BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011631
(481 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
Length = 870
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 78
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 138
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 139 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 198
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 199 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 252
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 253 SDPTQKTLTNFMTSGHAS 270
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
Length = 852
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 20 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 79
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 139
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 140 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 199
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 200 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 253
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 254 DPTQKTLTNFMTSGHASKKIVGD 276
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>sp|P34409|POLK_CAEEL DNA polymerase kappa OS=Caenorhabditis elegans GN=polk-1 PE=3 SV=3
Length = 596
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 160/269 (59%), Gaps = 14/269 (5%)
Query: 18 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 77
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M
Sbjct: 247 EFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIME 306
Query: 78 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 137
F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LGL
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLP 365
Query: 138 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKT 196
+ RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK
Sbjct: 366 GRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKL 425
Query: 197 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSD 254
+SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 426 SSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR--- 482
Query: 255 PTQKTLTNFMTSGHASKKIVGDQNSLGSD 283
KT+T F ++K + QN GS+
Sbjct: 483 --SKTITEFW-----NEKKLQIQNLQGSE 504
>sp|O74944|POLK_SCHPO DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug40 PE=1 SV=3
Length = 547
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 147/250 (58%), Gaps = 9/250 (3%)
Query: 3 ASLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 57
AS+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S
Sbjct: 223 ASIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIAS 282
Query: 58 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 117
+ KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 283 NKRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVIL 341
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAE 174
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 342 SYIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQ 401
Query: 175 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL 234
+S ++QK GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++
Sbjct: 402 NVSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTI 461
Query: 235 RLIGLRVTQF 244
RL+G+R T+
Sbjct: 462 RLLGVRATKL 471
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 142/246 (57%), Gaps = 11/246 (4%)
Query: 3 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T V + + +IA E++ V + GLT S G++ N+ LAK+ SD NKP
Sbjct: 100 VSIDEAYLDVTHVDK----NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKP 155
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVF 121
+G V+ D V + LP+ K+ GIG+ + LR + GI T E++L+ L +F
Sbjct: 156 DGLMVITED--MVPEILKPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELF 212
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
+ + + + G+ R KSI E+T T++K LL + L E +E++S ++
Sbjct: 213 GKTGVEIYNRIR-GIDERPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEEL 271
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGL 239
KE L RT+T+K+KTA F V T++ T+ KYI SEDI + A +L + +L +RLIGL
Sbjct: 272 IKERLYCRTVTVKIKTADFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGL 331
Query: 240 RVTQFN 245
V+ +
Sbjct: 332 SVSNLS 337
>sp|Q5F8N2|DPO4_NEIG1 DNA polymerase IV OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=dinB PE=3 SV=1
Length = 352
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>sp|Q9JRG1|DPO4_NEIMA DNA polymerase IV OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=dinB PE=3 SV=1
Length = 352
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 136/246 (55%), Gaps = 17/246 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLR 235
+ ++ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + R
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFR 332
Query: 236 LIGLRV 241
LIG+ V
Sbjct: 333 LIGIGV 338
>sp|Q8UJK7|DPO42_AGRT5 DNA polymerase IV 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=dinB2 PE=3 SV=2
Length = 357
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPN
Sbjct: 100 SLDEAYLDVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPN 158
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
GQ V+ P + A F+ L ++K G+G T + FGI T ++ K A
Sbjct: 159 GQAVITPKNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQ 181
+ +F + G+ R RKS+ +E TFSV D L +L +AE + +
Sbjct: 215 GKSGAYFYGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCE 274
