Query 011631
Match_columns 481
No_of_seqs 179 out of 1384
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pzp_A DNA polymerase kappa; D 100.0 1.3E-49 4.4E-54 427.8 27.7 231 17-248 273-509 (517)
2 1jx4_A DNA polymerase IV (fami 100.0 1.6E-48 5.4E-53 400.7 21.7 238 2-247 101-343 (352)
3 3gqc_A DNA repair protein REV1 100.0 2.9E-48 1E-52 415.3 24.3 244 2-248 237-499 (504)
4 1t94_A Polymerase (DNA directe 100.0 1.6E-48 5.6E-53 414.0 20.2 229 19-248 219-453 (459)
5 3bq0_A POL IV, DBH, DNA polyme 100.0 3.2E-48 1.1E-52 398.7 21.4 237 2-247 101-344 (354)
6 4f4y_A POL IV, DNA polymerase 100.0 4.5E-48 1.5E-52 399.3 21.9 238 2-248 101-345 (362)
7 4dez_A POL IV 1, DNA polymeras 100.0 9.4E-49 3.2E-53 402.9 15.5 241 2-248 103-347 (356)
8 3osn_A DNA polymerase IOTA; ho 100.0 2.3E-47 8E-52 401.1 26.0 244 2-248 122-417 (420)
9 4ecq_A DNA polymerase ETA; tra 100.0 5.2E-45 1.8E-49 384.8 22.7 218 24-246 197-434 (435)
10 3mfi_A DNA polymerase ETA; DNA 100.0 2.5E-45 8.7E-50 394.5 20.3 223 23-248 248-517 (520)
11 2aq4_A DNA repair protein REV1 100.0 2.5E-45 8.6E-50 387.1 19.4 243 2-246 159-433 (434)
12 1im4_A DBH; DNA polymerase PAL 100.0 3.9E-29 1.3E-33 241.6 8.5 113 2-118 106-220 (221)
13 1unn_C POL IV, DNA polymerase 99.5 7.1E-14 2.4E-18 121.1 11.3 97 148-247 5-106 (115)
14 2i5o_A DNA polymerase ETA; zin 98.8 2.9E-10 1E-14 80.1 0.0 36 388-426 4-39 (39)
15 1wcn_A Transcription elongatio 95.9 0.0066 2.2E-07 47.8 4.0 50 84-134 9-61 (70)
16 3mab_A Uncharacterized protein 94.9 0.024 8.2E-07 47.1 4.4 31 83-114 5-35 (93)
17 3bqs_A Uncharacterized protein 94.8 0.025 8.4E-07 47.1 4.2 31 83-114 5-35 (93)
18 2a1j_A DNA repair endonuclease 94.6 0.049 1.7E-06 41.8 5.2 49 84-134 6-56 (63)
19 1z00_B DNA repair endonuclease 93.7 0.068 2.3E-06 43.5 4.5 49 84-134 20-70 (84)
20 1z3e_B DNA-directed RNA polyme 93.2 0.13 4.4E-06 40.8 5.3 51 79-131 6-59 (73)
21 3gfk_B DNA-directed RNA polyme 90.5 0.29 9.8E-06 39.4 4.5 52 78-131 12-66 (79)
22 3k4g_A DNA-directed RNA polyme 89.5 0.59 2E-05 38.2 5.7 51 80-132 10-63 (86)
23 1ci4_A Protein (barrier-TO-aut 88.9 0.26 8.7E-06 40.5 3.0 33 79-112 15-47 (89)
24 1b22_A DNA repair protein RAD5 87.9 0.14 4.8E-06 44.0 1.0 55 80-135 21-80 (114)
25 1coo_A RNA polymerase alpha su 87.1 0.42 1.4E-05 40.0 3.4 49 81-131 23-74 (98)
26 1kft_A UVRC, excinuclease ABC 84.2 0.54 1.8E-05 37.0 2.6 49 81-131 23-74 (78)
27 1z00_A DNA excision repair pro 84.2 1.1 3.8E-05 36.0 4.5 48 84-133 21-71 (89)
28 2a1j_B DNA excision repair pro 84.1 1.1 3.7E-05 36.3 4.4 48 84-133 34-84 (91)
29 1vq8_Y 50S ribosomal protein L 83.3 0.23 7.8E-06 48.1 0.0 50 80-130 13-65 (241)
30 1pzn_A RAD51, DNA repair and r 82.7 1.2 4E-05 44.9 5.0 53 80-133 33-88 (349)
31 2nrt_A Uvrabc system protein C 81.0 1.3 4.6E-05 42.1 4.4 49 82-132 168-218 (220)
32 2va8_A SSO2462, SKI2-type heli 80.4 1.1 3.9E-05 48.9 4.2 48 82-131 657-705 (715)
33 2kz3_A Putative uncharacterize 80.0 2.2 7.6E-05 34.4 4.8 43 81-124 3-46 (83)
34 2q0z_X Protein Pro2281; SEC63, 78.7 3.7 0.00013 41.0 7.1 60 75-135 152-216 (339)
35 2i1q_A DNA repair and recombin 78.6 1.3 4.3E-05 43.6 3.5 52 82-134 3-57 (322)
36 2p6r_A Afuhel308 helicase; pro 77.9 1.8 6E-05 47.4 4.7 52 82-134 632-683 (702)
37 2fmp_A DNA polymerase beta; nu 76.8 1.3 4.5E-05 44.6 3.1 29 84-113 100-128 (335)
38 2zj8_A DNA helicase, putative 75.6 2.5 8.5E-05 46.3 5.2 53 81-134 645-700 (720)
39 1gm5_A RECG; helicase, replica 74.7 0.94 3.2E-05 50.8 1.5 31 82-113 115-145 (780)
40 2bcq_A DNA polymerase lambda; 74.3 1.8 6.2E-05 43.6 3.3 28 85-113 99-126 (335)
41 1x2i_A HEF helicase/nuclease; 74.2 2 7E-05 32.7 2.9 48 83-132 15-65 (75)
42 3im1_A Protein SNU246, PRE-mRN 73.8 2.8 9.7E-05 41.7 4.6 53 82-135 157-212 (328)
43 2ihm_A POL MU, DNA polymerase 73.3 1.6 5.6E-05 44.4 2.7 29 83-112 103-131 (360)
44 1jms_A Terminal deoxynucleotid 71.4 1.9 6.5E-05 44.3 2.8 29 83-112 122-150 (381)
45 2z43_A DNA repair and recombin 69.1 0.98 3.4E-05 44.7 0.0 42 81-123 11-53 (324)
46 2duy_A Competence protein come 58.9 3.9 0.00013 31.6 1.7 30 84-113 29-58 (75)
47 3lda_A DNA repair protein RAD5 58.0 6.7 0.00023 40.3 3.8 46 78-124 77-125 (400)
48 2bgw_A XPF endonuclease; hydro 55.7 7.7 0.00026 36.1 3.5 108 21-132 97-213 (219)
49 3c65_A Uvrabc system protein C 54.8 2.6 8.8E-05 40.3 0.0 48 81-130 172-221 (226)
50 1u9l_A Transcription elongatio 47.6 21 0.00071 27.7 4.2 44 88-132 12-58 (70)
51 2w9m_A Polymerase X; SAXS, DNA 45.6 11 0.00037 40.6 3.1 29 84-113 99-127 (578)
