMPIRLMG 347
Query: 239 LRVTQFNEDK 248
L +++ K
Sbjct: 348 LTLSKLEGGK 357
>gi|374373625|ref|ZP_09631285.1| DNA polymerase IV [Niabella soli DSM 19437]
gi|373234598|gb|EHP54391.1| DNA polymerase IV [Niabella soli DSM 19437]
Length = 348
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 142/247 (57%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + G S ++IA +++ ++ EE LT SAGV+ N+ +AK+ SD+NKP+
Sbjct: 94 SLDEAYLDVTKDKQNIG-SALDIARQIKQAIKEELQLTASAGVSINKFVAKIASDMNKPD 152
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G F+ P+ + F+ LP+ K G+GKVT ++ G++T ++ + S + F
Sbjct: 153 GLTFIGPS---RIEAFMEQLPVGKFHGVGKVTAAKMK-TMGLHTGADLKKLSESEITKQF 208
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
++L V G+ + R KS+S E T+ S K ++ +L +A L+ +
Sbjct: 209 GKPGKFYYLIV-RGIDNREVQPHRETKSVSVEDTYQSDLTTKETMWTELETLAIRLADRL 267
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLI 237
Q+ GL+GRT+T+K K F + TR+++L + ++ E L A+ L + PV +RL+
Sbjct: 268 QRHGLKGRTVTVKFKFHDFTIITRSLSLPELVNDQES-LSAATRTLLDKAPVDEKKVRLL 326
Query: 238 GLRVTQF 244
GL V+ F
Sbjct: 327 GLGVSNF 333
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVV--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKP
Sbjct: 103 SLDEAYLDVTH--NKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKP 160
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQ + + V++F+ +LPI + GIG VT + + + GI +++ +K
Sbjct: 161 NGQKTIHPTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQ 181
+ + G+ + R KS+ E T+ D + ++L +A+ L ++
Sbjct: 218 GKMGGHYYDIVRGIHRSEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 225
K+ ++G++LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 278 KKKVKGKSLTLKIKYKDFSLFTRSKTQNLYFETEEEMYQTARFL 321
>gi|398825840|ref|ZP_10584115.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
gi|398222485|gb|EJN08859.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
Length = 366
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTE-----NLQGIPLARDVALRIRDKIKAETGLNASAGISYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLC 118
KPNGQ+V+ + F+ +LP+ K GIG T + + G+ T ++ Q +
Sbjct: 168 RKPNGQYVISPEMGP--AFVETLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLEFMN 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLS 177
A F S A ++ + G+ R RKSI +E TFS D L +L + + +
Sbjct: 225 ANFGKSGA-YYYWISRGVDERPVRANRIRKSIGAETTFSTDLDTFDALAAELRPLVDKVW 283
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G RGRT+TLK+K A FE+ TR+ ++ ++ +++ + A LL+ E+P+ S+R
Sbjct: 284 RHCETSGNRGRTVTLKVKFADFEIVTRSRSVPAPVAGRDELERLACGLLEVEMPLPKSVR 343
Query: 236 LIGLRVTQFNE 246
L+G+ ++ +
Sbjct: 344 LLGVSLSSLQD 354
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 16/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++ R G + + ++R+ V E G+TCS GVA + +AK+ S + KP+
Sbjct: 116 SLDEAFLDVSGALRRLGATPASLGAQIRSRVAAEHGITCSVGVAKVKFVAKLASGMAKPD 175
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ------KGSLL 117
G V+P + F+ LP+ + G+G TE LR G+ T ++ K SL
Sbjct: 176 GMVVVPAAE--TLAFLHPLPVSALWGVGARTEEHLRR-LGLATIADVAAFPPERLKKSLG 232
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEML 176
A H + G+ + KSI +E TF V D+A L +L +AE +
Sbjct: 233 TAAGEH-----LYRLAHGVDERSVVAESAEKSIGAEHTFDVDRHDRASLGLELLRLAERV 287
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLR 235
A ++ GLRGRT+++K++ A F TRA TL + +I A LL P ++R
Sbjct: 288 GATLRGRGLRGRTVSIKVRFADFRTITRARTLVSATDVAREIHAVAVALLAEHAPTGAVR 347
Query: 236 LIGLRV 241
LIG+RV
Sbjct: 348 LIGVRV 353
>gi|281424755|ref|ZP_06255668.1| DNA-directed DNA polymerase [Prevotella oris F0302]
gi|281401125|gb|EFB31956.1| DNA-directed DNA polymerase [Prevotella oris F0302]
Length = 366
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 143/259 (55%), Gaps = 19/259 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T ++GIS ++IA+E++ + +E GLT SAG++ N+LLAK+ SD KP
Sbjct: 100 SLDEAFLDVT--INKKGISLAVDIAKEIKQRIKDELGLTASAGISYNKLLAKIASDYRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ M F++ LP+ + G+G T + + N + L+ SL L V
Sbjct: 158 DGLCTIHPDK--AMNFVAKLPVEDLWGVGPKTARRMHRMGIFNALQ--LRACSLEHLKMV 213
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LS 177
F S F+ + G+ R RKS+ E+TF ED +L L E+ + L+
Sbjct: 214 FGKSGPAFY-NYARGIDERPVVVERTRKSVGCEQTF--LEDISLPSALLIELYHLVLELT 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELPVSL 234
++K G+TLTLK+K A F+ TR++T +K + + +DIL A LL + ++
Sbjct: 271 TRIEKGNFEGKTLTLKIKYADFKQITRSITGRKLLKTKDDILPLAKRLLHLVHYDNAHAI 330
Query: 235 RLIGLRVTQ-FNEDKVRAP 252
RL+GL V+ ED AP
Sbjct: 331 RLMGLSVSNPSGEDGDAAP 349
>gi|347522347|ref|YP_004779918.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
gi|343180915|dbj|BAK59254.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
Length = 365
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA- 119
P G +LP A F++ LP+ K G+GK T L ++ GI T E+ LL A
Sbjct: 171 PYGLTVILPE---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAE 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + FL G+ +R RKS+ ERT+S LLY ++L ++
Sbjct: 227 RFGVYGWNLFLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
E +S ++++ L G T+ LKL+ + F+ T+ L + I+ + + A LL+ +
Sbjct: 281 ERVSTNLKRHQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEIDYDE 340
Query: 231 PVSLRLIGLRVTQFNEDKVR 250
+ +RL+G+ +T F +++R
Sbjct: 341 TLGVRLLGVTLTGFGAEELR 360
>gi|373460929|ref|ZP_09552678.1| hypothetical protein HMPREF9944_00942 [Prevotella maculosa OT 289]
gi|371954418|gb|EHO72230.1| hypothetical protein HMPREF9944_00942 [Prevotella maculosa OT 289]
Length = 361
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 18/253 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T ++G ++IA+E++ + E LT SAG++ N+LLAK+ SD KP
Sbjct: 100 SLDEAFLDVT--VNKKGFELAVDIAKEIKQRIKSELNLTASAGISYNKLLAKIASDYRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ + F++ LP+ + G+GK T + GI E+ L+ SL L +
Sbjct: 158 DGICTIHPDK--ALEFVAKLPVEDLWGVGKKTAQRMH-YMGIFNGEQ-LRSCSLQHLITM 213
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LS 177
F + F+ + G+ R RKS+ E TF ED +L L E+ + LS
Sbjct: 214 FGKAGPSFY-NYARGIDEREVITDRTRKSVGCEHTF--VEDLSLPSAILIELYHLVVELS 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELPVSL 234
+ K G+TLTLK+K F+ TR++T+Q + S EDIL A LL + + ++
Sbjct: 271 ERIHKGNFEGKTLTLKIKYGDFKQITRSITVQNVLKSKEDILPLAKRLLHLVRYDNAHTI 330
Query: 235 RLIGLRVTQFNED 247
RL+GL V+ +D
Sbjct: 331 RLMGLSVSNPGDD 343
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 136/252 (53%), Gaps = 19/252 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE E + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+
Sbjct: 100 SLDEAYLDVTEPKGELA-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPD 158
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P+ V F++ LP+ K+ G+GKV + L ++ GI T ++ G +
Sbjct: 159 GQFVIRPHQ---VDAFLTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLRTHGEVELEARF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLS 177
S G+ + +SISSE TF+ ED AL R LAE + +
Sbjct: 215 GSFGLRLYQRARGIDQRPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWT 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--L 234
A + E + RT+ LKLKTA F + TR+ T ++ S + + A L + +LP S
Sbjct: 271 ATRRTERI-ARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRY 329
Query: 235 RLIGLRVTQFNE 246
RL+G+ + F+E
Sbjct: 330 RLVGVGLAGFHE 341
>gi|347530139|ref|YP_004836887.1| DNA polymerase IV [Sphingobium sp. SYK-6]
gi|345138821|dbj|BAK68430.1| DNA polymerase IV [Sphingobium sp. SYK-6]
Length = 366
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 107 SLDEAYLDVTQ--NKLGIVSATYVAQEIRRLIREETGLTASAGVSCNKLIAKLASDQNKP 164
Query: 63 NGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V P + A F++++P+ +I GIG VT + GI++ ++ K L A+
Sbjct: 165 DGLCIVKPEEAEA---FMAAMPVGRIHGIGPVTARRM-ATLGIHSGADL--KAWPLPALQ 218
Query: 122 SH--STADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSA 178
H +A F+ G+ RKSIS E TF S + L +L +IA L
Sbjct: 219 RHFGKSATFYHDAARGIDDRPVRDRETRKSISVEDTFESDIGAEGQLLAELEKIAARLWT 278
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RL 236
+ GRT+TLK+K F + TR+ TL ++ED+ + LL+A+LP+ + RL
Sbjct: 279 RVIAARALGRTVTLKIKLGDFRILTRSRTLPAPPVNAEDLYAIGTDLLRAQLPLPIGARL 338
Query: 237 IGL 239
+GL
Sbjct: 339 LGL 341
>gi|385833731|ref|YP_005871506.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
gi|343182884|dbj|BAK61222.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
Length = 365
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA- 119
P G +LP A F++ LP+ K G+GK T L ++ GI T E+ LL A
Sbjct: 171 PYGLTVILPE---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAE 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + FL G+ +R RKS+ ERT+S LLY ++L ++
Sbjct: 227 RFGVYGWNLFLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
E +S ++++ L G T+ LKL+ + F+ T+ L + I+ + + A LL+ +
Sbjct: 281 ERVSTNLKRHQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEVDYDE 340
Query: 231 PVSLRLIGLRVTQFNEDKVR 250
+ +RL+G+ +T F +++R
Sbjct: 341 TLGVRLLGVTLTGFGAEELR 360
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ + +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDMNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 136/249 (54%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T RG+ + AEE+R + E GLT SAG++ N+ LAK+ SD KP
Sbjct: 105 SLDEAYLDVT--ANRRGLPTASATAEEIRDRILEATGLTASAGISYNKFLAKLASDQRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQFV+P R F+ LP+++ G+G VT E + R GI T ++ +
Sbjct: 163 NGQFVVPPGRGE--AFVQDLPVKRFHGVGPVTAEKMTR--LGIETGADLRHQSLAFLQHH 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 179
+ ++ ++ G R RKS SE TF+ + E +A+ + E+A+ + A
Sbjct: 219 FGKSGPWYYAIARGEDHRPVNPDRERKSSGSETTFARDLVEPEAI-EAGVEEMADEVWAW 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
+K G GRT+T+K+K A F+ TR+ + + ++S + + + +L ++ P + +RL+
Sbjct: 278 CEKAGSLGRTVTVKVKWADFQQSTRSRSFAEPVASKARLREISRLLARSLYPPTKGVRLV 337
Query: 238 GLRVTQFNE 246
G+ ++ +
Sbjct: 338 GVTISNLEK 346
>gi|404370742|ref|ZP_10976062.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
gi|226913130|gb|EEH98331.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
Length = 348
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 10/249 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLDIT + SG+E A ++ V +E GLT S G++ N+ LAK+ SD NKPN
Sbjct: 101 SIDEAYLDITHSNFK---SGMEAARYIKNRVLKEIGLTISVGISYNKFLAKLASDWNKPN 157
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G ++ + + + P+ +I G+GK + L ++ GI T +++ + S
Sbjct: 158 GIKIITKE--MIPHILLPFPVSRIHGVGKKSVEKLNNI-GIFTVKDLYEMPKSFYIEYLG 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ + R RKS ERT S T DK L L + + +S +
Sbjct: 215 KYGLEIYDRIR-GIDNREVEVERDRKSYGKERTLKSDTHDKEELMLYLKDFSNEISGYLI 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLR 240
+ L G+T+T+K KT+ F+ TR+ TL Y ++ EDI + +L E+ +RLIG+
Sbjct: 274 RGNLEGKTITVKYKTSDFQNHTRSKTLNYYTNNFEDIYRTCEEILDNEEINEEVRLIGVT 333
Query: 241 VTQFNEDKV 249
V+ F E+KV
Sbjct: 334 VSSFKENKV 342
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKP
Sbjct: 91 SLDEAYLDVTH--NKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKP 148
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQ + + V++F+ +LPI + GIG VT + + + GI +++ +K
Sbjct: 149 NGQKTIHPTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHF 205
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQ 181
+ + G+ + R KS+ E T+ D + ++L +A+ L ++
Sbjct: 206 GKMGGHYYDIVRGIHRSEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIE 265
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 225
K+ ++G++LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 266 KKKVKGKSLTLKIKYKDFSLFTRSKTQNLYFETEEEMYQTARFL 309
>gi|404255732|ref|ZP_10959700.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 348
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 133/254 (52%), Gaps = 17/254 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ RG+ + A+E+R + EE GLT SAG++ N+ LAK+ SD KP
Sbjct: 92 SLDEAYLDVTD--NRRGLPTAWSTAKEIRARILEETGLTASAGISFNKFLAKLASDHRKP 149
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQF + D A ++ +LP+ + G+G VT ++ + GI T ++ K
Sbjct: 150 NGQFAVTPDMGA--DWVQTLPVARFHGVGPVTAAKMQRL-GIETGSDLRAKPLAFLQEHF 206
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD--- 179
++AD++ + G+ R RKS SE TF D+ L E + AD
Sbjct: 207 GNSADWYFRIARGIDDRPVNPNRQRKSSGSEITF----DRDLTAAAEIEAGVLGQADDVW 262
Query: 180 --MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G GRT+T+K+K A F++ TR+ T + + + + L+++ LP +R
Sbjct: 263 QWCARAGAFGRTVTVKIKYADFQMITRSRTRPTAVKTQTGLRDTSLRLVRSVLPTEKGIR 322
Query: 236 LIGLRVTQFNEDKV 249
L+G+ V+ F+ V
Sbjct: 323 LVGVTVSNFDRSVV 336
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + G+S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGLSSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G +LP + M V+ +SLPI K G+GK T L D+ G+ T +++L + L
Sbjct: 172 HGLTLILPEEAMGVL---ASLPIEKFHGVGKKTVERLHDM-GVYTGQDLLDVPEMVLIDT 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEI 172
F D + G +N+P R RKSI ERT+ + LLYR +L +
Sbjct: 228 FGRFGFDLYRK---ARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELTSL 279
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AEL 230
+ ++A +++ +GRT+ LK++ F T+ +L +Y + I K L++ ++
Sbjct: 280 CQRVAASLERNEKKGRTIVLKVRYGDFSTLTKRHSLDEYTDQLDIIEKVVRQLIEEIGQV 339
Query: 231 PVSLRLIGLRVTQFN 245
+RL+G+ VT F
Sbjct: 340 EKGIRLLGVTVTNFQ 354
>gi|148263204|ref|YP_001229910.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
gi|146396704|gb|ABQ25337.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
Length = 408
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 25/262 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LDIT R G S IA ++ + GLTCS G+APN+LLAK+ S++ KP+
Sbjct: 102 SIDEAFLDITGSLRLFG-SASRIAHLIKARIRHRFGLTCSIGIAPNKLLAKLASEMKKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ +R+A + + +LPIR++ GIG+ TE L + GI TC E+ G + +
Sbjct: 161 GLTVIHQERVAAI--LENLPIRELCGIGRQTERTL-TLLGIRTCGEL---GRFPVHILTR 214
Query: 124 STADFFLSVG-----LGLGSTNTP-----QARFRKSISSERTFS--VTEDKALLYRKLAE 171
F VG +GLG + P A KS+ T +TE +L L
Sbjct: 215 R----FGVVGEKLHRMGLGIDDAPVVPAEAAPDVKSVGHSTTLERDITERGEILA-ILLR 269
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAEL 230
+AEM+ +K + G+T+TL ++ A F + T Y + S+DI + A +LL +L
Sbjct: 270 LAEMVGRRARKHAVAGKTVTLTIRYADFSTFSLQATAGNYTNQSDDIYQAAVLLLDSVDL 329
Query: 231 PVSLRLIGLRVTQFNEDKVRAP 252
+RL+G+R+T + P
Sbjct: 330 RQPVRLLGVRITNLRHHTEQLP 351
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T E G S IEIA +++ ++ +E LT SAGV+ N+ +AK+ SDINKP+
Sbjct: 108 SLDEAYLDVTHDKLEIG-SAIEIAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPD 166
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAV 120
G F+ P+ + +F+ SL + K GIG+VT ++ ++F +++ ++ LL
Sbjct: 167 GLTFIGPS---KIESFMESLAVEKFHGIGRVTAEKMKRMNLFTGADLKKLTEEQLLLHF- 222
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
F+ + G+ R KS+ +E TF D + +L +IA+ ++
Sbjct: 223 --GKPGKFYYKIVRGIDDREVQPNRVTKSVGAEDTFPYDLTDLEEMNVELDKIAKTVADR 280
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLI 237
+Q+ L+GRTLTLK+K + F+ TR + I+ + I + A LL P +RL+
Sbjct: 281 LQRYQLKGRTLTLKIKYSDFKQITRNQSFLHEINDLQTIAQTAKELLLKTSPEDKKIRLL 340
Query: 238 GLRVTQFNE 246
G+ ++ FNE
Sbjct: 341 GITLSNFNE 349
>gi|337280537|ref|YP_004620009.1| DNA polymerase IV [Ramlibacter tataouinensis TTB310]
gi|334731614|gb|AEG93990.1| Candidate DNA polymerase IV [Ramlibacter tataouinensis TTB310]
Length = 409
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 11/259 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D TEV + G +A ++ +++E LTCS GVAPN+L+AK+ S+ NKPN
Sbjct: 134 GIDEVYIDFTEVPGGQREGGRVLARLIQKAIFERTALTCSIGVAPNKLIAKMASEFNKPN 193
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ + V I LP+RKI GIG E L + + ++ L F
Sbjct: 194 GISVVHGE--DVQRLIWPLPVRKINGIGPKAEAKLHRLGLTAIGDIAAREREWLVGHFGK 251
Query: 124 STADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
S + G T + + + ER D+A L ++ E ++ D
Sbjct: 252 SNGAWLHDAAWGRDDRPVVTESEPVSMSRETTFERDLHAVRDRAELGAIFTDLCERVAGD 311
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIG 238
+Q++G GRT+ +KL+ F + TR TL Y + + I + A LK +L LRL+G
Sbjct: 312 LQRKGYVGRTIGIKLRYDDFRIATRDQTLPLYTADARTIRQAAGQCLKRVDLTRRLRLLG 371
Query: 239 LRVTQFNEDKVRAPSDPTQ 257
+RV + RA S P Q
Sbjct: 372 VRVGKL----ARADSAPNQ 386
>gi|388567220|ref|ZP_10153657.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
gi|388265603|gb|EIK91156.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
Length = 423
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 129/261 (49%), Gaps = 11/261 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ S+++ GLTCS GVAPN+LLAK+ S+ NKPN
Sbjct: 142 GVDEVYIDFTDVPGGQREGGRVLARLIQKSIFDATGLTCSIGVAPNKLLAKMASEFNKPN 201
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVF 121
G V+P D + I LP RK+ G+G + L+ GI+T ++ + L A F
Sbjct: 202 GISIVMPED---LQRLIWPLPCRKVNGVGPKADARLQS-HGIHTIGDLAAREPDWLVANF 257
Query: 122 SHSTADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
S + V G T + + + ER D+A L L E+ E ++
Sbjct: 258 GKSYGAWLHEVAWGRDDRPVVTESEPVGMSRETTFERDLHAVHDRAELGAILTELCEQVA 317
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
+D+Q++G RT+ +KL F TR +TL + + + I + A LK +L RL
Sbjct: 318 SDLQRKGYLARTIGIKLTYVGFTKVTRDLTLDEPTADAATIRRAAGQCLKRVDLTRRFRL 377
Query: 237 IGLRVTQFNEDKVRAPSDPTQ 257
+G+R ++ + P Q
Sbjct: 378 LGVRSSKLVKPGTHEAHGPDQ 398
>gi|375088530|ref|ZP_09734868.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
gi|374561495|gb|EHR32834.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
Length = 395
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 15/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA++L+ +YE+ LTCSAGV+ N+ +AK+ SD KP+
Sbjct: 138 SLDEAYLDVTN-NKKSMPSATMIAQQLQKIIYEQTQLTCSAGVSYNKFIAKIASDYQKPS 196
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+ + F+ LPI K G+G+ T + I T E++ Q+ L F
Sbjct: 197 GLTVVTP--ASAHHFLMQLPIEKFFGVGEKTLEKMH-ALNIYTGEDLYQQTLDDLMHRFG 253
Query: 123 HSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 178
+ V G N+P R RKS+ E T++ +T D ++ ++L +++ A
Sbjct: 254 KMGYSLYHKVR---GIDNSPVVADRTRKSVGKESTYAHVITHDDEVI-QQLRRLSQQTFA 309
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
++K L G+T+ LK + ++F T+ TL YI S+ED+ AS L E V +RL
Sbjct: 310 SLEKHRLHGKTVVLKYRYSNFSTHTKRRTLFNYIHSAEDLFNIASDLWYEEGDVEQGVRL 369
Query: 237 IGLRVTQFNE 246
+G+ VT N+
Sbjct: 370 LGVTVTNLNK 379
>gi|357060135|ref|ZP_09120909.1| DNA polymerase IV [Alloprevotella rava F0323]
gi|355377025|gb|EHG24265.1| DNA polymerase IV [Alloprevotella rava F0323]
Length = 371
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEA+LD+TE ++G+ ++IA E++ + EE LT SAGV+ +LLAK+ SD KP
Sbjct: 103 SVDEAFLDVTE--NKKGVELAVDIAREIKNRIQEELQLTASAGVSYCKLLAKIASDYRKP 160
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ + FI+ LP+ K+ G+G T L + GI T E+ L++ SL L
Sbjct: 161 DGLCTIHPDK--ALRFIAHLPVTKLWGVGPKTAERLHQM-GIYTGEQ-LREYSLHSLTQA 216
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
F F + G+ R KS+ E TF + +A + +L + L
Sbjct: 217 FG-KMGQVFYNFARGIDERPVVTTREAKSVGCEHTFEKDLQTQAPVIVELYHVTLKLVER 275
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIG 238
++K GRTLTLK+K A F TR++T Q+ + + + IL A LL K + +RL+G
Sbjct: 276 IKKHKFEGRTLTLKVKYADFTQITRSLTQQELLRTKKQILPLAKQLLAKTDTSRPIRLLG 335
Query: 239 LRVTQFNEDKVRAP 252
L V+ E+ V+ P
Sbjct: 336 LSVSSPKEENVKKP 349
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
+LDEAYLD+TE G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KP
Sbjct: 106 ALDEAYLDVTENLL--GLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDHRKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
N FV+ M F+++LPI + G+G VTE ++ + GI T ++ L F
Sbjct: 164 NALFVI-TPAMG-PDFVAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWTPERLRETF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSA 178
+ A ++ +V G+ R RKSI +E TFS +D A +L +LA + + + A
Sbjct: 221 GSAGA-YYHAVARGIDGRPVRAHRVRKSIGAETTFS--DDTAAFEVLAARLAPLFDKVWA 277
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+G+R RT+TLKLK + F TRA +L ++ + + LL P+ S RL
Sbjct: 278 AADAKGMRARTVTLKLKFSDFAQVTRARSLPVPVADRAGLERIGLDLLAGLFPLRRSARL 337
Query: 237 IGLRVTQFNEDKVRAPSDPTQKTLT 261
IG+ ++ F +D AP P Q L
Sbjct: 338 IGVSLSGFAQD---APEAPLQLGLA 359
>gi|319943512|ref|ZP_08017794.1| DNA-directed DNA polymerase [Lautropia mirabilis ATCC 51599]
gi|319743327|gb|EFV95732.1| DNA-directed DNA polymerase [Lautropia mirabilis ATCC 51599]
Length = 414
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 9/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE ++D+T+V + G +A L+ + E GL+CS GVAPN+L+AK+ SD++KP+
Sbjct: 146 GIDEVFIDLTKVAGVQEDGGRALATRLQARIQAETGLSCSIGVAPNKLIAKMASDLDKPH 205
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G + P D + T I LP R+I GIG T+ L+ + + + + L F
Sbjct: 206 GITIIRPED---LQTRIWPLPCRRINGIGPKTDERLQKLGVLTIAQLAACDTAWLVEHFG 262
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
T + G +IS E TF D+A L +AE +
Sbjct: 263 TRTGQWLHDAAWGRDDRPVANRAEPVTISRETTFERDLHAVHDRAELAAIFTRLAEQTAQ 322
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLI 237
D+Q++G RGRT+ +KL+ A F TR +T + + DI + A LK +L RL+
Sbjct: 323 DLQRKGYRGRTVGIKLRYADFRTVTRELTTESPTQDAGDIRRLAGRCLKRVDLQRRFRLL 382
Query: 238 GLRVTQF 244
G+RV+
Sbjct: 383 GIRVSSL 389
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 145/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ V
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLE-------VP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +++P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFNLYRKARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
I A ++A +Q G+T+ LK++ A F T+ VTL + + I + A +
Sbjct: 276 ISKNARRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDT 335
Query: 229 --ELPVSLRLIGLRVTQFNEDKV 249
E V +RL+G+ +T EDK+
Sbjct: 336 LPEHTVGIRLLGVTMTNL-EDKM 357
>gi|365885711|ref|ZP_09424698.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
gi|365285650|emb|CCD97229.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
Length = 368
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD
Sbjct: 114 SLDEAYLDVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDH 168
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ+V+ + A F+ LP+ K GIG T + GI+T ++ +
Sbjct: 169 RKPNGQYVISPEMGA--AFVEGLPVGKFHGIGPATAAKF-NALGIHTGLDIRNQSLPFLQ 225
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
++ + G+ R RKSI +E TF+ +TE + + +L + + +
Sbjct: 226 QHFGKAGSYYYWISRGIDHRPVRANRIRKSIGAENTFAADLTEFEPMA-AELQPLIDKVW 284
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G RGRT+TLK+K A FE+ TR+ ++ +++ ++ + + LL+AELP+ +R
Sbjct: 285 RHCEATGNRGRTVTLKVKFADFEIITRSRSVVTVVATRAELERLSLALLQAELPLPKPVR 344
Query: 236 LIGLRVTQFNE 246
L+G+ ++ E
Sbjct: 345 LLGVSLSSLQE 355
>gi|374578695|ref|ZP_09651791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
gi|374427016|gb|EHR06549.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
Length = 367
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 24/267 (8%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T+ + GI +IA ++R + E GL SAGV+ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTQ-----NLQGIPLARDIALKIRERIKAETGLNASAGVSYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQFV+ + F+ +LP+ K GIG T + + + Q + A
Sbjct: 168 RKPNGQFVISPEMGP--AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNA 225
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
F S A ++ + G+ R RKSI +E TFS +T+ L+ +L + + +
Sbjct: 226 NFGKSGA-YYYWISRGVDDRPVRANRVRKSIGAETTFSNDLTQFDTLVA-ELKPLIDKVW 283
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G RGRT+TLK+K A FE+ TR+ + ++ D+ + A LL+ E+P+ S+R
Sbjct: 284 RHCEATGSRGRTVTLKIKFADFEIITRSRSAVSPVAGRADLERLACGLLEVEMPLPKSVR 343
Query: 236 LIGLRVT--QFNEDKVRAPSDPTQKTL 260
L+G+ ++ Q +D ++P Q TL
Sbjct: 344 LLGVSLSSLQAGDD-----AEPPQLTL 365
>gi|13488542|ref|NP_109549.1| DNA polymerase IV [Mesorhizobium loti MAFF303099]
gi|22095629|sp|Q98NW7.1|DPO43_RHILO RecName: Full=DNA polymerase IV 3; Short=Pol IV 3
gi|14028296|dbj|BAB54888.1| DNA-damage-inducible protein P [Mesorhizobium loti MAFF303099]
Length = 361
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 16/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ R S IAE +R + E GLT SAG++ N+ LAK+ SD NKPN
Sbjct: 108 SLDEAYLDVTQ-NRLNISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQFV+ P A F+ +LP+ K G+G T + + GI T ++ ++ S L F
Sbjct: 167 GQFVITPRHGPA---FVETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHF 222
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM- 180
S ++ + + R RKSI +E TF+ D L LAE+ +++
Sbjct: 223 GKSGL-WYYQIARAIDERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWG 279
Query: 181 --QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+ +G+RGRT+TLK+K A F+ TR+ T+ I S D A+ LL + PV +RL
Sbjct: 280 YCEGKGIRGRTVTLKIKFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRL 338
Query: 237 IGLRVTQFNE 246
+G+ ++ +
Sbjct: 339 LGVTLSSLGD 348
>gi|303326238|ref|ZP_07356681.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345891911|ref|ZP_08842739.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864154|gb|EFL87085.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345047771|gb|EGW51630.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
Length = 415
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 129/251 (51%), Gaps = 9/251 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINK 61
AS+DEAYLD + R G E+ ++ V E GLTCS G AP + LAK+CSD+NK
Sbjct: 96 ASIDEAYLDAAGLTRLFGPLE-ELIARIKDRVAEVTGGLTCSVGAAPVKFLAKICSDVNK 154
Query: 62 PNGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
P+G F+L P D F+ L + ++ G+G+ LRD+ GI T ++ +
Sbjct: 155 PDGVFILRPED---ADDFLLPLEVGRLPGVGRRMVESLRDL-GIVTVAQLRRYSPEFLEK 210
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
G+ R KS S+E TF T D+ L R L AE + A
Sbjct: 211 RYGKWGRALYERAYGIDPRPVTPERPMKSESAECTFERDTRDREFLVRMLLAHAERVGAS 270
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIG 238
+++ L GRT+TLK+K A F TR+ TL + +++E I + LL+ P ++RLIG
Sbjct: 271 LRRHKLSGRTITLKVKFADFRQITRSRTLAEATNATETIFETGRELLRELKPAQAVRLIG 330
Query: 239 LRVTQFNEDKV 249
L V+ F E+ V
Sbjct: 331 LGVSGFEENPV 341
>gi|359429948|ref|ZP_09220965.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
gi|358234628|dbj|GAB02504.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
Length = 355
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 11/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 104 SLDEAYLDVTENLKDIP-SATEVATQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
G FV+ + V+ FI L + KI G+GKVT+ L + ++T ++ L + ++L F
Sbjct: 163 GLFVIKPHQ--VLKFIQDLALNKIPGVGKVTQEKLNQL-NLHTLGDLQLIEENVLIHHFG 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
+L G+ R R+ IS E TF A ++E + + K
Sbjct: 220 KYGKQLYL-YAQGIDHRPVKAERERQQISKEITFDDDYTLAQCQHAWQPLSEQVWRSLNK 278
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIG 238
+ L R + +KLK +F+V + + + + S D L+ + L E+ + RL+G
Sbjct: 279 KQLTARGVNVKLKLKNFQVLQHSKSFKSPLQSQHD-LQQVVIQLLEEMRIDPDFQFRLVG 337
Query: 239 LRVTQFNE 246
+ V Q +
Sbjct: 338 VGVYQLQQ 345
>gi|91978101|ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris BisB5]
gi|91684557|gb|ABE40859.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris BisB5]
Length = 396
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYL +TE + GIS +IA +R + E GL SAG++ N+ LAK+ SD KP
Sbjct: 142 SLDEAYLYVTENLQ--GISLARDIALAIRARIKTETGLNASAGISYNKFLAKLASDHRKP 199
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQ+V+ + F+ +LP+ K GIG T GI T ++ +G L + +
Sbjct: 200 NGQYVISPETGP--AFVEALPVGKFHGIGPATAARFH-ALGIQTGLDI--RGRTLTFLEA 254
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 178
H ++ + G+ R RKS+ +E TFS +TE A+ +L + + +
Sbjct: 255 HFGKAGAYYYWISRGIDERPVRANRIRKSVGAENTFSQDLTEFDAMAA-ELQPLIDKVWR 313
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+ G RGRT+TLK+K A FE+ +R+ ++ + ED+ + A LL+A +P+ ++RL
Sbjct: 314 HCETTGNRGRTVTLKVKFADFEIMSRSRSVPTAVGGREDLERLAVGLLQAAMPLPKAVRL 373
Query: 237 IGLRVTQFNED 247
+G+ ++ D
Sbjct: 374 LGVSLSSLRSD 384
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 11/225 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++ V S +A E++ + E GLT SAG++ N++LAK+ SD KP+
Sbjct: 101 SLDEAFLDVSHVR-----SATLVAREIKARIRAETGLTASAGISVNKMLAKIASDYRKPD 155
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G FV+P DR + F++ LP+ + GIG+VT + GI T ++ Q L L F
Sbjct: 156 GLFVIPPDR--IDAFVAELPVERFFGIGEVTAEKMH-ALGIRTGADLRQWEELELVRHFG 212
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ ++ G+ R RKS+ +E TF T D+ +L +L ++ E + +
Sbjct: 213 KAGRSYY-GYARGIDPRPVVPNRIRKSLGAETTFEADTADREVLLGELEQVCEEVWRRLV 271
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
+ RGRT+ LKLK F TR+ TL + + S + + A LL
Sbjct: 272 RHKFRGRTVVLKLKFDDFRQITRSRTLSRPVDSHDGLCLVAGELL 316
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ + L
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDH 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AE 174
F D + G+ + R RKSI SERT++ LLY++ AEI A
Sbjct: 228 FGRFGFDLYRK-ARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNAR 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
++A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 282 RVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTV 341
Query: 233 SLRLIGLRVTQFNEDKV 249
+RL+G+ +T EDK+
Sbjct: 342 GIRLLGVTMTNL-EDKM 357
>gi|260220684|emb|CBA28482.1| hypothetical protein Csp_A07430 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 412
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 9/244 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T V + G +A ++ +++++ GLTCS GVAPN+LLAK+ S+ NKPN
Sbjct: 131 GVDEVYIDFTHVPGGQRQGGRVLARLIQKAIFDDTGLTCSVGVAPNKLLAKMASEFNKPN 190
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G ++ + M I L RKI GIG + L+ GI T ++ K L F
Sbjct: 191 GIAIVHESDLEPM--IWPLACRKINGIGPKADEKLKK-HGIETIGQLAAKELQWLMDTFG 247
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
+ + G S+S E TF DKA L + E ++A
Sbjct: 248 PRAGAWLHAAAHGQDDRPVETESEPVSMSRETTFDRDLHAVRDKAELGAIFTRLCEQVAA 307
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLI 237
D+Q++G RG+T+ +KL+ F+ TR +T+ + + ++DI + A + LK A L LRL+
Sbjct: 308 DLQRKGYRGKTVGIKLRFDDFKSVTRDITVDYFTADAKDIRRIAGLCLKRAPLQKRLRLL 367
Query: 238 GLRV 241
G+RV
Sbjct: 368 GVRV 371
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ + L
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDH 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AE 174
F D + G+ + R RKSI SERT++ LLY++ AEI A
Sbjct: 228 FGRFGFDLYRK-ARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNAR 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
++A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 282 RVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTV 341
Query: 233 SLRLIGLRVTQFNEDKV 249
+RL+G+ +T EDK+
Sbjct: 342 GIRLLGVTMTNL-EDKM 357
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+T+ S IA+ +R ++ E GLT SAGV+ N+ LAK+ S +KP+
Sbjct: 104 SVDEAFLDVTDNLMGEP-SATRIAQAIRAAIRETTGLTASAGVSYNKFLAKIASGYHKPD 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+P DR FI++LPI K G+G TE ++ GI T ++L+
Sbjct: 163 GLTVIPPDR--ARDFIAALPIGKFYGVGPATERKMQ-AHGIRTGADLLRFSRQEMVALFG 219
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
T FF + GL R RKSI +E T + D A + L ++ + +S + +
Sbjct: 220 KTGHFFHDIARGLDQRPVQPVRVRKSIGAETTLAEDILDYARVSVVLYQLVQQVSRLLAE 279
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLR 240
+ GRTLTLK++ F TR+ T + S++DIL LL A +RL+G+
Sbjct: 280 KATGGRTLTLKVRYNDFTTITRSSTTPQGFFSAQDILAQLPRLLAATEAGRRRIRLLGVT 339
Query: 241 VTQF-NEDKVR 250
V NE + R
Sbjct: 340 VANLCNEQEAR 350
>gi|383775145|ref|YP_005454214.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
gi|381363272|dbj|BAL80102.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
Length = 366
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +A + +R ++ E GL SAG++ N+ LAK+ SD
Sbjct: 113 SLDEAYLDVTE-----NLQGIPLARDVALRIRETIKAETGLNASAGISYNKFLAKLASDH 167
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLC 118
KPNGQFV+ + F+ +LP+ K GIG T + + G+ T ++ Q +
Sbjct: 168 RKPNGQFVISPEMGP--AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQSLEFMN 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED--KALLYRKLAEIAEML 176
A F S A ++ + G+ R RKSI +E TF D AL+ +L + + +
Sbjct: 225 ANFGKSGA-YYYWISRGVDERPVRANRVRKSIGAETTFQADLDVFDALII-ELRPLVDKV 282
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--L 234
+ G RGRT+TLK+K A FE+ TR+ +L +S +++ + A LL+ E+P+ +
Sbjct: 283 WRHCEATGNRGRTVTLKIKFADFEIITRSRSLPAPVSGRDELERLACGLLEVEMPLPKRV 342
Query: 235 RLIGLRVTQFN 245
RL+G+ ++
Sbjct: 343 RLLGVSLSALQ 353
>gi|50083505|ref|YP_045015.1| DNA polymerase IV [Acinetobacter sp. ADP1]
gi|81613392|sp|Q6FFG4.1|DPO4_ACIAD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49529481|emb|CAG67193.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter sp. ADP1]
Length = 351
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLNNLP-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+ + VM FI +LP++KI G+G+VT+ L+ + + T ++ + ++L F
Sbjct: 159 GLCVIKPHQ--VMQFIQNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSA 178
+L G+ + R R+ IS E TF D+ L + + +AE +
Sbjct: 216 KYGKQLYL-YAQGIDHRSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQ 270
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL---- 234
+Q + L+ R + +KLK F+V + + ++ + S ++ K LL E+ ++L
Sbjct: 271 SLQNKNLQARGVNIKLKNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQY 329
Query: 235 RLIGLRVTQFN 245
RLIG+ + Q +
Sbjct: 330 RLIGVGLYQLS 340
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ + L
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDH 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AE 174
F D + G+ + R RKSI SERT++ LLY++ AEI A
Sbjct: 228 FGRFGFDLYRK-ARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNAR 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
++A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 282 RVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTV 341
Query: 233 SLRLIGLRVTQFNEDKV 249
+RL+G+ +T EDK+
Sbjct: 342 GIRLLGVTMTNL-EDKM 357
>gi|421836285|ref|ZP_16270813.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
gi|409741873|gb|EKN41498.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
Length = 337
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 11/245 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + + LPI KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIRQDMIP--SILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL
Sbjct: 272 YKRNSGGKTVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGL 331
Query: 240 RVTQF 244
V+
Sbjct: 332 TVSNL 336
>gi|393719670|ref|ZP_10339597.1| DNA polymerase IV [Sphingomonas echinoides ATCC 14820]
Length = 361
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 119/239 (49%), Gaps = 8/239 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+
Sbjct: 109 SLDEAYLDVTEDRHGLG-SARAIAEQIRARIKAETALTASAGVSYNKFIAKLASDQNKPD 167
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ A F++SLP+++ G+G VT + GI T ++ ++
Sbjct: 168 GLCVISPRHGA--AFVASLPVKRFHGVGPVTARRM-AALGIETGADLRERPLAFLHAHFG 224
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
S D+ G+ R KS+ +ERTF A L+ L + E + +
Sbjct: 225 SYGDYLYGAARGVDHRPVRSERPSKSVGAERTFETDLSAPADLHAALDRVGEAAWVRIDR 284
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGL 239
RGRT+TLKL+ + F TRA +L + + LL A LP+ L RL+GL