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ + G+T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+
Sbjct: 275 AQRVSGKTVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGV 334
Query: 240 RVTQFNEDK 248
++ D+
Sbjct: 335 TLSSLTNDQ 343
>sp|Q0A4X2|DPO4_ALHEH DNA polymerase IV OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=dinB PE=3 SV=1
Length = 355
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 140/244 (57%), Gaps = 12/244 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+++ C RG S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+
Sbjct: 103 SLDEAYLDVSD-CPRRGGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G V+P ++ F+++LP+ KI G+G+ T + + G+ T ++ + L
Sbjct: 162 GLHVIPPEQ--AEAFVAALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
S A F+ + G R RKS+ +E TF + A + ++A +A+ ++A + +
Sbjct: 219 SRARFYYELARGRDERPVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHR 278
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIG 238
GL GRT+TLK+K F TR+++ + + S+++I LL+ + PV RL+G
Sbjct: 279 RGLAGRTVTLKVKYHDFRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLG 335
Query: 239 LRVT 242
+ V+
Sbjct: 336 VTVS 339
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGITMTNL-EDKV 357
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q1JK63|DPO4_STRPC DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=dinB PE=3 SV=1
Length = 364
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q1JA16|DPO4_STRPB DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=dinB PE=3 SV=1
Length = 364
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 148/263 (56%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 IA---EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I+ + ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNVKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPN
Sbjct: 102 SLDEAYLDVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVF 121
GQFVLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL
Sbjct: 161 GQFVLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL---- 213
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
+H + L G+ P R+ + ++ ED L L +AE L
Sbjct: 214 NHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQ 273
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVT 207
+ ++ + +++TLKLKT F + TR +T
Sbjct: 274 ITRKNVEAQSVTLKLKTYDFRIITRTLT 301
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 135/253 (53%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD+TE SG+E IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVTEPK-----SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++AE
Sbjct: 215 EAFGSFGRSLYNRARGVDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ ++ F +
Sbjct: 332 YRLVGVGLSGFRD 344
>sp|B2UKN1|DPO4_AKKM8 DNA polymerase IV OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=dinB PE=3 SV=1
Length = 359
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 13/251 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEA+LD+TE + GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP
Sbjct: 102 SLDEAFLDVTE--NKPGIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKP 159
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+G F + R FI++LPI G+G T +R + N + + L F
Sbjct: 160 DGLFTIHPSRAE--KFIAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFG 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADM 180
+ A F+ + G+ +R RKS+ E T+ +VT +AL R L +AE L+ +
Sbjct: 218 KTGAIFY-NFARGVDDRPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRL 275
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLI 237
+ G RG TLTLK+K F +TR T+ + ++ E IL A L++ EL + RL+
Sbjct: 276 ARSGFRGNTLTLKVKFPDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLL 334
Query: 238 GLRVTQFNEDK 248
GL V+ E++
Sbjct: 335 GLSVSHPQEEQ 345
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 4 SLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 59
SLDEAYLD++E SGIE IA +R + EE LT SAG+APN+ LAK+ SD
Sbjct: 103 SLDEAYLDVSEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDW 157
Query: 60 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 119
KP+GQFV+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q +
Sbjct: 158 RKPDGQFVIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLE 214
Query: 120 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLS 177
S + G+ + +SISSE TF+ ED L L + ++A
Sbjct: 215 EAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTW 272
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS-- 233
+K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP
Sbjct: 273 NATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETR 331
Query: 234 LRLIGLRVTQFNE 246
RL+G+ + F E
Sbjct: 332 YRLVGVGLGGFRE 344
>sp|Q1J509|DPO4_STRPF DNA polymerase IV OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=dinB PE=3 SV=1
Length = 364
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAY+D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP
Sbjct: 114 SIDEAYVDVTN--NKLGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
I A+ ++A +Q G+T+ LK++ A F T+ VTL + ++ I + A +
Sbjct: 276 ISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDS 335
Query: 228 -AELPVSLRLIGLRVTQFNEDKV 249
+E P +RL+G+ +T EDKV
Sbjct: 336 LSENPAGIRLLGVTMTNL-EDKV 357
>sp|Q5FSM8|DPO4_GLUOX DNA polymerase IV OS=Gluconobacter oxydans (strain 621H) GN=dinB
PE=3 SV=1
Length = 356