52 1faq_A RAF-1; transferase, ser 45.3 5.5 0.00019 28.5 0.5 17 386-403 21-37 (52)
53 1dgs_A DNA ligase; AMP complex 42.7 14 0.00049 40.5 3.5 51 80-130 439-492 (667)
54 1v5w_A DMC1, meiotic recombina 42.0 5.4 0.00018 39.8 0.0 42 81-123 23-68 (343)
55 1ixr_A Holliday junction DNA h 42.0 13 0.00046 34.3 2.7 53 83-135 73-129 (191)
56 2od8_B DNA ligase I, mitochond 41.5 9.6 0.00033 23.3 1.1 19 253-271 3-21 (26)
57 2owo_A DNA ligase; protein-DNA 40.7 19 0.00065 39.6 4.1 52 79-130 443-497 (671)
58 4f92_B U5 small nuclear ribonu 40.1 13 0.00043 45.4 2.8 40 82-122 1557-1597(1724)
59 3vdp_A Recombination protein R 38.7 10 0.00035 35.8 1.3 16 84-99 28-43 (212)
60 3b0x_A DNA polymerase beta fam 36.7 17 0.00057 39.0 2.8 30 84-113 95-124 (575)
61 1cuk_A RUVA protein; DNA repai 35.1 16 0.00056 34.0 2.1 50 83-132 74-127 (203)
62 2lvt_A Zinc finger and BTB dom 41.2 8.1 0.00028 22.5 0.0 25 393-419 2-26 (29)
63 1znf_A 31ST zinc finger from X 34.5 13 0.00043 21.1 0.9 12 394-405 2-13 (27)
64 1vdd_A Recombination protein R 33.4 14 0.00047 35.3 1.3 16 84-99 14-29 (228)
65 3arc_U Photosystem II 12 kDa e 32.8 16 0.00056 30.1 1.5 31 84-114 28-58 (97)
66 1l8d_A DNA double-strand break 31.9 8.6 0.00029 31.9 -0.3 22 393-414 47-68 (112)
67 1s5l_U Photosystem II 12 kDa e 31.1 21 0.00072 31.3 2.0 31 84-114 65-95 (134)
68 2kvf_A Zinc finger and BTB dom 30.6 12 0.00042 21.5 0.3 12 393-404 3-14 (28)
69 2kvh_A Zinc finger and BTB dom 30.0 13 0.00043 21.3 0.3 12 393-404 3-14 (27)
70 3j21_V 50S ribosomal protein L 28.9 19 0.00064 27.8 1.1 14 393-406 4-17 (66)
71 2bcq_A DNA polymerase lambda; 28.8 28 0.00096 34.8 2.8 52 84-138 59-119 (335)
72 2edu_A Kinesin-like protein KI 28.2 28 0.00097 28.2 2.2 31 84-114 42-76 (98)
73 1ard_A Yeast transcription fac 27.8 17 0.00057 20.8 0.6 12 393-404 2-13 (29)
74 4glx_A DNA ligase; inhibitor, 27.8 33 0.0011 37.1 3.3 47 83-130 447-497 (586)
75 1klr_A Zinc finger Y-chromosom 27.3 19 0.00066 20.6 0.8 13 393-405 2-14 (30)
76 1paa_A Yeast transcription fac 26.9 20 0.00069 20.7 0.8 12 393-404 2-13 (30)
77 2kvg_A Zinc finger and BTB dom 26.9 14 0.00049 21.3 0.1 12 393-404 3-14 (27)
78 2lvu_A Zinc finger and BTB dom 32.9 13 0.00046 21.0 0.0 12 393-404 2-13 (26)
79 2m0f_A Zinc finger and BTB dom 26.8 15 0.00053 20.9 0.3 12 393-404 2-13 (29)
80 4rxn_A Rubredoxin; electron tr 26.8 17 0.00059 26.9 0.6 10 392-401 35-44 (54)
81 2lvr_A Zinc finger and BTB dom 32.7 14 0.00047 21.4 0.0 12 393-404 3-14 (30)
82 2m0e_A Zinc finger and BTB dom 26.6 21 0.00071 20.2 0.9 13 393-405 2-14 (29)
83 2elr_A Zinc finger protein 406 26.2 21 0.00071 21.8 0.8 12 393-404 9-20 (36)
84 2elx_A Zinc finger protein 406 24.6 18 0.00061 21.9 0.3 12 393-404 7-18 (35)
85 2i5h_A Hypothetical protein AF 24.4 58 0.002 30.5 3.8 43 84-127 134-183 (205)
86 3tvk_A DGC, diguanylate cyclas 24.0 35 0.0012 30.6 2.3 42 4-48 81-130 (179)
87 1vq8_U 50S ribosomal protein L 23.8 26 0.0009 27.0 1.1 13 394-406 4-16 (66)
88 2m0d_A Zinc finger and BTB dom 23.6 19 0.00066 20.6 0.3 12 393-404 3-14 (30)
89 1srk_A Zinc finger protein ZFP 23.3 20 0.00067 21.9 0.3 12 393-404 7-18 (35)
90 2elm_A Zinc finger protein 406 23.3 20 0.00068 22.5 0.3 12 393-404 9-20 (37)
91 2ihm_A POL MU, DNA polymerase 23.1 91 0.0031 31.4 5.4 52 84-138 63-125 (360)
92 2elv_A Zinc finger protein 406 22.8 20 0.0007 22.0 0.3 12 393-404 9-20 (36)
93 2elq_A Zinc finger protein 406 22.7 21 0.0007 22.0 0.3 13 393-405 9-21 (36)
94 1rik_A E6APC1 peptide; E6-bind 22.7 21 0.00071 20.4 0.3 12 393-404 2-13 (29)
95 2kfq_A FP1; protein, de novo p 22.6 22 0.00077 21.5 0.5 10 393-402 2-11 (32)
96 2elt_A Zinc finger protein 406 22.4 21 0.00072 21.8 0.3 12 393-404 9-20 (36)
97 2a6h_A DNA-directed RNA polyme 22.3 18 0.00063 36.0 0.0 47 81-129 253-302 (315)
98 3ung_C CMR2DHD; ferredoxin fol 21.4 26 0.00088 38.5 0.9 13 391-403 265-277 (693)
99 2elp_A Zinc finger protein 406 21.2 23 0.00079 21.9 0.3 12 393-404 9-20 (37)
100 3lu0_A DNA-directed RNA polyme 21.1 20 0.00069 36.0 0.0 47 81-129 254-303 (329)
101 1rim_A E6APC2 peptide; E6-bind 20.6 26 0.0009 21.3 0.5 12 393-404 2-13 (33)
102 1p7a_A BF3, BKLF, kruppel-like 20.5 26 0.0009 21.5 0.5 12 393-404 11-22 (37)
103 2phn_A F420-0:gamma-glutamyl l 20.5 57 0.002 31.5 3.1 43 4-47 110-152 (254)
No 1
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=427.84 Aligned_cols=231 Identities=47% Similarity=0.751 Sum_probs=217.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhccCCCcccCCCCHHHHH
Q 011631 17 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEH 96 (481)
Q Consensus 17 ~l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~LPI~~LpGIG~kt~~ 96 (481)
++||.++.++|++||++|+++||||||||||+||+||||||+.+||||+++|+++.+++.+||+++||++|||||+++++
T Consensus 273 ~lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~ 352 (517)
T 3pzp_A 273 VVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEK 352 (517)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHH
Confidence 34665689999999999999999999999999999999999999999999999865578999999999999999999999
Q ss_pred HHhhccCCCcHHHHHhchHHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCccCCHHHHHHHHHHHHHHH
Q 011631 97 ILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 176 (481)
Q Consensus 97 kL~~~lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~~~d~e~L~~~L~~La~eL 176 (481)
+|++ +||+||+||++.+..|.++||...+.++|.+|+|+|..++.+..++|||++++||+.+.+.+++..+|..|+++|
T Consensus 353 ~L~~-lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~~~~~~e~l~~~l~~La~~l 431 (517)
T 3pzp_A 353 MLKA-LGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSEL 431 (517)
T ss_dssp HHHH-TTCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHH-hCCCcHHHHHhhHHHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEcccccCHHHHHHHHHHHHHHH
Confidence 9997 999999999998888999999988899999999999999988888999999999998888999999999999999
Q ss_pred HHHHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEEecCCCCc
Q 011631 177 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 248 (481)
Q Consensus 177 ~~RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~------~~~VR~IGV~vs~L~~~~ 248 (481)
+.||+++++.+++|+|++++.+|...+++.+++.||++..+|+++|..||++.| +.+||+|||++++|.+.+
T Consensus 432 ~~rLr~~~~~~~~vtlklk~~~f~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 432 AQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp HHHHHTTTCCBSCEEEEEEETTSCEEEECCCCSSCBCSHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEECCCCCCC
T ss_pred HHHHHHcCCceeEEEEEEEecCCceeeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEecCCcChh
Confidence 999999999999999999999999999999999999999999999999999864 346999999999999875
No 2
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=1.6e-48 Score=400.65 Aligned_cols=238 Identities=26% Similarity=0.386 Sum_probs=225.6
Q ss_pred CCccceEEEecCCcccccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhcc
Q 011631 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 81 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~ 81 (481)
+|||||+|||+|++.++|| ++.++|++||++|++++|+|||||||+||++||||++.+||||+++|+++ ++.+||++
T Consensus 101 ~~SiDE~~lDvt~~~~~~~-~~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~ 177 (352)
T 1jx4_A 101 IASIDEAYLDISDKVRDYR-EAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDE--EVKRLIRE 177 (352)
T ss_dssp EEETTEEEEECTTTCSSHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHH--HHHHHHHH
T ss_pred EecCceEEEeccCcccccc-cHHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHH--HHHHHHHh
Confidence 5899999999999999888 89999999999999999999999999999999999999999999999875 79999999
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCc-c
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-T 159 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~-~ 159 (481)
+||++|||||++++++|++ +||+|++||++++ ..|.++||...+.++|..++|+|..++.+.. +|||+++++|+. +
T Consensus 178 lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~ 255 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKK-LGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMKRNS 255 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHT-TTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEEEEE
T ss_pred CCCCcccccCHHHHHHHHH-cCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecCCCC
Confidence 9999999999999999997 9999999999998 8999999997688899999999999998877 999999999997 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC---CCCEEE
Q 011631 160 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRL 236 (481)
Q Consensus 160 ~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~---~~~VR~ 236 (481)
.+.+++..+|..|+++|+.||+++ .+++|+|++++++|...+++++++.||++...|++ +..+|++++ +.+||+
T Consensus 256 ~~~~~l~~~l~~l~~~l~~rL~~~--~~~~v~l~l~~~~~~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~~~~~~vr~ 332 (352)
T 1jx4_A 256 RNLEEIKPYLFRAIEESYYKLDKR--IPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE-SVKLLQKILEEDERKIRR 332 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHCCSCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEEEECCCCcceeEEecCCCCCCHHHHHH-HHHHHHHHHhcCCCCEEE