Sbjct: 285 HSARGRTVTLKLRFSDFRTITRARSLNSVV-DRDAFFAIGHALLDAHLPLPLGVRLLGL 342
>gi|303237162|ref|ZP_07323732.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
gi|302482549|gb|EFL45574.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
Length = 361
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 136/255 (53%), Gaps = 21/255 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++E R + ++A +++ ++ E GLT SAGV+ N+ LAK+ SD KPN
Sbjct: 108 SLDEAFLDVSE-NRANIVLAKDVALKIKEEIFAETGLTASAGVSYNKFLAKIASDYRKPN 166
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G F++ ++ + FI+ LPI K G+G T + + GI T +++ Q + L VF
Sbjct: 167 GIFIVHPEKS--LNFIAELPIEKFWGVGHKTAETMHQM-GIFTGKQLRQVSLAHLTQVFG 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLS 177
A F+ + G+ R RKS+ E+TF E K L LY + E+ + LS
Sbjct: 224 KMGAVFY-NFSRGIDERPVEAYRERKSVGCEQTFMEDITGEIKILIELYHIVIELVKRLS 282
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVS 233
K GRTLTLK+K ++ +R+VT + S +DIL A LLK P+
Sbjct: 283 ----KSKFEGRTLTLKIKWSATSQISRSVTTDHILRSKDDILPLAKNLLKQTEYKHRPI- 337
Query: 234 LRLIGLRVTQFNEDK 248
RLIGL V+ E K
Sbjct: 338 -RLIGLSVSGEMEGK 351
>gi|386391294|ref|ZP_10076075.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio sp. U5L]
gi|385732172|gb|EIG52370.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio sp. U5L]
Length = 388
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 6/247 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAY+D+T G + ++ V E GL CS G+AP + +AK+ SD +KP
Sbjct: 98 ASIDEAYVDVTGTETLFGPPE-ALGRRVKQMVREATGLPCSVGIAPVKFIAKIASDYDKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ + V F++ LP+ KI G+GK E L GI ++L
Sbjct: 157 DGLTVVSEADVPV--FLADLPVGKIPGVGKRAEASL-SRLGIRRVGDILAYPPEFLERHC 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ G GS AR KS+S+E TF T D+ L L +E + +++
Sbjct: 214 GKWGLDLYAKAHGRGSATVAVAREAKSVSAENTFDTDTADRERLAAWLLHQSERIGRELR 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
+E L GRT+TLKLK F TR+ TL + I S I A+ LL AE LP +RLIG+
Sbjct: 274 QENLAGRTVTLKLKFNDFRQITRSRTLPEPIDSDGAIFAAATALLDAEPLPRPVRLIGVG 333
Query: 241 VTQFNED 247
V F +
Sbjct: 334 VANFGRE 340
>gi|389690299|ref|ZP_10179316.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
gi|388589817|gb|EIM30105.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
Length = 378
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 14/263 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI ++A E+R +++E GLT S G++ + LAK+ SD KP
Sbjct: 124 SLDEAYLDVTENLK--GIPYATQVAREIRAKIFQETGLTASVGISYQKFLAKMASDQRKP 181
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG FV+ + F+ LPI+K GIG T + GI T ++ +
Sbjct: 182 NGMFVITPEMGP--AFMEQLPIQKFHGIGPATAAKF-NRLGIFTGLDLKGRSLEFLQERF 238
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
++ + G+ R RKS+ +E TFS +TE +A + L I + +
Sbjct: 239 GKAGSYYYWLAQGVDHRPVCPDRIRKSVGAENTFSNDLTELEA-MKTALQPIIDKVWRHC 297
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIG 238
+ G+RGRT+TLK+K A F TR+ TL + E + + LL A P +RL+G
Sbjct: 298 DQTGVRGRTVTLKVKYADFHQITRSRTLSGMVEGREALEAASFELLSALVPFPKPVRLLG 357
Query: 239 LRVTQFNEDKVRAPSDPTQKTLT 261
+ ++ N D+ S+P Q +L
Sbjct: 358 VSLSTLNTDE---ESEPPQLSLA 377
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 6/205 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V + S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+
Sbjct: 109 SLDEAYLDVT-VNKCGLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPD 167
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ PN V+ F+ LP+RK+ G+GKVT+ L + GI T ++ + +
Sbjct: 168 GLFVVRPNK---VLAFLEPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHSAQELEHYF 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
+ G+ + + +S+E TFS + + +AE + K
Sbjct: 224 GRYGRRLYELARGIDEREVQPDQPLQQVSAETTFSRDVRLDAVGEAIDRMAEKVWDQALK 283
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVT 207
+G GRT+ LKLKT F + TR+ T
Sbjct: 284 KGALGRTVVLKLKTDRFRILTRSQT 308
>gi|116254503|ref|YP_770339.1| DNA polymerase IV [Rhizobium leguminosarum bv. viciae 3841]
gi|115259151|emb|CAK10264.1| putative DNA polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 370
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 116 SLDEAYLDVTENLKGMEIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPN 174
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + F+ +LP++K G+G T ++ GI T ++ K
Sbjct: 175 GQAVITPKNGPG---FVEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQHF 230
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF D L + +L +AE + +
Sbjct: 231 GKSGPYFYGIARGIDERQVRPDRIRKSVGAEDTFVEDIDNFDLAKAELRPLAEKVRRYCE 290
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ G+T+T+K+K + F TR+ T+ +S + +L+ A LL + P +RL+G+
Sbjct: 291 AHDITGKTVTVKIKYSDFSQATRSQTVSGAVSDVDQMLEIAETLLASVFPFKRPVRLLGV 350
Query: 240 RVTQFNEDK 248
++ N ++
Sbjct: 351 TLSSLNTEE 359
>gi|325921296|ref|ZP_08183156.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
gi|325548263|gb|EGD19257.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
Length = 359
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 15/250 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTQA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F
Sbjct: 158 DGQFVIAPSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 G-SFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDIALDALDPHILRLAEKTWLA 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRL 236
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL
Sbjct: 272 TRRTERIGRTVVLKLKTSNFRILTRSYTPEQPPASLEALAEIALALTRRVELPADTRYRL 331
Query: 237 IGLRVTQFNE 246
+G+ ++ F++
Sbjct: 332 VGVGLSGFSD 341
>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
gi|300076398|gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 134/265 (50%), Gaps = 18/265 (6%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 64
+DE Y+D++ + E+A +++ +V+ LTCS GVAPN++LAK+ S+++KPNG
Sbjct: 125 IDEIYIDLSAWSD----TAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180
Query: 65 QFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-LLCAVF 121
+L P D + I LP+RKI GIG K E + GI+T ++ LL A F
Sbjct: 181 LTILTPAD---IERRIWPLPVRKINGIGPKAAEKL--SALGIDTVADLAGAAPDLLRAHF 235
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLS 177
S A++ V G+ KSIS E TF D+A L + L+
Sbjct: 236 GRSYAEWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLA 295
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
AD+ ++G GRT+ +KLK A F TR VTL + I + A LK L LRL
Sbjct: 296 ADLDRKGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRL 355
Query: 237 IGLRVTQFN-EDKVRAPSDPTQKTL 260
+G+RV + +D+ A S Q L
Sbjct: 356 LGVRVGALSKKDEQAAASHAVQAEL 380
>gi|90418642|ref|ZP_01226553.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
gi|90336722|gb|EAS50427.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
Length = 399
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 139/268 (51%), Gaps = 24/268 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S +IAE +R + E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 143 SLDEAYLDVTENLHDIP-SATQIAEMIRQRIREVTGLTASAGVSYNKFLAKLASDYRKPD 201
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ M F+ LPI + G+G T ++ FGI+T ++ K
Sbjct: 202 GIFVV-TPAMGP-GFVEDLPIGRFHGVGPATAAKMQR-FGIHTGRDLHDKSLPFLQEHFG 258
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK- 182
T ++ S+ G+ R RKS+ +E TF A L+ E+ E L + K
Sbjct: 259 KTGPYYYSISRGIDERPVRANRIRKSVGAENTFG-----ADLF-AFDEMREALQPILDKV 312
Query: 183 ------EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SL 234
+RGRT+TLK+K A F+ TRA + + ++S +D+ + A LL A +P +
Sbjct: 313 WRYCETSTIRGRTVTLKVKFADFQQITRARSAVQPVASRDDLERIALSLLGAAMPFDKGV 372
Query: 235 RLIGLRVTQFNEDKVRAPSD--PTQKTL 260
RL+G+ ++ + + SD PTQ +L
Sbjct: 373 RLLGVALSSLIREGM---SDETPTQFSL 397
>gi|402756923|ref|ZP_10859179.1| DNA polymerase IV [Acinetobacter sp. NCTC 7422]
Length = 355
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 104 SLDEAYLDVTENLKNIP-SATEVAAQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G FV+ + V++FI L + KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 163 GLFVIKPHQ--VLSFIQDLALNKIPGVGKVTQERLQQL-NLHTLGD-LQKIEENVLIHHF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF A + E + +
Sbjct: 219 GKYGKQLYL-YAQGIDHRPVKAERERQQISKEITFDEDYTFAQCSHAWQPLTEQVWRSLN 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLI 237
K+ L R +T+KLK +F+V + + ++ + S +D L + L E+ + RL+
Sbjct: 278 KKQLTARGVTIKLKLKNFQVLQHSKSFKQALQSQQD-LGQVILQLLDEMHIDPESQFRLV 336
Query: 238 GLRVTQFN 245
G+ V Q
Sbjct: 337 GVGVYQLQ 344
>gi|430744026|ref|YP_007203155.1| nucleotidyltransferase/DNA polymerase [Singulisphaera acidiphila
DSM 18658]
gi|430015746|gb|AGA27460.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Singulisphaera acidiphila DSM 18658]
Length = 361
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 19/245 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE +GI S E+AEE+R + E GLT SAGV+ N+ LAK+ SD KP
Sbjct: 106 SLDEAYLDVTE--NRKGIFSATEVAEEIRAKIRAETGLTASAGVSYNKFLAKMASDERKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVF 121
+G FV+ + + F+ +LP+ K GIG VT + + GI+ ++ Q S L F
Sbjct: 164 DGLFVITPKKGS--AFVENLPVGKFHGIGPVTRSKM-EALGIHNGGDLRSQTLSFLQKHF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIAEML 176
+ ++ S+ G+ R RKSI +E T F+V E +A L + ++
Sbjct: 221 RKA-GPYYFSLARGIDERPVCADRVRKSIGAETTFNTDLFTVEEARAALEPLIGKVWSYC 279
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--L 234
+RGRT+TLK K A F+ TR T+ ++S + + S LL+ PVS +
Sbjct: 280 EGTT----IRGRTVTLKAKYADFQQITRNRTVDVPVTSRAVLEEVVSALLERLFPVSKGI 335
Query: 235 RLIGL 239
RL+G+
Sbjct: 336 RLLGV 340
>gi|333381439|ref|ZP_08473121.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830409|gb|EGK03037.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
Length = 348
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 139/254 (54%), Gaps = 19/254 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE + I S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKP
Sbjct: 92 SLDEAFLDVTE--NNKNIPSATQIAQEIKQKILEATRLTASAGVSFNKFLAKIASDQNKP 149
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
+G FV+ P + F+ +L I + G+GKVT + + GI ++ Q+ + L AV
Sbjct: 150 DGLFVVKPKN---AEQFVETLAIEQFFGVGKVTAKRMHQL-GIKNGWDLKQRSENELIAV 205
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEML 176
F + +F + + R RKS+SSE TF E+ AL+ L E+A
Sbjct: 206 FGKAGHIYFQN-ARAIDDRPVESQRIRKSMSSETTFEHDIDNLEELALI---LDEVARDA 261
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
D++++ + RT+TLK+K A F+ TR+ T ++ E K LL+ +L +R
Sbjct: 262 FHDIERKKFKARTVTLKIKYADFKTITRSKTFPASVADYESFYKAGFELLQNIDLSPKVR 321
Query: 236 LIGLRVTQFNEDKV 249
LIGL + NED++
Sbjct: 322 LIGLGLKN-NEDEM 334
>gi|407716219|ref|YP_006837499.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
gi|407256555|gb|AFT66996.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
Length = 365
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 7/209 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ +G S IAE ++ + E L SAGV+ N+ LAK+ SD++KP+
Sbjct: 105 SLDEAYLDVSHSSEYKG-SATRIAEAIKHDIKAETQLIASAGVSYNKFLAKIASDMDKPD 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G +V+ P A FI++LPI G+G TE I + GI T ++ K S+
Sbjct: 164 GLYVIRPEQGEA---FIATLPIGSFYGVGPATE-IKMNKLGIKTGRDLRSKSSVELTKHF 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+A++F + G+ R RKS+ E TF DK LL KL ++A+ + ++
Sbjct: 220 GKSAEYFFQIARGIDHRPVRSTRIRKSLGKETTFKTDVYDKTLLLEKLNQLAQKVFENLA 279
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQK 210
+ +T+T+K+K A+F+ TR+ + K
Sbjct: 280 AQQFMAKTITVKIKYANFKSVTRSYSSTK 308
>gi|294664551|ref|ZP_06729895.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605685|gb|EFF48992.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 359
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTQA--KTGMQLATEVAQSIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ ++ F++
Sbjct: 333 GVGLSGFSD 341
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 7/225 (3%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKP
Sbjct: 103 SLDEAYLDVTH--NKKGIDSANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKP 160
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NGQ + + V++F+ +LPI + GIG VT + + + GI +++ +K
Sbjct: 161 NGQKTIHPTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKSLEYLITHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED-KALLYRKLAEIAEMLSADMQ 181
+ + G+ + R KS+ E T++ D + + ++L +A+ L +
Sbjct: 218 GKMGRHYYDIVRGIHRSEVKPHRIAKSVGVEHTYADDIDTEKDIDQQLIRLAQELYERAE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 226
K+ ++G++LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 278 KKQVKGKSLTLKIKYKDFSLFTRSKTQDLYFETEEEMYQIARFLW 322
>gi|349575619|ref|ZP_08887530.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
gi|348012887|gb|EGY51823.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
Length = 394
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 4 SLDEAYLDITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD++ R +SG +IA+ +R + E GLT SAGVAPN+L+AK+ SD
Sbjct: 134 SLDEAYLDVS-----RPLSGHRYARDIAQAIRAEIRAETGLTASAGVAPNKLIAKIASDW 188
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---- 115
KPNGQ V+ ++ V+ F+ LP KI G+GKVT + D+ GI T +M Q
Sbjct: 189 RKPNGQTVVAPEQ--VLRFLHPLPPAKIPGVGKVTAAKMADL-GIRTIADMAQWPREHLV 245
Query: 116 LLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 175
L + H D + G+ R K +S E T + A L L IAE
Sbjct: 246 LHFGRYGHRLYD----LARGIDERPVRPEREYKQVSVEHTLAQDVPLAGLLPMLPGIAEE 301
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 207
+ + ++ R LTLKLKTA F+V TR+ T
Sbjct: 302 VWRQLARKRYAARRLTLKLKTADFQVLTRSAT 333
>gi|323138008|ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
gi|322396727|gb|EFX99254.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
Length = 382
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T +GI + EIA+E+R ++ + GLT SAGV+ N+ LAK+ SD KP
Sbjct: 128 SLDEAYLDVT--TNLKGIETATEIAQEIRAAIRSKIGLTASAGVSYNKFLAKLASDHRKP 185
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
+G FV+ RM F+ + + K G+G T+ + + GI+T ++ + L F
Sbjct: 186 DGMFVI-TPRMGP-AFVEGMAVEKFHGVGPATKAKM-NRLGIHTGRDLRSQALPFLIENF 242
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ F+ + G+ R RKS+ +E+TF++ D A + L + + +
Sbjct: 243 GKAGGHFYW-ISRGVDHRPVRADRIRKSVGAEQTFALDMTDLAAMREALEPVIDKVWRHC 301
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ G+RGRT+TLK+K + F++ TR+ TL I + ++ ++ L P +RL+G
Sbjct: 302 ETTGVRGRTVTLKVKFSDFDLITRSRTLPHAIDTRAELARNVFETLTGAFPFRKPVRLLG 361
Query: 239 LRVTQFN 245
+ ++
Sbjct: 362 VSISSLG 368
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ + L
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDH 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AE 174
F D + G+ + R RKSI SERT++ LLY++ AEI A
Sbjct: 228 FGRFGFDLYRK-ARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNAR 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
++A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 282 RVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAARIEQVAESIFDTLPEHTV 341
Query: 233 SLRLIGLRVTQFNEDKV 249
+RL+G+ +T EDK+
Sbjct: 342 GIRLLGVTMTNL-EDKM 357
>gi|156340492|ref|XP_001620463.1| hypothetical protein NEMVEDRAFT_v1g148076 [Nematostella vectensis]
gi|156205419|gb|EDO28363.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 121/205 (59%), Gaps = 11/205 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ ++ S IA+E+R +++E L SAG++ N+ +AK+ SDINKPN
Sbjct: 27 SLDEAYLDVTK-NKKGNPSASLIAQEIRQRIWDELTLRASAGISINKFIAKIASDINKPN 85
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
GQ + P + V++F+ LPI K GIGKVT + + +GI + L+K + L A
Sbjct: 86 GQKTINPEE---VVSFLEELPINKFFGIGKVTAAKMHN-YGIFKGAD-LKKWTKEELEAT 140
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F S A ++ V G+ ++ R RKSI++ERTF+ + + +L +IA L
Sbjct: 141 FGKSGAQYYHIV-RGIHNSQVKPNRVRKSIAAERTFTENISSEIYMIERLDKIAVELEKR 199
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTR 204
M +G+T+TLK+K + F +TR
Sbjct: 200 MVASNTKGKTITLKIKYSDFTQQTR 224
>gi|421107022|ref|ZP_15567582.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
gi|410007936|gb|EKO61615.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
Length = 362
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 18/256 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ IS + IA+E+R +++ GLT SAGV+ ++ ++K+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNISFAVTIAKEIRAEIFKRTGLTASAGVSNSKFISKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 161 NGLTVVLPDD---VISFIDPLPVSSFHGVGKVTSRKMKEL-GIYTGKDLRTKNIEELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G +R RKS+ +E TF + D L ++L ++A ++ +
Sbjct: 217 FGKMGIYYYKISRGEDERMVESSRERKSLGAEYTFDQDKLDYNDLLKRLKDVAVIVERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---------KAELP 231
+K+ G+TLTLK+K F ++TR+ TL + I + ++ A+ L K
Sbjct: 277 EKKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKANELYSTAAELFEEFFETKYGKKSAI 336
Query: 232 VSLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 337 KAIRLLGISLSHPNSE 352
>gi|254491040|ref|ZP_05104221.1| ImpB/MucB/SamB family [Methylophaga thiooxidans DMS010]
gi|224463553|gb|EEF79821.1| ImpB/MucB/SamB family [Methylophaga thiooxydans DMS010]
Length = 362
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 135/249 (54%), Gaps = 16/249 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T G S IA+ ++ + +E L SAGV+ N+ LAK+ SD++KPN
Sbjct: 104 SLDEAYLDVTYTEDFNG-SATLIAKAIKQDILQETNLYASAGVSYNKFLAKIASDMDKPN 162
Query: 64 GQFV-LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G +V LP A F+S L I K GIG TE ++ + GI T ++ QK
Sbjct: 163 GLYVILPQQGEA---FVSELAIGKFHGIGPATEAKMKQL-GIATGYDLRQKSEAELTERF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLS 177
+ ++ ++ + R RKS+ E TF SV E L KL+++A+++
Sbjct: 219 GKSGQYYFNIARAIDERPVRSTRIRKSLGKETTFSHDILSVPE----LTAKLSDLADIVL 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRL 236
+ K+ L+ RT+T+K+K + F+ TRA TL+ I+S++ +L + E ++RL
Sbjct: 275 ESLAKQNLKARTVTVKVKYSDFQQVTRAQTLEHSIASADLNEWIPKLLARTEAGQKAVRL 334
Query: 237 IGLRVTQFN 245
+GL ++ F+
Sbjct: 335 VGLSLSGFD 343
>gi|333912981|ref|YP_004486713.1| DNA polymerase IV [Delftia sp. Cs1-4]
gi|333743181|gb|AEF88358.1| DNA polymerase IV [Delftia sp. Cs1-4]
Length = 440
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 13/246 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ ++ + GLTCS GVAPN+LLAK+ S+ NKPN
Sbjct: 159 GVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPN 218
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
G V P+D AV I L RKI GIG + L+ + GI T E L K SL L
Sbjct: 219 GISIVQPDDLQAV---IWPLACRKINGIGPKADAKLQSL-GIQTIGE-LAKQSLPQLVQW 273
Query: 121 FSHSTADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176
F + ++ V G T++ + + ER D+A L ++ E L
Sbjct: 274 FGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERL 333
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
+ D+Q++G GRT+ +KL+ F+ TR TL+ ++ + + + A LK L LR
Sbjct: 334 AQDLQRKGYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLR 393
Query: 236 LIGLRV 241
L+G+RV
Sbjct: 394 LLGVRV 399
>gi|167563378|ref|ZP_02356294.1| DNA polymerase IV [Burkholderia oklahomensis EO147]
gi|167570546|ref|ZP_02363420.1| DNA polymerase IV [Burkholderia oklahomensis C6786]
Length = 394
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 138/249 (55%), Gaps = 20/249 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R +G SG IA E+R V++ G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 122 SLDEAYLDVSRATRCQG-SGTLIAREIRERVHDTVGVTVSAGVAPNKFIAKIASDWNKPD 180
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC+E L+ SL
Sbjct: 181 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DRLGIRTCDE-LRGWSLF--DLH 233
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D L + AEI +L
Sbjct: 234 HEFGAFGRRLYELAHGIDERPVRADQERKSVSVETTY--VQDLDTLDQCAAEIRRLTALL 291
Query: 177 SADMQKEG-LRG-RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL 234
A +++ G +R R L +K++ A F+ RT + + + A L++ + PV L
Sbjct: 292 DARIERAGAVRSIRKLYVKIRFADFQ-RTTVECVADATDAETAVALLAKGLVRRKQPVRL 350
Query: 235 RLIGLRVTQ 243
+G+R+ +
Sbjct: 351 LGVGVRIDE 359
>gi|347537985|ref|YP_004845409.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
gi|345641162|dbj|BAK74995.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
Length = 359
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 133/248 (53%), Gaps = 21/248 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ +G + + +AE +R+ + +E G+T SAG+APN+ LAKV SD NKP+
Sbjct: 105 SLDEAYLDVSGRPHYQGSASL-MAEAIRSRIRDEVGITASAGIAPNKFLAKVASDWNKPD 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P D V F+ +LP+ KI G+G VT L G+ CE++ +G L +
Sbjct: 164 GQFVIRPED---VDAFVLALPVEKIPGVGAVTASRLH-ALGVRHCEDV--RGWELAELVR 217
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
H + ++ G+ R RKSIS E T++V D KL E+ E L+
Sbjct: 218 HFGRFGERLHALARGIDPRPVSIERLRKSISVEETYAVDLPDLDACLAKLPELLERLAHR 277
Query: 180 MQKEGLRG-RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL----LKAELPVSL 234
+++ G R L++KLK A F T+ Q S D L A++L + PV L
Sbjct: 278 LERAGQPAFRGLSVKLKFADF---TQTTVEQAGQQLSRDTL--AALLQVGHARGAQPVRL 332
Query: 235 RLIGLRVT 242
+G+R+
Sbjct: 333 LGVGVRLA 340
>gi|71411339|ref|XP_807923.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872023|gb|EAN86072.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 21/280 (7%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 208 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 267
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R V+ F+ LP+R + GIG V + +LR V GI TC ML+K LLC
Sbjct: 268 KPNGQHELRLRTRQDVVEFMKDLPVRAVPGIGPVQDAVLR-VLGIRTCGCMLRKKGLLCF 326
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEM 175
+F T F+LS GLG+ +N + R +K++ E TF + +A L + + E+
Sbjct: 327 LFPEKTFRFYLSAGLGVVRSNADRMRSDGTQKTVGHEITFKRRLKSEAELKQIVLEVLVA 386
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ + + + +TL +K +FE ++TL + + + + LL+ L +
Sbjct: 387 VHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLASFEN 446
Query: 234 LRLIGLRVTQFN------------EDKVRAPSDPTQKTLT 261
RL+G+R+ + E K R P+ T L+
Sbjct: 447 FRLVGVRLGKLQSTSRKKLISGVEERKGRPPARITASVLS 486
>gi|418297525|ref|ZP_12909366.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
gi|355537711|gb|EHH06966.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
Length = 365
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ I+ +IA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 108 SLDEAYLDVTENLKDMPIA-TDIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T ++ + GI T ++ K
Sbjct: 167 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMQRL-GIETGTDLKAKSLQFLVEHF 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF+ D L +L +AE + A +
Sbjct: 223 GKSGPYFYGIARGIDDRRVRPDRVRKSVGAEDTFTADISDLDLATSELRPLAEKVWAYCE 282
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+G G+T+T+K+K + F TR+ T S +DI A+ LL P +RL+G+
Sbjct: 283 AKGFSGKTVTVKIKYSDFTQATRSRTSALPYSGIKDIFDAANALLAGVYPFKRPVRLLGV 342
Query: 240 RVTQFNEDK 248
++ +K
Sbjct: 343 TLSSLTNEK 351
>gi|407842871|gb|EKG01200.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 514
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 9/252 (3%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 208 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 267
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ LP+R + GIG V + +LR V GI TC +L+K LLC
Sbjct: 268 KPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAVLR-VLGIRTCGCVLRKKGLLCF 326
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEM 175
+F T F+LS GLG+ +N R +K++ E TF + +A L + + E+
Sbjct: 327 LFPEKTFRFYLSAGLGVVRSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVA 386
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ + + + +TL +K +FE ++TL + + +L+ LL+ L
Sbjct: 387 VHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDK 446
Query: 234 LRLIGLRVTQFN 245
RL+G+R+ +
Sbjct: 447 FRLVGVRLGKLQ 458
>gi|392966693|ref|ZP_10332112.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
gi|387845757|emb|CCH54158.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
Length = 374
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 135/247 (54%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ +IA+E++ + +E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 119 SLDEAYLDVTERA-SADLTATQIAQEIKERIRQETQLTASAGVSYNKFLAKLASDYRKPD 177
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P+ +A F+ L + + G+G+VT + + GI T ++ Q+
Sbjct: 178 GLFVIKPHQGLA---FVEQLNVGQFHGVGRVTAEKMNQL-GIFTGLDLRQQTEAFLTRHF 233
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ S+ + R RKS+ SE TFS +TE+ LL L + + + A
Sbjct: 234 GKVGHHYYSIARAIDDRPVTANRVRKSVGSENTFSHDLTEESELL-TGLEPLTDDVWAYC 292
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
++ G+ GRT+TLK+K A F+ TR+ TL ++S + + + LL LP+ +RL+G
Sbjct: 293 ERTGVYGRTVTLKVKYADFQQITRSRTLPTTVASRNILQQITADLLTGLLPLPKPVRLLG 352
Query: 239 LRVTQFN 245
+ ++ +
Sbjct: 353 VSISNLD 359
>gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
gi|330430184|gb|AEC21518.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
Length = 387
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 19/253 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D+++ + +E+A ++ +V++ GL+CS G++PN+LL+K+ S+++KP+
Sbjct: 128 GIDEIYIDLSKHPDDT----LELARNIKQAVFQATGLSCSIGISPNKLLSKIASELDKPD 183
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVF 121
G ++ P D A I LP+ K+ GIG L GINT E+ LL ++F
Sbjct: 184 GITIIGPGDLEA---RIWPLPVSKVNGIGPKANTRLAAA-GINTIAELAAAPPELLQSLF 239
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFR--KSISSERTFS----VTEDKALLYRKLAEIAEM 175
S A + ++V G+ N P + KSIS E TF V D+ +L + ++ E
Sbjct: 240 GLSYAQWLMNVARGI--DNRPVVTYSEPKSISRETTFERDLHVQHDRKVLSVQFLQLCEQ 297
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSL 234
L D+ ++G GRT+ +KL+ +F TR +TL S++ I A LK EL +
Sbjct: 298 LEGDLLRKGYVGRTIGIKLRFDNFRTVTRDLTLPGPTGSAQAIHHAAGQCLKRIELKHRI 357
Query: 235 RLIGLRVTQFNED 247
RL+G+R++ D
Sbjct: 358 RLLGVRISGLQPD 370
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +E TF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTEHTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 24/257 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G VLP D ++F++ LPI K G+GK + L ++ GI T +++L+ + L
Sbjct: 172 HGLTLVLPQD---ALSFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDH 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AE 174
F D + G+ + R RKSI SERT++ LLY++ AEI A
Sbjct: 228 FGRFGFDLYRK-ARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNAR 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 282 RVVALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTV 341
Query: 233 SLRLIGLRVTQFNEDKV 249
+RL+G+ +T EDK+
Sbjct: 342 GIRLLGVTMTNL-EDKM 357
>gi|335429441|ref|ZP_08556339.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
gi|334889451|gb|EGM27736.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
Length = 398
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 15/226 (6%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
S+DE YLD+TE+ + + +E+A+E++T ++EE L CS G+APN+ LAK+ SD+ K
Sbjct: 104 VGSIDEGYLDVTELAKSK--HPVELAKEIQTRLHEEIKLPCSIGIAPNKFLAKMASDMKK 161
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-- 119
P G VL R V + S+PI K+ GIGK T L + I T ++ K + L A
Sbjct: 162 PLGITVL--RRRDVPDMLWSMPIGKMYGIGKKTAPKLLNE-EIKTIGDLANKENELKARK 218
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFS---VTEDKALLYRKLAEIAE 174
V + F+L+ G G++ +R KS+ + RT+S V + +A Y+KL E++E
Sbjct: 219 VLGNQYNHFYLNAN-GYGNSKIDLSRHSDYKSVGNSRTYSKNIVKKQEA--YQKLDELSE 275
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 220
M+S + ++ +T+T++++ FE T++ T++K++++ ++ K
Sbjct: 276 MVSNRLIRKTYLAKTITVQIRYKDFETHTKSKTIEKHVNTKVELFK 321
>gi|160900719|ref|YP_001566301.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
gi|160366303|gb|ABX37916.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
Length = 437
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 13/246 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ ++ + GLTCS GVAPN+LLAK+ S+ NKPN
Sbjct: 156 GVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPN 215
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
G V P+D AV I L RKI GIG + L+ + GI T E L K SL L
Sbjct: 216 GISIVQPDDLQAV---IWPLACRKINGIGPKADAKLQSL-GIQTIGE-LAKQSLPQLVQW 270
Query: 121 FSHSTADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176
F + ++ V G T++ + + ER D+A L ++ E L
Sbjct: 271 FGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERL 330
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
+ D+Q++G GRT+ +KL+ F+ TR TL+ ++ + + + A LK L LR
Sbjct: 331 AQDLQRKGYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLR 390
Query: 236 LIGLRV 241
L+G+RV
Sbjct: 391 LLGVRV 396
>gi|71415114|ref|XP_809635.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874047|gb|EAN87784.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 21/280 (7%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 208 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 267
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ LP+R + GIG V + ILR V GI TC ML+K LLC
Sbjct: 268 KPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAILR-VLGIRTCGCMLRKKGLLCF 326
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEM 175
+F T F+LS GLG+ +N R +K + E TF + +A L + + E+
Sbjct: 327 LFPEKTFRFYLSAGLGVVRSNADLMRSDGTQKKMGHEITFKRRLKSEAELKQIVLEVLVA 386
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ + + + +TL +K +FE ++TL + + + + LL+ L
Sbjct: 387 VHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLTSFDK 446
Query: 234 LRLIGLRVTQFN------------EDKVRAPSDPTQKTLT 261
RL+G+R+ + E K R P+ T L+
Sbjct: 447 FRLVGVRLGKLQSTSCKKLISGVEERKGRPPARITASVLS 486
>gi|390365302|ref|XP_003730788.1| PREDICTED: uncharacterized protein LOC754579 [Strongylocentrotus
purpuratus]
Length = 508
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 99/152 (65%), Gaps = 6/152 (3%)
Query: 101 VFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE 160
GI TC ++ Q+ +L +FS +++ FL + LGLGST+ + RKS+S+ERTF
Sbjct: 4 ALGIQTCTDLYQQRALSYLLFSQTSSSHFLHISLGLGSTHVERDGERKSMSTERTFKEIS 63
Query: 161 DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 220
+ LY K E+ E L+ D++KE ++G+T+T+KLKT +FEV++RA +L+ + SS++I
Sbjct: 64 IPSELYSKCMELCEALAEDLKKEQIQGKTVTVKLKTVNFEVKSRASSLKVPVRSSQEIFA 123
Query: 221 HASVLLKAEL------PVSLRLIGLRVTQFNE 246
A L++ E+ P+ LRL+G+R++ F +
Sbjct: 124 IARDLIRTEIRACHPQPLRLRLMGVRLSSFQD 155
>gi|121606049|ref|YP_983378.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595018|gb|ABM38457.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 431
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 17/274 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T V + G +A ++ +++E+ GLTCS GVAPN+LLAK+ S+ NKPN
Sbjct: 150 GIDEVYIDFTGVPGGQREGGRALARLIQRAIFEKTGLTCSIGVAPNKLLAKMASEFNKPN 209
Query: 64 GQFVLPNDRMA-VMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAV 120
G ++ R A + T I L +RKI GIG K E + R GI T E+ L +
Sbjct: 210 GISIV---READLQTLIWPLNVRKINGIGPKAGEKLAR--LGIQTIGELAALDRQFLISQ 264
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEML 176
F +T + V G + S+S E TF DKA L + E +
Sbjct: 265 FGKATGAWMHEVAWGRDDSPVVTESEPVSMSRETTFERDLHAVRDKAELGAIFTRLCEQV 324
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
+AD+Q++G RT+ +KL+ F + TR T Y + I K A + LK L LR
Sbjct: 325 AADLQRKGYVARTIGIKLRYDDFRIATRDQTAPAYTDDARTIRKLAGLCLKRVPLEQRLR 384
Query: 236 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHA 269
L+G+R + V+A P + SG A
Sbjct: 385 LLGVRASAL----VKAGEAPVHEQNWPSAQSGRA 414
>gi|440224781|ref|YP_007338177.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
gi|440043653|gb|AGB75631.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
Length = 371
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + I+ EIA E+RT + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 114 SLDEAYLDVTQNHKGMEIA-TEIALEIRTRIKQVTGLNASAGISYNKFLAKMASDLNKPN 172
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ +LP++K G+G T + +GI T ++ K
Sbjct: 173 GQAVITPKNGPA---FVETLPVKKFHGVGPATAERMHK-YGIETGLDLKSKSLAFLQEHF 228
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
+F + G+ R RKSI +E TF +D L +L +A+ + +
Sbjct: 229 GKAGPYFYGIARGIDERQVKPDRIRKSIGAEDTFVEDIDDLELATAELRPLAQKVWRYCE 288
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
G +T+T+K+K + F TR+ T ++ + +L+ A+ LL P + +RL+G+
Sbjct: 289 TGGFSAKTVTVKIKYSDFTQATRSRTSSLPVADAGAVLETAAALLATVHPFARPIRLLGI 348
Query: 240 RVTQFNEDK 248
++ ++
Sbjct: 349 TLSSLTNEE 357
>gi|149177333|ref|ZP_01855938.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
gi|148843858|gb|EDL58216.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
Length = 388
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 12/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++ G +G EIA ++ V L S GVAPN+ LAK+ SD +KP+
Sbjct: 93 SLDEAFLDVSGSQLLFG-NGREIAASIKQEVRHSLQLIASVGVAPNKFLAKIASDADKPD 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKV-TEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G V+ D+ + F+ LP+ ++ GIGK+ T+ R GI T ++ + + +L +F
Sbjct: 152 GLVVVEPDK--IQEFLDPLPVSRVWGIGKMATQRFNR--LGIQTISQVRVLEPKILTELF 207
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ ++ GL R KSIS E TFS D +L L ++ E +S +
Sbjct: 208 GEQGLHLW-NLSQGLDERAVIPERQAKSISRETTFSSDVNDLEILRIILMDLVEDVSRRL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLI 237
+K LRG+T+ LK++ F TR++T+ + + +I + A ++L +L P+S+RLI
Sbjct: 267 RKNKLRGKTIQLKIRYDDFSTFTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLI 326
Query: 238 GLRVTQFN 245
G+ VT F
Sbjct: 327 GVGVTGFQ 334
>gi|158520246|ref|YP_001528116.1| DNA-directed DNA polymerase [Desulfococcus oleovorans Hxd3]
gi|158509072|gb|ABW66039.1| DNA-directed DNA polymerase [Desulfococcus oleovorans Hxd3]
Length = 384
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 127/247 (51%), Gaps = 14/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLDI+ R G I + ++ V++ G+TCS GVAP + LAK+ SD+NKP+
Sbjct: 98 SIDEAYLDISGCERLHGTPET-IGKNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPD 156
Query: 64 GQFV-LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V LP A FI +LP+ K+ G+G VT+ L + GI T ++++ L V S
Sbjct: 157 GLMVILPE---AADRFIETLPVHKVPGVGSVTKKQL-ALMGIETLGDVVR---LPDGVLS 209
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
F + G+ + KS+S E T S T +K L L A +
Sbjct: 210 KKLGKFGRRLKELSRGIDDSRVVPWHPAKSVSEETTLSRDTAEKQELRHHLLRQAGDVCR 269
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLI 237
+QK R R + +K+K A F TR TL + SS+ I + AS LL K L +RLI
Sbjct: 270 HLQKLNARARVVFIKIKYADFSQTTRQTTLDAPVQSSDTIYRQASALLEKQTLAQKVRLI 329
Query: 238 GLRVTQF 244
G+ VT+
Sbjct: 330 GVGVTEL 336
>gi|414161548|ref|ZP_11417807.1| DNA polymerase IV [Staphylococcus simulans ACS-120-V-Sch1]
gi|410875985|gb|EKS23899.1| DNA polymerase IV [Staphylococcus simulans ACS-120-V-Sch1]
Length = 356
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 15/245 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + IA+ +R ++E+ GLT SAG++ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASAIAQYIRNDIWEKTGLTASAGISYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G ++ + V + +L I G+GK T+ I+ + GI +++ +K L +F
Sbjct: 162 GMMII--NYQNVHEILMNLDIGGFPGVGKATKAIMHE-HGIYNGKDLYEKDERELIRIFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ G G+ R RKS+ +ERTF+ V +D+ +L K+ E++E + +
Sbjct: 219 KRGHGLY-EKARGRGTNIVKAHRIRKSVGTERTFTTDVNDDEEILL-KVRELSEKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRL 236