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 9/246 (3%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+
Sbjct: 102 SLDEAYLDLTDHLGAYG-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPD 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ M F+++LP+ GIG +R GI T ++ ++
Sbjct: 161 GLFVI-TPAMGP-EFVAALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFG 217
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQ 181
A F+ + G+ R RKS+ +E+T+ +T + A ++ L +IA L Q
Sbjct: 218 KAATFYYGISRGIDHRPVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQ 276
Query: 182 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 239
+ L+ RT+TLK+K A F TRA TL + S E +L+ L+ P +RL+GL
Sbjct: 277 RRQLQARTVTLKVKYADFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGL 336
Query: 240 RVTQFN 245
++ F+
Sbjct: 337 TLSGFH 342
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 142/259 (54%), Gaps = 35/259 (13%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+TE + GIS ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP
Sbjct: 114 SIDEAYLDVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G +LP D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++
Sbjct: 172 HGLTLILPEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL--- 224
Query: 122 SHSTADFFLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------K 168
D F G L G +N+P R RKS ERT+ + LLYR +
Sbjct: 225 ----IDRFGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKE 275
Query: 169 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 227
L + + ++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++
Sbjct: 276 LISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEE 335
Query: 228 -AELPVSLRLIGLRVTQFN 245
++ +RL+G+ VT F
Sbjct: 336 IGKIEKGIRLLGVTVTNFQ 354
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 145/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
I A+ + A +Q G+T+ LK++ A F T+ VTL + + I + A +
Sbjct: 276 ISKNAKRVVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDT 335
Query: 229 --ELPVSLRLIGLRVTQFNEDKV 249
E V +RL+G+ +T EDK+
Sbjct: 336 LPEHTVGIRLLGVTMTNL-EDKM 357
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 145/263 (55%), Gaps = 36/263 (13%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
S+DEAYLD+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP
Sbjct: 114 SIDEAYLDVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKP 171
Query: 63 NG-QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 121
+G VL D + F++ LPI K G+GK + L D+ GI T +++L AV
Sbjct: 172 HGLTLVLKED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVP 220
Query: 122 SHSTADFFLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AE 171
+ D F G L G +N+P R RKSI SERT++ LLY++ AE
Sbjct: 221 EMTLIDHFGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAE 275
Query: 172 I---AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 228
I A+ + A +Q G+T+ LK++ A F T+ VTL + + I + A +
Sbjct: 276 ISKNAKRVVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDT 335
Query: 229 --ELPVSLRLIGLRVTQFNEDKV 249
E V +RL+G+ +T EDK+
Sbjct: 336 LPEHTVGIRLLGVTMTNL-EDKM 357
>sp|A1WY69|DPO4_HALHL DNA polymerase IV OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=dinB PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 118/216 (54%), Gaps = 5/216 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T R RG S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+
Sbjct: 103 SLDEAYLDVTGSQRFRG-SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G +V+P + ++++ PIR++ G+G T L + GI ++L VF
Sbjct: 162 GLYVVPPEDGP--AYVAAQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLG 218
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQK 182
+ A G+ R RKSI +ERTF T D ++++LA + ++ ++
Sbjct: 219 NRAGTLHDAARGIDHRPVRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEH 278
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 218
L RT+TLKL+ A FE TR V+ ++ + DI
Sbjct: 279 HELVARTVTLKLRYADFESITRRVSPPGPVAQAADI 314
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 142/255 (55%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F
Sbjct: 158 DGQFVIAPSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 G-SFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHA 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRL 236
++ GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL
Sbjct: 272 TRRTERIGRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRL 331
Query: 237 IGLRVTQFNEDKVRA 251
+G+ ++ F++ +++A
Sbjct: 332 VGVGLSGFSDPELQA 346
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 142/255 (55%), Gaps = 15/255 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVF 121
+GQFV+ R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F
Sbjct: 158 DGQFVIAPSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHF 214
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSAD 179
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 G-SFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHA 271
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRL 236
++ GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL
Sbjct: 272 TRRTERIGRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRL 331
Query: 237 IGLRVTQFNEDKVRA 251
+G+ ++ F++ +++A
Sbjct: 332 VGVGLSGFSDPELQA 346
>sp|P63992|DPO4_STAAN DNA polymerase IV OS=Staphylococcus aureus (strain N315) GN=dinB
PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|P63991|DPO4_STAAM DNA polymerase IV OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dinB PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|A5IU61|DPO4_STAA9 DNA polymerase IV OS=Staphylococcus aureus (strain JH9) GN=dinB
PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|A6U2Z9|DPO4_STAA2 DNA polymerase IV OS=Staphylococcus aureus (strain JH1) GN=dinB
PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|A7X420|DPO4_STAA1 DNA polymerase IV OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dinB PE=3 SV=1
Length = 356
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GLTVI--DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+
Sbjct: 103 SLDEAYLDITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPD 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ D GI ++ +K L +F
Sbjct: 162 GMTVI--DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+ + G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + +
Sbjct: 219 KRGRGLY-NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K +T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG
Sbjct: 277 NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIG 336
Query: 239 LRV 241
+ V
Sbjct: 337 VTV 339
>sp|Q98NW7|DPO43_RHILO DNA polymerase IV 3 OS=Rhizobium loti (strain MAFF303099) GN=dinB3
PE=3 SV=1
Length = 361
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 16/250 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+T+ R S IAE +R + E GLT SAG++ N+ LAK+ SD NKPN
Sbjct: 108 SLDEAYLDVTQ-NRLNISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPN 166
Query: 64 GQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF 121
GQFV+ P A F+ +LP+ K G+G T + + GI T ++ ++ S L F
Sbjct: 167 GQFVITPRHGPA---FVETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHF 222
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM- 180
S ++ + + R RKSI +E TF+ D L LAE+ +++
Sbjct: 223 GKSGL-WYYQIARAIDERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWG 279
Query: 181 --QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 236
+ +G+RGRT+TLK+K A F+ TR+ T+ I S D A+ LL + PV +RL
Sbjct: 280 YCEGKGIRGRTVTLKIKFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRL 338
Query: 237 IGLRVTQFNE 246
+G+ ++ +
Sbjct: 339 LGVTLSSLGD 348
>sp|Q6FFG4|DPO4_ACIAD DNA polymerase IV OS=Acinetobacter sp. (strain ADP1) GN=dinB PE=3
SV=1
Length = 351
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPN
Sbjct: 100 SLDEAYLDVTENLNNLP-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPN 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+ + VM FI +LP++KI G+G+VT+ L+ + + T ++ + ++L F
Sbjct: 159 GLCVIKPHQ--VMQFIQNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFG 215
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSA 178
+L G+ + R R+ IS E TF D+ L + + +AE +
Sbjct: 216 KYGKQLYL-YAQGIDHRSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQ 270
Query: 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL---- 234
+Q + L+ R + +KLK F+V + + ++ + S ++ K LL E+ ++L
Sbjct: 271 SLQNKNLQARGVNIKLKNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQY 329
Query: 235 RLIGLRVTQFN 245
RLIG+ + Q +
Sbjct: 330 RLIGVGLYQLS 340
>sp|Q92XH8|DPO42_RHIME DNA polymerase IV 2 OS=Rhizobium meliloti (strain 1021) GN=dinB2
PE=3 SV=2
Length = 354
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLD+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+
Sbjct: 100 SLDEAYLDVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPD 158
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 123
G FV+ F+ +LP++K G+G T ++ + GI T ++ +
Sbjct: 159 GLFVITPKHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFG 215
Query: 124 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 182
+ +F + G+ R RKSI +E TF D L + + + +
Sbjct: 216 KSGPYFYWIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEA 275
Query: 183 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 240
G+RG+T+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+
Sbjct: 276 SGIRGKTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVT 335
Query: 241 VTQFN 245
++ +
Sbjct: 336 LSSLD 340
>sp|Q3BP42|DPO4_XANC5 DNA polymerase IV OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=dinB PE=3 SV=1
Length = 359
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ ++ F++
Sbjct: 333 GVGLSGFSD 341
>sp|Q8PGJ4|DPO4_XANAC DNA polymerase IV OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=dinB PE=3 SV=1
Length = 359
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 4 SLDEAYLDITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP
Sbjct: 100 SLDEAYLDVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKP 157
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 122
+GQFV+ R V F+ L + +I G+GKV + L GI T ++ Q+
Sbjct: 158 DGQFVIAPSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHF 214
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADM 180
S G+ + +S+SSE TFS ED AL L + +AE
Sbjct: 215 GSFGQSLYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLAT 272
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 237
++ GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+
Sbjct: 273 RRTERIGRTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLV 332
Query: 238 GLRVTQFNE 246
G+ + F++
Sbjct: 333 GVGLGGFSD 341
>sp|A0AK80|DPO4_LISW6 DNA polymerase IV OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=dinB PE=3 SV=1
Length = 356
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 17/249 (6%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+TE ++G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP
Sbjct: 104 SLDEAYLDVTE--NKKGMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKP 161
Query: 63 NGQFVL-PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLC 118
G V+ P + A F+ +P+ K G+GKVT L + GI T + L+K S L+
Sbjct: 162 AGMTVVAPEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIR 216
Query: 119 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLS 177
+ H + G N P R RKS+ E TF D +L + L + A+ +
Sbjct: 217 ELHKHGYHLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVE 274
Query: 178 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 235
A + K G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+R
Sbjct: 275 ARLIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIR 334
Query: 236 LIGLRVTQF 244
LIGL VT
Sbjct: 335 LIGLTVTNL 343
>sp|Q18A91|DPO4_CLOD6 DNA polymerase IV OS=Clostridium difficile (strain 630) GN=dinB
PE=3 SV=1
Length = 365
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 4 SLDEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 62
SLDEAYLD+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KP
Sbjct: 104 SLDEAYLDVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKP 161
Query: 63 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLL 117
NG V+ + F+ LP+ K G+GKVT + L+++ GI T C + + L
Sbjct: 162 NGLTVITEEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----L 214
Query: 118 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEM 175
+F + + G+ R RKS+ +E T S + D+ L E+ E
Sbjct: 215 ENIFKKRGYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEE 273
Query: 176 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-- 233
+ ++ G+TLTLK+K F TR+++L+ YI DI LL+ + V+
Sbjct: 274 VCHRLKNSEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGK 332
Query: 234 -LRLIGLRVTQFNEDK 248
+RL+G+ ++ ++ K
Sbjct: 333 QIRLLGVTISNLSDKK 348
>sp|A3CSG3|DPO4_METMJ DNA polymerase IV OS=Methanoculleus marisnigri (strain ATCC 35101 /
DSM 1498 / JR1) GN=dbh PE=3 SV=1
Length = 360
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
S+DEAYLD+++ +A ++ V EE GLTCS GVAP + +AK+ SD KP+
Sbjct: 108 SIDEAYLDVSDAGSFPAAG--ALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPD 165
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG--SLLCAVF 121
G ++ D +A F++SLP+ +I GIGK T LR GI T ++ ++ ++ +
Sbjct: 166 GLTIVRPDEVA--GFLASLPVGRIPGIGKKTGEDLRQA-GILTVGDLARRDVQEVIARLG 222
Query: 122 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADM 180
L+ G+ G + KSIS E TF T D +L LAE+A+ ++ +
Sbjct: 223 RSGVRVHHLARGIDDGEVQGREG--CKSISRETTFEADTADPPVLAGTLAELADDVAETL 280
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLI 237
+ + LR RT+T+K++ F+ TR+ TL ++ S E I + AS LL L PV RLI
Sbjct: 281 RADNLRCRTVTVKVRYRGFQTHTRSRTLPRFTSDPETIRRAASGLLLPFLNGEPV--RLI 338
Query: 238 GLRVTQF 244
G+R++
Sbjct: 339 GVRLSML 345
>sp|Q4L7K8|DPO4_STAHJ DNA polymerase IV OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=dinB PE=3 SV=1
Length = 358
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 134/250 (53%), Gaps = 11/250 (4%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEAYLDIT + R +S +IA +R ++E+ GLT SAGV+ N+ LAK+ S +NKPN
Sbjct: 103 SLDEAYLDITHLVRP-DLSASKIATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPN 161
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 122
G V+ D V + +L I G+GK ++ ++ + I T +++ K L F
Sbjct: 162 GMKVI--DYNNVNDILMNLDIGDFPGVGKASKKVMHN-HDIYTGKDLYDKTEFELIRWFG 218
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 180
+L G+ + R RKS+ +ERTFS V +D+ +L +K+ E++ + +
Sbjct: 219 KRGRGLYLK-ARGIDHSEVKATRVRKSVGTERTFSTDVNDDEEIL-QKIWELSGKTAERL 276
Query: 181 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIG 238
K G T+T+KLKT +E ++ +L++ +S DI A L + V +RLIG
Sbjct: 277 SKLQKSGSTVTVKLKTYQYETFSKQRSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIG 336
Query: 239 LRVTQFNEDK 248
+ V + +
Sbjct: 337 VTVGNLEQSR 346
>sp|B8FBE8|DPO4_DESAA DNA polymerase IV OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=dinB PE=3 SV=1
Length = 396
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 13/247 (5%)
Query: 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 63
SLDEA++D+T R G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPN
Sbjct: 102 SLDEAFMDVTSSTRLFG-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPN 160
Query: 64 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFS 122
G V+P D+ F+ LPI ++ G+G + + L + G+ T ++ + +L A F
Sbjct: 161 GLLVVPADQ--TQEFLDPLPISRLWGVGPASRNKLISL-GVKTIRDVRKLTQEMLSANFG 217
Query: 123 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSAD 179
+ + + G+ KSI E TF T ++A Y+ + ++E ++
Sbjct: 218 RN-GEVIYAFARGMDDRPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARR 274
Query: 180 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLI 237
M+KE GRT+ +K+K A F TR+VTL+ +I HA LL+ L S +RL+
Sbjct: 275 MRKEEATGRTVNIKVKYADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLL 334
Query: 238 GLRVTQF 244
G+ ++Q
Sbjct: 335 GVTLSQL 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,703,286
Number of Sequences: 539616
Number of extensions: 7339345
Number of successful extensions: 20826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 20030
Number of HSP's gapped (non-prelim): 315
length of query: 481
length of database: 191,569,459
effective HSP length: 121
effective length of query: 360
effective length of database: 126,275,923
effective search space: 45459332280
effective search space used: 45459332280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)