Confidence 899999999999999999999998 99999999999999999999999999999999999 999999975 479999
Q ss_pred EEEEEecCCCC
Q 011631 237 IGLRVTQFNED 247 (481)
Q Consensus 237 IGV~vs~L~~~ 247 (481)
|||++++|.+.
T Consensus 333 lgv~~~~l~~~ 343 (352)
T 1jx4_A 333 IGVRFSKFIEA 343 (352)
T ss_dssp EEEEEEEEC--
T ss_pred EEEEEeCCCCc
Confidence 99999999764
No 3
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-48 Score=415.33 Aligned_cols=244 Identities=26% Similarity=0.398 Sum_probs=229.6
Q ss_pred CCccceEEEecCCcccccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhcc
Q 011631 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 81 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~ 81 (481)
+|||||+|||+|++.++||.++.++|++||++|++++|||||||||+||++||||++.+||+|+++|+++ ++.+||++
T Consensus 237 ~~SiDEafLDvtg~~~l~g~~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~--~~~~~L~~ 314 (504)
T 3gqc_A 237 AVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPE--EVDDFIRG 314 (504)
T ss_dssp EEETTEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGG--GHHHHHHH
T ss_pred EecCCeEEEeccchHhhcCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHH--HHHHHHhc
Confidence 5899999999999998887689999999999999999999999999999999999999999999999886 78999999
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCc-c
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-T 159 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~-~ 159 (481)
+||++|||||++++++|++ +||+|++||++++ ..|.++||...+.+||..|+|+|..++.+..++|||+++++|+. .
T Consensus 315 LPV~~l~GIG~~t~~kL~~-lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~d~ 393 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLAS-LGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRF 393 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHH-TTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSCCC
T ss_pred CChhHhhCcCHHHHHHHHH-cCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCCCC
Confidence 9999999999999999997 9999999999998 89999999888899999999999999988888999999999998 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEec---------CC------eeeEEEEEcCCCCCCHHHHHHHHHH
Q 011631 160 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA---------SF------EVRTRAVTLQKYISSSEDILKHASV 224 (481)
Q Consensus 160 ~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~---------~f------~~~srs~~l~~pt~d~~~L~~~a~~ 224 (481)
.+.+++..+|..|+++|+.||+++++.+++|+|++++. +| ...+++++++.||++..+|++.|..
T Consensus 394 ~~~~~l~~~L~~La~~l~~rLr~~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~ 473 (504)
T 3gqc_A 394 TQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLN 473 (504)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999874 23 4678999999999999999999999
Q ss_pred HHHhhC-C-CCEEEEEEEEecCCCCc
Q 011631 225 LLKAEL-P-VSLRLIGLRVTQFNEDK 248 (481)
Q Consensus 225 LL~~~~-~-~~VR~IGV~vs~L~~~~ 248 (481)
||++++ + .+||+|||++++|.+.+
T Consensus 474 Ll~~~~~~~~~vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 474 MFHTMKLNISDMRGVGIHVNQLVPTN 499 (504)
T ss_dssp HHHTSCCCGGGEEEEEEEEEEEEECC
T ss_pred HHHHhcCCCCCeEEEEEEEcCcccCC
Confidence 999986 3 68999999999999875
No 4
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=1.6e-48 Score=414.02 Aligned_cols=229 Identities=48% Similarity=0.764 Sum_probs=201.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhccCCCcccCCCCHHHHHHH
Q 011631 19 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHIL 98 (481)
Q Consensus 19 ~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~LPI~~LpGIG~kt~~kL 98 (481)
||.++.++|++||++|+++||||||||||+||+||||||+.+||||+++|+++.+++.+||+++||++|||||++++++|
T Consensus 219 fg~~~~~la~~IR~~I~~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L 298 (459)
T 1t94_A 219 FGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKML 298 (459)
T ss_dssp CCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHH
Confidence 44468999999999999999999999999999999999999999999999985347899999999999999999999999
Q ss_pred hhccCCCcHHHHHhchHHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCccCCHHHHHHHHHHHHHHHHH
Q 011631 99 RDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 178 (481)
Q Consensus 99 ~~~lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~~~d~e~L~~~L~~La~eL~~ 178 (481)
++ +||+|++||++.+..|.++||...+.++|..|+|+|..++.+..++|||+++++|+.+.+.+++..+|..|+++|+.