+ G+T+T+K+KT FE +R +L+ + + DI A L E+P+ RL
Sbjct: 277 SRIQKSGKTVTVKIKTHQFETLSRQRSLRDPVRNEIDIYNIAYTLYNELKDPEVPI--RL 334
Query: 237 IGLRV 241
IG+ V
Sbjct: 335 IGVTV 339
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 139/250 (55%), Gaps = 15/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+TE ++ G S IEIA+ ++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+
Sbjct: 110 SLDEAFLDVTEDKQQIG-SAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPD 168
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G F+ P+ ++ +F+ LP+ K G+GKVT ++ + G++T ++ +
Sbjct: 169 GLTFIGPS---SIESFMEKLPVEKFFGVGKVTADKMKRM-GLHTGADLKRLSENDLKTHF 224
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV----TEDKALLYRKLAEIAEMLSA 178
F+ + G+ R KS+ +E TF TE+ + +L +IA +
Sbjct: 225 GKVGAFYYRIVRGIDEREVQPHRETKSLGAEDTFPYDLTRTEE---MNAELEKIAVTVYE 281
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRL 236
+++ GL+GRT+TLK+K + F TR + + E IL+ A LL + P +RL
Sbjct: 282 RLKRYGLKGRTVTLKIKYSDFRQITRNQSFPVPVGDLEKILETAKQLLLSTEPEDKPVRL 341
Query: 237 IGLRVTQFNE 246
+G+ ++ F E
Sbjct: 342 LGISLSNFGE 351
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T E + EIA+ +R + E LT SAG+APN+ LAK+ SD KP+
Sbjct: 103 SLDEAYLDVTAPKGELR-TATEIAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFV+ R V F++ LP+ K+ G+GKV E L ++ GI T ++ +
Sbjct: 162 GQFVIRPHR--VEAFLTPLPVNKVPGVGKVMEAKLAEL-GIATVGDLRARSEAELEARFG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSA 178
S G+ + +SISSE TF+ ED AL R+LAE + +A
Sbjct: 219 SFGLRLYQRARGIDERPVESDQPVQSISSEDTFA--EDLALDALEPAIRQLAE--KTWNA 274
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LR 235
+ E + RT+ LKLKTA F + TR+ T ++ S + ++ A L + +LP S R
Sbjct: 275 TRRTERI-ARTVVLKLKTAQFRILTRSFTPEQPPESLQTLIDIALALRARVDLPASTRYR 333
Query: 236 LIGLRVTQFNE 246
L+G+ ++ F+E
Sbjct: 334 LVGVGLSGFHE 344
>gi|323345436|ref|ZP_08085659.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
gi|323093550|gb|EFZ36128.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
Length = 381
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+T ++ +IA+E++ + + LT SAG++ N+ LAK+ SD KP+
Sbjct: 118 SIDEAFLDVTHNSFNISLAQ-DIAKEIKDKIRKRLNLTASAGISYNKFLAKIASDYRKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
G V+ R + FIS LPI K G+G T I+ + N + LQ+ SL L F
Sbjct: 177 GLMVIHPHR--ALDFISKLPIEKFWGVGPKTAQIMHHIGIFNGAQ--LQEVSLHHLIETF 232
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
S + + + G+ + + RKS+ E TF + + A+L +L I LS
Sbjct: 233 GKS-GNIYYNFARGIDNRPVIASAIRKSVGCEHTFLEDIRLNSAILI-ELYHIVTELSGR 290
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRL 236
+ K GRTLTLK+K F TR+ T+ K + S +DIL A LL +E+ + S+RL
Sbjct: 291 ISKSKFNGRTLTLKVKFTDFTQITRSKTVHKVLISKDDILPLAKELL-SEVDLTKQSVRL 349
Query: 237 IGLRVTQFNED 247
+GL V+ D
Sbjct: 350 LGLCVSNLYND 360
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 136/245 (55%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G F+LP+ F+ LPI K G+GK + L G+ T E++L + L +
Sbjct: 172 KGLTFILPDQ---AQDFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDM 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSAD 179
F D + G+ ++ R RKSI SE+T+ + ++A + ++++ + + A
Sbjct: 228 FGRFGYDLYRK-ARGINASPVKPNRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVAS 286
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLI 237
++K G+T+ LK++ A FE T+ +TL++Y + I + A + E +RL+
Sbjct: 287 LEKNKKVGKTIVLKVRYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLL 346
Query: 238 GLRVT 242
G+ VT
Sbjct: 347 GVTVT 351
>gi|403051089|ref|ZP_10905573.1| DNA polymerase IV [Acinetobacter bereziniae LMG 1003]
Length = 351
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE S E+AE +R ++++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLFNIP-SATEVAERIRADIFQQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G ++ + V FI L ++KI G+GKVT+ L+ + + T + LQK ++L F
Sbjct: 159 GICIIKPSQ--VQNFIQDLALKKIPGVGKVTQEKLKSL-NLETLGD-LQKIEENILIHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSA 178
FL G+ R R+ IS E TF E A+ + L +
Sbjct: 215 GKYGKQLFL-YAQGIDDRPVQAERQRQQISKETTFDDDFNLEQCAIYWDNLISRVWL--- 270
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLR 235
++K+ ++ R +T+KLK +F+V + + + + S +++ + +LL + ++P R
Sbjct: 271 SLEKKQMQARGVTVKLKLKNFQVLQHSKSFKTALKSPQEMTQVVQILLNEMQIPEHFQFR 330
Query: 236 LIGLRVTQFNE 246
LIG+ + Q +
Sbjct: 331 LIGVGLYQLTD 341
>gi|150019053|ref|YP_001311307.1| DNA polymerase IV [Clostridium beijerinckii NCIMB 8052]
gi|149905518|gb|ABR36351.1| DNA-directed DNA polymerase [Clostridium beijerinckii NCIMB 8052]
Length = 348
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 8/253 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE +LD+++ + GIE A ++ V++E GLT S G++ N+ LAK+ S+ NKP
Sbjct: 100 VSIDEGFLDLSQ---GKIKDGIEAARYIKNRVFKEVGLTLSIGISYNKFLAKLASEWNKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG + + + + F LPI K+ G+GKV+ L ++ GI EE+ + +
Sbjct: 157 NGIKEIRKEMIPDILF--PLPISKVHGLGKVSVAKLNNM-GIYYIEELYKMPKEFYIEYL 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
G+ R RKSI ERT T++K L + E + + +
Sbjct: 214 GKNGIEIYDRIRGIDGRKVELIRERKSIGKERTLKFDTKNKEELREYIKEFSFEIEEILN 273
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLR 240
++ + G+T+TLK KT FE TR+ TL YI + +I K A LL +E L +RLIG+
Sbjct: 274 RKNVSGKTVTLKFKTKDFENHTRSKTLNYYIGTQLEIYKVAEELLDSEQLKEEVRLIGVS 333
Query: 241 VTQFNEDKVRAPS 253
++ F E +V+ S
Sbjct: 334 ISSFKETEVQQMS 346
>gi|296117372|ref|ZP_06835962.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
gi|295976138|gb|EFG82926.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
Length = 397
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 128/242 (52%), Gaps = 7/242 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T RG S EIA E+R ++ E GL SAGV+ N+ LAK+ SD KP+
Sbjct: 121 SLDEAYLDVTHPLLPRG-SATEIAREIRATIRAETGLCASAGVSYNKFLAKLASDHRKPD 179
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +V+ A F++ LP+ + GIG T + GI+T ++ + A
Sbjct: 180 GLYVITPRHGA--EFVADLPVERFHGIGPATAARM-HALGIHTGRDLRARTLEDLARHFG 236
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
A F+ V G+ R RKS+ +ERTF + + + + ++ + + ++
Sbjct: 237 KVAAFYHGVARGVDHRPVESDRPRKSLGTERTFEHDLYEWSDMAAPMTDMCQRVWHGCER 296
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
L GRT+T+K+K F RA TL + +++++++ HA LL+ P +RL+G+
Sbjct: 297 RDLTGRTVTIKIKYNDFRQIVRASTLMQPVATAQELSAHALGLLRGCFPPERGVRLLGVV 356
Query: 241 VT 242
V+
Sbjct: 357 VS 358
>gi|332530928|ref|ZP_08406852.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
gi|332039616|gb|EGI76018.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
Length = 404
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 126/246 (51%), Gaps = 13/246 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D TEV + SG +A ++ S++E GLTCS GVAPN+LLAK+ S+ NKP
Sbjct: 158 GVDEVYIDFTEVPGGQRESGRTLARLIQKSIFEATGLTCSIGVAPNKLLAKMASEFNKPK 217
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAV 120
G V +D + I LP RKI GIG T+ L+ I+T E+ KG L+
Sbjct: 218 GISIVQVSD---LQEKIWPLPCRKINGIGPKTDEKLQ-ALSISTIGELAARSKGELV-ER 272
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEML 176
F S + G S+S E TF DKA L + E +
Sbjct: 273 FGRSYGAWLHEAAWGRDERPVVTESEPVSVSRETTFERDLHAVRDKAELAAIFTSLCERV 332
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
+AD+Q++G GRT+ +KL+ A F+ TR TL + + ++ I A + LK +L R
Sbjct: 333 AADLQRKGYEGRTIGVKLRYADFKSVTRDQTLDFHTADAQAIRHAAGLCLKRVDLQRRFR 392
Query: 236 LIGLRV 241
L+G+RV
Sbjct: 393 LLGVRV 398
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTQA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ ++ F++
Sbjct: 333 GVGLSGFSD 341
>gi|239814330|ref|YP_002943240.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
gi|239800907|gb|ACS17974.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
Length = 416
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 9/244 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ ++ + GLTCS GVAPN+L+AK+ S+ NKPN
Sbjct: 141 GVDEVYIDFTDVPGGQREGGRSLARLIQKAILDATGLTCSIGVAPNKLIAKMASEFNKPN 200
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFS 122
G V+ D + T I LP RK+ GIG + L+ FGI T ++ + L F
Sbjct: 201 GISVVYEDDL--QTRIWPLPCRKVNGIGPKADEKLKR-FGIETVGQLAARERDWLIQNFG 257
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
ST + V G + S+S E TF D+A L + E ++
Sbjct: 258 KSTGAWMHEVAWGRDNRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEKVAE 317
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLI 237
D+Q++G G+T+ +KL+ F++ TR T++++ + + I + + LK L LRL+
Sbjct: 318 DLQRKGYVGKTIGIKLRYDDFKIATRDQTIERHTADGKTIRQVGGLCLKRVPLDRPLRLL 377
Query: 238 GLRV 241
G+RV
Sbjct: 378 GVRV 381
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 140/262 (53%), Gaps = 39/262 (14%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T E + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+
Sbjct: 100 SLDEAYLDVTAPKGELA-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPD 158
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P+ V F++ LP+ K+ G+GKV + L ++ GI T ++ +
Sbjct: 159 GQFVIRPHQ---VDAFLTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLR----------T 204
Query: 123 HSTADF---FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYR 167
H A+ F S GL G+ + +SISSE TF+ ED AL R
Sbjct: 205 HGEAELEARFGSFGLRLYQRARGIDQRPVEADQQVQSISSEDTFA--EDLALDALEPAIR 262
Query: 168 KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL- 226
LAE + +A + E + RT+ LKLKTA F + TR+ T ++ S + + A L
Sbjct: 263 LLAE--KTWTATRRTERI-ARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALRQ 319
Query: 227 KAELPVS--LRLIGLRVTQFNE 246
+ +LP S RL+G+ + F+E
Sbjct: 320 RVDLPASTRYRLVGVGLAGFHE 341
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 105 SLDEAYLDVTENRKGMEIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPN 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + F+ +LP++K G+G T ++ GI T ++ K
Sbjct: 164 GQAVITPKNGPG---FVEALPVKKFHGVGPATAERMKQ-HGIETGLDLKSKSLAFLQQHF 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF D L + +L +AE + +
Sbjct: 220 GKSGPYFYGIARGIDERRVRPDRIRKSVGAEDTFIEDIDNLDLAKAELRPMAEKVWRYCE 279
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ G+T+T+K+K + F TR+ T+ S + IL+ A LL + P +RL+G+
Sbjct: 280 AHDITGKTITVKIKYSDFSQATRSKTVAGSFSDIDMILEIAETLLASVFPFKHPVRLLGI 339
Query: 240 RVTQFNEDK 248
++ N ++
Sbjct: 340 TLSSLNTEE 348
>gi|42521969|ref|NP_967349.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
gi|39574499|emb|CAE78003.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
Length = 356
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 133/262 (50%), Gaps = 19/262 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C + G S IA+E+R ++ E LT SAGVAPN+ LAK+ SD KPN
Sbjct: 101 SLDEAYLDVTD-CEQFGGSATLIAQEIRRLIFTELNLTASAGVAPNKFLAKIASDWKKPN 159
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P D V TF+ LP+ KI G+GKVT + D+ G+ TC ++ + L + +
Sbjct: 160 GQFVVRPQD---VETFVKDLPVEKIFGVGKVTAQKMHDL-GLRTCGDIQKYTVLELSHWF 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSAD 179
S A G+ RKS++ E T++ +D L + L + E
Sbjct: 216 GSRAAELYDFSRGIDHREVITEWERKSLTVEETYN--KDLPTLQDCLKTLPSLYEDFVRR 273
Query: 180 MQKEGLRGRT--LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLR 235
M + R L +KLK F + T ++ IS + +L KA V +R
Sbjct: 274 MDRGQYHDRIKGLVIKLKFFDF----KQTTHEEVISELPTLQDFERLLEKAWNRRGVPVR 329
Query: 236 LIGLRVTQFNEDKVRAPSDPTQ 257
L+GL V + K + SD +Q
Sbjct: 330 LVGLGVRLGTQKKFSSESDSSQ 351
>gi|409098882|ref|ZP_11218906.1| DNA-directed DNA polymerase [Pedobacter agri PB92]
Length = 366
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 146/251 (58%), Gaps = 15/251 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI S I+IA+ ++ ++ E LT SAGV+ N+ +AKV SD+NKP
Sbjct: 109 SLDEAYLDVTE--DKLGIGSAIDIAKSIKDAIKNELNLTASAGVSINKFVAKVASDMNKP 166
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCA 119
+G F+ P+ + F+ LP+ K G+GKVT ++ I+T ++ L + LL
Sbjct: 167 DGLTFIGPS---KIKAFMEKLPVEKFFGVGKVTAAKMK-AMQIHTGSDLKNLSESQLLSQ 222
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSA 178
F S F+ + G+ R KS+ +E T + T + ++++ L +I+E ++
Sbjct: 223 -FGKS-GKFYYKIVRGIDDRPVRANRETKSVGAEDTLAEDTNEDSVMHDLLKQISETVAK 280
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRL 236
++K L+G+T+TLK+K F++ TR+ + I +E+I A LL A + + +RL
Sbjct: 281 RLEKYQLKGKTVTLKIKFEDFKLITRSRSFPLAIHKAENIYAEAIKLLNDANIGSLKVRL 340
Query: 237 IGLRVTQFNED 247
+G+ +++F ++
Sbjct: 341 LGITLSRFYDE 351
>gi|218459031|ref|ZP_03499122.1| DNA polymerase IV [Rhizobium etli Kim 5]
Length = 300
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 16/260 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 46 SLDEAYLDVTDNLKGMEIA-TEIATEIRARIKQVTGLNASAGISYNKFLAKMASDLNKPN 104
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ +LP++K G+G T + + GI+T ++ KG L +
Sbjct: 105 GQAVITPKNGPA---FVEALPVKKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVE 158
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSAD 179
H + +F + G+ R RKS+ +E TFS R+ L + E +
Sbjct: 159 HFGKSGPYFHGIARGIDERQVKPDRVRKSVGAEDTFSKDLHAYEPAREGLQPLIEKVWGY 218
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 237
+ G+ +T+TLK+K A F TR+ T+ + + D+ + S+LL P +RL+
Sbjct: 219 CEANGIGAKTVTLKIKYADFNQITRSKTVPGLLPAITDLEEIISLLLAPIFPPPKGIRLL 278
Query: 238 GLRVTQFNEDKVRAPSDPTQ 257
G+ ++ RAP Q
Sbjct: 279 GITLSSLER---RAPGTEPQ 295
>gi|336394740|ref|ZP_08576139.1| DNA-damage-inducible protein P [Lactobacillus farciminis KCTC 3681]
Length = 337
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 139/252 (55%), Gaps = 17/252 (6%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
+ +LDEAYLD+T+ + + I+IA ++ + +E LTCS G++ N+ LAK+ SD K
Sbjct: 76 SVALDEAYLDVTK-NKLNETNTIKIANYIQQRIVKETNLTCSVGISYNKFLAKMASDYRK 134
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCA 119
P G+ ++ F+ +PI K GIGK + L ++ I T E++ L + L
Sbjct: 135 PFGRTIILGK--YAKEFLKPIPIEKFNGIGKAMQEKLHEM-DIYTGEDLQKLDQDKFLQR 191
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEML 176
F + V G+ R RKSI ERT++ VTE++ +YR+L +AE++
Sbjct: 192 -FGKMGYVIYKRVH-GIDDAPVEGHRARKSIGRERTYNRNLVTEEQ--IYRELDFLAELV 247
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--- 233
S D++K+ G+T+ LKL+ + FE T+ ++ Q Y+ + +I + A + +L V+
Sbjct: 248 SQDLKKKRQHGKTVVLKLRNSDFETITKRMSFQDYVQTKSEIYRVAKDIYD-KLKVTDKK 306
Query: 234 LRLIGLRVTQFN 245
+RL+G+ VT +
Sbjct: 307 IRLLGITVTNLD 318
>gi|436840478|ref|YP_007324856.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169384|emb|CCO22752.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 389
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 8/245 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAYLDIT + G ++A+ ++ +Y+ GLT S G+AP + LAK+ SD+NKP
Sbjct: 100 ASIDEAYLDITGTQKLFGPPR-KLAQSIKDDIYKTTGLTASVGIAPVKFLAKIASDLNKP 158
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG ++ P++ V F+ +LP+ KI G+GK L F + ++ +
Sbjct: 159 NGISIIEPHE---VEEFLKTLPVEKIPGVGKKALPRLH-AFSVKFAADLRKYSPEFWKER 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
G G+ T KS S+E TF D +L L + +E ++AD+
Sbjct: 215 FGERGLVLYEKGAGIDPTPVTLGGQMKSSSAENTFDDDVSDPHVLKTLLLKQSERIAADI 274
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGL 239
+++GL+GRT+TLK+K F TR+ TL S S I K LL E + +RLIG+
Sbjct: 275 RRKGLKGRTITLKIKFPDFRQITRSKTLDFRTSHSGTIYKTGCKLLDNEGRIGPVRLIGI 334
Query: 240 RVTQF 244
++ F
Sbjct: 335 GISNF 339
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 143/256 (55%), Gaps = 35/256 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + G+ S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTQ--NKLGLKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDYQKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAV 120
+G +LP D +TF+ LPI K G+GK + + EEM + G+ L AV
Sbjct: 172 HGLTLILPED---ALTFLKELPIAKFHGVGKKS---------VIKLEEMGIFTGADLLAV 219
Query: 121 FSHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFS--VTED---KALLYRK 168
+ D F G L G +N+P R RKSI SERT+ + E+ KA + +
Sbjct: 220 PEMTLIDHFGRFGFDLYRKARGISNSPVKANRIRKSIGSERTYGKLLYEEKDVKAEISKN 279
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
+ ++E+L ++ + G+TL LK++ A F T+ ++L++ I+ I + A + +
Sbjct: 280 ASRLSELLKSNQKS----GKTLVLKVRYADFITLTKRISLEEAINDFTTIEQVAHQIYDS 335
Query: 229 --ELPVSLRLIGLRVT 242
E +RL+GL +T
Sbjct: 336 LEESEAGIRLLGLTMT 351
>gi|313674610|ref|YP_004052606.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
gi|312941308|gb|ADR20498.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
Length = 359
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 137/252 (54%), Gaps = 13/252 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GIS +IA E++ ++ E GLT SAGV+ N+ LAK+ SD KP
Sbjct: 105 SLDEAYLDVTE--NKMGISTATDIAIEIKKAIKSEIGLTASAGVSINKFLAKIASDYRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G F++ + V++FI LPI K G+GK T + + I T + LQ SL L
Sbjct: 163 DGIFIIKPHQ--VLSFIEQLPIEKFFGVGKKTAEKMHRL-NIKTGAD-LQAKSLKELVKH 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSAD 179
F +F SV G R RKS+ +E TFS++ + K+ + L IAE
Sbjct: 219 FG-KQGRYFYSVSRGEDYRKVNPNRIRKSVGAENTFSISLKTKSAILEALQPIAEKCWKR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIG 238
++ T+TLK+K F+ TR+ + ++ I S+ + L+ + EL S+RL+G
Sbjct: 278 YKQSDANAHTITLKVKFDDFKQITRSKSFEEAIYSAAIFDQGLESLMDSFELYQSVRLVG 337
Query: 239 LRVTQFN-EDKV 249
++ F E+K+
Sbjct: 338 CSLSNFEIEEKI 349
>gi|365886913|ref|ZP_09425808.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
gi|365337547|emb|CCD98339.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
Length = 368
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD
Sbjct: 114 SLDEAYLDVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDH 168
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ+V+ + A F+ SLP+ + GIG T + GI+T ++ +
Sbjct: 169 RKPNGQYVISPEMGA--AFVESLPVGRFHGIGPATAAKFNGL-GIHTGLDIRNQTLPFLQ 225
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 177
++ + G+ R RKSI +E TF+ +TE + + +L + + +
Sbjct: 226 HHFGKAGSYYYWISRGIDHRPVRANRIRKSIGAENTFATDLTEFEPMAA-ELQPLIDKVW 284
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ G RGRT+TL++K A F++ TR+ ++ +SS ++ + LL+AE+PV +R
Sbjct: 285 RHCEATGNRGRTVTLRVKFADFDMITRSRSVATAVSSRAELEHLSLALLQAEMPVKKPVR 344
Query: 236 LIGLRVTQFNE 246
L+G+ ++ E
Sbjct: 345 LLGVSLSSLRE 355
>gi|281422569|ref|ZP_06253568.1| DNA-directed DNA polymerase [Prevotella copri DSM 18205]
gi|281403393|gb|EFB34073.1| DNA-directed DNA polymerase [Prevotella copri DSM 18205]
Length = 387
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 24/259 (9%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEA+LD+T+ ++GI ++IA+E++T + E GLT SAG++ + LAKV SD KP
Sbjct: 117 SIDEAFLDVTQ--NKKGIELAVDIAKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKP 174
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G + D+ FI+ LPI G+GK T + + N + L VF
Sbjct: 175 DGICTIHPDK--AYDFIAQLPIEDFWGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFG 232
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ- 181
+ F G+ R RKS+ E+TF ED +Y K A I E+ ++
Sbjct: 233 KA-GHIFYDFARGIDERPVITYRERKSVGCEQTF--LED---IYLKTAVIIELYHTVLEL 286
Query: 182 -----KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-----AELP 231
K G GRTLTLK+K A F TR+++ +K + +DIL A LLK + P
Sbjct: 287 LERIAKSGFEGRTLTLKVKFADFTQITRSISQEKVLKKKDDILPLAKRLLKQVDYSSAHP 346
Query: 232 VSLRLIGLRVTQFNEDKVR 250
+ RL+GL V+ + ++ R
Sbjct: 347 I--RLLGLSVSNASSEEAR 363
>gi|288803159|ref|ZP_06408594.1| ATP-NAD kinase [Prevotella melaninogenica D18]
gi|288334420|gb|EFC72860.1| ATP-NAD kinase [Prevotella melaninogenica D18]
Length = 366
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 137/250 (54%), Gaps = 23/250 (9%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD++E ++GI ++IA+E++ ++E LT SAG++ N+LLAK+ SD+ KP
Sbjct: 100 SLDEAFLDVSE--NKKGIDLAVDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
NG F + DR + FI LP+ K+ G+G T + + G+ T E++ + L VF
Sbjct: 158 NGIFTVHPDR--ALDFIGKLPVEKLWGVGPKTAERMHGM-GVFTGEQLREISREHLVQVF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKAL--LYRKLAEIAEML 176
+ + + G+ + + RKS+ ERTF E K + LY E+ E +
Sbjct: 215 G-KMGNVYYNFSRGIDNRPVIVSYERKSVGCERTFLEDLHIESKIIIELYHITLELVERI 273
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPV 232
A + +GRTLTLKLK + TR++T K + + ++IL A LLK P+
Sbjct: 274 KA----KDFKGRTLTLKLKWDATTQITRSLTQDKILRTKDNILPLAKQLLKDTDYHNRPI 329
Query: 233 SLRLIGLRVT 242
RL+GL V+
Sbjct: 330 --RLMGLSVS 337
>gi|414342328|ref|YP_006983849.1| DNA polymerase IV [Gluconobacter oxydans H24]
gi|411027663|gb|AFW00918.1| DNA polymerase IV [Gluconobacter oxydans H24]
Length = 379
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 133/262 (50%), Gaps = 11/262 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ G S +AE +R + +E GLT SAGV+ NR LAK+ SD KP+
Sbjct: 102 SLDEAYLDLTDYLGAYG-SATLVAESIRADIRKETGLTASAGVSYNRFLAKLASDYRKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVF 121
G FV+ RM F++ L + + GIG T +R GI T + L+K L L F
Sbjct: 161 GLFVI-TPRMGP-DFVAGLAVDQFHGIGPATARKMR-ALGIETGAD-LRKLDLPTLTRHF 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADM 180
S A F+ + G+ R RKS+ +E+T+ S +D+ L IA L
Sbjct: 217 GKS-ALFYHGISRGIDERPVVVNRERKSLGTEQTYLSDLKDENAARAALGLIATKLWLQA 275
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIG 238
Q++ + GRT+TLK+K A F TRA TL ++S + L P++ +RL+G
Sbjct: 276 QRKQITGRTVTLKVKYADFRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLG 335
Query: 239 LRVTQFNEDKVRAPSDPTQKTL 260
L ++ P P Q L
Sbjct: 336 LTMSSLAGTDDATPDSPPQMQL 357
>gi|329850033|ref|ZP_08264879.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
gi|328841944|gb|EGF91514.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
Length = 365
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 11/262 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S +IAE++R + + LT SAGV+ N+ LAK+ SD NKP+
Sbjct: 108 SLDEAYLDVTENLKGM-TSATQIAEDIRARIRDVTQLTASAGVSYNKFLAKIASDQNKPD 166
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ + F++SLP++K G+G T + + G+ T ++ +
Sbjct: 167 GLFVIKPSQGP--DFVASLPVKKFYGVGPATASKM-NRLGLYTGMDIRNQTLAFLQKHFG 223
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADM 180
+ ++ +V G+ R RKS+ E TF ED + L + +L I + + +
Sbjct: 224 ISGSYYYNVSRGICHRQVKPDRERKSVGGENTF--FEDVSTLDSAWAQLLPILDKVWRHI 281
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ +G++GRT+TLK+K A F TR+ T ++ + + + LL+ PV ++RL+G
Sbjct: 282 EGKGIKGRTVTLKVKYADFTTITRSKTFAAAVADRDTMTRIGRELLEGVFPVVKNIRLLG 341
Query: 239 LRVTQFNEDKVRAPSDPTQKTL 260
+ ++ +ED+ P D Q +L
Sbjct: 342 ISLSSLSEDEADEPEDMRQLSL 363
>gi|22095624|sp|Q92XH8.2|DPO42_RHIME RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
Length = 354
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 100 SLDEAYLDVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPD 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 159 GLFVITPKHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 215
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 216 KSGPYFYWIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 275
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+
Sbjct: 276 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVT 335
Query: 241 VTQFN 245
++ +
Sbjct: 336 LSSLD 340
>gi|146338544|ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278]
gi|146191350|emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 278]
Length = 368
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 35/260 (13%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD
Sbjct: 114 SLDEAYLDVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDH 168
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ+V+ + A F+ LP+ + GIG T + GI+T ++ +
Sbjct: 169 RKPNGQYVISPETGA--AFVEGLPVGRFHGIGPATAAKF-NALGIHTGLDIRNQTLPFLQ 225
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
++ + G+ R RKSI +E TF+ L E E ++A+
Sbjct: 226 QHFGKAGSYYYWISRGIDHRPVRANRIRKSIGAENTFAT---------DLIEF-EPMAAE 275
Query: 180 MQK-----------EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
+Q G RGRT+TLK+K A F+V TR+ ++ +SS ++ + + LL+A
Sbjct: 276 LQPLIDKVWRHCDATGNRGRTVTLKVKFADFDVITRSRSVATAVSSRAELERLSLALLQA 335
Query: 229 ELPV--SLRLIGLRVTQFNE 246
ELP+ +RL+G+ ++ E
Sbjct: 336 ELPLPKPVRLLGVSLSSLQE 355
>gi|359687051|ref|ZP_09257052.1| DNA polymerase IV [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751085|ref|ZP_13307371.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
gi|418757063|ref|ZP_13313251.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384116734|gb|EIE02991.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273688|gb|EJZ41008.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
Length = 367
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 19/251 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T+ ++ I ++A+E+R ++EE LT SAGV+ N+ LAK+ +D NKP
Sbjct: 102 SLDEAFLDVTQ--NKKNIPYATQVAKEIREKIFEETQLTASAGVSINKFLAKIATDQNKP 159
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
NG ++ ++ V FI SL + GIGKVT + GI +++ +K +L F
Sbjct: 160 NGMTIVRPEQ--VEKFIESLDVSVFPGIGKVTLKKMH-ALGIKKGKDLKEKSLEMLDQNF 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S +F +V GL R RKS+ +E TF+ E+ + ++R+L++IAE L +
Sbjct: 217 GKS-GRWFYAVCRGLDDRPVEPFRERKSLGAESTFAKDLENSSEIFRELSDIAEELERRL 275
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--------KAELPV 232
++ G+T+TLK+K + F +TR++T ++ + S LL KA P+
Sbjct: 276 LQKPFPGKTITLKVKFSDFTQKTRSITEDYSYLDKNELYRIGSKLLEEFILGSGKAIFPI 335
Query: 233 SLRLIGLRVTQ 243
RL+GL ++
Sbjct: 336 --RLLGLSLSH 344
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 115 SLDEAYLDVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPD 173
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 174 GLFVITPKHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 230
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 231 KSGPYFYWIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 290
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+
Sbjct: 291 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVT 350
Query: 241 VTQFN 245
++ +
Sbjct: 351 LSSLD 355
>gi|317504724|ref|ZP_07962685.1| NAD(+) kinase [Prevotella salivae DSM 15606]
gi|315664162|gb|EFV03868.1| NAD(+) kinase [Prevotella salivae DSM 15606]
Length = 372
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 18/248 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T ++GI ++IA+E++ + +E LT SAG++ N+LLAK+ SD KP
Sbjct: 100 SLDEAFLDVT--TNKKGIPLAVDIAKEIKQRIKDELNLTASAGISYNKLLAKIASDYRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ M F++ LP+ + G+G T + + N + L+ SL L V
Sbjct: 158 DGICTIHPDK--AMDFVAKLPVEDLWGVGPKTALRMHRMGIFNALQ--LRACSLEHLTMV 213
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LS 177
F + F+ + G+ R RKS+ E TF ED +L L E+ + LS
Sbjct: 214 FGKAGPSFY-NYARGIDERPVITKRTRKSVGCEHTF--LEDISLPSALLIELYHLVVELS 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSL 234
A ++K G+TLTLK+K A F+ TR++T K + + ++IL A LL+ + ++
Sbjct: 271 ARIKKGNFEGKTLTLKIKYADFKQITRSITSHKLLKTKDEILPLAKRLLQMISYDNAHAI 330
Query: 235 RLIGLRVT 242
RL+GL V+
Sbjct: 331 RLMGLSVS 338
>gi|373456049|ref|ZP_09547856.1| hypothetical protein HMPREF9453_02025 [Dialister succinatiphilus
YIT 11850]
gi|371934252|gb|EHO62054.1| hypothetical protein HMPREF9453_02025 [Dialister succinatiphilus
YIT 11850]
Length = 385
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 6/244 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LDI+ + + G I ++ + +E L S G+APN+ LAK+ SD++KP+
Sbjct: 101 SLDEAFLDISAMGSQYPTLG-AIGRAIKKEILKETELVASVGIAPNKFLAKMASDMDKPD 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G F++P + + LP+R++ G+GKVTE L G T ++ A
Sbjct: 160 GLFIIPYGKEK--DILRPLPVRRLWGVGKVTEGRLVKA-GFRTIGDIQDVSVEALASVLG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ + G+ R KSI E T+ D +++ R++A +++++ ++K
Sbjct: 217 NQGGLLKRLSFGVDDRPVEAEREIKSIGDESTYEKDITDPSVIDREIAIHSDIVAQRLRK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRV 241
+GL RT+TLK++ ASF TR ++ ++ S E+I HA LL K L +RLIG+
Sbjct: 277 QGLMARTVTLKIRFASFRTVTRTLSFEEGTSLQEEIYHHAMTLLQKIPLTEGVRLIGVTA 336
Query: 242 TQFN 245
++
Sbjct: 337 SRLG 340
>gi|445419736|ref|ZP_21435380.1| ImpB/MucB/SamB family protein [Acinetobacter sp. WC-743]
gi|444759552|gb|ELW84019.1| ImpB/MucB/SamB family protein [Acinetobacter sp. WC-743]
Length = 351
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE S E+AE +R ++++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLLNIP-SATEVAERIRADIFQQTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G ++ + V FI L ++KI G+GKVT+ L+ + + T + LQK ++L F
Sbjct: 159 GICIIRPSQ--VQNFIQDLALKKIPGVGKVTQEKLKSL-NLETLGD-LQKIEENILIHHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSA 178
FL G+ R R+ IS E TF E A+ + L +
Sbjct: 215 GKYGKQLFL-YAQGIDDRPVQAERQRQQISKETTFDDDFNLEQCAIYWDNLISRVWL--- 270
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLR 235
++K+ ++ R +T+KLK +F+V + + + + S +++ + +LL + ++P R
Sbjct: 271 SLEKKQMQARGVTVKLKLKNFQVLQHSKSFKTALKSPQEMTQVVQILLNEMQIPEHFQFR 330
Query: 236 LIGLRVTQFNE 246
LIG+ + Q +
Sbjct: 331 LIGVGLYQLTD 341
>gi|291514181|emb|CBK63391.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes shahii WAL 8301]
Length = 356
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 13/242 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD++ V S +A E++ + E GLT SAG++ N++LAK+ SD KP+
Sbjct: 102 SLDEAFLDVSHVR-----SATLVAREIKAHILAETGLTASAGISVNKMLAKIASDYRKPD 156
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
G F +P +R + F++ LP+ + GIG+VT + + GI T ++ L + L F
Sbjct: 157 GLFTIPPER--IEEFVAGLPVERFFGIGEVTAEKMHRL-GIRTGADLRLWNEAALVQQFG 213
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ ++ G+ R RKS+ +E TF+ T+D+ L +L+ + E + +
Sbjct: 214 KAGHSYY-GYARGIDEREVTPNRVRKSLGAETTFAEDTDDRERLRLELSAVREEVWNRVM 272
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGL 239
+ RG+T+ LKLK +F TR+ TL + S+E + + + LL A +RLIGL
Sbjct: 273 RHEFRGKTVVLKLKFDNFRQITRSKTLFTPVDSAETLRRVSEELLAAADFHGRKIRLIGL 332
Query: 240 RV 241
V
Sbjct: 333 TV 334
>gi|381184017|ref|ZP_09892694.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
gi|380316085|gb|EIA19527.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
Length = 356
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S IA E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMASATLIAREIQYAIYHELGLTSSAGVSYNKFIAKIASDYKKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V+P ++ TF+ S+PI K G+GKVT + + GI T +++
Sbjct: 162 AGLTVIPPEKAE--TFLESIPIDKFYGVGKVTSEKMHRL-GIKTGKDLKAWSEWDLIREF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
H + G + R RKS+ E TF D+ +L + L +E + +
Sbjct: 219 HKHGYYLYRHVRGRSNNIVNPHRDRKSVGKETTFERNVVDELVLEKSLMRFSEKIETRLL 278
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
K G+T+ LKL+ + F T+ +TL Y+ + I + LL S +RLIGL
Sbjct: 279 KIQKHGKTVVLKLRYSDFTTITKRMTLTNYVHDRQMIYEAGLALLNEVYNGSEAIRLIGL 338
Query: 240 RVTQF 244
VT
Sbjct: 339 TVTNL 343
>gi|373459036|ref|ZP_09550803.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
gi|371720700|gb|EHO42471.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
Length = 392
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 135/251 (53%), Gaps = 7/251 (2%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEA+LD+T R G G IA++++ + E+ L+ S GVAPN+ LAK+ SD+ KP
Sbjct: 104 VSIDEAFLDVTGSVRLFG-DGPTIAQKIKQRIKEKERLSASIGVAPNKYLAKIASDLQKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ D+ + TF+ L I ++ G G+ T+ ILR + GINT ++ + +
Sbjct: 163 DGLVVVETDQ--IETFLWPLDISRLWGAGERTQQILRKM-GINTIGDLARFPPQVLKQKL 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
S + F + G KS+S+E TF +D ++ ++L +AE + ++
Sbjct: 220 GSAGEHFYRLAHGFDERPVITREEVKSVSNEHTFGKDVDDMDVVRKQLVYLAEKVGYRLR 279
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
K+GL+G+T+ LKL+ +F TR +T+ + + I+ A L + +RL+G+
Sbjct: 280 KKGLKGKTIHLKLRYDNFSTITRNMTISPPTNQTRQIVDVALDLFEKNYISGRKVRLVGV 339
Query: 240 RVTQFNEDKVR 250
V+ F+ R
Sbjct: 340 GVSGFDTQAAR 350
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 25/255 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S A+ +R ++E GLT SAG+APN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVT-APRIASSSATATAQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM---------LQKG 114
GQ+V+ + V F++ L + +I G+GKV E L ++ G+ T ++ L+ G
Sbjct: 159 GQYVIKPAQ--VEAFLTPLKVGRIPGVGKVAERKLAEL-GVATVGDLRRFTLDELQLRFG 215
Query: 115 SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAE 174
A++ + G+ + +SIS+E TF V A L +A +A+
Sbjct: 216 RFGAALYRRAR---------GIDERPVQPDQQVQSISAEDTFEVDLPLAELGPAIARMAD 266
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV- 232
K G T+ LKLKTA F + TR+ T + SS A L + +LPV
Sbjct: 267 KAWRATGKTARIGHTVVLKLKTAQFRILTRSFTPEAPPSSLAQFTAIALALRDRVDLPVD 326
Query: 233 -SLRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 327 TRYRLVGVGLAGFRE 341
>gi|453331644|dbj|GAC86558.1| DNA polymerase IV [Gluconobacter thailandicus NBRC 3255]
Length = 379
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 7/239 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ G S +AE +RT + +E GLT SAGV+ NR LAK+ SD KP+
Sbjct: 102 SLDEAYLDLTDYLGAYG-SATLVAESIRTDIRKETGLTASAGVSYNRFLAKLASDYRKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ RM F++ L + + GIG T +R GI T ++ + +
Sbjct: 161 GLFVI-TPRMGP-DFVAGLAVDQFHGIGPATARKMR-ALGIETGADLRKLDLPTLTRYFG 217
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQK 182
+A F+ + G+ R RKS+ +E+T+ S +D+ L IA L Q+
Sbjct: 218 KSALFYHGISRGIDERPVVVNRERKSLGTEQTYLSDLKDENAARTALGLIATKLWLQAQR 277
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
+ + GRT+TLK+K A F TRA TL ++S + L P++ +RL+GL
Sbjct: 278 KQITGRTVTLKVKYADFRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGL 336
>gi|412986578|emb|CCO15004.1| DNA polymerase kappa [Bathycoccus prasinos]
Length = 809
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 137/271 (50%), Gaps = 31/271 (11%)
Query: 1 MAASLDEAYLDITEVCR--ERGISGIEIAEEL-------RTSVYEEAGLTCSAGVAPNRL 51
+A S DE YL++TE + ER ++ E ++E+ R V+E+A LT S G P+
Sbjct: 406 LAPSSDEVYLNMTEYFKFDEREMTPEEKSDEMEKTMKKIREEVFEKAKLTVSGGGGPSMR 465
Query: 52 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 111
LAK+CSD+NKPNGQ +L ++ F+++L IRKIGGIG E L + F + TC +++
Sbjct: 466 LAKICSDVNKPNGQKILTFTSEDILKFLNTLSIRKIGGIGASMERYL-NAFDVKTCGDII 524
Query: 112 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ-----ARFRKSISSERTFSVTEDKA-LL 165
+ L V + F SV +G+G P A R+ +S R++ K L
Sbjct: 525 THKAKLAKVCHATAYTFLFSVAMGVGMETVPPPIQDGAPGRRGVSMNRSWYPGISKYEYL 584
Query: 166 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK-----------YISS 214
++ L A+ +S ++++ R + + TA F+ + VT Q+ +I +
Sbjct: 585 FKILESFAQGVSKEVKRLNFIPRQIMI---TAKFQHNFQQVTRQRRLPRASQSYKDWIPT 641
Query: 215 SEDILKHASVLLKAEL-PVSLRLIGLRVTQF 244
+D+ + P+ +R +G+RV+ F
Sbjct: 642 VKDLFDKLYHEFDGDTKPLDVRRLGVRVSCF 672
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 115 SLDEAYLDVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPD 173
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 174 GLFVITPKHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 230
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 231 KSGPYFYWIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 290
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+
Sbjct: 291 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVT 350
Query: 241 VTQFN 245
++ +
Sbjct: 351 LSSLD 355
>gi|299142010|ref|ZP_07035144.1| ATP-NAD kinase [Prevotella oris C735]
gi|298576472|gb|EFI48344.1| ATP-NAD kinase [Prevotella oris C735]
Length = 366