T Consensus 299 ~~-lGI~T~gdL~~~~~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~~~~~~~~l~~~l~~L~~~l~~ 377 (459)
T 1t94_A 299 KA-LGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQ 377 (459)
T ss_dssp HH-TTCCBHHHHHHTHHHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEEEECCHHHHHHHHHHHHSSTTC
T ss_pred HH-cCCCcHHHHHhhHHHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 97 99999999999887899999998899999999999999998888899999999999888999999999999999999
Q ss_pred HHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEEecCCCCc
Q 011631 179 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 248 (481)
Q Consensus 179 RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~------~~~VR~IGV~vs~L~~~~ 248 (481)
||++.++.+++|+|++++.+|...+++.+++.||++...|++.+..||++++ +.+||+|||++++|.+..
T Consensus 378 rL~~~~~~~~~vtl~l~~~~~~~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~~~~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 378 DLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 453 (459)
T ss_dssp CCC---CCCSCEEEEEEETTCCEEEECC-CCCCCCC--CHHHHHHHHHHHHHSSSTTSCCCEEEEEEEECC-----
T ss_pred HHHHhCCCcceEEEEEEECCCceeeEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEEccCcCcc
Confidence 9999999999999999999999999999999999999999999999999875 356999999999999864
No 5
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=3.2e-48 Score=398.70 Aligned_cols=237 Identities=26% Similarity=0.371 Sum_probs=225.6
Q ss_pred CCccceEEEecCCccc-ccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhc
Q 011631 2 AASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 80 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~-l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~ 80 (481)
+|||||+|||+|++.+ +|| ++.++|++||++|++++|+|||||||+||++||||++.+||||+++++++ ++.+||+
T Consensus 101 ~~SiDE~~lDvt~~~~~~~~-~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~ 177 (354)
T 3bq0_A 101 VASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLN 177 (354)
T ss_dssp EEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGG--GHHHHHH
T ss_pred EecCCeeEEecCcchhhccC-CHHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHH--HHHHHHH
Confidence 5899999999999988 888 89999999999999999999999999999999999999999999999875 7899999
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCc-
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV- 158 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~- 158 (481)
++||++|||||++++++|++ +||+|++||++++ ..|.++||...+.++|..++|+|..++.+.. +|||+++++|+.
T Consensus 178 ~lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~ 255 (354)
T 3bq0_A 178 ELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLPYN 255 (354)
T ss_dssp HCBSTTSTTCCHHHHHHHTT-TTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEEEE
T ss_pred hCCcccccCcCHHHHHHHHH-cCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCCCC
Confidence 99999999999999999997 9999999999998 8999999997688899999999999998877 999999999997
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-C-C-C-E
Q 011631 159 TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-P-V-S-L 234 (481)
Q Consensus 159 ~~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~-~-~-~-V 234 (481)
+.+.+++..+|..|+++|+.||++ .+++|+|++++++|...+++++++.||++...|++ +..+|++++ + . + |
T Consensus 256 ~~~~~~l~~~l~~l~~~l~~rL~~---~~~~v~l~~~~~~~~~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~~~~~~~~v 331 (354)
T 3bq0_A 256 TRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKV-AEDLLRELLVRDKRRNV 331 (354)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTTSS---EEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHTTSCSSCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh---hCCEEEEEEEeCCCCcceEEEECCCccCCHHHHHH-HHHHHHHHhccCCCCce
Confidence 689999999999999999999998 99999999999999999999999999999999999 999999986 3 3 8 9
Q ss_pred EEEEEEEecCCCC
Q 011631 235 RLIGLRVTQFNED 247 (481)
Q Consensus 235 R~IGV~vs~L~~~ 247 (481)
|+|||++++|.+.
T Consensus 332 r~lgv~~~~l~~~ 344 (354)
T 3bq0_A 332 RRIGVKLDNIIIN 344 (354)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEEEEecCCCC
Confidence 9999999999876
No 6
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=4.5e-48 Score=399.35 Aligned_cols=238 Identities=27% Similarity=0.380 Sum_probs=224.7
Q ss_pred CCccceEEEecCCccc-ccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhc
Q 011631 2 AASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 80 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~-l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~ 80 (481)
+|||||+|||+|++.+ +|| ++.++|++||++|++++|+|||||||+||++||||++.+||+|+++++++ ++.+||+
T Consensus 101 ~~SiDEa~LDvt~~~~~~~~-~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~ 177 (362)
T 4f4y_A 101 VASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLN 177 (362)
T ss_dssp EEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTT--THHHHHH
T ss_pred EecCceEEEecCCccccccC-CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHH--HHHHHHH
Confidence 5899999999999888 787 89999999999999999999999999999999999999999999999886 7899999
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCc-
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV- 158 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~- 158 (481)
++||++|||||++++++|++ +||+|++||++++ ..|.++||...+.++|..++|+|..++.+..+ |||+++++|+.