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 142/259 (54%), Gaps = 19/259 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T ++GIS ++IA+E++ + +E LT SAG++ N+LLAK+ SD KP
Sbjct: 100 SLDEAFLDVT--VNKKGISLAVDIAKEIKQRIKDELRLTASAGISYNKLLAKIASDYRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ M F++ LP+ + G+G T + + N + L+ SL L V
Sbjct: 158 DGLCTIHPDK--AMNFVAKLPVEDLWGVGPKTARRMHRMGIFNALQ--LRACSLEHLKMV 213
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LS 177
F S F+ + G+ R RKS+ E+TF ED +L L E+ + L+
Sbjct: 214 FGKSGPAFY-NYARGIDERPVVVERTRKSVGCEQTF--LEDISLPSALLIELYHLVLELT 270
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELPVSL 234
++K G+TLTLK+K A F+ TR++T +K + + +DIL A LL + ++
Sbjct: 271 TRIEKGNFEGKTLTLKIKYADFKQITRSITGRKLLKTKDDILPLAKRLLHLVHYDNAHAI 330
Query: 235 RLIGLRVTQ-FNEDKVRAP 252
RL+GL V+ ED AP
Sbjct: 331 RLMGLSVSNPGGEDGDAAP 349
>gi|182679061|ref|YP_001833207.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634944|gb|ACB95718.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 373
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 11/253 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R S EIAE++R + E GLT SAGV+ N+ LAK+ SD NKPN
Sbjct: 114 SLDEAYLDVTSNLRNVA-SATEIAEQIRARILAETGLTASAGVSYNKFLAKLASDHNKPN 172
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ +M F+ +LP+ K GIG T + + I T ++ +
Sbjct: 173 GLFVI-TPKMGP-GFVEALPVSKFHGIGPATAAKMEKL-AIATGRDLKARPLAFLQQHFG 229
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADM 180
++ + G+ R RKSI +E TF++ T + A Y L I E +
Sbjct: 230 KAGTYYYWIARGVDERPVRPDRERKSIGAENTFAIDLYTFEAA--YAALTPIMEKVWRSR 287
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIG 238
+ LR RT+TLK+K A F+ TR+ T + I + + + LL P + +RL+G
Sbjct: 288 EMMNLRARTVTLKVKYADFQQITRSRTDDEGIVTRVLFEERVASLLAPLFPTTKGIRLLG 347
Query: 239 LRVTQFNEDKVRA 251
+ ++ F + + A
Sbjct: 348 VTLSAFAKPEPEA 360
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 104 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 162 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 214
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 215 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEE 273
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVS 233
+ ++ G+TLTLK+K F TR+++L+ YI DI + LL+ E+
Sbjct: 274 VCHRLKSSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQ 333
Query: 234 LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 334 IRLLGVTISNLSDKK 348
>gi|78049296|ref|YP_365471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325924733|ref|ZP_08186170.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346726392|ref|YP_004853061.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
gi|123584151|sp|Q3BP42.1|DPO4_XANC5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|78037726|emb|CAJ25471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325544825|gb|EGD16171.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346651139|gb|AEO43763.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
Length = 359
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ ++ F++
Sbjct: 333 GVGLSGFSD 341
>gi|424033801|ref|ZP_17773212.1| DNA polymerase IV [Vibrio cholerae HENC-01]
gi|408873914|gb|EKM13097.1| DNA polymerase IV [Vibrio cholerae HENC-01]
Length = 342
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 133/262 (50%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 93 SLDEAYLDVTDSTACRG-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPN 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V + LP+ KI G+GKV+ L G CE++ L F
Sbjct: 152 GQFVIPPEK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ R RKS+ ERTFS V EDK LY +L +
Sbjct: 209 RQGASLW-KRSHGIDDREVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEK 265
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E S D + K+G +KLK A F++ T + Q + +++L+ +LK
Sbjct: 266 RLEKASPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKELLRD---ILKR 315
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V E + R
Sbjct: 316 QNGREIRLLGLSVMLKPEQQAR 337
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 22/252 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPN
Sbjct: 104 SLDEAYLDVTYTEAFNG-SATLIAQAIKREILQETRLTASAGVSYNKFLAKIASDMDKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G +V+ P A F+++LP+ K GIG TE + ++ GI+T +++ +K + L F
Sbjct: 163 GLYVIRPEQGEA---FVAALPVGKFHGIGPATETKMHNL-GIHTGKDLREKSLTELTERF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEML 176
+ ++ ++ + R RKS+ E TF S+ E L KL ++AE +
Sbjct: 219 GKA-GQYYYNIARAIDERPVRSQRIRKSLGKETTFAEDIHSIPE----LTAKLLDLAERV 273
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPV-S 233
+ K+ L+ RT+T+K+K A F+ TRA + + I ++ LK LL K E +
Sbjct: 274 FESLVKQNLKARTITVKVKYADFQQVTRAHSTEHIIQLTD--LKQIIPLLLEKTEAGIKP 331
Query: 234 LRLIGLRVTQFN 245
LRL+GL ++ F+
Sbjct: 332 LRLVGLSMSGFD 343
>gi|240142517|ref|YP_002967028.1| DNA polymerase IV [Methylobacterium extorquens AM1]
gi|240012462|gb|ACS43687.1| DNA polymerase IV [Methylobacterium extorquens AM1]
Length = 408
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 141/272 (51%), Gaps = 33/272 (12%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G + EIA E++T++ E LT SAGV+ + LAK+ SD KP
Sbjct: 155 SLDEAYLDVTENLK--GFETATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKP 212
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
+G FV+ RM F+ +LP+ + GIG TE + + GI T ++ K + L F
Sbjct: 213 DGLFVI-TPRMGP-KFVLTLPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHF 269
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM------ 175
S A +F + G+ R RKS+ +E TF R LA I EM
Sbjct: 270 GKSGA-YFHGIARGVDHRPVRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQP 319
Query: 176 ----LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ + G+RGRT+TLK+K + FE TR+ + + S +D+ A+ LL+ P
Sbjct: 320 IVDKVWSRCAATGVRGRTVTLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFP 379
Query: 232 VSL--RLIGLRVTQFNEDKVRAPSDPTQKTLT 261
+ L RL+G+ ++ + ++ +P Q +L
Sbjct: 380 MRLGVRLLGVTMSGLDNER----EEPRQLSLA 407
>gi|374586349|ref|ZP_09659441.1| DNA polymerase IV [Leptonema illini DSM 21528]
gi|373875210|gb|EHQ07204.1| DNA polymerase IV [Leptonema illini DSM 21528]
Length = 372
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 15/248 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + + IA +++ + EE GLT SAGVA + LAK+ S +NKP+
Sbjct: 121 SLDEAYLDVTS-NKFQIPYAVTIARQIKARIKEETGLTASAGVASGKFLAKIASGMNKPD 179
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G +LP+ +A F+ +LP+ G+GKVTE +++ GI T ++ + S L ++F
Sbjct: 180 GLTVILPDQAIA---FLEALPVGDFFGVGKVTEKKMKE-HGIFTGADLKSRSLSELVSLF 235
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
S + V G+ R RKS+ E TFS D L ++L ++AE LS +
Sbjct: 236 GKSGMHLYRLV-RGIDEAPVIPFRERKSVGIEDTFSADVSDVVELMQRLRQLAEGLSFRL 294
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 236
+ G GRT+T+K+K A FE +++ T +++ + + LL+ L PV RL
Sbjct: 295 ARHGKPGRTITVKVKYADFETHSKSETRSSIPVAADALHQMGRSLLEQLLEEGRPV--RL 352
Query: 237 IGLRVTQF 244
+GL V F
Sbjct: 353 LGLSVHGF 360
>gi|425743778|ref|ZP_18861848.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii WC-323]
gi|425493100|gb|EKU59347.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii WC-323]
Length = 355
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 11/247 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPN
Sbjct: 104 SLDEAYLDVTENLKNIP-SATEVAAHIRADIFATTGLTASAGVAPNKFLAKIASDWNKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVF 121
G FV+ + V+ FI L + KI G+GKVT+ L + ++T + LQK ++L F
Sbjct: 163 GLFVIKPHQ--VLKFIQDLALSKIPGVGKVTQERLSQL-NLHTLGD-LQKIEENVLVHHF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+L G+ R R+ IS E TF +AE + +
Sbjct: 219 GKYGKQLYL-YAQGVDHRPVKAERERQQISKEITFDDDYTLEQCRHAWQPLAEQVWRSLN 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELPVSLRLIG 238
K+ L R +++KLK +F+V + + ++ + S +D+ + LL + RL+G
Sbjct: 278 KKQLSARGVSVKLKLKNFQVLQHSKSFKQALQSQQDLAQVVFQLLNEMHIDPAFQFRLVG 337
Query: 239 LRVTQFN 245
+ V Q
Sbjct: 338 VGVYQLQ 344
>gi|374312136|ref|YP_005058566.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
gi|358754146|gb|AEU37536.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
Length = 382
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 139/260 (53%), Gaps = 23/260 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V + + ++A +R + EE LT SAGVAPN+ LAK+ SD KPN
Sbjct: 120 SLDEAYLDVT-VNKNGLPTATKVASAIRQQIREELSLTASAGVAPNKFLAKIASDWRKPN 178
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P D + TF+ LP+ +I G+GKVTE L V GI T ++ + A
Sbjct: 179 GLFVIQPGD---LDTFLPPLPVGRIPGVGKVTETRLNQV-GIQTVGDL---RNFELATLE 231
Query: 123 HSTADFFLSVG-LGLGSTNTPQA--RFRKSISSERTF----SVTEDKALLYRKLAEIAEM 175
+ L + L G + P R KSIS+E TF ++E + L+ R +AE
Sbjct: 232 AQFGRYGLRLHELARGIDHNPVVPDRPTKSISAEDTFQRDIPLSETEELIRR----LAEK 287
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS- 233
+ ++E RT+ LKLKT+ F + TR+ T +S E++ A S+ + +L +
Sbjct: 288 VWTASRRESRMARTVVLKLKTSEFNILTRSHTPLVPPASCEELTTIALSLRERIDLAATQ 347
Query: 234 -LRLIGLRVTQFNEDKVRAP 252
RL+G+ ++ F E + P
Sbjct: 348 RFRLVGVGLSNFREQESPPP 367
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 105 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 163 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 215
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 216 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEE 274
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVS 233
+ ++ G+TLTLK+K F TR+++L+ YI DI + LL+ E+
Sbjct: 275 VCHRLKSSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQ 334
Query: 234 LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 335 IRLLGVTISNLSDKK 349
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 134/238 (56%), Gaps = 12/238 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI S +IA E+R + +E GLT SAGV+ N+ +AK+ SD NKP
Sbjct: 105 SLDEAYLDVTDNLK--GIESATQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
NGQ V+P + F++ LPIR+ G+G VT + + GI T ++ + S L F
Sbjct: 163 NGQCVIPPK--SGEQFVAGLPIRRFYGVGPVTAKKM-ERLGILTGADLKKADLSWLRQNF 219
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 179
+S AD++ + G R RKS+ ERT+S + E + +L + ++ +L
Sbjct: 220 GNS-ADYYYAAARGKDDRIVQPNRIRKSVGVERTYSKDLFEKEEIL-TETEKLITLLWER 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 237
+++ G T+ LK+K + F+ TR+ TL+ I+ E + A +LL LP ++ I
Sbjct: 278 IERANAVGHTIVLKVKFSDFKQITRSHTLEHSITEIEHLDVSAQLLL-GHLPRPIKPI 334
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 27/260 (10%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGIGSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L + L
Sbjct: 172 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMALIDC 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI ERT+ + LLYR +L + +
Sbjct: 228 FGRFGYDLYRK-ARGISNSPVKTNRVRKSIGKERTY-----RKLLYRDEDVLKELVSLCQ 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAEL 230
++A +++ +GRT+ LK++ F T+ +L++ + ++ I K L +AE
Sbjct: 282 RVAASLERNEKQGRTIVLKIRYGDFSTLTKRHSLEEPTNQAQVIEKEIRQLFEEVGRAEK 341
Query: 231 PVSLRLIGLRVTQFNEDKVR 250
V RL+G+ VT F E + R
Sbjct: 342 GV--RLLGVTVTNFMEGESR 359
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R ++ EIAEE+R + E LT SAG++ N+ LAK+ SD KP+
Sbjct: 115 SLDEAYLDVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGISYNKFLAKMASDQRKPD 173
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 174 GLFVITPKHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 230
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 231 KSGPYFYWIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 290
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+
Sbjct: 291 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVT 350
Query: 241 VTQFN 245
++ +
Sbjct: 351 LSSLD 355
>gi|407476537|ref|YP_006790414.1| DNA polymerase IV [Exiguobacterium antarcticum B7]
gi|407060616|gb|AFS69806.1| DNA polymerase IV [Exiguobacterium antarcticum B7]
Length = 360
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 126/244 (51%), Gaps = 7/244 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + S IA+ + T + GLT SAGV+ ++L+AK+ S KPN
Sbjct: 103 SLDEAYLDVTENNLQM-TSATHIAQYILTEIKRRTGLTASAGVSNSKLVAKIASGHQKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G VLP D AV+ F+S L I + G+GKVTE LR G NT ++ Q + L +
Sbjct: 162 GLTVLPPD--AVLPFLSGLEIGDLHGVGKVTEQTLRK-HGFNTVADLQQSPIAELRGLLG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
++ G R RKSI SE TF TED ++ L A + +
Sbjct: 219 RDRGTELYTMAHGEDERMVRPHRERKSIGSESTFEEDTEDIDTIFETLKREALSVVKTLN 278
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLR 240
++ L RT+T+K KT F+ R+R T + + E +L+ + L + E +RLIG+
Sbjct: 279 QKELVCRTVTIKWKTEDFQSRSRRYTFLEETADEETLLRVTTKLFNEIEFTGPIRLIGMS 338
Query: 241 VTQF 244
V+
Sbjct: 339 VSHL 342
>gi|392987494|ref|YP_006486087.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
gi|392334914|gb|AFM69196.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
Length = 315
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 13/249 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T R S I+IA ++ ++EE LTCSAGV+ N+ LAK+ SD KP
Sbjct: 61 VSIDEAYLDVTNNKRNCK-SAIKIARLIQRDIWEEVKLTCSAGVSYNKFLAKLASDFQKP 119
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAV 120
G V P D +TF+ +LPI K G+GK T + ++ GI T E++ +L
Sbjct: 120 KGITIVAPQD---ALTFLKALPIDKFHGVGKKTVPKMHEL-GIFTGEDLYNCTEMMLIQQ 175
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 178
F + V G+ R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 176 FGKMGYSLYRKVR-GVHDAPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLQQLAEKVEE 233
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L + +RL
Sbjct: 234 SLKRVQKHGKTVVLKVRYTDYTTVTKRVTLPEYIYKKEALFYQASLIWEEILGIEQGIRL 293
Query: 237 IGLRVTQFN 245
+G+ +T +
Sbjct: 294 LGITLTNLD 302
>gi|418719523|ref|ZP_13278722.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
gi|410743566|gb|EKQ92308.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
Length = 330
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 18/254 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T +R I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 71 SLDEGYLDVT--FNKRNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 128
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ GI+ +++ K
Sbjct: 129 NGLTIVLPDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQH 184
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 185 FGKMGIYYYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRL 244
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS- 233
+K G+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS
Sbjct: 245 KKRNFAGKTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSV 304
Query: 234 --LRLIGLRVTQFN 245
+RL+G+ ++ N
Sbjct: 305 KAIRLLGINLSHPN 318
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 9/228 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEA+LD+T+V R+ G + +EIA+ ++ V E GL SAGV+ N+ LAK+ SD KP
Sbjct: 104 VSIDEAFLDVTDVWRDYGYA-MEIAKLIKEDVRREVGLIISAGVSYNKFLAKIASDWRKP 162
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
+G V+ PN A + FI LP++ I G+G VT + + GI T +++ +K S L
Sbjct: 163 DGLCVIHPN---AALKFIDRLPVKAIWGVGPVTSQKM-EALGIFTGKDLREKDLSFLVEQ 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSAD 179
F S ++ + + R RK +S+E T S E L L+E+ + L
Sbjct: 219 FGSSGLSYY-NFARCIDDRPVRTERIRKQVSAEITLSKDEGNLNKLEDTLSELTDYLMTR 277
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 227
++K GR+LTLK++ +F+ TR T + ILK A LL+
Sbjct: 278 LRKNDFLGRSLTLKVRFHNFKTITRTQTSNSVFNEKSQILKTAESLLE 325
>gi|424835122|ref|ZP_18259792.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
gi|365978249|gb|EHN14341.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
Length = 349
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 11/251 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDI+ + E I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDISHIKEE----PIKVAKHIKKRVKDEIGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VF 121
+G ++ D + + L I KI GIGK + L ++ GI T E+M + C F
Sbjct: 156 DGIKIIKED--MIPRILMPLSINKINGIGKKSVERLNNI-GIYTVEDMHKLSKDFCIEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + G+ +R RKSI E T +K + + L + + +S ++
Sbjct: 213 GKFGVEIYERIR-GIDYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
K G+T+T+K+KT++F+ TR+ T+ Y ++I A +L +RLIGL
Sbjct: 272 YKRNSAGKTITVKIKTSNFKTHTRSKTVNNYTRDKDEIYSIACDILDNINFKEPIRLIGL 331
Query: 240 RVTQFNEDKVR 250
V+ E+K++
Sbjct: 332 TVSNLGENKIK 342
>gi|407842323|gb|EKG01063.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 366
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 9/252 (3%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 60 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 119
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ LP+R + GIG V + +LR V GI TC +L+K LLC
Sbjct: 120 KPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVRDAVLR-VLGIRTCGCVLRKKGLLCF 178
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEM 175
+F T F+LS GLG+ +N R +K++ E TF + +A L + + E+
Sbjct: 179 LFPEKTFRFYLSAGLGVVRSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVA 238
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ + + + +TL +K +FE ++TL + + +L+ LL+ L
Sbjct: 239 VHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDK 298
Query: 234 LRLIGLRVTQFN 245
RL+G+R+ +
Sbjct: 299 FRLVGVRLGKLQ 310
>gi|94497839|ref|ZP_01304405.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
gi|94422728|gb|EAT07763.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
Length = 360
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 9/220 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + GI S +A+E+R + E GLT SAGV+ N+L+AK+ SD NKP
Sbjct: 105 SLDEAYLDVT--VNKPGIASATRVAQEIRRMIRAETGLTASAGVSYNKLIAKLASDQNKP 162
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G V+ P + A FI+++P+R+I G+G VT ++ GI T ++ +
Sbjct: 163 DGICVVRPAEGAA---FIAAMPVRRIHGVGPVTARRMQ-ALGIETGADLRARDLPFLQAH 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADM 180
S ADF+ G + + RKS+S E T F D+ L +L I+ L +
Sbjct: 219 FGSAADFYYRAARGEDDRPVRERQSRKSVSVEDTFFGDLTDRDALVTELDRISASLWTRI 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 220
+K GRT+ LK+K A F + TR+ + + S+E + +
Sbjct: 279 EKAQAWGRTVVLKVKFADFRIITRSRSFASPVRSAEQLAQ 318
>gi|317485314|ref|ZP_07944194.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
gi|316923440|gb|EFV44646.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
Length = 398
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 134/257 (52%), Gaps = 11/257 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 60
AS+DEAYLD T + ER +E +A ++ V E GLTCS G+AP + LAK+ SD+N
Sbjct: 100 ASVDEAYLDATGL--ERLFGPVEDMARRIKLEVKEVTGGLTCSIGLAPVKFLAKIASDLN 157
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KP+G +L D++A F+ SLP+ +I G+GK L+ + I T ++ + +
Sbjct: 158 KPDGLSILYPDKLA--AFLQSLPVEQIPGVGKTMVRELQSL-AIRTAGDVPRYPKVFWER 214
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
G+ KS S+E TF + T D L L A+ +
Sbjct: 215 RFGKAGITLYERAQGIDPREVEPYTPPKSESAETTFDIDTRDIGFLKSWLFRHADRIGRT 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIG 238
++K+ L+GR +TLK+K A F + TR VTL S++E I + A LL L +RLIG
Sbjct: 275 LRKQKLQGRVITLKIKYADFRLMTRRVTLDAPTSATETIYETACDLLDHMRLEEKIRLIG 334
Query: 239 LRVTQFNED--KVRAPS 253
+ V+ F+ ++R P+
Sbjct: 335 VGVSGFDSPPHQLRLPT 351
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ + F++
Sbjct: 333 GVGLGGFSD 341
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 132/255 (51%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VEEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T +V + AL LY +L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLIENIHTVEQALALLNNLYDELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+S ++ R + +KLK F+V T T L + S + +L + K S
Sbjct: 279 RVSRNIPLSSF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRSKGR---S 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 132/255 (51%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VSEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T ++ + AL LY +L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLVENIHTIEQASALLNNLYDELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+S ++ R + +KLK F+V T T L + S + +L + K +
Sbjct: 279 RVSRNIPLSSF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---A 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VEEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T ++ + AL LY++L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+S ++ R + +KLK F+V T T L + S + +L + K
Sbjct: 279 RVSRNIPLSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---K 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ + F++
Sbjct: 333 GVGLGGFSD 341
>gi|384420785|ref|YP_005630145.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463698|gb|AEQ97977.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 369
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 110 SLDEAYLDVTQA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 167
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R + F+ L + +I G+GKV + L GI T ++ L+ L A F
Sbjct: 168 DGQFVIAPSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHF 224
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 225 G-SFGQSLYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLA 281
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRL 236
++ GRT+ LKLKT++F + TR+ T + S E + + A L + ELP RL
Sbjct: 282 TRRTERIGRTVVLKLKTSNFRILTRSCTPGQPPVSQEALAQIALALTRRVELPAQTRYRL 341
Query: 237 IGLRVTQFNEDKVRA 251
+G+ ++ FN+ + RA
Sbjct: 342 VGVGLSGFNDVEERA 356
>gi|162146654|ref|YP_001601113.1| DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209543354|ref|YP_002275583.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
gi|161785229|emb|CAP54775.1| putative DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209531031|gb|ACI50968.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
Length = 381
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ +R S IA+++R ++ E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 118 SLDEAYLDVTDPLIDR-PSATAIAQDIRAAIRAETGLTASAGVSYNKFLAKLASDYRKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +V+ RM F+ SLP+ GIG T +R GI T ++ A
Sbjct: 177 GLYVI-TPRMGP-RFVESLPVEAFHGIGPATAARMR-AMGIRTGLDLRAHDMDSLARHFG 233
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
A F+ + G R RKS+ +ERTF D A L + + + + +K
Sbjct: 234 KAAAFYYGIARGRDDRPVEADRRRKSVGTERTFEHDIHDWAEALSALDGMVDRVWGECRK 293
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
GL RT+T+K+K A F+ RA +L + +++ + A LL+ P +RL+G+
Sbjct: 294 RGLVARTVTVKVKYADFQQTGRARSLPQPLAAHAVFRQVACDLLRPFFPPERGIRLLGVT 353
Query: 241 VTQFN 245
++ +
Sbjct: 354 LSNLD 358
>gi|257869791|ref|ZP_05649444.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
gi|257803955|gb|EEV32777.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
Length = 374
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 132/250 (52%), Gaps = 15/250 (6%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T V + S I+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP
Sbjct: 118 VSIDEAYLDVT-VNKINCPSAIKIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKP 176
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G V+P D + F+ LPI K GIGK T + ++ GI ++ + + L
Sbjct: 177 RGLTVVMPED---AVVFLKKLPIDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQE 232
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLS 177
F + V G+ + R RKS+ E T+ TED+ + +L +AE +
Sbjct: 233 FGKMGYSLYRKVR-GIHDSPVSVTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVE 289
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+++ G+T+ LK++ A + T+ VTL +Y+ E I AS++ + L + +R
Sbjct: 290 RSLKRTQKHGKTVVLKVRYADYSTITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIR 349
Query: 236 LIGLRVTQFN 245
L+G+ VT +
Sbjct: 350 LLGITVTNLD 359
>gi|339017671|ref|ZP_08643821.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
gi|338753217|dbj|GAA07125.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
Length = 367
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 114/219 (52%), Gaps = 11/219 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ R + I IA+E+R ++ E GLT SAG++ N+ LAK+ SD KPN
Sbjct: 104 SLDEAYLDVTQPLLPRPYATI-IAQEIRAAILAETGLTASAGISYNKFLAKLASDYRKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
GQFV+P A F++ LP+ GIG T + + GI T ++ Q S L F
Sbjct: 163 GQFVIPPG--AGEAFVADLPVSAFHGIGPATAARM-NSLGIYTGADLRTQSLSTLAHHFG 219
Query: 123 HSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
+ A + G+ G N P R RKSI E TF A L+ L +++ +
Sbjct: 220 KAAAFYH---GIARGEDNRPVEVNRPRKSIGKETTFERDIRLPADLHAALGNLSQAVWQA 276
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 218
K L GRT+TLKL+ F TR+ +L + S +
Sbjct: 277 SAKRTLSGRTVTLKLRYEDFTQLTRSKSLPHCVQGSAQL 315
>gi|224826052|ref|ZP_03699155.1| DNA-directed DNA polymerase [Pseudogulbenkiania ferrooxidans 2002]
gi|224601689|gb|EEG07869.1| DNA-directed DNA polymerase [Pseudogulbenkiania ferrooxidans 2002]
Length = 359
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 12/201 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ +G + + +AE +R+ + +E G+T SAG+APN+ LAKV SD NKP+
Sbjct: 105 SLDEAYLDVSGRPHCQGSASL-MAEAIRSRIRDEIGITASAGIAPNKFLAKVASDWNKPD 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ P D V F+ +LP+ KI G+G VT L G+ CE++ +G L +
Sbjct: 164 GQFVIRPED---VDAFVRALPVGKIPGVGAVTASRLH-ALGVRHCEDV--RGWELAELVR 217
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
H + ++ G+ R RKSIS E T++V D KL E+ E L+
Sbjct: 218 HFGRFGERLHALARGIDPRPVSIERLRKSISVEETYAVDLPDLDACLAKLPELLERLAHR 277
Query: 180 MQKEGLRG-RTLTLKLKTASF 199
+++ G R L++KLK A F
Sbjct: 278 LERAGQPAFRGLSVKLKFADF 298
>gi|347549369|ref|YP_004855697.1| putative DNA-damage-inducible protein dinP [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346982440|emb|CBW86436.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 356
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD +KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFHKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V+ D F+ +P+ K G+GKVT L + GI T + L+K S +
Sbjct: 162 AGITVVSPDEAE--AFLEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRE 217
Query: 123 HSTADFFLSVGLGLGSTNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
+ L + S N R RKS+ E TF D+ +L + L A+ + +
Sbjct: 218 LHKQGYHLYRHVRGRSNNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERL 277
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIG 238
K G+T+ LKL+ + F T+ +TL +YI ++ I + A++LL+ S+RLIG
Sbjct: 278 TKLQKHGKTIVLKLRYSDFTTVTKRLTLNEYIHDAKQIYQAAALLLRETYTGKESIRLIG 337
Query: 239 LRVTQF 244
L VT
Sbjct: 338 LTVTNL 343
>gi|421093754|ref|ZP_15554478.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
gi|410363737|gb|EKP14766.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
Length = 330
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 18/254 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T +R I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 71 SLDEGYLDVT--FNKRNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKP 128
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ GI+ +++ K
Sbjct: 129 NGLTIVLPDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQH 184
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 185 FGKMGIYYYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRL 244
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS- 233
+K G+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS
Sbjct: 245 KKRNFAGKTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSV 304
Query: 234 --LRLIGLRVTQFN 245
+RL+G+ ++ N
Sbjct: 305 KAIRLLGINLSHPN 318
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 16/249 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T G S IA+ +++ + E GLT SAGV+ N+ LAK+ SD++KP+
Sbjct: 104 SLDEAYLDVTYTESFNG-SATLIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPD 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G +++ ++ F++ LPI K GIG TE ++++ G++T ++ QK + L F
Sbjct: 163 GLYLIRPEQG--QEFVNKLPIGKFHGIGPATEIKMKNL-GVHTGHDLRQKSLTELSERFG 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSAD 179
S ++ ++ + R RKS+ E TF+ ED L L ++AE +
Sbjct: 220 KS-GQYYYNIARAIDDRPVRSQRIRKSLGKETTFA--EDILSIPDLNNILLDVAEQVLGS 276
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRL 236
+ K ++GRT+T+K+K A F+ TRA TL I ++ +L + E PV RL
Sbjct: 277 LSKHNMQGRTVTVKVKYADFQQVTRAQTLDHSIGFADLQEWLPKLLARTEAGHKPV--RL 334
Query: 237 IGLRVTQFN 245
+GL ++ F+
Sbjct: 335 VGLSLSGFD 343
>gi|424725316|ref|YP_007013399.1| Hypothetical protein [Agrobacterium tumefaciens]
gi|418434494|gb|AFX65586.1| Hypothetical protein [Agrobacterium tumefaciens]
Length = 364
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 9/247 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE +E I+ EIA +R + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 106 SLDEAYLDVTENLKEMPIA-TEIALAIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPN 164
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + + GI T ++ K +
Sbjct: 165 GQAVITPKNGPA---FVEGLAVKKFHGVGPATAEKMHRL-GIETGADLKTKSLQFLSQHF 220
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TF D + +L +A+ + +
Sbjct: 221 GKSGGYFYGIARGIDERQVRPDRVRKSVGAEDTFIQDINDLGVARDELKPLADKVWGYCK 280
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 239
G+ +T+T+K+K + F TR+ T + D+L+ A+ LL P +S+RL+G+
Sbjct: 281 SSGIEAKTVTVKIKYSDFTQATRSKTSVLPFADGHDVLRIAADLLTTVYPFKLSVRLLGV 340
Query: 240 RVTQFNE 246
++ +
Sbjct: 341 TLSSLTK 347
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ + F++
Sbjct: 333 GVGLGGFSD 341
>gi|288929132|ref|ZP_06422977.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
gi|288329234|gb|EFC67820.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
Length = 367
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 23/258 (8%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + GI ++IA+ +R + E LT SAGV+ N+ LAKV SD KP
Sbjct: 106 SLDEAYLDVTQ--NKLGIELAVDIAQRIRQEIRNELHLTASAGVSFNKFLAKVASDFRKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ R M FI +LPI G+G T + + N + L VF
Sbjct: 164 DGITVIHPSR--AMHFIDNLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEM 175
+ + + + + RKS+ ERTF ED + LYR + E+ E
Sbjct: 222 KA-GEMYYNFARAIDPRPVEPHWIRKSVGCERTFD--EDSSNPTVLLTELYRLVLELVER 278
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
L +K +GRTLTLK+K F TR+ T + EDIL A LL +E+ S
Sbjct: 279 L----KKNDFKGRTLTLKVKFHDFTQITRSRTAPHVLRKKEDILPIAKALL-SEVNYSGR 333
Query: 234 -LRLIGLRVTQFNEDKVR 250
+RL+G++V+ N++ R
Sbjct: 334 PIRLLGVQVSNMNDEPHR 351
>gi|387131110|ref|YP_006294000.1| DNA polymerase IV [Methylophaga sp. JAM7]
gi|386272399|gb|AFJ03313.1| DNA polymerase IV [Methylophaga sp. JAM7]
Length = 362
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 137/254 (53%), Gaps = 20/254 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPN
Sbjct: 104 SLDEAYLDVSYTADYNG-SATLIAKAIKRDILKETRLTASAGVSYNKFLAKIASDMDKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G +V+ +R F+ +LP+ K GIG TE ++ + GI T ++ K + L F
Sbjct: 163 GLYVIRPERGE--KFVETLPVGKFHGIGPATEAKMKQL-GIETGLDLRNKTLAQLTERFG 219
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLS 177
+ ++ ++ + +R RKS+ E TF SVTE L KL ++AE++
Sbjct: 220 KA-GHYYFNIARAIDERPVRSSRTRKSLGKETTFAQDITSVTE----LTTKLLDLAEIVL 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---L 234
+ K+ L RT+T+K+K + F+ TRA TL I+ + L+ +L A +
Sbjct: 275 ESLAKQKLNARTVTVKVKYSDFQQITRAHTLDHSIALGD--LREVIPMLLARTEAGKNPV 332
Query: 235 RLIGLRVTQFNEDK 248
RL+GL ++ F+ K
Sbjct: 333 RLVGLSLSGFDAGK 346
>gi|357050984|ref|ZP_09112180.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
gi|355380609|gb|EHG27745.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
Length = 371
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 132/250 (52%), Gaps = 15/250 (6%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T V + S I+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP
Sbjct: 115 VSIDEAYLDVT-VNKINCPSAIKIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKP 173
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G V+P D + F+ LPI K GIGK T + ++ GI ++ + + L
Sbjct: 174 RGLTVVMPED---AVVFLKKLPIDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQE 229
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLS 177
F + V G+ + R RKS+ E T+ TED+ + +L +AE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVSVTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVE 286
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+++ G+T+ LK++ A + T+ VTL +Y+ E I AS++ + L + +R
Sbjct: 287 RSLKRTQKHGKTVVLKVRYADYSTITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIR 346
Query: 236 LIGLRVTQFN 245
L+G+ VT +
Sbjct: 347 LLGITVTNLD 356
>gi|393765264|ref|ZP_10353849.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
gi|392729263|gb|EIZ86543.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
Length = 360
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 134/250 (53%), Gaps = 15/250 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
+LDEAYLD+TE G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KP
Sbjct: 106 ALDEAYLDVTENLL--GLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDYRKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+ FV+ M F+++LPI + G+G VTE ++ + GI T ++ L F
Sbjct: 164 DALFVI-TPAMGP-DFVAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWDPDRLREAF 220
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSA 178
+ A ++ +V GL R RKSI +E TFS ED A +L +LA + + + A
Sbjct: 221 GSAGA-YYHAVARGLDMRPVRAHRVRKSIGAETTFS--EDTAAFEILAARLAPLFDKVWA 277
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+G+R RT+TLKLK + F TRA +L ++ + + LL P+ S RL
Sbjct: 278 GADAKGMRARTVTLKLKFSDFAQVTRAKSLSVPVADRAALERIGLDLLAGLFPLRRSARL 337
Query: 237 IGLRVTQFNE 246
IG+ ++ F +
Sbjct: 338 IGIALSGFEQ 347
>gi|381170537|ref|ZP_09879693.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688994|emb|CCG36180.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 359
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREEIQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ + F++
Sbjct: 333 GVGLGGFSD 341
>gi|359727025|ref|ZP_09265721.1| DNA polymerase IV [Leptospira weilii str. 2006001855]
Length = 352
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 137/254 (53%), Gaps = 18/254 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 93 SLDEGYLDVT--FNKKNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 150
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ I T +++ K +
Sbjct: 151 NGLTVVLPDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKNIDELVQY 206
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 207 FGKMGIYYYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
++ G+TLTLK+K F +RTR+ TL + I S++++ A+ L + +
Sbjct: 267 KERDFAGKTLTLKIKFQDFRLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQVSI 326
Query: 233 -SLRLIGLRVTQFN 245
++RL+G+ ++ N
Sbjct: 327 KAIRLLGINLSHPN 340
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 105 SLDEAYLDVTK--NKKSIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKP 162
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 163 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 215
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 216 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEE 274
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
+ ++ G+TLTLK+K F TR+++L+ YI DI LL+ + V+
Sbjct: 275 VCHRLKSSEKFGKTLTLKIKYEDFTKITRSISLEHYIDEYNDIRSGVDNLLR-NVEVNGK 333
Query: 234 -LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 334 QIRLLGVTISNLSDKK 349
>gi|343472335|emb|CCD15475.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 20/284 (7%)
Query: 1 MAASLDEAYLDITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 58
++ +DE L++++ +G ++ +++A ELR V+ E LT SAG+ P LAK+ S+
Sbjct: 248 VSVGMDELTLEVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASN 307
Query: 59 INKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
NKPNGQ+ L + R VM ++ LP+R GIGK E+ L+ + INT ++ ++ L
Sbjct: 308 YNKPNGQYELRLHTREDVMRYVRDLPLRAAPGIGKAMENTLKGL-DINTLGDIYERRVEL 366
Query: 118 CAVFSHSTADFFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTEDKALL 165
C V + F L +G+ S P F RKS+ SER FS KA L
Sbjct: 367 CYVLTEKLYRFLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAEL 426
Query: 166 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 225
I + + +++ R ++L+++ SF ++ +L ++ + + L
Sbjct: 427 KEVATTIFQAVYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGEL 486
Query: 226 LKAELP--VSLRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 265
L + S+RL+G+R+ K + QKTL+ F T
Sbjct: 487 LLPHVSYYASMRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|418737843|ref|ZP_13294240.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410747037|gb|EKQ99943.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 330
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 18/254 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T +R I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 71 SLDEGYLDVT--FNKRNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKP 128
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ GI+ +++ K
Sbjct: 129 NGLTIVLPDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIGELVQH 184
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 185 FGKMGIYYYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRL 244
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS- 233
+K G+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS
Sbjct: 245 KKRNFAGKTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSV 304
Query: 234 --LRLIGLRVTQFN 245
+RL+G+ ++ N
Sbjct: 305 KAIRLLGINLSHPN 318
>gi|408673241|ref|YP_006872989.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
gi|387854865|gb|AFK02962.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
Length = 355
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 13/242 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI+ EIA+E++ + E+ LT SAGV+ N+ LAK+ SD KP
Sbjct: 101 SLDEAYLDVTENLK--GIATATEIAQEIKVRIKEKTTLTASAGVSVNKFLAKIASDYRKP 158
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G FV+ P+ A F+ L I K GIG+VT + + GI T +E+ +K
Sbjct: 159 DGLFVIKPSQAEA---FVEKLEIAKFHGIGRVTAEKMHKM-GIFTGKELREKSLEFLVNN 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSAD 179
++ + G+ + + RKS+ E TF +TE LY +L +I E L
Sbjct: 215 FGKVGRYYHDIARGIDNRSVNPDSIRKSVGVENTFDRDLTEPDD-LYHELDDIIEQLWRR 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLI 237
MQ+ G+++TLK+K A F+ TR+ T + + + K + +L LP +RL+
Sbjct: 274 MQRANAFGKSITLKIKFADFDTITRSRTTHLPVFEKDFLAKVSYEMLNNLFPLPKGVRLM 333
Query: 238 GL 239
G+
Sbjct: 334 GV 335
>gi|148556499|ref|YP_001264081.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
gi|148501689|gb|ABQ69943.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
Length = 380
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 17/251 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T +GI+ E+A ++R + EE GLT SAGV+ N+ +AK+ SD NKP
Sbjct: 122 SLDEAYLDVTN--NHQGIATATEVARQIRARIREETGLTASAGVSYNKFIAKLASDHNKP 179
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G V+ D+ + FI+ P+ + G+G VT + + GI+T ++ + L F
Sbjct: 180 DGLCVVRPDQG--LAFIAMQPVGRFHGVGPVTATRM-EKLGIHTGADLRRCSREFLGQQF 236
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLS 177
S D+F + R RKSI SE TF ED L L E +E ++
Sbjct: 237 GKS-GDYFYLAARAIDHRAVRPDRVRKSIGSENTFFHDLYSHED---LAAALLESSESVA 292
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--R 235
++ G GRT+++KL+ + F TRA TL ++ + I + A LL PV+L R
Sbjct: 293 RHAERTGKAGRTISIKLRYSDFRTLTRARTLPAPVADAARIQEVALALLAPLEPVALGVR 352
Query: 236 LIGLRVTQFNE 246
L+G+ ++ E
Sbjct: 353 LLGVTLSSLGE 363
>gi|116873410|ref|YP_850191.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123463973|sp|A0AK80.1|DPO4_LISW6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116742288|emb|CAK21412.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 356
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V+ P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGMTVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
A + K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ARLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 104 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 162 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 214
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 215 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEE 273
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
+ ++ G+TLTLK+K F TR+++L+ YI DI LL+ + V+
Sbjct: 274 VCHRLKNSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGK 332
Query: 234 -LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 333 QIRLLGVTISNLSDKK 348
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 109 SLDEAYLDVTHNLKGMEIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPN 167
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ +LP++K G+G T + + GI+T + +K
Sbjct: 168 GQAVITPKNGPA---FVEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHF 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFS R+ L + E + A +
Sbjct: 224 GKSGPYFYGIARGIDERQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCE 283
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
G+ +T+TLK+K A F TR+ T+ + + D+ + S+LL P +RL+G+
Sbjct: 284 ANGIGAKTVTLKVKYADFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGV 343
Query: 240 RVTQF 244
++
Sbjct: 344 TLSSL 348
>gi|456357588|dbj|BAM92033.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Agromonas oligotrophica S58]
Length = 357
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 132/254 (51%), Gaps = 23/254 (9%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +IA ++R + E L SAG++ N+ LAK+ SD
Sbjct: 103 SLDEAYLDVTE-----NLQGIPLARDIALQIRAKIKAETDLNASAGISYNKFLAKLASDH 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ+V+ + A F+ LP+ K GIG T + GI+T ++ +
Sbjct: 158 RKPNGQYVISPEMGA--AFVEGLPVGKFHGIGPATTAKF-NALGIHTGLDIRNQTLPFLQ 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTE---DKALLYRKLAEIAE 174
++ + G+ R RKS+ +E TFS +TE KA L + ++
Sbjct: 215 QHFGKAGSYYYWISRGVDDRPVRANRIRKSVGAENTFSTDLTEFEPMKAELLPLIDKVWR 274
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-- 232
A K GRT+TLK+K A FE+ TR+ ++ + S +D+ + + LL++E+P+
Sbjct: 275 HCEATCNK----GRTVTLKVKFADFEIMTRSRSVASAVGSRDDLERLSVALLQSEMPLPK 330
Query: 233 SLRLIGLRVTQFNE 246
+RL+G+ ++ E
Sbjct: 331 PVRLLGVSLSSLQE 344
>gi|387133651|ref|YP_006299623.1| ImpB/MucB/SamB family protein [Prevotella intermedia 17]
gi|386376499|gb|AFJ07990.1| ImpB/MucB/SamB family protein [Prevotella intermedia 17]
Length = 345
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 136/251 (54%), Gaps = 25/251 (9%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+T + GI +++A+ ++ ++ E LT SAGV+ N+LLAK+ SD KP
Sbjct: 92 SLDEAFLDVTH--NKLGIELAVDLAKRVKEDIFRETHLTASAGVSYNKLLAKIASDYRKP 149
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
NG F + D+ + FI+ LPIRK GIG T + + GI E+ L+K SL L V
Sbjct: 150 NGIFTVHPDK--ALDFIAELPIRKFLGIGPKTAATMHKM-GIYKGEQ-LRKVSLSHLVQV 205
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSV---TEDKAL--LYRKLAEIA 173
F + + G N P A + RKS+ E+TF TE K + LY + E+
Sbjct: 206 FGKMGSVLY---DFARGIDNRPVAAYRERKSVGCEQTFLEDLNTESKVIIALYHIVIELI 262
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LP 231
E +S K G TL+LK+K + TR+ T+ K + + +DIL A LL+
Sbjct: 263 ERIS----KSKFEGHTLSLKIKWNTKSQITRSTTVGKVLKTKDDILPLAKYLLRQTEYRH 318
Query: 232 VSLRLIGLRVT 242
++RL+GL V+
Sbjct: 319 RTIRLLGLSVS 329
>gi|342185958|emb|CCC95443.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 20/284 (7%)
Query: 1 MAASLDEAYLDITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 58
++ +DE L++++ +G ++ +++A ELR V+ E LT SAG+ P LAK+ S+
Sbjct: 248 VSVGMDELTLEVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASN 307
Query: 59 INKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
NKPNGQ+ L + R VM ++ LP+R GIGK E+ L+ + INT ++ ++ L
Sbjct: 308 YNKPNGQYELRLHTREDVMRYVRDLPLRAAPGIGKAMENTLKGL-DINTLGDIYERRVEL 366
Query: 118 CAVFSHSTADFFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTEDKALL 165
C V + F L +G+ S P F RKS+ SER FS KA L
Sbjct: 367 CYVLTEKLYRFLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAEL 426
Query: 166 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 225
I + + +++ R ++L+++ SF ++ +L ++ + + L
Sbjct: 427 KEVATTIFQAVYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGEL 486
Query: 226 LKAELP--VSLRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 265
L + S+RL+G+R+ K + QKTL+ F T
Sbjct: 487 LLPHVSYYASMRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|308523773|gb|ADO33729.1| putative DNA polymerase IV [Deinococcus ficus]
Length = 358
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 144/254 (56%), Gaps = 14/254 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T R G S IA+E+R V E GLT SAGV+ N++LAK+ S +NKP
Sbjct: 102 SLDEAYLDVTRPKRGPG-SATRIAQEIRRLVRERTGGLTVSAGVSFNKMLAKLGSGMNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV 120
+G +LP D A I+ LP+ + GIG VT L + GI T ++ + + L A
Sbjct: 161 DGLTVILPQDADA---LIARLPVGEFYGIGPVTAAKL-ERLGIRTGADLRARSLTELTAA 216
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSA 178
F A + ++ G+ + RKS+ +E T+ T+ + L ++ KL ++E +
Sbjct: 217 FGRHGAHMY-AIARGIDDRPVDPSDDRKSVGTEDTYD-TDLRTLADMHAKLPGLSERTAR 274
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRL 236
+ + GL GR +T+K+K ++FEV +R +L + ++E+I + A LL A+L ++RL
Sbjct: 275 RLARHGLAGRVVTVKVKFSNFEVISRQQSLPVPVQTAEEIGRVARRLLGADLVGTRAVRL 334
Query: 237 IGLRVTQFNEDKVR 250
+G+ V+ + + R
Sbjct: 335 LGVTVSHLVDPQGR 348
>gi|254229504|ref|ZP_04922918.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262393489|ref|YP_003285343.1| DNA polymerase IV [Vibrio sp. Ex25]
gi|151937969|gb|EDN56813.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262337083|gb|ACY50878.1| DNA polymerase IV [Vibrio sp. Ex25]
Length = 356
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 134/262 (51%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 107 SLDEAYLDVTDSTACRG-SATLIAESIRRDIWNELGLTASAGIAPIKFLAKVASDMNKPN 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P D+ V I +LP+ I G+GKV+ L G CE++ L F
Sbjct: 166 GQFVIPPDK--VQEVIDTLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFG 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ + R RKS+ ERTFS V EDK LY +L +
Sbjct: 223 RQGASLW-QRSHGIDNREVVVERERKSVGVERTFSQNISSYDECWQVIEDK--LYPELEK 279
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E S D + K+G +K+K A F++ T + Q + + +L+ +LK
Sbjct: 280 RLERASPDKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKR 329
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V E++ R
Sbjct: 330 QNGREIRLLGLNVMLKPENQAR 351
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 135/245 (55%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP+ F+ LPI K G+GK + L GI T E++L + L +
Sbjct: 172 KGLTLILPDQ---AQDFLKPLPIEKFHGVGKRSVEKLH-ALGIYTGEDLLSLSEISLIDM 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSAD 179
F D + G+ ++ R RKSI SE+T+ + ++A + ++++ + + A
Sbjct: 228 FGRFGYDLYRK-ARGINASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVAS 286
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLI 237
++K G+T+ LK++ A FE T+ +TL++Y + I + A + E +RL+
Sbjct: 287 LEKNKKVGKTIVLKVRYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLL 346
Query: 238 GLRVT 242
G+ VT
Sbjct: 347 GVTVT 351
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 104 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 162 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 214
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 215 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEE 273
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
+ ++ G+TLTLK+K F TR+++L+ YI DI LL+ + V+
Sbjct: 274 VCHRLKNSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGK 332
Query: 234 -LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 333 QIRLLGVTISNLSDKK 348
>gi|126178330|ref|YP_001046295.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
gi|226738237|sp|A3CSG3.1|DPO4_METMJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|125861124|gb|ABN56313.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
Length = 360
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+++ +A ++ V EE GLTCS GVAP + +AK+ SD KP+
Sbjct: 108 SIDEAYLDVSDAGSFPAAG--ALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPD 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG--SLLCAVF 121
G ++ D +A F++SLP+ +I GIGK T LR GI T ++ ++ ++ +
Sbjct: 166 GLTIVRPDEVA--GFLASLPVGRIPGIGKKTGEDLRQA-GILTVGDLARRDVQEVIARLG 222
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
L+ G+ G + KSIS E TF T D +L LAE+A+ ++ +
Sbjct: 223 RSGVRVHHLARGIDDGEVQGREG--CKSISRETTFEADTADPPVLAGTLAELADDVAETL 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLI 237
+ + LR RT+T+K++ F+ TR+ TL ++ S E I + AS LL L PV RLI
Sbjct: 281 RADNLRCRTVTVKVRYRGFQTHTRSRTLPRFTSDPETIRRAASGLLLPFLNGEPV--RLI 338
Query: 238 GLRVTQF 244
G+R++
Sbjct: 339 GVRLSML 345
>gi|406832336|ref|ZP_11091930.1| DNA polymerase IV 2 [Schlesneria paludicola DSM 18645]
Length = 348
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 9/246 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+ DEAYLD+TE + + + A E+R ++E GLT SAGV+ N+ LAK+ S KPN
Sbjct: 92 AFDEAYLDVTESLQGETTAWM-TAREIRARIFELTGLTASAGVSFNKFLAKLASGYKKPN 150
Query: 64 GQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
QF +LP D A F++ L + + GIG VT + D+ GI+T ++ + L
Sbjct: 151 SQFAILPGDAEA---FLAGLSVSRFHGIGPVTAKKMSDL-GIHTGADLKAQSVELLRQHF 206
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+++ + G S + AR RKS SSE TF E A + ++ +AE +
Sbjct: 207 GRIGEWYYGIARGEDSRSVEHARIRKSFSSETTFRQDLEQLADIEAQVLALAEDVWQWCD 266
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ GRT+T+K + A F+ TR+ + ++Y+ E + + L+++ P+ ++RL+G+
Sbjct: 267 GTQMFGRTVTVKFRFADFQRITRSRSEREYVDRPELLREICVGLVRSVFPLRQAIRLVGV 326
Query: 240 RVTQFN 245
++ F
Sbjct: 327 GISNFR 332
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 109 SLDEAYLDVTHNLKGMEIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPN 167
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ +LP++K G+G T + + GI+T + +K
Sbjct: 168 GQAVITPKNGPA---FVEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHF 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFS R+ L + E + A +
Sbjct: 224 GKSGPYFYGIARGIDERQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCE 283
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
G+ +T+TLK+K A F TR+ T+ + + D+ + S+LL P +RL+G+
Sbjct: 284 ANGIGAKTVTLKVKYADFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGV 343
Query: 240 RVTQF 244
++
Sbjct: 344 TLSSL 348
>gi|319763873|ref|YP_004127810.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|330823863|ref|YP_004387166.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
gi|317118434|gb|ADV00923.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|329309235|gb|AEB83650.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
Length = 397
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 13/252 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ S+++ GLTCS GVAPN+L+AK+ S+ +KPN
Sbjct: 134 GVDEVYIDFTQVPGGQREGGRVLARLIQKSIHDATGLTCSIGVAPNKLIAKMASEFDKPN 193
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
G V P D + I L RKI GIG T L+ GI+T ++ + L A F
Sbjct: 194 GISIVQPGD---LQARIWPLACRKINGIGPKTNDRLQ-AHGIHTIGDLAARPRDWLVAHF 249
Query: 122 SHSTADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
++ + G T + + + ER DKALL + + ++
Sbjct: 250 GKASGAWLHDAAWGRDERPVVTESEPVSMSRETTFERDLHAVSDKALLGEIFTTLCQQVA 309
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LR 235
D+ +G +GRT+ +KL+ A F+ TR T+ + + I + A LK +P++ LR
Sbjct: 310 QDLAAKGYKGRTIGIKLRYADFQTATRDQTIDQPTRDAATIRRAAGQCLK-RVPLTKRLR 368
Query: 236 LIGLRVTQFNED 247
L+G+RV + D
Sbjct: 369 LLGVRVGKLQPD 380
>gi|88705924|ref|ZP_01103633.1| DNA polymerase IV [Congregibacter litoralis KT71]
gi|88699995|gb|EAQ97105.1| DNA polymerase IV [Congregibacter litoralis KT71]
Length = 410
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T G S IAE +R + E LT SAGV+ N+ +AKV SD NKP+
Sbjct: 145 SLDEAYLDVTADLAGLG-SATAIAEAIRGDIRRELRLTASAGVSYNKFIAKVASDQNKPD 203
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
G FV+ + A F+++LP R+ G+G T + + GI T ++ Q L F
Sbjct: 204 GVFVVRPEEGA--AFVATLPARRFFGVGPKTAERMSSL-GIQTGADIRAQTLGFLEQHFG 260
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
S A + G R RKSI ERT+S ++ D+A L L I +++ +
Sbjct: 261 KS-AHYLYRASRGEDYRAVKADRERKSIGGERTYSDDLSTDEA-LRDALEHIIDIVWERI 318
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 238
+ RGRT+T+K+K A F+ TRA ++ + + E + + LL+A LPV +RL+G
Sbjct: 319 HRNNARGRTVTIKVKYADFQQITRARSVSPPVDTREAFERLSRGLLEALLPVPKGVRLLG 378
Query: 239 LRVTQF---------NEDKVRAPSDPTQKTLT 261
L ++ E V A S P Q++L
Sbjct: 379 LTLSSLESSQEPAHTGESGV-AESGPVQESLA 409
>gi|70726059|ref|YP_252973.1| DNA polymerase IV [Staphylococcus haemolyticus JCSC1435]
gi|82592825|sp|Q4L7K8.1|DPO4_STAHJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|68446783|dbj|BAE04367.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 358
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 134/250 (53%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R +S +IA +R ++E+ GLT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLSASKIATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ + I T +++ K L F
Sbjct: 162 GMKVI--DYNNVNDILMNLDIGDFPGVGKASKKVMHN-HDIYTGKDLYDKTEFELIRWFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+L G+ + R RKS+ +ERTFS V +D+ +L +K+ E++ + +
Sbjct: 219 KRGRGLYLK-ARGIDHSEVKATRVRKSVGTERTFSTDVNDDEEIL-QKIWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G T+T+KLKT +E ++ +L++ +S DI A L + V +RLIG
Sbjct: 277 SKLQKSGSTVTVKLKTYQYETFSKQRSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIG 336
Query: 239 LRVTQFNEDK 248
+ V + +
Sbjct: 337 VTVGNLEQSR 346
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 131/253 (51%), Gaps = 10/253 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE E S + IA E++ +++E LT SAGV+ N+ LAK+ S ++KPN
Sbjct: 101 SLDEAYLDVTENKPEIN-SAMAIAREIKGLIHQETHLTASAGVSINKFLAKMASGLDKPN 159
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V P+ A F+ LPI K GIGKVT + + GI T E+ Q
Sbjct: 160 GLSLVAPDQAEA---FVQQLPIEKFHGIGKVTAAKMHQL-GIQTGAELRQWSEPSLVRQF 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
++ + G+ R RKSI +ER+F +L +L IA + +
Sbjct: 216 GKVGHYYYGIARGIDERPVIANRIRKSIGAERSFFPDISGLPVLMEELDAIAAQVHLRLA 275
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGL 239
+ G TLTLK+K A+++ TR+ T+ + ++IL LL++ + ++RL+GL
Sbjct: 276 ENQRSGHTLTLKVKYANYQQITRSRTVDHPLYEVDEILVLGKELLQSHIDEQQAVRLLGL 335
Query: 240 RVTQFNEDKVRAP 252
+ DK R+P
Sbjct: 336 TLANLV-DKDRSP 347
>gi|254974524|ref|ZP_05270996.1| DNA polymerase IV [Clostridium difficile QCD-66c26]
gi|255313647|ref|ZP_05355230.1| DNA polymerase IV [Clostridium difficile QCD-76w55]
gi|255516331|ref|ZP_05384007.1| DNA polymerase IV [Clostridium difficile QCD-97b34]
gi|255649431|ref|ZP_05396333.1| DNA polymerase IV [Clostridium difficile QCD-37x79]
gi|260682597|ref|YP_003213882.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260686197|ref|YP_003217330.1| DNA polymerase IV [Clostridium difficile R20291]
gi|306519510|ref|ZP_07405857.1| DNA polymerase IV [Clostridium difficile QCD-32g58]
gi|384360178|ref|YP_006198030.1| DNA polymerase IV [Clostridium difficile BI1]
gi|260208760|emb|CBA61621.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260212213|emb|CBE02909.1| DNA polymerase IV [Clostridium difficile R20291]
Length = 365
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 104 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 162 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 214
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 215 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEE 273
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
+ ++ G+TLTLK+K F TR+++L+ YI DI LL+ + V+
Sbjct: 274 VCHRLKSSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGK 332
Query: 234 -LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 333 QIRLLGVTISNLSDKK 348
>gi|404254296|ref|ZP_10958264.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 364
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 9/246 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ + A+ +R + EE GLT SAG++ N+ LAK+ SD KPN
Sbjct: 109 SLDEAYLDVTANLQDLP-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPN 167
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQF + D A ++ +LP+ + G+G VT + + GI T ++ K L A F
Sbjct: 168 GQFAVTPDMGAA--WVETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFG 224
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
++ AD++ ++ G R RKS SE TF+ D + + ++A+ + A
Sbjct: 225 NA-ADWYHAIARGEDHRPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCA 283
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
K GRT+T+K+K F+ TR+ T I ++ + ++ L+++ LP + +RL+G+
Sbjct: 284 KAEAYGRTVTVKVKYNDFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGV 343
Query: 240 RVTQFN 245
V+ F+
Sbjct: 344 TVSTFD 349
>gi|304439728|ref|ZP_07399627.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371803|gb|EFM25410.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 346
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 130/241 (53%), Gaps = 15/241 (6%)
Query: 3 ASLDEAYLDI--TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
S+DEAYLDI TE G E+A ++++ V E+ GLT S G++ N+ LAK+ SD N
Sbjct: 97 VSIDEAYLDIAGTE-------DGRELAMKIKSEVKEKTGLTISVGLSYNKFLAKIASDWN 149
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA 119
KP+G + D V + L I K+ GIGKV+E LR++ GIN ++++ +
Sbjct: 150 KPDGFMEIDED--MVPEILYDLDISKVHGIGKVSEDRLREL-GINNVKDLMSLSREYMTL 206
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 179
F+ + + + G+ R RKS+ ERTF+ T D+ +LY + ++ LS D
Sbjct: 207 EFNKMGHELYDRIR-GIDRREVKGDRKRKSMGVERTFTPTGDEKILYEYIDRFSKELSED 265
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIG 238
+++ T+T+K+KT F++ T + T + I EDI A L K E LRL+G
Sbjct: 266 LKRIDKSAMTITIKIKTDKFKIHTISKTFLESIEKYEDIKNIAEELYDKLENRERLRLLG 325
Query: 239 L 239
+
Sbjct: 326 I 326
>gi|218780742|ref|YP_002432060.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
gi|254781919|sp|B8FBE8.1|DPO4_DESAA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|218762126|gb|ACL04592.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
Length = 396
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA++D+T R G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPN
Sbjct: 102 SLDEAFMDVTSSTRLFG-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+P D+ F+ LPI ++ G+G + + L + G+ T ++ + +L A F
Sbjct: 161 GLLVVPADQ--TQEFLDPLPISRLWGVGPASRNKLISL-GVKTIRDVRKLTQEMLSANFG 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSAD 179
+ + + G+ KSI E TF T ++A Y+ + ++E ++
Sbjct: 218 RN-GEVIYAFARGMDDRPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARR 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
M+KE GRT+ +K+K A F TR+VTL+ +I HA LL+ L S +RL+
Sbjct: 275 MRKEEATGRTVNIKVKYADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLL 334
Query: 238 GLRVTQF 244
G+ ++Q
Sbjct: 335 GVTLSQL 341
>gi|395490223|ref|ZP_10421802.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26617]
Length = 364
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 9/246 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ + A+ +R + EE GLT SAG++ N+ LAK+ SD KPN
Sbjct: 109 SLDEAYLDVTANLQDLP-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPN 167
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
GQF + D A ++ +LP+ + G+G VT + + GI T ++ K L A F
Sbjct: 168 GQFAVTPDMGA--AWVETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFG 224
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
++ AD++ ++ G R RKS SE TF+ D + + ++A+ + A
Sbjct: 225 NA-ADWYHAIARGEDHRPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCA 283
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 239
K GRT+T+K+K F+ TR+ T I ++ + ++ L+++ LP + +RL+G+
Sbjct: 284 KAEAYGRTVTVKVKYNDFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGV 343
Query: 240 RVTQFN 245
V+ F+
Sbjct: 344 TVSTFD 349
>gi|422019443|ref|ZP_16365991.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
gi|414103282|gb|EKT64860.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
Length = 351
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 10/157 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C++ S IAE +R +++E LT SAG+AP + LAK+ SD+NKPN
Sbjct: 101 SLDEAYLDVTD-CQQLHGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFV+ + TF++SLP++KI G+GKVT L D+ G+ TC + +QK +L +
Sbjct: 160 GQFVITPQELP--TFVASLPLKKIPGVGKVTAQKLADM-GLLTCSD-VQKYDMLALI--K 213
Query: 124 STADFFLSVG---LGLGSTNTPQARFRKSISSERTFS 157
S F ++ G+ R RKS+ ERT +
Sbjct: 214 SMGKFGQALWERCHGIDERAVNPERLRKSVGVERTLA 250
>gi|423349379|ref|ZP_17327035.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
gi|393702927|gb|EJD65129.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
Length = 466
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 135/258 (52%), Gaps = 20/258 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DE Y+D++ + EIA +R +V G+TCS G+A N+L+AK+ S KP+
Sbjct: 118 SVDECYMDVSGALLQWK-DPREIAAWIRQTVKRRIGVTCSVGIASNKLIAKLASTNAKPD 176
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
G ++P R A FI +PIR I GIG TE L +GI+T +++ + SL A+
Sbjct: 177 GMLMIPQSRQA--EFIQMMPIRAIPGIGPSTERAL-SAWGISTVKQLADMSISSLTSALR 233
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI-AEMLSADM 180
S + A + GLGS+ + KSI +ERTF+ + L L + +++ +
Sbjct: 234 SAAHARYLYQAARGLGSSGVVVSAAEKSIGAERTFAEDTNSWLKISGLLRWCCDDVASTL 293
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK------------- 227
+++ L RT+T+KL+ + ++++T+ + ++S+ I + LL
Sbjct: 294 RRKKLYARTVTVKLRLSDLSHISKSLTVTQPMNSAAQIYPISRQLLARLLKMQQPEKGKD 353
Query: 228 AELPVSLRLIGLRVTQFN 245
AE+P +RL G+ + F+
Sbjct: 354 AEVPRLIRLAGVSTSHFS 371
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 33/220 (15%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 IA---EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 208
I+ + ++A +Q G+T+ LK++ A F T+ VTL
Sbjct: 276 ISKNVKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTL 315
>gi|212709381|ref|ZP_03317509.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
gi|212688293|gb|EEB47821.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
Length = 351
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 10/157 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C++ S IAE +R +++E LT SAG+AP + LAK+ SD+NKPN
Sbjct: 101 SLDEAYLDVTD-CQQLHGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFV+ + TF++SLP++KI G+GKVT L D+ G+ TC + +QK +L +
Sbjct: 160 GQFVITPQELP--TFVASLPLKKIPGVGKVTAQKLADM-GLLTCSD-VQKYDMLALI--K 213
Query: 124 STADFFLSVG---LGLGSTNTPQARFRKSISSERTFS 157
S F ++ G+ R RKS+ ERT +
Sbjct: 214 SMGKFGQALWERCHGIDERAVNPERLRKSVGVERTLA 250
>gi|262370211|ref|ZP_06063538.1| nucleotidyltransferase/DNA polymerase [Acinetobacter johnsonii
SH046]
gi|262315250|gb|EEY96290.1| nucleotidyltransferase/DNA polymerase [Acinetobacter johnsonii
SH046]
Length = 353
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+AE +R +++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLQQLA-SATEVAERIRADIFQSTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+ + V FI LP++KI G+GKV + L + T ++ ++L F
Sbjct: 159 GICVIKPSQ--VQQFIQHLPLKKIPGVGKVMQEKLH-ALKLETLGDLQHVDENILIHHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKAL-LYRKLAEIAEMLSAD 179
+L G+ R R+ IS E TF +T ++ L + KL IA++ +
Sbjct: 216 KYGKQLYL-YAQGIDERPVQAERERQQISKETTFDDDLTIEQCLPFWPKL--IAQVWQS- 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS----LR 235
++K+ L R +T+KLK SF+ + + + + ++ +LLK E+ ++ R
Sbjct: 272 LEKKQLYARGVTVKLKLKSFQTLQHSKSFKTPLKHQTELQMTLDILLK-EMQITPDQQFR 330
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 331 LIGVGV 336
>gi|424040926|ref|ZP_17778973.1| DNA polymerase IV [Vibrio cholerae HENC-02]
gi|408891302|gb|EKM29153.1| DNA polymerase IV [Vibrio cholerae HENC-02]
Length = 342
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 132/262 (50%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 93 SLDEAYLDVTDSTACRG-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPN 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V + LP+ KI G+GKV+ L G CE++ L F
Sbjct: 152 GQFVIPPEK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + S G+ R RKS+ ERTFS V EDK LY +L +
Sbjct: 209 RQGASLW-SRSHGIDDREVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEK 265
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E D + K+G +KLK A F++ T + Q + + +L+ +LK
Sbjct: 266 RLEKACPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKALLRD---ILKR 315
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V E + R
Sbjct: 316 QNGREIRLLGLSVMLKPEQQAR 337
>gi|336476258|ref|YP_004615399.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929639|gb|AEH60180.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 361
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 16/265 (6%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+ + + + + IAE+++ ++ GLTCS G+AP + +AK+ SD NKP
Sbjct: 108 VSVDEAYLDMGKKVTDYDHACM-IAEQIKKEIFRAEGLTCSIGIAPGKKVAKIASDYNKP 166
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRD--VFGINTCEEMLQKGSLLCAV 120
+G V+P + V F++ +P+ KI GIGK TE +LR+ ++ + E + L +
Sbjct: 167 DGLTVVPPAK--VKEFLAPMPVSKIPGIGKKTEQMLREMNIYRVGQLAEYDVQA--LISR 222
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
F S F + G+ Q R KSIS E TF T D ++ L + E +
Sbjct: 223 FGKS-GIFMKQIANGVDHGEIKQYRESKSISKEDTFEEDTADYRIVESVLMSLCEEVHRA 281
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIG 238
M+ R RT+TLK++ + F TR+ TL+ + I +H+ L+K + RL+G
Sbjct: 282 MKINNFRFRTITLKVRFSDFRTYTRSSTLKCPAEEMDIIKQHSKNLIKEFIGQEKFRLVG 341
Query: 239 LRVTQFNEDKVRAPSDPTQKTLTNF 263
+ +++ + D Q +T+F
Sbjct: 342 IGISKLEK------IDKKQTLITDF 360
>gi|424892013|ref|ZP_18315593.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893756|ref|ZP_18317336.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183294|gb|EJC83331.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185037|gb|EJC85074.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 362
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 9/245 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 108 SLDEAYLDVTENLKGMDIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + +A F+ +LP++K G+G T + + GI+T ++ +K
Sbjct: 167 GQAVITPRNGLA---FVEALPVKKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHF 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFS R+ L + E + A +
Sbjct: 223 GKSGPYFYGIARGIDERRVKPDRVRKSVGAEDTFSQDLHSYEPAREGLQPLIEKVWAYCE 282
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ +T+TLK+K A F TR+ T+ + D+ LL P+ +RL+G+
Sbjct: 283 ANAIGAKTVTLKVKYADFNQITRSKTVPAALPGITDLEDIVDFLLAPIFPLRKGIRLLGV 342
Query: 240 RVTQF 244
++
Sbjct: 343 SLSSL 347
>gi|290476280|ref|YP_003469184.1| DNA polymerase IV [Xenorhabdus bovienii SS-2004]
gi|289175617|emb|CBJ82420.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Xenorhabdus bovienii SS-2004]
Length = 370
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 17/209 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ C+ S IA+++R +++E LT SAGVAP R LAK+ SDINKPN
Sbjct: 120 SLDEAYLDVTD-CQHCHGSATLIAQQIRQVIFDELQLTASAGVAPIRFLAKIASDINKPN 178
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQ+V+ +++ V F+ SLP+RKI G+GKVT L D+ G+ TC ++ K +L+ +
Sbjct: 179 GQYVISPEQVEV--FVKSLPLRKIPGVGKVTSKRLSDM-GLETCADVQNYDKVALIKKLG 235
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
A + S G+ R RKS+ E+T + + +R E+ E L +++
Sbjct: 236 KFGLALWERS--HGIDDRQISPDRLRKSVGVEKTLAQDIHE---WRDCVELIEKLYPELE 290
Query: 182 KE------GLRGRTLTLKLKTASFEVRTR 204
K LR +KLK F++ T+
Sbjct: 291 KRLGKVKPDLRIARQGIKLKFDDFQLTTQ 319
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 136/261 (52%), Gaps = 37/261 (14%)
Query: 4 SLDEAYLDITEVCRERGI--SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
SLDEAYLD+T +G + EIA+ +R + EE LT SAG+APN+ LAK+ SD K
Sbjct: 100 SLDEAYLDVTA---PKGALSTATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRK 156
Query: 62 PNGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
P+GQFV+ P+ V F++ LP+ K+ G+GKV + L GI T ++
Sbjct: 157 PDGQFVIRPHQ---VDAFLTPLPVSKVHGVGKVMQAKL-AALGIVTVGDLR--------- 203
Query: 121 FSHSTADF---FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRK 168
+H A+ F S GL G+ + +SISSE TF+ ED AL L
Sbjct: 204 -THGEAELEARFGSFGLRLYQRARGIDPRPVEANQQVQSISSEDTFA--EDLALDALAPA 260
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-K 227
+ +AE ++ RT+ LKLKTA F + TR+ T ++ S + + A L +
Sbjct: 261 IRLLAEKTWTATRRTERIARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALCQR 320
Query: 228 AELPVS--LRLIGLRVTQFNE 246
+LP S RL+G+ + F+E
Sbjct: 321 VDLPASTRYRLVGVGLAGFHE 341
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 140/264 (53%), Gaps = 9/264 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T G S IEIA++++ ++ +E LT SAGV+ N+ +AK+ SDINKPN
Sbjct: 110 SLDEAYLDVTNDKLNIG-SAIEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPN 168
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G +F+ P+ + F+ LP+ K G+GKVT ++ + G++T ++ +
Sbjct: 169 GLKFIGPS---GIENFMELLPVEKFFGVGKVTAEKMKKM-GLHTGADLKKLTEDEMHRHF 224
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
F+ + GL + R KS+ +E TF+ A + +L +IA ++ ++
Sbjct: 225 GKAGRFYYQIVRGLDNREVQPHRETKSMGAEDTFAYDLTTLAEMNAELDKIAVTVANRLE 284
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGL 239
+ L+GRT+TLK+K + F+ TR + I+ E I A LL E +RL+G+
Sbjct: 285 RYQLKGRTVTLKVKYSDFKQITRNQSSAAPIADLESITATAKQLLFTSFEEGQKVRLLGI 344
Query: 240 RVTQFNEDKVRAPSDPTQKTLTNF 263
++ F E +R D L F
Sbjct: 345 SLSNFGEVILRQKQDKQTGQLELF 368
>gi|398332321|ref|ZP_10517026.1| DNA polymerase IV [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 313
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 9/227 (3%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 93 SLDEGYLDVT--FNKKNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKP 150
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 151 NGLAVVLPDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-GIYTGKDLRAKNINELVQH 206
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G R RKS+ +E TF + D+ L ++L E+A + +
Sbjct: 207 FGKMGIYYYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRL 266
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 227
++ G+TLTLK+K F +RTR+ TL + I ++++ A+ LL+
Sbjct: 267 KERDFAGKTLTLKIKFQDFSLRTRSKTLSEPIFGADELYSVAAELLR 313
>gi|241766254|ref|ZP_04764150.1| DNA-directed DNA polymerase [Acidovorax delafieldii 2AN]