T Consensus 178 ~lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~~ 255 (362)
T 4f4y_A 178 ELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPYN 255 (362)
T ss_dssp TCBSTTSTTCCSTTHHHHHH-TTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEEE
T ss_pred hCChhhccCCCHHHHHHHHH-cCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCCC
Confidence 99999999999999999997 9999999999998 89999999767899999999999999988777 99999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC--C-CC-E
Q 011631 159 TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--P-VS-L 234 (481)
Q Consensus 159 ~~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~--~-~~-V 234 (481)
+.+.+++..+|..|+++|+.||++ .+++|+|++++++|...+++.+++.| +++..|++.+..+|++++ + .+ |
T Consensus 256 ~~~~~~l~~~l~~l~~~l~~rLr~---~~~~v~l~i~~~~~~~~t~s~~l~~p-~d~~~i~~~a~~ll~~~~~~~~~~~v 331 (362)
T 4f4y_A 256 TRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIMEDLDILSKGKKFKHG-ISIDNAYKVAEDLLRELLVRDKRRNV 331 (362)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEEEEETTSCEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTSSCSCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh---CCCEEEEEEEECCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHHHhhcCCccE
Confidence 689999999999999999999998 99999999999999999999999999 999999999999999987 3 67 9
Q ss_pred EEEEEEEecCCCCc
Q 011631 235 RLIGLRVTQFNEDK 248 (481)
Q Consensus 235 R~IGV~vs~L~~~~ 248 (481)
|++||++++|.+..
T Consensus 332 r~lGV~~~~L~~~~ 345 (362)
T 4f4y_A 332 RRIGVKLDNIIINK 345 (362)
T ss_dssp EEEEEEEEEEEC--
T ss_pred EEEEEEEeccccCC
Confidence 99999999998764
No 7
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=9.4e-49 Score=402.90 Aligned_cols=241 Identities=27% Similarity=0.381 Sum_probs=128.5
Q ss_pred CCccceEEEecCCcccccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhcc
Q 011631 2 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 81 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~ 81 (481)
+|||||+|||+|+.. ++ ++.++|++||++|+++||+|||||||+||+|||+|++.+||+|+++++++ ++.+||++
T Consensus 103 ~~SiDEafld~t~~~--~~-~~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~--~~~~~L~~ 177 (356)
T 4dez_A 103 VWGWDEAYLGADLPD--ES-DPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEA--NWMTVMGD 177 (356)
T ss_dssp EETTTEEEEEEECCT--TC-CHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTT--THHHHHTT
T ss_pred ecCcchhheeccccc--CC-CHHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccch--hhhhhhhc
Confidence 589999999999874 34 78999999999999999999999999999999999999999999999886 68999999
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCC-CCCcccccccccCc-
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA-RFRKSISSERTFSV- 158 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~-~~~KSIs~e~tF~~- 158 (481)
+||++|||||++++++|++ +||+|++||++++ ..|.++||...+.++|.+++|+|..++.+. ..+|||++++||+.
T Consensus 178 lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~~~ 256 (356)
T 4dez_A 178 RPPDALWGVGPKTTKKLAA-MGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFPQD 256 (356)
T ss_dssp SCGGGSTTCCHHHHHHHHH-TTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC-----------------
T ss_pred CcHHHHcCCchhHHHHHHH-cCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCcccccccccccccccccccCCCc
Confidence 9999999999999999997 9999999999998 899999998889999999999999998754 46799999999987
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEecCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-CCCEEEE
Q 011631 159 TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLI 237 (481)
Q Consensus 159 ~~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~-~~~VR~I 237 (481)
+.+.+++..+|..|+.+++.||+++++.+++|+|++++++|...+++.+++.||+++.+|++.|..||++++ +.+||+|
T Consensus 257 ~~~~~~l~~~l~~la~~~~~rLr~~~~~~~~l~v~ir~~~f~~~t~~~~l~~pt~d~~~i~~~a~~ll~~~~~~~~vRli 336 (356)
T 4dez_A 257 LTERREMDSAVRDLALQTLAEIVEQGRIVTRVAVTVRTSTFYTRTKIRKLPAPSTDAGQIVDTALAVLDQFELDRPVRLL 336 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEeCCCeEEEEEEECCcccCCHHHHHHHHHHHHHhccCCCCEEEE
Confidence 688999999999999999999999999999999999999999999999999999999999999999999986 4789999
Q ss_pred EEEEecCCCCc
Q 011631 238 GLRVTQFNEDK 248 (481)
Q Consensus 238 GV~vs~L~~~~ 248 (481)
||++++|.++.