gi|241363643|gb|EER59041.1| DNA-directed DNA polymerase [Acidovorax delafieldii 2AN]
Length = 402
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 11/239 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T V + G +A ++ S++E GLTCS GVAPNRLLAK+ S+ NKPN
Sbjct: 166 GVDEVYIDFTHVPGGQREGGRVLARLIQKSIHERTGLTCSIGVAPNRLLAKMASEFNKPN 225
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G ++ + + I L +RKI GIG K E + R G+ T ++ Q L A F
Sbjct: 226 GISIVHEEDL--QEKIWPLHVRKINGIGPKAGEKLAR--LGVETIGQLAAQDEQWLIAHF 281
Query: 122 SHSTADFFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 177
ST + V G T + + + ER DKA L R ++ + ++
Sbjct: 282 GRSTGAWMHRVAWGRDDSPVVTESEPVSMSRETTFERDLHAVRDKAELSRIFTDLCQRVA 341
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRL 236
D+Q++G GRT+ +KL+ F+ TR TL + S I + A + LK +P+ RL
Sbjct: 342 EDLQRKGYAGRTIGIKLRYDDFKTATRDHTLPVPTNDSATIRRVAGLCLK-RVPLDRRL 399
>gi|39996716|ref|NP_952667.1| DNA polymerase IV [Geobacter sulfurreducens PCA]
gi|409912137|ref|YP_006890602.1| DNA polymerase IV [Geobacter sulfurreducens KN400]
gi|39983597|gb|AAR34990.1| DNA polymerase IV [Geobacter sulfurreducens PCA]
gi|298505728|gb|ADI84451.1| DNA polymerase IV [Geobacter sulfurreducens KN400]
Length = 409
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 139/266 (52%), Gaps = 11/266 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+T R G + + IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+
Sbjct: 103 SIDEAFLDLTGSLRLFGRADV-IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G ++P + +A + + + PIR + GIG TE L+ GI+TC ++ S +
Sbjct: 162 GLTIIPPENVA--SLMKTTPIRSLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSA 178
+ +G G+ + + + S + S T D L +++ L ++EM+
Sbjct: 219 AMGARLKQMGQGIDDSPVIPTTTEEEVKSV-SHSTTLDHDLTNKDDIHKYLLMLSEMVGR 277
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLI 237
++ +G+T+TL ++ A F +R TL ++ S DI + + LL +L +RL+
Sbjct: 278 RARRYKTKGKTVTLTIRYADFTTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLL 337
Query: 238 GLRVTQFNEDKVRAPSDPTQKTLTNF 263
G+ ++ + P P ++ LT
Sbjct: 338 GVAISNLVHASEQLPLFPEERRLTTL 363
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 136/258 (52%), Gaps = 31/258 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T V + + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+
Sbjct: 100 SLDEAYLDVT-VPKGGPAAATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPD 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ V+ R V F++ LP+ K+ G+GKV + L GI T ++ C
Sbjct: 159 GQCVIHPHR--VEAFLTPLPVNKVPGVGKVMQSKL-AALGIVTVGDLRD-----C----- 205
Query: 124 STADF---FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAE 171
S A+ F S GL G+ + +SISSE TF+ ED AL L +
Sbjct: 206 SEAELEARFGSFGLRLYQRARGIDERPVESDQPVQSISSEDTFA--EDLALEALEPAIRR 263
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAEL 230
+AE ++ RT+ LKLKTA F + TR+ T ++ S + ++ A L + +L
Sbjct: 264 LAEKTWDATRRTDRVARTVVLKLKTAQFRILTRSFTPERPPESLQTLIDIALALRQRVDL 323
Query: 231 PVS--LRLIGLRVTQFNE 246
P S RL+G+ ++ F+E
Sbjct: 324 PASTRYRLVGVGLSGFHE 341
>gi|260909969|ref|ZP_05916656.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635919|gb|EEX53922.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
Length = 365
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 130/256 (50%), Gaps = 19/256 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++GI ++IA+ ++ +Y+E LT SAGV+ N+ LAKV SD KP
Sbjct: 106 SLDEAYLDVTQ--NKQGIELAVDIAKRIKQEIYDELHLTASAGVSFNKFLAKVASDFRKP 163
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
NG V+ R M FI LPI G+G T + + N + L VF
Sbjct: 164 NGITVIHPSR--AMQFIDKLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFG 221
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIAEMLS 177
+ ++ + + RKS+ ERTF S + L LYR + E+ E L
Sbjct: 222 KAGETYY-NFARAIDPRPVEPHWVRKSVGCERTFEEDSSNPNVLLTELYRLVLELVERL- 279
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---L 234
++ +GRTLTLK+K F TR+ T + E+IL A LL +++ S +
Sbjct: 280 ---KRNDFKGRTLTLKVKFHDFTQITRSRTALHILRKKEEILPIAKALL-SDVDYSSHPI 335
Query: 235 RLIGLRVTQFNEDKVR 250
RL+G++V+ N+ R
Sbjct: 336 RLLGVQVSNINDGPHR 351
>gi|417643636|ref|ZP_12293673.1| DNA polymerase IV [Staphylococcus warneri VCU121]
gi|445059261|ref|YP_007384665.1| DNA polymerase IV [Staphylococcus warneri SG1]
gi|330685556|gb|EGG97202.1| DNA polymerase IV [Staphylococcus epidermidis VCU121]
gi|443425318|gb|AGC90221.1| DNA polymerase IV [Staphylococcus warneri SG1]
Length = 356
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 131/252 (51%), Gaps = 11/252 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA +R + E+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASKIANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I + G+GK +E ++ D I +++ K L +F
Sbjct: 162 GLTVI--DYNNVHDILMNLDIGEFPGVGKASEKVMHDN-QIFNGQDLYNKDEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ V G+ R RKS+ +ERTF+ V +D +L RK+ E++ + +
Sbjct: 219 KRGRGLYNKV-RGIDHNEVKSTRIRKSVGTERTFATDVNDDDEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G+T+T+K+KT FE ++ +L+ ++S DI A L + V +RLIG
Sbjct: 277 NKLQKSGKTVTVKIKTYQFETLSKQTSLRDPVNSETDIYNIAYSLYTDLKDPDVPIRLIG 336
Query: 239 LRVTQFNEDKVR 250
+ V + R
Sbjct: 337 VTVGNLEQSAYR 348
>gi|261334854|emb|CBH17848.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 570
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 17/253 (6%)
Query: 5 LDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
LDE L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKP
Sbjct: 229 LDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKP 288
Query: 63 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQ L + R VMT++ L +R + GIGK E +L+ + GI T ++ + LC +F
Sbjct: 289 NGQHDLNLHTRQDVMTYVRDLGLRSVPGIGKAMEALLKGL-GITTLSDIYNRRVELCYIF 347
Query: 122 SHSTADFFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLA 170
+ T F L +G+ GS + RKS+ SERTF + + K L +
Sbjct: 348 TEKTYRFLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVD 407
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KA 228
I +++K L R ++L+++ A++ R + L ++ S + + LL A
Sbjct: 408 FIFNSSYDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHA 467
Query: 229 ELPVSLRLIGLRV 241
+ L+G+R+
Sbjct: 468 AKYSDMSLLGMRL 480
>gi|148254691|ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]
gi|146406864|gb|ABQ35370.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. BTAi1]
Length = 354
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 4 SLDEAYLDITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE + GI +IA +R ++ E GL SAG++ N+ LAK+ SD
Sbjct: 101 SLDEAYLDVTE-----NLQGIPLARDIALRIRETIKTETGLNASAGISYNKFLAKLASDH 155
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 118
KPNGQ+V+ + F+ +LP+ K GIG T L GI T ++ ++ + L
Sbjct: 156 RKPNGQYVISPEMGP--AFVETLPVGKFHGIGPATAAKL-TALGIRTGLDIRRQSLAFLQ 212
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEML 176
F S A ++ + G+ R RKS+ +E TF VT+ L + +L + + +
Sbjct: 213 QHFGKSGA-YYYWISRGIDERPVRADRIRKSVGAETTF-VTDLTELEPMTAELRPLIDKV 270
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SL 234
+ G GRT+TLK+K + FE+ TR+ +L ++ D+ + A LL+AE+P+ +
Sbjct: 271 WRHCESTGKSGRTVTLKVKFSDFEIITRSRSLLSPVTGRTDLERLAVGLLQAEMPLPKPV 330
Query: 235 RLIGLRVTQFN 245
RL+G+ ++
Sbjct: 331 RLLGVALSSLQ 341
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E LT SAGV+ N+ LAK+ S +NKP
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPY 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 225
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLL 321
>gi|37525206|ref|NP_928550.1| DNA polymerase IV [Photorhabdus luminescens subsp. laumondii TTO1]
gi|81572650|sp|Q7N7B6.1|DPO4_PHOLL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|36784633|emb|CAE13533.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 351
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYL++T+ G S IA+E+R S+++E LT SAG+AP + LAK+ SDINKPN
Sbjct: 101 SLDEAYLNVTDSHHCYG-SATLIAQEIRQSIFDELQLTASAGIAPVKFLAKIASDINKPN 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQ+V+P DR+A FI LP+RKI G+GKV L ++ G+ TC ++ + ++
Sbjct: 160 GQYVIPPDRVA--DFIKVLPLRKIPGVGKVMVQRLANM-GLETCSDVQKYDVIVLVKQLG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 183
G+ R RKSI ERT + + + + E+ E L +++K
Sbjct: 217 KFGQVLWDRCHGIDERLVNPDRLRKSIGVERTLARDIHQ---WEQCTELIESLYLELEKR 273
Query: 184 ------GLRGRTLTLKLKTASFEVRTR 204
LR +KLK F++ T+
Sbjct: 274 LSNVKPDLRIARQGIKLKFDDFQLTTQ 300
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 135/245 (55%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP+ F+ LPI K G+GK + L G+ T E++L + L +
Sbjct: 172 KGLTLILPDQ---AQDFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDM 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSAD 179
F D + G+ ++ R RKSI SE+T+ + ++A + ++++ + + A
Sbjct: 228 FGRFGYDLYRK-ARGINASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVAS 286
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLI 237
++K G+T+ LK++ A FE T+ +TL++Y + I + A + E +RL+
Sbjct: 287 LEKNKKVGKTIVLKVRYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLL 346
Query: 238 GLRVT 242
G+ VT
Sbjct: 347 GVTVT 351
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 135/245 (55%), Gaps = 13/245 (5%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP
Sbjct: 119 SIDEAYLDVTE--NKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKP 176
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP+ F+ LPI K G+GK + L G+ T E++L + L +
Sbjct: 177 KGLTLILPDQ---AQDFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDM 232
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSAD 179
F D + G+ ++ R RKSI SE+T+ + ++A + ++++ + + A
Sbjct: 233 FGRFGYDLYRK-ARGINASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVAS 291
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLI 237
++K G+T+ LK++ A FE T+ +TL++Y + I + A + E +RL+
Sbjct: 292 LEKNKKVGKTIVLKVRYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLL 351
Query: 238 GLRVT 242
G+ VT
Sbjct: 352 GVTVT 356
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 21/251 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI S I+IA E++ ++ +E LT SAGV+ N+ +AKV SD++KP
Sbjct: 110 SLDEAYLDVTE--DKLGIGSAIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKP 167
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCA 119
+G F+ P+ + FI LP+ K G+GKVT ++ + G++ ++ L +G L+
Sbjct: 168 DGLTFIGPSK---IERFIEQLPVEKFHGVGKVTAEKMK-IRGLHKGADLKKLTEGELV-H 222
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY---RKLAEIAEML 176
+F S FF + G+ + KSI +E TFS ED LL +L +IA +
Sbjct: 223 LFGKS-GHFFYKIVRGIDHRPVQANQETKSIGAEDTFS--EDLELLTEMNEELCKIAGTV 279
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--- 233
M++ L GRTLT+K+K + F+ TR+ + + I + I+ A LL A +S
Sbjct: 280 CNRMEQHRLYGRTLTIKIKFSDFKQITRSRSFSEPIRELDMIISIAEALLVAA-DISGKK 338
Query: 234 LRLIGLRVTQF 244
+RL+G+ ++ F
Sbjct: 339 VRLLGISISNF 349
>gi|397780686|ref|YP_006545159.1| DNA polymerase IV (archaeal DinB-like DNA polymerase)
[Methanoculleus bourgensis MS2]
gi|396939188|emb|CCJ36443.1| DNA polymerase IV (archaeal DinB-like DNA polymerase)
[Methanoculleus bourgensis MS2]
Length = 361
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 143/272 (52%), Gaps = 27/272 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSV----YEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+T AE L T++ E GLTCS G+AP ++ AK+ SD
Sbjct: 108 SIDEAYLDVTSA------GSFPAAEALATAIKRDIREAEGLTCSIGIAPGKVAAKIASDY 161
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG--SLL 117
KP+G V+ D +A F++ LP+ KI G+GK T L + G+ T ++ + +L+
Sbjct: 162 WKPDGLTVVSPDEVA--AFLAPLPVGKIPGVGKKTGEDLAGM-GVLTIGDLARSDVQALI 218
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFR-KSISSERTFSV-TEDKALLYRKLAEIAEM 175
+ L+ G+ QAR KS+S E TF T D LL +A++A+
Sbjct: 219 ARIGRSGIRLHRLARGIDDAEV---QAREGCKSVSRETTFDEDTADPDLLSATIADLADE 275
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSL 234
++ + +GLR RT+T+K++ FE TR++TL ++ + E I + A LL L +
Sbjct: 276 VAGALAADGLRCRTVTVKVRYRGFETHTRSLTLDRFTADPEVIRRTAGDLLLPFLNGTEV 335
Query: 235 RLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTS 266
RL+G+R++ F + + R Q ++ F+ S
Sbjct: 336 RLLGVRLSGFEDSRTR------QTSIDEFLPS 361
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + ++ EIAEE+R + E GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 124 SLDEAYLDVTENLKGMELA-TEIAEEIRARIRAETGLTASAGVSYNKFLAKIASDQRKPD 182
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ LP++K G+G T ++ + GI T ++ +
Sbjct: 183 GLFVITPKHGP--EFVQMLPVKKFHGVGPATAEKMKRL-GIETGADLKARDLAFLQQHFG 239
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKS+ +E TF D L + + + +
Sbjct: 240 KSGPYFYWIARGIDGREVKPDRIRKSVGAEDTFREDIHDLETAREGLRPLMDKVWHYCEA 299
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLR 240
+RG+T+TLK+K + F TR+ TL ++S+ ++ + +LL + P + +RL+G+
Sbjct: 300 GSIRGKTVTLKVKWSDFTQITRSKTLPAPVASAAEMAQIVDLLLSSIFPAAKGIRLLGVT 359
Query: 241 VTQFN 245
++
Sbjct: 360 LSSLR 364
>gi|91223441|ref|ZP_01258706.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
gi|91191527|gb|EAS77791.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
Length = 356
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 134/262 (51%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 107 SLDEAYLDVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPN 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V I SLP+ I G+GKV+ L G CE++ L F
Sbjct: 166 GQFVIPPEK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFG 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ + R RKS+ ERTFS V E+K LY +L +
Sbjct: 223 RQGASLW-QRSHGIDNREVVVERERKSVGVERTFSQNIATYDECWQVIEEK--LYPELEK 279
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E S D + K+G +K+K A F++ T + Q + + +L+ +LK
Sbjct: 280 RLERASPDKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKR 329
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V ED+ R
Sbjct: 330 QNGREIRLLGLNVMLKPEDQAR 351
>gi|295397332|ref|ZP_06807424.1| DNA-directed DNA polymerase IV [Aerococcus viridans ATCC 11563]
gi|294974406|gb|EFG50141.1| DNA-directed DNA polymerase IV [Aerococcus viridans ATCC 11563]
Length = 424
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 133/259 (51%), Gaps = 33/259 (12%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEA+LD+T+ ++GI +++A+E++ ++Y+E LTCS GV+ N+ +AK+ SD KP
Sbjct: 120 SIDEAFLDVTD--NKKGIPYAMDVAKEIQETIYKELNLTCSIGVSYNKFIAKLASDYQKP 177
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V+ R + F+ LPI G+G + + ++ + G+ L +
Sbjct: 178 FGMTVITPKR--AIPFLEQLPIEDFYGVGTRSAEKMHEL--------AIYTGADLKKLSQ 227
Query: 123 HSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYR------KL 169
+F GL L G + P R RKSI ERTF LY L
Sbjct: 228 DECIQYFGKAGLALYERVRGVDDRPVKVTRIRKSIGKERTFY-----PFLYHDNEVEETL 282
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 229
++A +S + ++G+ G+ +TLK + A FE TR +L IS S+DI +A L +
Sbjct: 283 RKLANSVSDALSEKGMHGKVVTLKFRNADFETVTRQTSLVDAISDSQDIYFYALDLWQTY 342
Query: 230 LPVS--LRLIGLRVTQFNE 246
VS +RL+G+ V+ ++
Sbjct: 343 GDVSQGIRLLGITVSDLSQ 361
>gi|161594047|ref|NP_904033.2| DNA polymerase IV [Chromobacterium violaceum ATCC 12472]
Length = 379
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ERG S +AE +R + +E G+T SAG+APN+ LAKV SD NKP+
Sbjct: 105 SLDEAYLDVTGQPHERG-SATLMAEAIRRQIRDEVGITASAGIAPNKFLAKVASDWNKPD 163
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ+++ P D + F++ LP+ KI G+G+VT L + GI +C ++ + +F
Sbjct: 164 GQYLIRPRD---IDAFVAVLPVEKIHGVGRVTAERLHRL-GIRSCGDLRRWSP--ADLFR 217
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
H S + L++ G R RK+IS E T++ D A KL E+ + L A
Sbjct: 218 HFGSFGERLLALAHGRDERPVSTDRSRKTISVEETYAQDLPDLASCLSKLPELVDRLQAR 277
Query: 180 MQKEGLRG-RTLTLKLKTASF 199
+ + G + L++KLK F
Sbjct: 278 LARSGSPAFKGLSVKLKFDDF 298
>gi|451970837|ref|ZP_21924061.1| DNA polymerase IV [Vibrio alginolyticus E0666]
gi|451933254|gb|EMD80924.1| DNA polymerase IV [Vibrio alginolyticus E0666]
Length = 356
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 134/262 (51%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 107 SLDEAYLDVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPN 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V I SLP+ I G+GKV+ L G CE++ L F
Sbjct: 166 GQFVIPPEK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFG 222
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ + R RKS+ ERTFS V E+K LY +L +
Sbjct: 223 RQGASLW-QRSHGIDNREVVVERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEK 279
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E S D + K+G +K+K A F++ T + Q + + +L+ +LK
Sbjct: 280 RLERASPDKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKR 329
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V ED+ R
Sbjct: 330 QNGREIRLLGLNVMLKPEDQAR 351
>gi|407420127|gb|EKF38477.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 609
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 18/290 (6%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 251 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 310
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ +LP+R + GIG+ TE IL + GIN E+ + LC
Sbjct: 311 KPNGQHELRLRTRQDVMEFMKNLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELCY 369
Query: 120 VFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKL 169
+ + T F L +G+ GS T +A RK+I ERTF + L +
Sbjct: 370 ILTEKTFCFLLGSSMGVVRWMDTDTSDGSERTSEAE-RKTIGMERTFRNLSSRLELQQIA 428
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-- 227
+ +++ L R + LK K ASF+V + L ++ E + + LL
Sbjct: 429 HSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRI 488
Query: 228 AELPVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 275
A+ LRL+G+R+ + Q+TL + + ++S + VG
Sbjct: 489 ADQYAFLRLVGVRLADIITKSEYEALQRGGLQRTLLQYCSRSNSSYRAVG 538
>gi|296446214|ref|ZP_06888161.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
gi|296256251|gb|EFH03331.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
Length = 357
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 17/244 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R+ S IAEE+R + EE GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 103 SLDEAYLDVTE-NRKAMASATRIAEEIRARIKEETGLTASAGVSYNKFLAKLASDHRKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 122
G FV+ +M +F++ L + + G+G T + + GI T ++ Q L F
Sbjct: 162 GLFVV-TPQMG-PSFVADLAVGRFHGVGPATTKKM-NALGIETGRDLRAQSLEFLQRNFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLS 177
S A F+ + G+ R RKSI +E TF+ E +A LA I +
Sbjct: 219 KSGA-FYYGIARGVDERPVRPDRIRKSIGAEVTFARDLHAHEEARA----ALAPIVARVW 273
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLR 235
+ Q+ GRT+T+K+K A F TR TL ++ + ++ + A L+ P +R
Sbjct: 274 SHCQRAATSGRTVTVKVKYADFRQITRRSTLAAPVAGAAELERSALALMHPLFPSPAGVR 333
Query: 236 LIGL 239
L+G+
Sbjct: 334 LLGV 337
>gi|47096619|ref|ZP_00234207.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|254912534|ref|ZP_05262546.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936861|ref|ZP_05268558.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|386047627|ref|YP_005965959.1| DNA polymerase IV [Listeria monocytogenes J0161]
gi|47015004|gb|EAL05949.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609456|gb|EEW22064.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|293590519|gb|EFF98853.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534618|gb|AEO04059.1| DNA polymerase IV [Listeria monocytogenes J0161]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|257056496|ref|YP_003134328.1| DNA repair nucleotidyltransferase/DNA polymerase [Saccharomonospora
viridis DSM 43017]
gi|256586368|gb|ACU97501.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Saccharomonospora viridis DSM 43017]
Length = 415
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 10/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+ R G + EI LR V E G+TCS GVA + +AK+ S + KP+
Sbjct: 125 SLDEAFLDVGGALRRLGATATEIGARLRARVEAEHGVTCSVGVAGMKFVAKLASGMAKPD 184
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFS 122
G V+P + ++F+ LP+ + G+G T +LR G++T ++ L
Sbjct: 185 GMVVVPVEE--TVSFLHPLPVSALWGVGPKTAEVLRG-HGLHTIADIAATPPDRLRRWVG 241
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+TA+ ++ G KS+ +ERTF D+ R+L +++E +++ ++
Sbjct: 242 VATAEQLHALAHGRDERRVVPETEEKSLGAERTFDTDLSDREAQRRQLLDLSEKVASTLR 301
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIG 238
GLRGRT+++K++ + F TRA TL + +I A LL+ PV RL+G
Sbjct: 302 HRGLRGRTVSIKVRFSDFRTVTRARTLPSATDVAREIHSTAVALLEEMGTTAPV--RLLG 359
Query: 239 LRV 241
+RV
Sbjct: 360 VRV 362
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|46908202|ref|YP_014591.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. F2365]
gi|405753195|ref|YP_006676660.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
gi|67460308|sp|Q71Y46.1|DPO4_LISMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|46881472|gb|AAT04768.1| putative DNA-damage-inducible protein P [Listeria monocytogenes
serotype 4b str. F2365]
gi|404222395|emb|CBY73758.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|404414053|ref|YP_006699640.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
gi|404239752|emb|CBY61153.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 36/259 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD++E + GI S IEIA+E++ ++ E LT SAGV+ N+ +AK+ SD+NKP
Sbjct: 103 SLDEAYLDVSE--DKLGIGSAIEIAKEIKNAIRTELHLTASAGVSTNKFVAKIASDMNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G F+ P+ + FI +LPI+K GIGKVT +N+ + + KG+ L +
Sbjct: 161 DGLTFIGPSR---IEAFIEALPIQKFYGIGKVTAK------KMNSLQ--IYKGADLKKLS 209
Query: 122 SHSTADFFLSVG-----LGLGSTNTPQARFR--KSISSERTFS--VTEDKALLYRKLAEI 172
+ F VG + G P FR KSI +E TF+ + E++ L+ +L I
Sbjct: 210 KDHLLNLFGKVGNFYYNIVRGIDERPVQTFRELKSIGAEDTFTSDLMEEQELI-MELKLI 268
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSE------DILKHASVLL 226
A+ + ++ + + G TLTLK+K A F+ TR T I ++ D+LK A +
Sbjct: 269 AQRVVKRLEAKQVLGSTLTLKIKFADFKQITRNYTHSNLIHLNQVEAFGIDLLKAAPIDG 328
Query: 227 KAELPVSLRLIGLRVTQFN 245
K +RL+GL V+ FN
Sbjct: 329 K-----PIRLLGLTVSNFN 342
>gi|402822482|ref|ZP_10871964.1| DNA-directed DNA polymerase, partial [Sphingomonas sp. LH128]
gi|402263987|gb|EJU13868.1| DNA-directed DNA polymerase, partial [Sphingomonas sp. LH128]
Length = 257
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 9/244 (3%)
Query: 7 EAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 65
EAYLD+T RGI + A+++R ++ EE GLT SAG++ N+ LAK+ SD KPNGQ
Sbjct: 1 EAYLDVT--ANRRGIETAWRTAKQIRAAILEETGLTASAGISYNKFLAKLASDHRKPNGQ 58
Query: 66 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 125
F + D +I LP+ + G+G VT ++ + GI T ++ K S+
Sbjct: 59 FAVTPDMGPA--WIEVLPVSRFHGVGPVTADKMKRL-GIATGADLRAKSFEFLQQHFGSS 115
Query: 126 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEG 184
A ++ ++ G R RKS SE TF D A + + +AE + + G
Sbjct: 116 AGWYYAISRGQDDRPVNPDRVRKSSGSETTFDHDLTDPAAIEAGVLRMAEDVWNWCESRG 175
Query: 185 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 242
GRT+T+K+K F TR+ + +++ + + K A L++ PV+ +RL+G+ V+
Sbjct: 176 SFGRTVTVKIKYGDFRQITRSRSQTGAVTTRDALRKSALDLVRLVFPVAKGIRLVGVTVS 235
Query: 243 QFNE 246
F +
Sbjct: 236 NFTD 239
>gi|424714844|ref|YP_007015559.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
gi|424014028|emb|CCO64568.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
Length = 368
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 116 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 173
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 174 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 228
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 229 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 286
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 287 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIR 346
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 347 LIGLTVT 353
>gi|317125079|ref|YP_004099191.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
gi|315589167|gb|ADU48464.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
Length = 436
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 138/266 (51%), Gaps = 22/266 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+ R G + IAE LR ++ +E G+TCS GVA + +AK+ S + KP+
Sbjct: 120 SLDEAFLDVAGAVRRLGPPTL-IAERLRDTIADEQGITCSVGVASTKFVAKLASALAKPD 178
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHI----LRDVFGI-NTCEEMLQKGSLL 117
G V+P R ++FI LP+ I G+G K EH+ LR V + +T E LQ+ L
Sbjct: 179 GLIVVP--RAETVSFIHQLPVGAIWGVGDKTEEHLHRLGLRTVADLAHTPVETLQRA--L 234
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEML 176
V + D G + R KSI ++ TF+ +D ++R+L +A+
Sbjct: 235 GDVAGRNLHDL----AWGRDPRSVVPERREKSIGADETFAHDIDDPVRIHRELLRLADRT 290
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSL 234
+A + G+ GRT+++K++ + F TRA TL+ + S +I A L A +
Sbjct: 291 AARARSAGMAGRTISIKVRFSDFTTITRAKTLRHHTDVSREIFATAVELFDRLALQRARI 350
Query: 235 RLIGLRVTQFNEDKVRAPSDPTQKTL 260
RL+G+R+ E V A + P Q L
Sbjct: 351 RLVGVRL----EGLVPATAAPIQSAL 372
>gi|345886325|ref|ZP_08837580.1| hypothetical protein HMPREF0178_00354 [Bilophila sp. 4_1_30]
gi|345038505|gb|EGW42939.1| hypothetical protein HMPREF0178_00354 [Bilophila sp. 4_1_30]
Length = 398
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 129/247 (52%), Gaps = 9/247 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 60
AS+DEAYLD T + ER +E +A ++ V + GLTCS G+AP + LAK+ SD+N
Sbjct: 100 ASVDEAYLDATGL--ERLFGPVEDMARRIKREVKKVTGGLTCSIGLAPVKFLAKIASDLN 157
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KP+G +L D++A F+ SLP+ +I G+GK L+ + I T ++ + +
Sbjct: 158 KPDGLSILYPDKLA--AFLQSLPVEQIPGVGKTMVRELQSL-AIRTAGDVPRYPKVFWER 214
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
G+ KS S+E TF + T D L L A+ +
Sbjct: 215 RFGKAGITLYERAQGIDPREVEPYTPPKSESAETTFDIDTRDIGFLKSWLFRHADRIGRT 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIG 238
++K+ L+GR +TLK+K A F + TR VTL S++E I + A LL L +RLIG
Sbjct: 275 LRKQRLQGRVITLKIKYADFRIITRRVTLDAPTSATETIYETACDLLDHMRLEEKIRLIG 334
Query: 239 LRVTQFN 245
+ V+ F+
Sbjct: 335 VGVSGFD 341
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|257138591|ref|ZP_05586853.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 378
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 108 SLDEAYLDVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPD 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL
Sbjct: 167 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLH 219
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D A L + AEI +L
Sbjct: 220 HEFGAFGRRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALL 277
Query: 177 SADMQKEGLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPV 232
A +++ G R L +K++ A F+ T + ++ + D S+L K A
Sbjct: 278 DARIERAGAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQ 332
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ V + +ED
Sbjct: 333 AVRLLGVGV-RIDED 346
>gi|254827139|ref|ZP_05231826.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|386044283|ref|YP_005963088.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404411276|ref|YP_006696864.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
gi|258599522|gb|EEW12847.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|345537517|gb|AEO06957.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404231102|emb|CBY52506.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|47093298|ref|ZP_00231068.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 4b H7858]
gi|226224573|ref|YP_002758680.1| DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV))
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825535|ref|ZP_05230536.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|254931859|ref|ZP_05265218.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|254992047|ref|ZP_05274237.1| DNA polymerase IV [Listeria monocytogenes FSL J2-064]
gi|255522144|ref|ZP_05389381.1| DNA polymerase IV [Listeria monocytogenes FSL J1-175]
gi|300763720|ref|ZP_07073717.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|386732710|ref|YP_006206206.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404281580|ref|YP_006682478.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404287398|ref|YP_006693984.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750322|ref|YP_006673788.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|405756128|ref|YP_006679592.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|406704753|ref|YP_006755107.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|424823729|ref|ZP_18248742.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|259645684|sp|C1KWR9.1|DPO4_LISMC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|47018318|gb|EAL09081.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877035|emb|CAS05744.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293583411|gb|EFF95443.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|293594777|gb|EFG02538.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|300515456|gb|EFK42506.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|332312409|gb|EGJ25504.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|384391468|gb|AFH80538.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404219522|emb|CBY70886.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|404225328|emb|CBY76690.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|404228215|emb|CBY49620.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404246327|emb|CBY04552.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361783|emb|CBY68056.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|441471756|emb|CCQ21511.1| DNA polymerase IV [Listeria monocytogenes]
gi|441474889|emb|CCQ24643.1| DNA polymerase IV [Listeria monocytogenes N53-1]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|254369305|ref|ZP_04985317.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
gi|157122255|gb|EDO66395.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
Length = 349
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 137/244 (56%), Gaps = 17/244 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPN
Sbjct: 104 SLDEAYLDVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--F 121
G +V+ + V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F
Sbjct: 163 GLYVVTPKQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSA 178
+ + + G+ + R RKSIS E T+ ED L KL + + L++
Sbjct: 219 GKFGSSLY-NYARGIDNREVNPVRIRKSISVENTY--LEDLKTLGACLEKLPSLYDKLTS 275
Query: 179 DMQKEGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 237
M +E + + +K F +T + K + +++LK+ + L + +RLI
Sbjct: 276 RMTEEHYKSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLI 332
Query: 238 GLRV 241
G+ V
Sbjct: 333 GIGV 336
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 20/255 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPN
Sbjct: 104 SLDEAYLDVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPN 162
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQFV+ PN+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 163 GQFVIKPNE---VSEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQF 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAE 174
G+ R RKS+ E+T ++ + L LY +L E
Sbjct: 219 GKAGKRIWDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASELLNNLYDELIRRLE 278
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVS 233
+S ++ R + +KLK F+V T T L + S + + + K S
Sbjct: 279 RVSCNIPLSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLFPQIFMRAKGR---S 333
Query: 234 LRLIGLRVTQFNEDK 248
+RLIGL V E+K
Sbjct: 334 IRLIGLHVNLPEENK 348
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|161723133|ref|YP_442389.2| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 392
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 122 SLDEAYLDVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPD 180
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL
Sbjct: 181 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLH 233
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D A L + AEI +L
Sbjct: 234 HEFGAFGRRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALL 291
Query: 177 SADMQKEGLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPV 232
A +++ G R L +K++ A F+ T + ++ + D S+L K A
Sbjct: 292 DARIERAGAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQ 346
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ V + +ED
Sbjct: 347 AVRLLGVGV-RIDED 360
>gi|365090420|ref|ZP_09328468.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
gi|363416519|gb|EHL23629.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
Length = 405
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ S++E+ GLTCS GVAPNRLLAK+ S+ NKPN
Sbjct: 126 GVDEVYIDFTDVPGGQREGGRVLARLIQKSIFEKTGLTCSIGVAPNRLLAKMASEFNKPN 185
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G ++ + + I L +RKI GIG K E + R GI T ++ Q L F
Sbjct: 186 GISIVYEEDL--QGKIWPLNVRKINGIGPKAGEKLAR--LGIETIGQLAAQDAQWLMGHF 241
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLS 177
ST + V G + S+S E TF D+A L ++ + ++
Sbjct: 242 GKSTGAWMHRVAWGRDESPVVTESEPVSMSRETTFDRDLHAVRDRAELSAIFTDLCQRVA 301
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
D+Q++G RT+ +KL+ F + TR T Y + I A LK L LRL
Sbjct: 302 EDLQRKGYVARTIGIKLRYEDFRIATRDHTANTYTADGATIRHLAGQCLKRVPLDKRLRL 361
Query: 237 IGLRVT 242
+G+R +
Sbjct: 362 LGVRAS 367
>gi|314936051|ref|ZP_07843400.1| DNA polymerase IV [Staphylococcus hominis subsp. hominis C80]
gi|313655868|gb|EFS19611.1| DNA polymerase IV [Staphylococcus hominis subsp. hominis C80]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 133/248 (53%), Gaps = 11/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEAYLDIT + + S +IA +R ++ + GLT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 ALDEAYLDITHLVKPHR-SASKIASNIRKDIFNKTGLTSSAGVSYNKYLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ + V + +L I G+GK ++ I+ + I T +++ K L F
Sbjct: 162 GMMVIHYEN--VHDILMNLDIGDFPGVGKASKKIMHE-HDIYTGKDLYSKSEFELIRWFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ V G+ + +R RKS+ +ERTFS + +D+A+L +K+ E++ S +
Sbjct: 219 KKGRGLYQKV-RGIDDSEVKASRIRKSVGTERTFSTDINDDEAIL-QKIWELSGKTSERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
+ G T+T+K+KT FE ++ +L++ +S DI A L + V +RLIG
Sbjct: 277 TQLQKSGTTVTVKIKTHRFETYSKQRSLREAVSKDIDIYNIAYDLYHELKDPDVPIRLIG 336
Query: 239 LRVTQFNE 246
+ V +
Sbjct: 337 VTVGHLEQ 344
>gi|167581305|ref|ZP_02374179.1| DNA polymerase IV [Burkholderia thailandensis TXDOH]
Length = 378
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 108 SLDEAYLDVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPD 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL
Sbjct: 167 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLH 219
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D A L + AEI +L
Sbjct: 220 HEFGAFGRRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALL 277
Query: 177 SADMQKEGLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPV 232
A +++ G R L +K++ A F+ T + ++ + D S+L K A
Sbjct: 278 DARIERAGAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQ 332
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ V + +ED
Sbjct: 333 AVRLLGVGV-RIDED 346
>gi|319892936|ref|YP_004149811.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|386318846|ref|YP_006015009.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