T Consensus 337 GV~ls~l~d~~ 347 (356)
T 4dez_A 337 GVRLELAMDDV 347 (356)
T ss_dssp -----------
T ss_pred EEEECCCCCCC
Confidence 99999998763
No 8
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=2.3e-47 Score=401.09 Aligned_cols=244 Identities=25% Similarity=0.361 Sum_probs=222.0
Q ss_pred CCccceEEEecCCccc-------------------ccCCC--------------HHHHHHHHHHHHHHHhCCceEEeccC
Q 011631 2 AASLDEAYLDITEVCR-------------------ERGIS--------------GIEIAEELRTSVYEEAGLTCSAGVAP 48 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~-------------------l~g~s--------------~~~iA~~IR~~I~~etGlt~SiGIA~ 48 (481)
+|||||+|||+|++.. +||.. +.++|++||++|++++|||||||||+
T Consensus 122 ~~SiDE~fLDvt~~~~~~l~~~~~~~~~~~~~~g~l~g~~~~~~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~ 201 (420)
T 3osn_A 122 RLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVAS 201 (420)
T ss_dssp EETTTEEEEECHHHHHHHHHHSCSSSGGGCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EecCCEEEEECcccchhhccccccccccccccccccccccccccccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeC
Confidence 5899999999999852 34421 57999999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCcEEEecCChhHHHHhhccCC-CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHH
Q 011631 49 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTA 126 (481)
Q Consensus 49 NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~LP-I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~ 126 (481)
||+|||||++.+||||++++.++ ++.+||+++| |++|||||++++++|++ +||+|+|||++++ ..|+++||...+
T Consensus 202 nk~LAKlAs~~~KP~g~~vl~~~--~~~~~L~~Lppv~~l~GIG~~t~~~L~~-lGI~TigdLa~~~~~~L~~~fG~~~g 278 (420)
T 3osn_A 202 NKLLAKLVSGVFKPNQQTVLLPE--SCQHLIHSLNHIKEIPGIGYKTAKCLEA-LGINSVRDLQTFSPKILEKELGISVA 278 (420)
T ss_dssp SHHHHHHHHTSSCSSCEEECCGG--GHHHHHHHCSSGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhcCCCCeEEecHH--HHHHhhccCccHHHccCCCHHHHHHHHH-hCCCcHHHHhhCCHHHHHHHhCchHH
Confidence 99999999999999999999876 6899999997 99999999999999997 9999999999998 899999999789
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcccccccccCccCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEec----CCeee
Q 011631 127 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA----SFEVR 202 (481)
Q Consensus 127 ~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~~~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~----~f~~~ 202 (481)
.++|.+++|+|.+++.+..++|||+++++|+...+.+++..+|.+|+++|+.||+++++.+++|+|++++. +|...
T Consensus 279 ~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~~~~~~~~~~~~l~~La~~l~~rLr~~~~~~~tv~l~ir~~~~~~~~~~~ 358 (420)
T 3osn_A 279 QRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRE 358 (420)
T ss_dssp HHHHHHHTTCCCCCCCCCCSCSEEEEEEECSSCCCSSSHHHHHHHHHHHHHHHHHHHCSCEEEEEEEEEEECSSCCCCCE
T ss_pred HHHHHHhcCCCccccCCCCCCCceeeeeeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccEEEEEEEeCCCCCCCcee
Confidence 99999999999999988888999999999987777889999999999999999999999999999999953 46778
Q ss_pred EEEEEcCCC---------CCCHHHHHHHHHHHHHhhCC--CC--EEEEEEEEecCCCCc
Q 011631 203 TRAVTLQKY---------ISSSEDILKHASVLLKAELP--VS--LRLIGLRVTQFNEDK 248 (481)
Q Consensus 203 srs~~l~~p---------t~d~~~L~~~a~~LL~~~~~--~~--VR~IGV~vs~L~~~~ 248 (481)
+++.+++.| |++..+|++.|..||+++++ .+ ||+|||++++|.+..
T Consensus 359 sr~~~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~~~~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 359 SRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp EEEEECCTTTCCC-----CTTHHHHHHHHHHHHHHHSCSSSCCEEEEEEEEEEEEC---
T ss_pred EEEEECCCccccccccCCCchHHHHHHHHHHHHHHhhcccCCcceeEEEEEEeCcccCc
Confidence 999999986 78899999999999999973 34 999999999998764
No 9
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=5.2e-45 Score=384.83 Aligned_cols=218 Identities=23% Similarity=0.379 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhccCCCcccCCCCHHHHHH-Hhhcc
Q 011631 24 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHI-LRDVF 102 (481)
Q Consensus 24 ~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~LPI~~LpGIG~kt~~k-L~~~l 102 (481)
..+|++||++|++++|||||||||+||++||||++.+||+|+++++++ ++.+||+++||++|||||++++.+ |++ +
T Consensus 197 ~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~--~~~~~L~~lpv~~l~GiG~~~~~~lL~~-l 273 (435)
T 4ecq_A 197 AVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQMPIRKIRSLGGKLGASVIEI-L 273 (435)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGG--GHHHHHHTCBGGGSTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEehh--HHHHHHhhCCHHHhcCCCHHHHHHHHHH-c
Confidence 368999999999999999999999999999999999999999999886 789999999999999999998766 787 9
Q ss_pred CCCcHHHHHhch-HHHHHHhcHhHHHHHHHHhcCCCCCCCCCCCCCcccccccccCc---cCCHHHHHHHHHHHHHHHHH
Q 011631 103 GINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSA 178 (481)
Q Consensus 103 GI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSIs~e~tF~~---~~d~e~L~~~L~~La~eL~~ 178 (481)
||+|++||++++ ..|+++||...+.++|..|+|+|.+++.+..++|||+++++|+. +.+.+++..+|..|+++|+.