gi|317162632|gb|ADV06175.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|323464017|gb|ADX76170.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
Length = 356
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 13/242 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IAE +R +Y + LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAEYIRRDIYNQTQLTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + L I GIGK ++ + GI +++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMQLDIGDFPGIGKASKEKMH-AKGIYNGQDLYEKSERELVYLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ V G R RK++ +ERTFS+ T D + +K+ ++E ++ ++
Sbjct: 219 KRGHQLYQRV-RGYDDREVKAERIRKTVGAERTFSLDTNDDEEILQKIEMLSEKIAQRLE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLI 237
K GRT+T+K+KT FE ++ +L + +++I + A L +AE+P+ RL+
Sbjct: 278 KMNQAGRTVTVKIKTHRFENFSKQQSLITPVQDADEIYRIAYDLYYELKEAEVPI--RLV 335
Query: 238 GL 239
G+
Sbjct: 336 GV 337
>gi|422413513|ref|ZP_16490472.1| DNA polymerase IV [Listeria innocua FSL S4-378]
gi|313618089|gb|EFR90198.1| DNA polymerase IV [Listeria innocua FSL S4-378]
Length = 356
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYREIGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYQLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>gi|34105668|gb|AAQ62022.1| DNA-damage-inducible protein P [Chromobacterium violaceum ATCC
12472]
Length = 496
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ERG S +AE +R + +E G+T SAG+APN+ LAKV SD NKP+
Sbjct: 222 SLDEAYLDVTGQPHERG-SATLMAEAIRRQIRDEVGITASAGIAPNKFLAKVASDWNKPD 280
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ+++ P D + F++ LP+ KI G+G+VT L + GI +C ++ + +F
Sbjct: 281 GQYLIRPRD---IDAFVAVLPVEKIHGVGRVTAERLHRL-GIRSCGDLRRWSP--ADLFR 334
Query: 123 H--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 179
H S + L++ G R RK+IS E T++ D A KL E+ + L A
Sbjct: 335 HFGSFGERLLALAHGRDERPVSTDRSRKTISVEETYAQDLPDLASCLSKLPELVDRLQAR 394
Query: 180 MQKEGLRG-RTLTLKLKTASF 199
+ + G + L++KLK F
Sbjct: 395 LARSGSPAFKGLSVKLKFDDF 415
>gi|71415110|ref|XP_809633.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874045|gb|EAN87782.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 604
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 16/255 (6%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 250 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 309
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ LP+R + GIG+ TE IL + GIN E+ + LC
Sbjct: 310 KPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELCY 368
Query: 120 VFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKL 169
+ + T F L +G+ GS T +A RKSI ERTF + L +
Sbjct: 369 ILTEKTFCFLLGSSMGVVRWMDADTNDGSERTTEAE-RKSIGMERTFRNLSSRLELQQIA 427
Query: 170 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-- 227
+ +++ L R + LK K ASF+V + L ++ E + + LL
Sbjct: 428 HSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRI 487
Query: 228 AELPVSLRLIGLRVT 242
A+ LRL+G+R+
Sbjct: 488 ADQYAFLRLVGVRLA 502
>gi|71756019|ref|XP_828924.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834310|gb|EAN79812.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 17/253 (6%)
Query: 5 LDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
LDE L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKP
Sbjct: 229 LDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKP 288
Query: 63 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NGQ L + R VMT++ L +R + GIGK E +L+ + GI T ++ + LC +F
Sbjct: 289 NGQHDLNLHTRGDVMTYVRDLGLRSVPGIGKAMEALLKGL-GITTLSDIYNRRVELCYIF 347
Query: 122 SHSTADFFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLA 170
+ T F L +G+ GS + RKS+ SERTF + + K L +
Sbjct: 348 TEKTYRFLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVD 407
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KA 228
I +++K L R ++L+++ A++ R + L ++ S + + LL A
Sbjct: 408 FIFNSSYDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHA 467
Query: 229 ELPVSLRLIGLRV 241
+ L+G+R+
Sbjct: 468 AKYSDMSLLGMRL 480
>gi|302528486|ref|ZP_07280828.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
gi|302437381|gb|EFL09197.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
Length = 415
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 6/241 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA+LD+ R G + + +R V E G++CS GVA + +AK+ S + KP+
Sbjct: 127 SLDEAFLDVGGALRRLGSTPGALGARIRERVQAEHGISCSVGVAKVKFVAKLASGMAKPD 186
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G ++P + F+ LP+ + G+GK TE LR G +T ++ + L
Sbjct: 187 GMVIVPAAE--TLEFLHPLPVSALWGVGKRTEEQLRQ-HGWHTIADIAATPPARLRRAVG 243
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ D ++ G KSI +E TF V D+ L +L ++E + A ++
Sbjct: 244 RAAGDHLWALANGHDDRAVEPESAEKSIGAEHTFDVDVLDRGELSVELLRLSERVGATLR 303
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 240
GLRGRT+++K++ A F TRA T+ + DI + A LL P ++RLIG+R
Sbjct: 304 SRGLRGRTVSIKVRFADFRTITRARTVLSATDVARDIHRTAVELLTEHAPTGAVRLIGVR 363
Query: 241 V 241
V
Sbjct: 364 V 364
>gi|294673256|ref|YP_003573872.1| DNA polymerase IV [Prevotella ruminicola 23]
gi|294473448|gb|ADE82837.1| putative DNA polymerase IV [Prevotella ruminicola 23]
Length = 368
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 147/284 (51%), Gaps = 40/284 (14%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE +RGI G++IA E++ + E GLT SAGV+ + LAK+ SD KP
Sbjct: 99 SLDEAFLDVTE--NKRGIELGVDIAREIKQRIRETTGLTASAGVSYCKFLAKIASDWRKP 156
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G V+ DR + FI+ L + KI G+G+ T + + GI T + L+ SL +
Sbjct: 157 DGLTVIHPDR--ALDFIAQLKVEKIWGVGQKTAEKMHRM-GIFTGMD-LRNTSL-----A 207
Query: 123 HSTADF------FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKAL---LYRKLAE 171
T DF F G+ + RKS+S E+TF ++E+ A+ LY+ + E
Sbjct: 208 RLTQDFGKMGQVFYDFARGIDTRPVISEWERKSVSCEQTFETDISENAAVTIHLYQTVME 267
Query: 172 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 231
+ + +K GRTLTLK+K F+ TR++T+ + + +DIL A L++
Sbjct: 268 LVRRI----EKNDFEGRTLTLKVKFLDFKQITRSMTVDHVLCTKDDILPLAKQLMQGVEF 323
Query: 232 VS--LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI 273
S +RL+GL V S+P L+ + S K I
Sbjct: 324 HSHPIRLLGLGV-----------SNPGSHPLSGGLASRQGEKWI 356
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 23/255 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKLGIKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP D F+ LPI K G+GK + L + G+ T ++L+ + L +
Sbjct: 172 KGLTLILPED---AQDFLKKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDL 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI SERT+ LLY ++++ A+
Sbjct: 228 FGRFGYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQ 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ +Q+ GRT+ LK++ + F T+ +TL + E I + A + + E +
Sbjct: 282 RVVDTLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKL 341
Query: 233 SLRLIGLRVTQFNED 247
+RL+G+ VT ++
Sbjct: 342 GVRLLGVTVTGLEDN 356
>gi|91789542|ref|YP_550494.1| DNA-directed DNA polymerase [Polaromonas sp. JS666]
gi|91698767|gb|ABE45596.1| DNA-directed DNA polymerase [Polaromonas sp. JS666]
Length = 422
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ +++E+ GLTCS GVAPN+LLAK+ S+ +KPN
Sbjct: 142 GVDEVYIDFTDVPGGQREGGRVLARLIQKAIFEKTGLTCSVGVAPNKLLAKMASEFDKPN 201
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
G ++ + + I L +RKI GIG K E + R I+T E+ Q S L A F
Sbjct: 202 GISIVYEEDL--QPRIWPLNVRKINGIGPKAGEKLAR--LHIHTIGELAAQDPSFLIANF 257
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLS 177
+T + G S+S E TF DKA+L ++ L+
Sbjct: 258 GKATGAWMHEAAWGRDDRPVVTESEPVSMSRETTFDRDLHAVRDKAVLGAIFTDLCSKLA 317
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRL 236
D+Q++G +T+ +KL+ F + TR T Y + + I K A + LK L LRL
Sbjct: 318 QDLQRKGYVAKTIGIKLRYDDFRIATRDQTADSYTADGQAIRKLAGLCLKRVPLEKKLRL 377
Query: 237 IGLRVT 242
+G+R +
Sbjct: 378 LGVRAS 383
>gi|414075047|ref|YP_007000264.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974967|gb|AFW92431.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
Length = 346
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 22/258 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 94 AASIDEAYLDVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 152
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCA 119
P+G ++P++ + F++ LP+ K G+GK T L G T ++ + + L
Sbjct: 153 PHGLTLIMPDE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAE 208
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + F G+ ++ R RKS+ ERT+ LLY +L +I+
Sbjct: 209 KFGIYGWELFQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKIS 262
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
+ +S +++ L+G + LKL+ + F T+ ++ + + S EDI + A + + +
Sbjct: 263 KQVSESLKRHQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDE 322
Query: 231 PVSLRLIGLRVTQFNEDK 248
+ +RL+G+ V+ F K
Sbjct: 323 SLGVRLLGVTVSGFGVQK 340
>gi|417918196|ref|ZP_12561748.1| DNA polymerase IV [Streptococcus parasanguinis SK236]
gi|342828651|gb|EGU63017.1| DNA polymerase IV [Streptococcus parasanguinis SK236]
Length = 368
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 136/257 (52%), Gaps = 33/257 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+TE + + S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE-NKIQSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPR 172
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP D F+S + I K G+GK T L ++ GI T G+ L A+
Sbjct: 173 GLTVVLPED---AEDFLSQMDIAKFHGVGKKTVERLHEM-GIYT-------GADLLAIPE 221
Query: 123 HSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEI 172
+ D F G L G N+P R RKSI ERT+ + LLY + L EI
Sbjct: 222 MTLIDRFGRFGYDLFRKARGIHNSPVKNHRIRKSIGKERTY-----RKLLYAEDDILEEI 276
Query: 173 AEM---LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-- 227
A + ++ ++K G +G+TL LK++ F T+ +TL + +E I + A + +
Sbjct: 277 ANLSSKVAQSLEKHGKQGKTLVLKVRYGDFTTLTKRMTLTEPTREAERINRSARHIFQEI 336
Query: 228 AELPVSLRLIGLRVTQF 244
+ +RL+G+ +T F
Sbjct: 337 ESINTGIRLLGVTMTNF 353
>gi|418669590|ref|ZP_13230970.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|421120235|ref|ZP_15580547.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410346725|gb|EKO97668.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410754665|gb|EKR16314.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 362
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 16/255 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDE YLD+T ++ + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKPN
Sbjct: 103 SLDEGYLDVT-FNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPN 161
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 162 GLTVVLPDD---VISFIDPLPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
++ + G +R RKS+ +E TF + D L ++L ++A ++ ++
Sbjct: 218 GKMGIYYYKISRGEDERMVQSSRERKSLGAENTFDRDKLDYDDLLKQLKDVAVVVERRLE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--------- 232
K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 278 KKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIK 337
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 338 AIRLLGISLSHPNSE 352
>gi|417769363|ref|ZP_12417279.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418680743|ref|ZP_13241985.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418705953|ref|ZP_13266805.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418716432|ref|ZP_13276430.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
08452]
gi|418731148|ref|ZP_13289577.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12758]
gi|421114831|ref|ZP_15575245.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421123731|ref|ZP_15584003.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136644|ref|ZP_15596744.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|400327577|gb|EJO79824.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|409948513|gb|EKN98501.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|410013552|gb|EKO71629.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410019174|gb|EKO85999.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410438745|gb|EKP87829.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410764395|gb|EKR35110.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410774199|gb|EKR54216.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12758]
gi|410787814|gb|EKR81545.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
08452]
gi|455667851|gb|EMF33126.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 362
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 139/256 (54%), Gaps = 18/256 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 161 NGLTVVLPDD---VISFIDPLPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIEELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G +R RKS+ +E TF + D L ++L ++A ++ +
Sbjct: 217 FGKMGIYYYKISRGEDERMVQSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 277 EKKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAI 336
Query: 233 -SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 337 KAIRLLGISLSHPNSE 352
>gi|116512975|ref|YP_811882.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris SK11]
gi|123025143|sp|Q02WA3.1|DPO4_LACLS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116108629|gb|ABJ73769.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Lactococcus
lactis subsp. cremoris SK11]
Length = 364
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 22/258 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCA 119
P+G ++P++ + F++ LP+ K G+GK T L G T ++ + + L
Sbjct: 171 PHGLTLIMPDE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAE 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + F G+ ++ R RKS+ ERT+ LLY +L +I+
Sbjct: 227 KFGIYGWELFQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKIS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
+ +S +++ L+G + LKL+ + F T+ ++ + + S EDI + A + + +
Sbjct: 281 KQVSESLKRHQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDE 340
Query: 231 PVSLRLIGLRVTQFNEDK 248
+ +RL+G+ V+ F K
Sbjct: 341 SLGVRLLGVTVSGFGVQK 358
>gi|423098874|ref|ZP_17086582.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
gi|370794701|gb|EHN62464.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
Length = 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIKTGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>gi|16801148|ref|NP_471416.1| DNA polymerase IV [Listeria innocua Clip11262]
gi|22095622|sp|Q92A40.1|DPO4_LISIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16414583|emb|CAC97312.1| lin2082 [Listeria innocua Clip11262]
Length = 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYQLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|282882761|ref|ZP_06291368.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
gi|281297422|gb|EFA89911.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
Length = 344
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 9/248 (3%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE+YLD+T++ + + +E++ ++ ++ GL+ S G++ N+ LAK+ SD NKP
Sbjct: 99 VSIDESYLDLTDINPD-----YKFLKEMQDNILKKTGLSVSIGMSTNKFLAKLASDWNKP 153
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G ++ D V + L IRKI GIGK +E LR++ C+ + L +F
Sbjct: 154 RGIKIISKDE--VPDILMDLDIRKIHGIGKKSEDKLRNLGIDKVCDLYNLEEDFLINLFG 211
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 182
S D + + G+ RKS+ +E TF T+++ L + + +S D+ K
Sbjct: 212 KSGEDIYKRIR-GIDDREVQTKIKRKSLGTENTFFPTDNRIDLENYIKIFSGEVSQDLIK 270
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRV 241
L G TLT+KLK F++RT++ T + + EDI + +L + +RLIGL V
Sbjct: 271 RNLLGFTLTIKLKNDKFKIRTKSRTYEYGLYKKEDIYREGLILFREFYNDDKIRLIGLTV 330
Query: 242 TQFNEDKV 249
+ ++ K+
Sbjct: 331 SNLSDLKI 338
>gi|269966224|ref|ZP_06180313.1| DNA polymerase IV [Vibrio alginolyticus 40B]
gi|269829139|gb|EEZ83384.1| DNA polymerase IV [Vibrio alginolyticus 40B]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 134/262 (51%), Gaps = 32/262 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 93 SLDEAYLDVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPN 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V I SLP+ I G+GKV+ L G CE++ L F
Sbjct: 152 GQFVIPPEK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ + R RKS+ ERTFS V E+K LY +L +
Sbjct: 209 RQGASLW-QRSHGIDNREVVVERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEK 265
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKA 228
E S D + K+G +K+K A F++ T + Q + + +L+ +LK
Sbjct: 266 RLERASPDKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKR 315
Query: 229 ELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V ED+ R
Sbjct: 316 QNGREIRLLGLNVMLKPEDQAR 337
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|381196721|ref|ZP_09904062.1| DNA polymerase IV [Acinetobacter lwoffii WJ10621]
Length = 353
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE ++ S E+AE +R +++ GLT SAGVAPN+ LAKV SD NKPN
Sbjct: 100 SLDEAYLDVTENLQQLA-SATEVAERIRADIFQSTGLTASAGVAPNKFLAKVASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+ + V FI LP++KI G+GKV + L + T ++ ++L F
Sbjct: 159 GICVIKPSQ--VQQFIQHLPLKKIPGVGKVMQEKLH-ALKLETLGDLQHVDENILIHHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSAD 179
+L G+ R R+ IS E TF + E + KL IA++ +
Sbjct: 216 KYGKQLYL-YAQGIDERPVQAERERQQISKETTFDDDLILEQCLPFWPKL--IAQVWQS- 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS----LR 235
++K+ L R +T+KLK +F+ + + + + ++ +LLK E+ ++ R
Sbjct: 272 LEKKQLYARGVTVKLKLKNFQTLQHSKSFKTPLKHQTELQMTLDILLK-EMQITPDQQFR 330
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 331 LIGVGV 336
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 23/255 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 130 SIDEAYLDVTE--NKLGIKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKP 187
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP D F+ LPI K G+GK + L + G+ T ++L+ + L +
Sbjct: 188 KGLTLILPED---AQDFLKKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDL 243
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI SERT+ LLY ++++ A+
Sbjct: 244 FGRFGYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQ 297
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ +Q+ GRT+ LK++ + F T+ +TL + E I + A + + E +
Sbjct: 298 RVVDTLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKL 357
Query: 233 SLRLIGLRVTQFNED 247
+RL+G+ VT ++
Sbjct: 358 GVRLLGVTVTGLEDN 372
>gi|284802420|ref|YP_003414285.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284995562|ref|YP_003417330.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
gi|284057982|gb|ADB68923.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284061029|gb|ADB71968.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
Length = 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>gi|325979102|ref|YP_004288818.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325179030|emb|CBZ49074.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 365
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 138/258 (53%), Gaps = 24/258 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKLGIKSAIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP D F+ LPI K G+GK + L + G+ T ++L+ + L +
Sbjct: 172 KGLTLILPED---AQDFLEKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDL 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI SERT+ LLY ++++ A+
Sbjct: 228 FGRFGYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQ 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ +Q+ GRT+ LK++ + F T+ +TL + E I + A + + E +
Sbjct: 282 RVVDTLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKL 341
Query: 233 SLRLIGLRVTQFNEDKVR 250
+RL+G+ +T ED ++
Sbjct: 342 GVRLLGVTITGL-EDNIQ 358
>gi|315303932|ref|ZP_07874389.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
gi|313627694|gb|EFR96370.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
Length = 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 11/246 (4%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFQKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G V+ D F+ +P+ K G+GKVT L + GI T + L+K S +
Sbjct: 162 AGITVVSPDEAE--AFLEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRE 217
Query: 123 HSTADFFLSVGLGLGSTNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADM 180
+ L + S N R RKS+ E TF D+ +L + L A+ + +
Sbjct: 218 LHKQGYHLYRHVRGRSNNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERL 277
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIG 238
K G+T+ LKL+ + F T+ +TL +YI ++ I + A++LL S+RLIG
Sbjct: 278 TKLQKHGKTVVLKLRYSDFTTVTKRLTLNEYIHDAKQIYQAAALLLSETYTGKESIRLIG 337
Query: 239 LRVTQF 244
L VT
Sbjct: 338 LTVTNL 343
>gi|167619388|ref|ZP_02388019.1| DNA polymerase IV [Burkholderia thailandensis Bt4]
Length = 378
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 108 SLDEAYLDVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPD 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL
Sbjct: 167 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLH 219
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D A L + AEI +L
Sbjct: 220 HEFGAFGRRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALL 277
Query: 177 SADMQKEGLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPV 232
A +++ G R L +K++ A F+ T + ++ + D S+L K A
Sbjct: 278 DARIERAGAARSIRKLYVKVRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQ 332
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ V + +ED
Sbjct: 333 AVRLLGVGV-RIDED 346
>gi|332686123|ref|YP_004455897.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|379727827|ref|YP_005320012.1| DNA polymerase IV [Melissococcus plutonius DAT561]
gi|332370132|dbj|BAK21088.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|376318730|dbj|BAL62517.1| DNA polymerase IV [Melissococcus plutonius DAT561]
Length = 370
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 15/247 (6%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
AS+DEAYLD+T + + S I+IA ++ ++++E LTCSAG++ N+ LAK+ SD KP
Sbjct: 116 ASIDEAYLDVT-INKLHSKSAIKIARLIQQTIWQELQLTCSAGISYNKFLAKLASDYQKP 174
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP + F+ +L I K GIGK T + ++ GI T ++ + L
Sbjct: 175 KGLTVILPEE---AEDFLKNLAIEKFHGIGKKTVPKMHEL-GIYTGRDLYHVSEIVLIQH 230
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLS 177
F + V G+ + RKS+ E T+ TE++ + +L ++A +
Sbjct: 231 FGKMGYSLYRKVR-GIHDAPVDATKDRKSVGKEHTYRKPLATEEQVV--TQLRQLAMKVE 287
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
A +Q+ G+T+ LK++ + T+ VTLQ+YI ED+ ++ + EL ++R
Sbjct: 288 ASLQQAQKHGKTIVLKVRYEDYTTITKRVTLQEYIYMKEDLFYQVQMIWENELEWKKNIR 347
Query: 236 LIGLRVT 242
L+G+ +T
Sbjct: 348 LLGITLT 354
>gi|69246405|ref|ZP_00603927.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|406580418|ref|ZP_11055611.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|406582747|ref|ZP_11057845.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|406584910|ref|ZP_11059906.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410936970|ref|ZP_11368832.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430824014|ref|ZP_19442581.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430844890|ref|ZP_19462787.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430846835|ref|ZP_19464689.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430851098|ref|ZP_19468853.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430856102|ref|ZP_19473806.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|431237138|ref|ZP_19503281.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|431264073|ref|ZP_19505961.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|431382817|ref|ZP_19511410.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|431522829|ref|ZP_19516778.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|431536394|ref|ZP_19517354.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|431701816|ref|ZP_19524925.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|431744892|ref|ZP_19533757.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|431779259|ref|ZP_19567455.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|447913406|ref|YP_007394818.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
gi|68195277|gb|EAN09729.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|404453795|gb|EKA00827.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|404457737|gb|EKA04267.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|404463129|gb|EKA08825.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410734563|gb|EKQ76482.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430441398|gb|ELA51495.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430496321|gb|ELA72426.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430534502|gb|ELA74946.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430538389|gb|ELA78681.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430545391|gb|ELA85365.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|430572702|gb|ELB11552.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|430576509|gb|ELB15160.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|430581188|gb|ELB19635.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|430585011|gb|ELB23320.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|430594881|gb|ELB32833.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|430597101|gb|ELB34905.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|430604817|gb|ELB42247.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|430642524|gb|ELB78301.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|445189115|gb|AGE30757.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
Length = 372
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|239638048|ref|ZP_04679007.1| DNA polymerase IV [Staphylococcus warneri L37603]
gi|239596331|gb|EEQ78869.1| DNA polymerase IV [Staphylococcus warneri L37603]
Length = 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 15/254 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R + +IA +R + E+ LT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLPASKIANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + L I + G+GK +E ++ D I +++ K L +F
Sbjct: 162 GLTVI--DYNNVHDILMGLDIGEFPGVGKASEKVMHDN-QIFNGQDLYNKDEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ R RKS+ +ERTF+ V +D +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHNEVKSTRIRKSVGTERTFATDVNDDDEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRL 236
K G+T+T+K+KT FE ++ +L+ ++S DI A L E+P+ RL
Sbjct: 277 NKLQKSGKTVTVKIKTYQFETLSKQTSLRDPVNSETDIYNIAYSLYTDLKDPEVPI--RL 334
Query: 237 IGLRVTQFNEDKVR 250
IG+ V + R
Sbjct: 335 IGVTVGNLEQSAYR 348
>gi|187778600|ref|ZP_02995073.1| hypothetical protein CLOSPO_02195 [Clostridium sporogenes ATCC
15579]
gi|187772225|gb|EDU36027.1| ImpB/MucB/SamB family protein [Clostridium sporogenes ATCC 15579]
Length = 349
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 23/257 (8%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDI+ + +E+ I ++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDISHI-KEKPI---KVAKYIKNRVKDEIGLTLSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G ++ D + + LPI KI GIGK + L ++ G+ T +M + C
Sbjct: 156 DGIKIINKDMIP--RILMPLPINKIHGIGKKSVEKLHNI-GVFTVADMHKLSKDFC---- 208
Query: 123 HSTADFFLSVGL-------GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAE 174
++F G+ G+ +R RKSI E T +K + + L + +
Sbjct: 209 ---IEYFGKFGVEIYDRIRGIDYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSN 265
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS 233
+S ++ K G+T+T+K+KT++F+ TR+ T+ Y ++I A +L
Sbjct: 266 KISTNLYKRNSAGKTVTVKIKTSNFKTHTRSKTVNDYTRDKDEIYSIACDILDNINFKEP 325
Query: 234 LRLIGLRVTQFNEDKVR 250
+RLIGL V+ E+K++
Sbjct: 326 IRLIGLTVSNLGENKIK 342
>gi|430840671|ref|ZP_19458594.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|431741951|ref|ZP_19530850.1| DNA polymerase IV [Enterococcus faecium E2039]
gi|430494877|gb|ELA71095.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|430600799|gb|ELB38426.1| DNA polymerase IV [Enterococcus faecium E2039]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|349687672|ref|ZP_08898814.1| DNA polymerase IV [Gluconacetobacter oboediens 174Bp2]
Length = 361
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 12/255 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + S IA+++R + E GLT SAG++ N+ LAK+ SD KP+
Sbjct: 106 SLDEAYLDVTHPLQPYP-SATAIAQDIRDRIRAETGLTASAGISYNKFLAKLASDYRKPD 164
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
GQFV+ RM F+++LP+ + GIG T + GI T ++ Q+ L + H
Sbjct: 165 GQFVI-TPRMG-PDFVATLPVEQFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRH 219
Query: 124 --STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
ADF+ + G+ R R+SI +ERTF V D A + +++ +
Sbjct: 220 FGKAADFYYGIARGIDERPVEVNRPRRSIGAERTFEVDIHDWAAALDVIMDLSTRVWNRC 279
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIG 238
L G T+T+K+K F R T + + + D++ A LL P +RL+G
Sbjct: 280 TARSLTGITVTIKVKYNDFRQIVRGRTALEPVRDATDLVDRAQGLLAPCFPPPRGIRLLG 339
Query: 239 LRVTQFN-EDKVRAP 252
+ V+ D + AP
Sbjct: 340 VTVSGLRARDALAAP 354
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|417765229|ref|ZP_12413194.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417783875|ref|ZP_12431588.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. C10069]
gi|400352531|gb|EJP04712.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|409952914|gb|EKO07420.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. C10069]
gi|455791044|gb|EMF42876.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar Lora
str. TE 1992]
Length = 362
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 16/255 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDE YLD+T ++ + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKPN
Sbjct: 103 SLDEGYLDVT-FNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPN 161
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 162 GLTVVLPDD---VISFIDPLPVSSFYGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
++ + G +R RKS+ +E TF + D L ++L ++A ++ ++
Sbjct: 218 GKMGIYYYKISRGEDERMVQSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--------- 232
K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 278 KKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIK 337
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 338 AIRLLGISLSHPNSE 352
>gi|293572065|ref|ZP_06683076.1| DNA polymerase IV [Enterococcus faecium E980]
gi|291607850|gb|EFF37161.1| DNA polymerase IV [Enterococcus faecium E980]
Length = 372
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|257888438|ref|ZP_05668091.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257899185|ref|ZP_05678838.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|431049963|ref|ZP_19493323.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|431065032|ref|ZP_19493855.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|431594896|ref|ZP_19522002.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|431738337|ref|ZP_19527282.1| DNA polymerase IV [Enterococcus faecium E1972]
gi|257824492|gb|EEV51424.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257837097|gb|EEV62171.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|430560372|gb|ELA99669.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|430568652|gb|ELB07691.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|430590822|gb|ELB28868.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|430597775|gb|ELB35558.1| DNA polymerase IV [Enterococcus faecium E1972]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|319792107|ref|YP_004153747.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS]
gi|315594570|gb|ADU35636.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS]
Length = 414
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D T+V + G +A ++ S+ + GLTCS GVAPN+L+AK+ S+ NKPN
Sbjct: 141 GVDEVYIDFTDVPGGQRDGGRSLARLIQKSILDATGLTCSVGVAPNKLIAKMASEFNKPN 200
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122
G V+ + + I LP RK+ GIG + L+ FGI T ++ + L F
Sbjct: 201 GISVVYEGDLE--SHIWPLPCRKVNGIGPKADEKLKR-FGIETVGQLAARDRDWLIQNFG 257
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
+T + V G S+S E TF D+A L + E ++
Sbjct: 258 KATGAWMHEVSWGRDDRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEKVAE 317
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLI 237
D+Q++G G+T+ +KL+ F++ TR T+ ++ + + I + + LK L LRL+
Sbjct: 318 DLQRKGYVGKTIGIKLRYDDFKIATRDQTIDRFTADGKTIRQVGGLCLKRVPLERPLRLL 377
Query: 238 GLRV 241
G+RV
Sbjct: 378 GVRV 381
>gi|431099276|ref|ZP_19496442.1| DNA polymerase IV [Enterococcus faecium E1613]
gi|430570777|gb|ELB09716.1| DNA polymerase IV [Enterococcus faecium E1613]
Length = 373
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|83655177|gb|ABC39240.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 496
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 27/255 (10%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+
Sbjct: 226 SLDEAYLDVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPD 284
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL
Sbjct: 285 GLFVVRPHE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLH 337
Query: 123 HSTADF---FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEML 176
H F + G+ + RKS+S E T+ +D A L + AEI +L
Sbjct: 338 HEFGAFGRRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALL 395
Query: 177 SADMQKEGLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPV 232
A +++ G R L +K++ A F+ T + ++ + D S+L K A
Sbjct: 396 DARIERAGAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQ 450
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ V + +ED
Sbjct: 451 AVRLLGVGV-RIDED 464
>gi|424762996|ref|ZP_18190475.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|431763831|ref|ZP_19552379.1| DNA polymerase IV [Enterococcus faecium E3548]
gi|402423596|gb|EJV55806.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|430621655|gb|ELB58407.1| DNA polymerase IV [Enterococcus faecium E3548]
Length = 373
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|417760761|ref|ZP_12408777.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000624]
gi|417773233|ref|ZP_12421116.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000621]
gi|418675579|ref|ZP_13236869.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000623]
gi|418711471|ref|ZP_13272235.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418724457|ref|ZP_13283266.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12621]
gi|421085072|ref|ZP_15545927.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. HAI1594]
gi|421105262|ref|ZP_15565851.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|300669634|sp|Q72MY7.2|DPO4_LEPIC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|409943350|gb|EKN88951.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000624]
gi|409961778|gb|EKO25520.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. UI
12621]
gi|410364940|gb|EKP20339.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432465|gb|EKP76821.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. HAI1594]
gi|410576900|gb|EKQ39899.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000621]
gi|410577443|gb|EKQ45314.1| ImpB/MucB/SamB family protein [Leptospira interrogans str.
2002000623]
gi|410768392|gb|EKR43641.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|456824472|gb|EMF72909.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456972553|gb|EMG12921.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 362
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 139/256 (54%), Gaps = 18/256 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKP
Sbjct: 103 SLDEGYLDVT--FNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKP 160
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 161 NGLTVVLPDD---VISFIDPLPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQH 216
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G +R RKS+ +E TF + D L ++L ++A ++ +
Sbjct: 217 FGKMGIYYYKISRGEDERMVQSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 277 EKKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAI 336
Query: 233 -SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 337 KAIRLLGISLSHPNSE 352
>gi|294827665|ref|NP_710684.2| DNA polymerase IV [Leptospira interrogans serovar Lai str. 56601]
gi|386072896|ref|YP_005987213.1| DNA polymerase IV [Leptospira interrogans serovar Lai str. IPAV]
gi|418690513|ref|ZP_13251626.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. FPW2026]
gi|300669635|sp|Q8F8Q2.2|DPO4_LEPIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|293385508|gb|AAN47702.2| DNA polymerase IV [Leptospira interrogans serovar Lai str. 56601]
gi|353456685|gb|AER01230.1| DNA polymerase IV [Leptospira interrogans serovar Lai str. IPAV]
gi|400360318|gb|EJP16293.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. FPW2026]
Length = 362
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 16/255 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDE YLD+T ++ + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKPN
Sbjct: 103 SLDEGYLDVT-FNKKNIPYAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPN 161
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 162 GLTVVLPDD---VISFIDPLPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQHF 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQ 181
++ + G +R RKS+ +E TF + D L ++L ++A ++ ++
Sbjct: 218 GKMGIYYYKISRGEDERMVQSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLE 277
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--------- 232
K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 278 KKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIK 337
Query: 233 SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 338 AIRLLGISLSHPNSE 352
>gi|115314775|ref|YP_763498.1| DNA polymerase IV [Francisella tularensis subsp. holarctica OSU18]
gi|122325207|sp|Q0BM23.1|DPO4_FRATO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115129674|gb|ABI82861.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 349
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 137/244 (56%), Gaps = 17/244 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPN
Sbjct: 104 SLDEAYLDVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--F 121
G +V+ + V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F
Sbjct: 163 GLYVVTPKQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSA 178
+ + + G+ + R RKS+S E T+ ED L KL + + L++
Sbjct: 219 GKFGSSLY-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTS 275
Query: 179 DMQKEGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 237
M +E + + +K F +T + K + +++LK+ + L + +RLI
Sbjct: 276 RMTEEHYKSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLI 332
Query: 238 GLRV 241
G+ V
Sbjct: 333 GIGV 336
>gi|89256328|ref|YP_513690.1| DNA polymerase IV [Francisella tularensis subsp. holarctica LVS]
gi|156502401|ref|YP_001428466.1| DNA polymerase IV [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367662|ref|ZP_04983683.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|290952880|ref|ZP_06557501.1| DNA polymerase IV [Francisella tularensis subsp. holarctica URFT1]
gi|422938730|ref|YP_007011877.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|423050677|ref|YP_007009111.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
gi|122500763|sp|Q2A3L2.1|DPO4_FRATH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|226738232|sp|A7NC07.1|DPO4_FRATF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|89144159|emb|CAJ79420.1| DNA polymerase IV, devoid of proofreading,damage inducible protein
P [Francisella tularensis subsp. holarctica LVS]
gi|134253473|gb|EBA52567.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|156253004|gb|ABU61510.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293881|gb|AFT92787.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|421951399|gb|AFX70648.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
Length = 349
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 137/244 (56%), Gaps = 17/244 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPN
Sbjct: 104 SLDEAYLDVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--F 121
G +V+ + V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F
Sbjct: 163 GLYVVTPKQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKF 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSA 178
+ + + G+ + R RKS+S E T+ ED L KL + + L++
Sbjct: 219 GKFGSSLY-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTS 275
Query: 179 DMQKEGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 237
M +E + + +K F +T + K + +++LK+ + L + +RLI
Sbjct: 276 RMTEEHYKSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLI 332
Query: 238 GLRV 241
G+ V
Sbjct: 333 GIGV 336
>gi|350427247|ref|XP_003494699.1| PREDICTED: DNA polymerase IV-like [Bombus impatiens]
Length = 344
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
SLDEAYLD+T RG S IAE +R ++++E LT SAGVAP + LAK+ SDINK
Sbjct: 91 GVSLDEAYLDVTHCQLFRG-SATLIAENIRQTIFQELQLTASAGVAPLKFLAKIASDINK 149
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
PNGQ+V+ D+ V FI +LP++KI G+GKVTE L D+ G+ C +++ L +
Sbjct: 150 PNGQYVITPDK--VHLFIQTLPLKKIPGVGKVTEQKLADL-GLYNCADIINYD--LSKLL 204
Query: 122 SH--STADFFLSVGLGLGSTNTPQARFRKSISSERTF 156
H G+ ++ R RKS+ E+T
Sbjct: 205 DHFGKLGRILYERCNGIDNSEVNSDRLRKSVGVEKTL 241
>gi|431745421|ref|ZP_19534267.1| DNA polymerase IV [Enterococcus faecium E2134]
gi|430610468|gb|ELB47613.1| DNA polymerase IV [Enterococcus faecium E2134]
Length = 373
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|431183686|ref|ZP_19499994.1| DNA polymerase IV [Enterococcus faecium E1620]
gi|430573272|gb|ELB12096.1| DNA polymerase IV [Enterococcus faecium E1620]
Length = 376
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|322390272|ref|ZP_08063801.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
903]
gi|321143003|gb|EFX38452.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
903]
Length = 368
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 33/257 (12%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+TE + + S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP+
Sbjct: 114 SIDEAYLDVTE-NKIQSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPH 172
Query: 64 G-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G VLP D F+S + I K G+GK T L ++ G+ T G+ L A+
Sbjct: 173 GLTVVLPED---AEDFLSKMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAIPE 221
Query: 123 HSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEI 172
+ D F G L G N+P R RKSI ERT+ + LLY + L EI
Sbjct: 222 MTLIDRFGRFGYDLFRKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDILEEI 276
Query: 173 AEM---LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-- 227
A + ++ ++K G +G+TL LK++ F T+ +TL + +E I + A + +
Sbjct: 277 ANLSSKVAQSLEKHGKQGKTLVLKVRYGDFTTLTKRITLTEPTREAERINRSARQIFQEI 336
Query: 228 AELPVSLRLIGLRVTQF 244
+RL+G+ +T F
Sbjct: 337 ESTNTGIRLLGVTMTNF 353
>gi|365905357|ref|ZP_09443116.1| DNA polymerase IV [Lactobacillus versmoldensis KCTC 3814]
Length = 357
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 33/260 (12%)
Query: 2 AASLDEAYLDITE-VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ +LDEAYLD+T+ E ++ IA L+ + +E LTCS G++ N+ LAK+ SD
Sbjct: 96 SVALDEAYLDVTKNKLNENNVT--RIANYLQQRIVKETHLTCSVGISYNKFLAKMASDYR 153
Query: 61 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 120
KP G+ ++ F+ +PI K GIGK T+ L E + G+ L +
Sbjct: 154 KPFGRTLILG--AYAEDFLKPIPIEKFNGIGKTTQKKLH--------EMNIYTGADLQNL 203
Query: 121 FSHSTADFFLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKALLY-----RK 168
+ D F +G G+ + R RKSI ERT+ D+ +LY +
Sbjct: 204 DQDTFLDTFGKMGYVMYRRVHGIDDSPVEGNRIRKSIGRERTY----DRNILYSADIHHE 259
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
L ++A+M+S D++K G+T+ LKL+ + F+ T+ T Q Y+ S D+ + AS +
Sbjct: 260 LKKLAKMVSNDLKKRRQHGKTVVLKLRDSDFDTVTKRSTFQDYVQSEADLYRIASEIYD- 318
Query: 229 ELPV---SLRLIGLRVTQFN 245
+L V +RL+G+ VT +
Sbjct: 319 KLDVKGRKIRLLGITVTNLD 338
>gi|441495813|ref|ZP_20978052.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
gi|441440562|gb|ELR73820.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
Length = 347
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 11/219 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T ++ S IA E++ + E GLT SAG++ N+ LAK SD+NKP+
Sbjct: 92 SLDEAYLDVTH-NKKNMPSATLIAREIKKRIKETTGLTASAGISINKFLAKTASDVNKPD 150
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVF 121
G F++ P D A ++ L I K GIGKVT E + + GI +++ + V
Sbjct: 151 GLFLIAPEDAEA---YVERLAIEKFFGIGKVTAEKMFK--MGIRNGQDLKRYAEADLVVR 205
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 179
++ + + R RKS+ +E TF +TE + + ++L +I + L+
Sbjct: 206 FGKAGRYYYRIARAIDDREVNPNRIRKSLGAENTFEKDLTELEE-IRKELVDITKTLTMR 264
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 218
M++ +G+TLTLK+K F+ TR+ T+ K+I + + I
Sbjct: 265 MERSNTKGKTLTLKVKFHDFQQITRSKTITKWIENEKQI 303
>gi|430821683|ref|ZP_19440274.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430829563|ref|ZP_19447655.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430869936|ref|ZP_19483091.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|431766003|ref|ZP_19554501.1| DNA polymerase IV [Enterococcus faecium E4215]
gi|430438165|gb|ELA48638.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430480316|gb|ELA57492.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430559313|gb|ELA98672.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|430627336|gb|ELB63845.1| DNA polymerase IV [Enterococcus faecium E4215]
Length = 372
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMM- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|168187738|ref|ZP_02622373.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
gi|169294384|gb|EDS76517.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
Length = 347
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 132/250 (52%), Gaps = 11/250 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLDIT + ++ ++A ++ + E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDITNI----NMNPKDLAVNIKNMIKENMGLTISVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G ++ D + + L I K+ GIG+ + L ++ GI T +++ L F
Sbjct: 156 DGLKIITKDMIP--DILMPLSINKVHGIGRKSAKKLNNI-GIFTVKQLYTLPKKLFYEYF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
D + + G+ + R +KSI E T T+DK L + L A + +
Sbjct: 213 GKFGLDIYNRIR-GIDNREVITVREQKSIGKETTLKKDTKDKDELKKFLWIFAINIEEKL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGL 239
++G+T+TLK+KTA FE TR+ +L KYISS ++I K A +L + E +RLIG
Sbjct: 272 TTSNVKGKTITLKIKTAYFENHTRSKSLDKYISSRQEIYKVACAILDSIEFSEKIRLIGT 331
Query: 240 RVTQFNEDKV 249
++ + +V
Sbjct: 332 SISSLKDVEV 341
>gi|386054230|ref|YP_005971788.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
gi|346646881|gb|AEO39506.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
Length = 356
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 15/248 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTK--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE--MLQKGSLLCA 119
G V P + A F+ +P+ K G+GKVT L + GI T + M + L+
Sbjct: 162 AGITVVTPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKMWSEWDLIRE 217
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSA 178
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 218 LHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEE 275
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RL
Sbjct: 276 RLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRL 335
Query: 237 IGLRVTQF 244
IGL VT
Sbjct: 336 IGLTVTNL 343
>gi|430826869|ref|ZP_19445038.1| DNA polymerase IV [Enterococcus faecium E0164]
gi|430444618|gb|ELA54453.1| DNA polymerase IV [Enterococcus faecium E0164]
Length = 372
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 114 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDY 169
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 170 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMI- 224
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 225 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 278
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 279 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 338
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 339 GVEKGIRLLGITLTNLD 355
>gi|187922283|ref|YP_001893925.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
gi|187713477|gb|ACD14701.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
Length = 385
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+DE Y+D+T V E E+ + ++ +V + LTCS +APN+LLAK+ S+++KP+
Sbjct: 125 GIDEIYIDLTAVTGE----SRELGDRIKAAVRQATSLTCSIAIAPNKLLAKIGSELDKPD 180
Query: 64 GQFVLPNDRMAVM-TFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQK-GSLLCAV 120
G VL MA + + I L +KI GIG + TE + GI T E+ LL
Sbjct: 181 GLTVLT---MADLESRIWPLAAKKINGIGPRATERLAG--IGIATVGELAAADPGLLQEH 235
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEML 176
F + A++F V G+ A KS+S E TF V D+ L L + E +
Sbjct: 236 FGRTYAEWFARVARGIDDRPIVVASEPKSMSRETTFERDMHVNRDRVTLTPALTRLCERV 295
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLR 235
+ D+Q++G GRT+ LK+K A F + TR ++L + ++ + I + A LK L +R
Sbjct: 296 ADDLQRKGYGGRTVGLKIKFADFRIVTRDLSLPEAVTDAAAIRRAAGECLKRVPLDRRIR 355
Query: 236 LIGLRV 241
LIG+R+
Sbjct: 356 LIGVRI 361
>gi|228476340|ref|ZP_04061041.1| DNA polymerase IV [Staphylococcus hominis SK119]
gi|418618732|ref|ZP_13181587.1| ImpB/MucB/SamB family protein [Staphylococcus hominis VCU122]
gi|228269623|gb|EEK11129.1| DNA polymerase IV [Staphylococcus hominis SK119]
gi|374826611|gb|EHR90498.1| ImpB/MucB/SamB family protein [Staphylococcus hominis VCU122]
Length = 356
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 11/248 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
+LDEAYLDIT + + S +IA +R ++ + GLT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 ALDEAYLDITHLVKPHR-SASKIASNIRKDIFNKTGLTSSAGVSYNKYLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ V + +L I G+GK ++ I+ + I T +++ K L F
Sbjct: 162 GMMVIHYQN--VHDILMNLDIGDFPGVGKASKKIMHE-HDIYTGKDLYSKSEFELIRWFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ V G+ + +R RKS+ +ERTFS + +D+A+L +K+ E++ S +
Sbjct: 219 KKGRGLYQKV-RGIDDSEVKASRIRKSVGTERTFSTDINDDEAIL-QKIWELSGKTSERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
+ G T+T+K+KT FE ++ +L++ +S DI A L + V +RLIG
Sbjct: 277 TQLQKSGTTVTVKIKTHRFETYSKQRSLREAVSKDIDIYNIAYDLYHELKDPDVPIRLIG 336
Query: 239 LRVTQFNE 246
+ V +
Sbjct: 337 VTVGHLEQ 344
>gi|398353762|ref|YP_006399226.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|390129088|gb|AFL52469.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 374
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 132/250 (52%), Gaps = 17/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ +IAEE+R + GLT SAGV+ N+ LAK+ SD KP+
Sbjct: 120 SLDEAYLDVTENLKGMEIA-TDIAEEIRAKIKATTGLTASAGVSYNKFLAKMASDQRKPD 178
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G FV+ P + A F+ +LP++K G+G T ++ + GI T ++ + +
Sbjct: 179 GLFVITPRNGPA---FVEALPVKKFHGVGPATAERMKRL-GIETGLDLKTRSLVFLQEHF 234
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL-----YRKLAEIAEMLS 177
+ +F + G+ R RKS+ +E TF+ ED LL ++L + E +
Sbjct: 235 GKSGAYFYGIARGIDQREVKPDRVRKSVGAEDTFA--ED--LLEFEPASKELVPLVEKVW 290
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ + RT+T+K+K + F TR+ TL ++ +I + A LL P S+R
Sbjct: 291 RYCEANAISARTVTVKIKYSDFTQATRSRTLPVPVTGPAEIAEIARALLSMVYPFRRSIR 350
Query: 236 LIGLRVTQFN 245
L+G+ ++ +
Sbjct: 351 LLGVTLSSLD 360
>gi|417780225|ref|ZP_12427990.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
gi|410779619|gb|EKR64232.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
Length = 352
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKP
Sbjct: 93 SLDEGYLDVT--FNKKNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKP 150
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V+ FI LP+ G+GKVT ++++ I T +++ K + +
Sbjct: 151 NGLTVVLPDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKN--IDELI 204
Query: 122 SH--STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSA 178
H ++ + G R RKS+ +E TF + D+ L ++L E+A +
Sbjct: 205 QHFGKMGIYYYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVER 264
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV------ 232
+++ G+TLTLK+K F++RTR+ TL + I S++++ A+ L + +
Sbjct: 265 RLKERDFAGKTLTLKIKFQDFKLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQV 324
Query: 233 ---SLRLIGLRVTQFN 245
++RL+G+ ++ N
Sbjct: 325 SIKAIRLLGINLSHPN 340
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 150/271 (55%), Gaps = 21/271 (7%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + GI S +EIA++++ ++ EE LT SAGV+ N+ +AK+ SDI+KP
Sbjct: 110 SLDEAYLDVTE--DKMGIGSAMEIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKP 167
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCA 119
NG F+ P+ + F+ LP+ K G+GKVT ++ +F + +++ ++ L
Sbjct: 168 NGLTFIGPS---KIERFMDQLPVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEE--LVN 222
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEML 176
F T F+ + G+ R KS+ +E TF+ T D+ + ++L I +
Sbjct: 223 HFG-KTGHFYYRIVRGIDDREVQTHRETKSLGAEDTFTYDLTTPDE--MNKELDRIGVTV 279
Query: 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSL 234
+ ++ + L+GRT+TLK+K + F TR + + + I A LL K +L ++
Sbjct: 280 ANRLETKKLKGRTVTLKVKFSDFTQITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAV 339
Query: 235 RLIGLRVTQFNEDKV--RAPSDPTQKTLTNF 263
RL+G+ ++ F+E +V R DP Q L F
Sbjct: 340 RLLGISLSNFHEPEVKYRKYKDPEQLELFPF 370
>gi|125625067|ref|YP_001033550.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|389855450|ref|YP_006357694.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
gi|189027668|sp|A2RNH9.1|DPO4_LACLM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|124493875|emb|CAL98869.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|300071872|gb|ADJ61272.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
Length = 364
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 22/258 (8%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 112 AASIDEAYLDVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 170
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCA 119
P+G ++P++ + F++ LP+ K G+GK T L G T ++ + + L
Sbjct: 171 PHGLTLIMPDE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAE 226
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIA 173
F + F G+ ++ R RKS+ ERT+ LLY +L +I+
Sbjct: 227 RFGIYGWELFQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKIS 280
Query: 174 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AEL 230
+ +S +++ L+G + LKL+ + F T+ ++ + + S EDI + A + + +
Sbjct: 281 KQVSESLKRHQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDE 340
Query: 231 PVSLRLIGLRVTQFNEDK 248
+ +RL+G+ V+ F K
Sbjct: 341 SLGVRLLGVTVSGFGVQK 358
>gi|45658878|ref|YP_002964.1| DNA polymerase IV [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|45602123|gb|AAS71601.1| DNA polymerase IV [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
Length = 364
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 139/256 (54%), Gaps = 18/256 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDE YLD+T ++ I + IA+E+RT +++ LT SAGV ++ ++K+ S+ NKP
Sbjct: 105 SLDEGYLDVT--FNKKNIPFAVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKP 162
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
NG VLP+D V++FI LP+ G+GKVT ++++ GI T +++ K
Sbjct: 163 NGLTVVLPDD---VISFIDPLPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQH 218
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADM 180
++ + G +R RKS+ +E TF + D L ++L ++A ++ +
Sbjct: 219 FGKMGIYYYKISRGEDERMVQSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRL 278
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-------- 232
+K+ G+TLTLK+K F ++TR+ TL + I ++++ A L + +
Sbjct: 279 EKKDFAGKTLTLKIKFYDFSLKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAI 338
Query: 233 -SLRLIGLRVTQFNED 247
++RL+G+ ++ N +
Sbjct: 339 KAIRLLGISLSHPNSE 354
>gi|407420129|gb|EKF38479.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 513
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 23/259 (8%)
Query: 2 AASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 60
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 207 SVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYE 266
Query: 61 KPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KPNGQ L R VM F+ +LP+R + GIG V E LR + GI TC +L+K LL
Sbjct: 267 KPNGQHELRLRTRQDVMEFMKNLPVRTVPGIGPVQEAALR-ILGIRTCGCLLRKKVLLFF 325
Query: 120 VFSHSTADFFLSVGLGLGSTN---TPQARFRKSISSERTF-----SVTEDKALLYRKLAE 171
+F T F+LS GLG+ N T R +K++ E TF S E K ++ + L
Sbjct: 326 LFPEKTFRFYLSAGLGVVRNNADRTRSDRTQKTMGHEITFKRRLKSEAELKQIVLKVLVA 385
Query: 172 IAEML---SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
+ L A Q+ +TL +K +FE +TL + + + K LL+
Sbjct: 386 VHTTLLLRRAAAQR-------VTLHMKRRTFENHQFTLTLGEATNDFAALRKATWKLLQP 438
Query: 229 ELPV--SLRLIGLRVTQFN 245
L + RL+G+R+ +
Sbjct: 439 HLASFDNFRLVGVRLGKLQ 457
>gi|385831557|ref|YP_005869370.1| DNA polymerase IV [Lactococcus lactis subsp. lactis CV56]
gi|418037230|ref|ZP_12675613.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|326407565|gb|ADZ64636.1| DNA polymerase IV [Lactococcus lactis subsp. lactis CV56]
gi|354694717|gb|EHE94360.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 363
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 24/259 (9%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 111 AASIDEAYLDVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 169
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LC 118
P+G ++P + + F++ LP+ K G+GK T L + N + LQK L
Sbjct: 170 PHGLTLIMPEE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLA 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEI 172
F + + G+ ++ R RKS+ ERT+ LLY +L++I
Sbjct: 225 ERFGVYGWELYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKI 278
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAE 229
+ +S ++ L+G + LKL+ + F T+ +L + + S E+I + A + L+ +
Sbjct: 279 SGKVSDSLKSHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYD 338
Query: 230 LPVSLRLIGLRVTQFNEDK 248
+ +RL+G+ VT+F K
Sbjct: 339 ESLGVRLLGVTVTEFGAQK 357
>gi|255026659|ref|ZP_05298645.1| DNA polymerase IV [Listeria monocytogenes FSL J2-003]
Length = 356
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 17/247 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGITVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
+ K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ERLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVT 242
LIGL VT
Sbjct: 335 LIGLTVT 341
>gi|30249204|ref|NP_841274.1| UMUC family protein [Nitrosomonas europaea ATCC 19718]
gi|30180523|emb|CAD85130.1| UMUC family (DNA-repair) [Nitrosomonas europaea ATCC 19718]
Length = 385
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 15/249 (6%)
Query: 5 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 64
+DE Y+D++E E +A ++ +V + GL+CS G+APN+LLAK+ SD+ KP+G
Sbjct: 129 IDEIYIDLSEHPDETA----SLASSIKQAVRDATGLSCSIGIAPNKLLAKISSDLEKPDG 184
Query: 65 QFVLPNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
+L + + I L +RKI GIG K E ++R GI E+ + + SLL A F
Sbjct: 185 LTILTH--TDIPNRIWPLSVRKINGIGPKAEEKLVR--LGIQKIGELAKAELSLLQAHFG 240
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 178
S A + G S + KSIS E TF V ED+ +L E+ ++
Sbjct: 241 RSNAIWLHDSAHGRDSRPVVISSESKSISREATFERDLHVQEDREILSDIFTELCTRVAE 300
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLI 237
D+Q++G GRT+ +KL+ +F+ TR +T++ + + I K A L + LRL+
Sbjct: 301 DLQRKGYVGRTIGIKLRYENFQTITRDLTVRNPTADASTIRKAARDCLRRVPFEQKLRLL 360
Query: 238 GLRVTQFNE 246
G+R++ ++
Sbjct: 361 GVRISGLSK 369
>gi|256832295|ref|YP_003161022.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
gi|256685826|gb|ACV08719.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
Length = 413
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 136/271 (50%), Gaps = 16/271 (5%)
Query: 4 SLDEAYLDITEVCRERGISGI--EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
S+DEAYLD++ + RG G A+ELR V G+TCS GVA N+ LAK+CS K
Sbjct: 118 SIDEAYLDVSGI---RGPQGTLSARAQELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAK 174
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAV 120
P+G VLP R F++ LPI + GIG +E L+ G++T ++ + S + A+
Sbjct: 175 PDGLLVLP--RGQEQEFLNLLPIGALMGIGDKSERRLKQ-HGLHTIRDVAALEPSYVVAL 231
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSAD 179
+ + + + G+ R KS+ +E TF+ E + +L + +A+ +++
Sbjct: 232 LGATLGNRLIHLARGIDDRPVTPTRVEKSVGAEHTFAQDEGSREVLRATVRSLADTVTSR 291
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
++ GL RT+++K++ +F TR VTL S + A L+ +L RL+
Sbjct: 292 LRSRGLLARTISVKIRDVNFHTITRHVTLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLL 351
Query: 238 GLRVTQFNEDKVRAPSDPTQKTLTNFMTSGH 268
G+R Q ++ P TL +T H
Sbjct: 352 GVRAEQLVPEE----GQPLTLTLEESLTDHH 378
>gi|425056854|ref|ZP_18460293.1| putative DNA polymerase IV [Enterococcus faecium 504]
gi|403041417|gb|EJY52432.1| putative DNA polymerase IV [Enterococcus faecium 504]
Length = 373
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 29/257 (11%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQANIWESDQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQ 112
KP G V P D + F+ +LPI K G+GK T + ++ GI T C EM+
Sbjct: 171 QKPRGITVVAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM- 225
Query: 113 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLA 170
L F + V G+ + R RKS+ E T+ + ++A+L +L
Sbjct: 226 ----LIRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLR 279
Query: 171 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 230
++AE + +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L
Sbjct: 280 QLAEKVEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEIL 339
Query: 231 PV--SLRLIGLRVTQFN 245
V +RL+G+ +T +
Sbjct: 340 GVEKGIRLLGITLTNLD 356
>gi|254447227|ref|ZP_05060694.1| DNA-directed DNA polymerase protein [gamma proteobacterium
HTCC5015]
gi|198263366|gb|EDY87644.1| DNA-directed DNA polymerase protein [gamma proteobacterium
HTCC5015]
Length = 357
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 7/260 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD++ C G S IAE LR ++ LT SAGV+ N+ LAK+ SD NKP+
Sbjct: 101 SLDEAYLDVS-ACDVLGGSATRIAEALRADIFRATQLTASAGVSYNKFLAKMASDQNKPD 159
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+ R F+ LPI G+G TE ++ +GI T ++ +K A
Sbjct: 160 GLCVIHPQRGE--AFVGELPIGDFHGVGPATEKKMQQ-WGIRTGADLRKKSREWLAAHFG 216
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQK 182
+A ++ + G+ R RKSI SE TF+ ++ A + L + E + ++K
Sbjct: 217 KSAGYYYDIARGVDERPVRTHRIRKSIGSETTFAQDLNREAAMLAVLEQRLEKVLLQLEK 276
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLR 240
+ RTLT+K+K A F TR+ +L + + LL++ S +RL+G+
Sbjct: 277 KRWNARTLTVKVKYADFTQVTRSKSLDEPSHGVSAFRRQLPELLRSTEARSKPVRLLGVT 336
Query: 241 VTQFNEDKVRAPSDPTQKTL 260
++ + + +P+Q L
Sbjct: 337 LSNLSPQADSSEEEPSQYPL 356
>gi|15674011|ref|NP_268186.1| DNA polymerase IV [Lactococcus lactis subsp. lactis Il1403]
gi|22095634|sp|Q9CE21.1|DPO4_LACLA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12725077|gb|AAK06127.1|AE006432_9 DNA-damage-inducible protein P [Lactococcus lactis subsp. lactis
Il1403]
Length = 363
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 24/259 (9%)
Query: 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
AAS+DEAYLD+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD K
Sbjct: 111 AASIDEAYLDVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEK 169
Query: 62 PNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LC 118
P+G ++P + + F++ LP+ K G+GK T L + N + LQK L
Sbjct: 170 PHGLTLIMPEE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLA 224
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEI 172
F + + G+ ++ R RKS+ ERT+ LLY +L++I
Sbjct: 225 ERFGVYGWELYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKI 278
Query: 173 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAE 229
+ +S ++ L+G + LKL+ + F T+ +L + + S E+I + A + L+ +
Sbjct: 279 SGKVSDSLKSHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYD 338
Query: 230 LPVSLRLIGLRVTQFNEDK 248
+ +RL+G+ VT+F K
Sbjct: 339 ESLGVRLLGVTVTEFGAQK 357
>gi|257867910|ref|ZP_05647563.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257874239|ref|ZP_05653892.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
gi|257801993|gb|EEV30896.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257808403|gb|EEV37225.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
Length = 374
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 135/249 (54%), Gaps = 13/249 (5%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T V + S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD +KP
Sbjct: 115 VSIDEAYLDVT-VNKINCPSAIKIARLIQRDIWQETHLTCSAGVSYNKFLAKLSSDYHKP 173
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G V+P++ +A F+ LPI K GIGK T + ++ GI T ++ + L
Sbjct: 174 RGLTVVMPDEAVA---FLQQLPIDKFHGIGKKTVPRMHEL-GIFTGADLYGWSEMALIRE 229
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 178
F + V G+ + R RKS+ E T+ +T ++ +L +L IAE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVSVTRERKSVGKEHTYGNPLTSEEQVL-SQLRAIAEEVER 287
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+++ G+T+ LK++ + + T+ VTL Y+ E + AS++ + L + +RL
Sbjct: 288 SLKRTQKHGKTVVLKVRYSDYSTITKRVTLPTYVHKKEQLFSEASLIWEEILGLEKGIRL 347
Query: 237 IGLRVTQFN 245
+G+ VT +
Sbjct: 348 LGITVTNLD 356
>gi|424047473|ref|ZP_17785032.1| DNA polymerase IV [Vibrio cholerae HENC-03]
gi|408883966|gb|EKM22729.1| DNA polymerase IV [Vibrio cholerae HENC-03]
Length = 342
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 130/268 (48%), Gaps = 44/268 (16%)
Query: 4 SLDEAYLDITE--VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
SLDEAYLD+T+ VCR S IAE +R + E G+T SAG+AP + LAKV SD+NK
Sbjct: 93 SLDEAYLDVTDSTVCRG---SATLIAESIRNDIRNELGITASAGIAPIKFLAKVASDMNK 149
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
PNGQFV+P D+ V + LP+ KI G+GKV+ L G CE++ L
Sbjct: 150 PNGQFVIPPDK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQ 206
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKL 169
F A + G+ R RKS+ ERTFS V EDK LY +L
Sbjct: 207 FGRQGASLW-KRSHGIDDREVVVERERKSVGVERTFSENISTYDECWKVIEDK--LYPEL 263
Query: 170 AEIAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-----RAVTLQKYISSSEDILKHA 222
E S D + K+G +KLK A F++ T + L+ + DILK
Sbjct: 264 ERRLEKASPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRDILKRQ 316
Query: 223 SVLLKAELPVSLRLIGLRVTQFNEDKVR 250
+ +RL+GL V E++ R
Sbjct: 317 N-------GREIRLLGLSVMLKPEEQAR 337
>gi|383120759|ref|ZP_09941482.1| DNA polymerase IV [Bacteroides sp. 1_1_6]
gi|382984922|gb|EES68284.2| DNA polymerase IV [Bacteroides sp. 1_1_6]
Length = 353
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 139/253 (54%), Gaps = 19/253 (7%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE ++GIS ++IA+E++ + E+ L SAGV+ N+ LAK+ SD KP
Sbjct: 92 SLDEAFLDVTE--NKKGISLAVDIAKEIKLRIREQLNLVASAGVSYNKFLAKIASDYRKP 149
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G + D+ + FI+ LPI G+G VT + + GI+ + L+K SL L A
Sbjct: 150 DGLCTIHPDQ--ALDFIAGLPIESFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAY 205
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 178
F A ++ G+ R RKSI ERT ++ +++ +L +A L
Sbjct: 206 FGKVGALYY-ECSRGIDERPVEAVRIRKSIGCERTLERDISVHSSVII-ELYHVAVELIE 263
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSL 234
+Q++ +G TLTLK+K F TR++T + + + + IL A LLK+ + P+
Sbjct: 264 RLQRKEFKGNTLTLKIKFHDFSQITRSITQTQELYTLDRILPLAKELLKSVEYEQHPI-- 321
Query: 235 RLIGLRVTQFNED 247
RLIGL V+ E+
Sbjct: 322 RLIGLSVSNPKEE 334
>gi|429219364|ref|YP_007181008.1| nucleotidyltransferase/DNA polymerase [Deinococcus peraridilitoris
DSM 19664]
gi|429130227|gb|AFZ67242.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Deinococcus peraridilitoris DSM 19664]
Length = 371
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 137/252 (54%), Gaps = 16/252 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEA-GLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T R+ G S IA+ ++ V++ GLT +AGV+ ++ +AK+ S +NKP
Sbjct: 114 SLDEAYLDVTH-PRQGGPSATRIAQHIKREVHKRTDGLTVTAGVSSSKFVAKLASSMNKP 172
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAV 120
+G V+ ++ V ++ LP+ GIG T + G+ T + L++ SL L A
Sbjct: 173 DGLTVIVPEQ--VDELVAKLPVSDFYGIGPKTAERM-ATLGVRTGAD-LRRVSLQDLLAH 228
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSAD 179
F S ++ + G+ RKS+ +E TF E + L+ LA IA + A
Sbjct: 229 FGKSGEHYY-QIARGIDERPVDPRDDRKSVGAEETFDQDEGNLEKLHLALAPIAGRVQAR 287
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLR 235
+ + L GR +TLK+K SFE+ TR VTL + + ++L+ AS LL EL PV R
Sbjct: 288 LARHALAGRVVTLKVKFHSFELLTRRVTLPVPVKDAREVLRVASTLLTEELLAGRPV--R 345
Query: 236 LIGLRVTQFNED 247
L+G+ V+ ++
Sbjct: 346 LLGISVSALEDE 357
>gi|58580386|ref|YP_199402.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188578682|ref|YP_001915611.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58424980|gb|AAW74017.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188523134|gb|ACD61079.1| ImpB/MucB/SamB family [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 369
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 135/249 (54%), Gaps = 15/249 (6%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 110 SLDEAYLDVTQA--KTGMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKP 167
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R + F+ L + +I G+GKV + L GI T ++ L+ L A F
Sbjct: 168 DGQFVIAPSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHF 224
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 225 G-SFGQSLYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLA 281
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRL 236
++ GRT+ LKLKT++F + TR+ T ++ S E + + A L + ELP RL
Sbjct: 282 TRRTERIGRTVVLKLKTSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRL 341
Query: 237 IGLRVTQFN 245
+G+ ++ F+
Sbjct: 342 VGVGLSGFS 350
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 23/255 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S ++IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 130 SIDEAYLDVTE--NKLGIKSALKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKP 187
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP D F+ LPI K G+GK + L + G+ T ++L+ + L +
Sbjct: 188 KGLTLILPED---AQDFLEKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDL 243
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI SERT+ LLY ++++ A+
Sbjct: 244 FGRFGYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQ 297
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ +Q+ GRT+ LK++ + F T+ +TL + E I + A + + E +
Sbjct: 298 RVVDTLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKL 357
Query: 233 SLRLIGLRVTQFNED 247
+RL+G+ VT ++
Sbjct: 358 GVRLLGVTVTGLEDN 372
>gi|254876929|ref|ZP_05249639.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842950|gb|EET21364.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 350
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 135/247 (54%), Gaps = 23/247 (9%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+V + S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPN
Sbjct: 104 SLDEAYLDVTDVAAYKN-SATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPN 162
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--- 120
G +V+ ++ V F+ +LP++K+ G+GKV++ L+ + + TC + LQ+ SL V
Sbjct: 163 GLYVITPEQ--VNNFVKNLPVKKLFGVGKVSQEKLKSM-NVETCLD-LQQLSLATLVDKF 218
Query: 121 --FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEM 175
F S ++ G+ + R RKS+S E T+ ED L KL + +
Sbjct: 219 GKFGSSLYNY----ARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPNLYDK 272
Query: 176 LSADMQKEGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL 234
L++ M +E + + +K F +T + K + + +LK+ + L + +
Sbjct: 273 LTSRMTEEHYKSIIGIVVKFTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHI 329
Query: 235 RLIGLRV 241
RLIG+ V
Sbjct: 330 RLIGIGV 336
>gi|374338723|ref|YP_005095440.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
gi|372284840|emb|CCF03144.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
Length = 365
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 23/255 (9%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTE--NKLGIKSAIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
G +LP D F+ LPI K G+GK + L + G+ T ++L+ + L +
Sbjct: 172 KGLTLILPED---AQDFLEKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEMPEMTLIDL 227
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAE 174
F D + G+ ++ R RKSI SERT+ LLY ++++ A+
Sbjct: 228 FGRFGYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQ 281
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPV 232
+ +Q+ GRT+ LK++ + F T+ +TL + + I + A + + E +
Sbjct: 282 RVVDTLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFKVIDQVAKTIYDSLDESKL 341
Query: 233 SLRLIGLRVTQFNED 247
+RL+G+ VT ++
Sbjct: 342 GVRLLGVTVTGLEDN 356
>gi|350532188|ref|ZP_08911129.1| DNA polymerase IV [Vibrio rotiferianus DAT722]
Length = 342
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 129/266 (48%), Gaps = 40/266 (15%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R +Y E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 93 SLDEAYLDVTDSKMCRG-SATLIAESIRNDIYSELGLTASAGIAPIKFLAKVASDMNKPN 151
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P ++ V + LP+ KI G+GKV+ L G CE++ L F
Sbjct: 152 GQFVIPPEK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFG 208
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ R RKS+ ERTFS V EDK L+ +L
Sbjct: 209 RQGASLW-KRSHGIDDREVVVERERKSVGVERTFSENIATYDECWKVIEDK--LFPELER 265
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-----RAVTLQKYISSSEDILKHASV 224
E S D + K+G +KLK A F++ T + L+ + DILK +
Sbjct: 266 RLEKASPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRDILKRQN- 317
Query: 225 LLKAELPVSLRLIGLRVTQFNEDKVR 250
+RL+GL V E + R
Sbjct: 318 ------GREIRLLGLSVMLKPEQQAR 337
>gi|269215514|ref|ZP_06159368.1| DNA-directed DNA polymerase [Slackia exigua ATCC 700122]
gi|269131001|gb|EEZ62076.1| DNA-directed DNA polymerase [Slackia exigua ATCC 700122]
Length = 339
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 19/263 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEA+LD+T R + IA ++ V + G+TCS GV ++ +AK+ SD +KP+
Sbjct: 15 SIDEAFLDVTP-TRVNTEHPVAIARRIQERV-ADLGVTCSIGVGSSKTIAKIASDFDKPS 72
Query: 64 GQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
G + P + F+S LPIR + G+G+ E L+ GI+T ++ L
Sbjct: 73 GMTIIYPGQEI---EFLSPLPIRTMSGVGERAEEALK-AHGIDTLGDLAHAPDRLLESIY 128
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSAD 179
A GL +++ + KS+SSE TF+V + D ++ A +A +
Sbjct: 129 GKNASMMRDRCFGLDASSVSSSNEVKSVSSETTFAVDLISYDD--IHNACATMAAKVGRR 186
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLI 237
++ + L+GRT++LKL+ A +R V LQ + +I+ HA+ L+K P +RL+
Sbjct: 187 LRAKELKGRTVSLKLRFADRSIRNAQVKLQVPTDNEHEIMVHAASLIKRVWSAPSRVRLV 246
Query: 238 GLRVTQFNEDKVRAPSDPTQKTL 260
G+ V+ F ED P Q+ L
Sbjct: 247 GIGVSDFREDAA-----PVQEAL 264
>gi|388602497|ref|ZP_10160893.1| DNA polymerase IV [Vibrio campbellii DS40M4]
gi|444424982|ref|ZP_21220431.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241767|gb|ELU53287.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 357
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 129/266 (48%), Gaps = 40/266 (15%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPN
Sbjct: 108 SLDEAYLDVTDSTACRG-SATLIAESIRRDIHTELGLTASAGIAPIKFLAKVASDMNKPN 166
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
GQFV+P D+ V + LP+ KI G+GKV+ L G CE++ L F
Sbjct: 167 GQFVIPPDK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFG 223
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAE 171
A + G+ R RKS+ ERTFS V EDK L+ +L
Sbjct: 224 RQGASLW-KRSHGIDDREVVVERERKSVGVERTFSENIATYDECWQVIEDK--LFPELER 280
Query: 172 IAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-----RAVTLQKYISSSEDILKHASV 224
E S D + K+G +KLK A F++ T + L+ + DILK +
Sbjct: 281 RLEKASPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRDILKRQN- 332
Query: 225 LLKAELPVSLRLIGLRVTQFNEDKVR 250
+RL+GL V E + R
Sbjct: 333 ------GREIRLLGLSVMLKPEQQAR 352
>gi|431751229|ref|ZP_19539921.1| DNA polymerase IV [Enterococcus faecium E2620]
gi|430615883|gb|ELB52821.1| DNA polymerase IV [Enterococcus faecium E2620]
Length = 373
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 19/252 (7%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-L 117
KP G V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L
Sbjct: 171 QKPRGITVVAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTL 226
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE
Sbjct: 227 IRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEK 284
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V
Sbjct: 285 VEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKG 344
Query: 234 LRLIGLRVTQFN 245
+RL+G+ +T +
Sbjct: 345 IRLLGITLTNLD 356
>gi|269960538|ref|ZP_06174910.1| DNA polymerase IV [Vibrio harveyi 1DA3]
gi|269834615|gb|EEZ88702.1| DNA polymerase IV [Vibrio harveyi 1DA3]
Length = 354
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 132/264 (50%), Gaps = 36/264 (13%)
Query: 4 SLDEAYLDITE--VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 61
SLDEAYLD+T+ VCR S IAE +R + E G+T SAG+AP + LAKV SD+NK
Sbjct: 105 SLDEAYLDVTDSTVCRG---SATLIAESIRNDIRNELGITASAGIAPIKFLAKVASDMNK 161
Query: 62 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAV 120
PNGQFV+P D+ V + LP+ KI G+GKV+ L G CE++ L
Sbjct: 162 PNGQFVIPPDK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQ 218
Query: 121 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKL 169
F A + G+ R RKS+ ERTFS V EDK LY +L
Sbjct: 219 FGRQGASLW-KRSHGIDDREVVVERERKSVGVERTFSENISTYDECWKVIEDK--LYPEL 275
Query: 170 AEIAEMLSAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLL 226
E S D + K+G +KLK A F++ T + Q + + +L+ +L
Sbjct: 276 ERRLEKASPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKVLLRD---IL 325
Query: 227 KAELPVSLRLIGLRVTQFNEDKVR 250
K + +RL+GL V E++ R
Sbjct: 326 KRQNGREIRLLGLSVMLKPEEQAR 349
>gi|227550409|ref|ZP_03980458.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|293379604|ref|ZP_06625741.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|431758358|ref|ZP_19546985.1| DNA polymerase IV [Enterococcus faecium E3083]
gi|227180468|gb|EEI61440.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|292641753|gb|EFF59926.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|430617416|gb|ELB54289.1| DNA polymerase IV [Enterococcus faecium E3083]
Length = 373
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 19/252 (7%)
Query: 3 ASLDEAYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
S+DEAYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD
Sbjct: 115 VSIDEAYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDY 170
Query: 60 NKPNG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-L 117
KP G V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L
Sbjct: 171 QKPRGITVVAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTL 226
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE
Sbjct: 227 IRNFGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEK 284
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 233
+ +++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V
Sbjct: 285 VEEALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKG 344
Query: 234 LRLIGLRVTQFN 245
+RL+G+ +T +
Sbjct: 345 IRLLGITLTNLD 356
>gi|224476951|ref|YP_002634557.1| DNA polymerase IV [Staphylococcus carnosus subsp. carnosus TM300]
gi|254781924|sp|B9DMT3.1|DPO4_STACT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|222421558|emb|CAL28372.1| similar to DNA polymerase IV [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 356
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R +S IA+ +R ++E+ GLT SAG++ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLSASAIAQFIRRDIWEKTGLTSSAGISYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ + V + +L I G+GK T+ ++ GI +++ K L +F
Sbjct: 162 GITVIHYNN--VNEILMNLDIGDFPGVGKATKEVMH-TNGIYNGQDLYNKDERELIRIFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ G+ R RKS+ +ERTF+ + +D+ +L K+ E++E + +
Sbjct: 219 KRGHGLYQK-ARGIDHKPVKNFRIRKSVGTERTFATDINDDEEILL-KVRELSEKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
+ G+T+T+K+KT FE +R +L+ I S DI A L + V +RLIG
Sbjct: 277 SRIQKSGKTVTVKIKTYQFETLSRQRSLRDPIRSDIDIYNTAYSLYNELKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>gi|299144467|ref|ZP_07037547.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518952|gb|EFI42691.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 347
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DE Y+DI+E + ++I ++ V E GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDECYMDISENKNQ----PVDIVFSIKKKVKNETGLTVSVGLSYNKFLAKMASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G ++ + + +S + I KI G+G ++ LR++ GIN EE+L+ L +F
Sbjct: 156 DGMMII--SKSEIPQLLSKIDIGKIHGLGNKSQEKLRNL-GINKIEELLELDREFLFELF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 181
+ + + G+ + R RKS+ ERTFS T + L L + L+ D++
Sbjct: 213 GKMGYEVYDRIR-GIDNRAVTPNRERKSLGIERTFSDTNNVKELISYLDRYSFELAEDLK 271
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGL 239
L +T+TLK+KT +F+V T + T + IS EDI K+ + + LRLIG+
Sbjct: 272 NRNLGFKTITLKIKTDNFKVSTYSKTYSRAISEYEDIFKNVKDIFEYNYKNQKLRLIGI 330
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,177,499,750
Number of Sequences: 23463169
Number of extensions: 298318826
Number of successful extensions: 804961
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4732
Number of HSP's successfully gapped in prelim test: 1809
Number of HSP's that attempted gapping in prelim test: 789751
Number of HSP's gapped (non-prelim): 7534
length of query: 481
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 335
effective length of database: 8,933,572,693
effective search space: 2992746852155
effective search space used: 2992746852155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)