T Consensus 274 GI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~ 353 (435)
T 4ecq_A 274 GIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEE 353 (435)
T ss_dssp TCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998 89999999777899999999999999988888999999999996 47899999999999999999
Q ss_pred HHHHh----CCcccEEEEEEEecC---CeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhCC--------CCEEEEEEEEec
Q 011631 179 DMQKE----GLRGRTLTLKLKTAS---FEVRTRAVTLQKYISSSEDILKHASVLLKAELP--------VSLRLIGLRVTQ 243 (481)
Q Consensus 179 RLr~~----~~~artltL~lr~~~---f~~~srs~~l~~pt~d~~~L~~~a~~LL~~~~~--------~~VR~IGV~vs~ 243 (481)
||+++ ++.+++|+|++++.+ +...+|+.+++. +++..|.+.|..||++++. .+||.|||++++
T Consensus 354 rLr~~~~~~~~~~~~l~v~ir~~~~~~~~~~~R~~~l~~--~~~~~i~~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~ 431 (435)
T 4ecq_A 354 RLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTR--YDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATK 431 (435)
T ss_dssp HHHHHHHHHSEEEEEEEEEEEETTCCSSCSEEEEEECCS--CCHHHHHHHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEE
T ss_pred HHHhhhhhcCceEEEEEEEEEeCCCCCCceeEEeccCCC--CCHHHHHHHHHHHHHHHhhccccccCCCCeeEEEEEEee
Confidence 99997 899999999999976 466788998865 6799999999999999873 479999999999
Q ss_pred CCC
Q 011631 244 FNE 246 (481)
Q Consensus 244 L~~ 246 (481)
|++
T Consensus 432 f~~ 434 (435)
T 4ecq_A 432 FSA 434 (435)
T ss_dssp EEE
T ss_pred ccc
Confidence 975
No 10
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=2.5e-45 Score=394.46 Aligned_cols=223 Identities=19% Similarity=0.239 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhcc--CCCcccCCCCHHHHHHHhh
Q 011631 23 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS--LPIRKIGGIGKVTEHILRD 100 (481)
Q Consensus 23 ~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~~--LPI~~LpGIG~kt~~kL~~ 100 (481)
+.++|++||++|+++||||||||||+||+||||||+.+||||+++|+++ ++.+||++ +||++|||||++++++|++
T Consensus 248 ~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~--~~~~fL~~~~lPV~~l~GIG~~t~~~L~~ 325 (520)
T 3mfi_A 248 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKND--CLLDFLDCGKFEITSFWTLGGVLGKELID 325 (520)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGG--GHHHHHTSSSCCGGGSTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChH--HHHHHhhccCCcHHHhcCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999886 78999998 9999999999999999998
Q ss_pred cc-CC---CcH-----------HHHHhch-HHHHHHhcH------------hHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 011631 101 VF-GI---NTC-----------EEMLQKG-SLLCAVFSH------------STADFFLSVGLGLGSTNTPQARFRKSISS 152 (481)
Q Consensus 101 ~l-GI---~Ti-----------gDL~~~~-~~L~~~fG~------------~~~~~l~~~a~Gid~~~v~~~~~~KSIs~ 152 (481)
+ || +|+ +||+.++ ..|.++||. ..+.++|..|+|+|..++.+.+++|||++
T Consensus 326 -llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~ 404 (520)
T 3mfi_A 326 -VLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMS 404 (520)
T ss_dssp -HTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEE
T ss_pred -hcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceee
Confidence 7 99 665 7787777 789999994 57899999999999999988888999999
Q ss_pred ccccCc--cCCHHHHHHHHHHHHHHHHHHHHHhC------CcccEEEEEEEecCCeeeEEEEEcCCCC--CCHHHHHHHH
Q 011631 153 ERTFSV--TEDKALLYRKLAEIAEMLSADMQKEG------LRGRTLTLKLKTASFEVRTRAVTLQKYI--SSSEDILKHA 222 (481)
Q Consensus 153 e~tF~~--~~d~e~L~~~L~~La~eL~~RLr~~~------~~artltL~lr~~~f~~~srs~~l~~pt--~d~~~L~~~a 222 (481)
+++|+. +.+.+++..+|..|+++|+.||++.+ +.+++|+|++++++|...+++.+++.|| ++..+|+++|
T Consensus 405 ~~tf~~~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df~~~trs~~l~~pt~~~~~~~I~~~a 484 (520)
T 3mfi_A 405 NKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVG 484 (520)
T ss_dssp EEECCTTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTCCEEEEEEECCCCCGGGHHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCCCcceEEEECCCCCccCCHHHHHHHH
Confidence 999996 47999999999999999999999984 9999999999999999999999999999 9999999999
Q ss_pred HHHHHhhC-------CCCEEEEEEEEecCCCCc
Q 011631 223 SVLLKAEL-------PVSLRLIGLRVTQFNEDK 248 (481)
Q Consensus 223 ~~LL~~~~-------~~~VR~IGV~vs~L~~~~ 248 (481)
..||++++ ..+||+|||++++|...+
T Consensus 485 ~~Ll~~~~~~~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 485 IKFVTDLDIKGKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp HHHHHHHHHHTTTSSCSSCSEEEEEEEEEEEEE
T ss_pred HHHHHHHhhhcccccCCceeEEEEEEeCCEecC
Confidence 99999975 268999999999998764
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=2.5e-45 Score=387.09 Aligned_cols=243 Identities=19% Similarity=0.218 Sum_probs=217.2
Q ss_pred CCccceEEEe--cCCcccccCCCHHHHHHHHHHHHHHHh-CCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHH-HH
Q 011631 2 AASLDEAYLD--ITEVCRERGISGIEIAEELRTSVYEEA-GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV-MT 77 (481)
Q Consensus 2 ~~SIDEafLD--iTg~~~l~g~s~~~iA~~IR~~I~~et-Glt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v-~~ 77 (481)
+|||||+||| +|+....++.++.++|++||++|+++| |||||||||+||++||||++.+||||+++++++ ++ .+
T Consensus 159 ~~SiDEaflD~~vt~~~~~~~~~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~--~~~~~ 236 (434)
T 2aq4_A 159 PISIDEAVCVRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKS--NLSEE 236 (434)
T ss_dssp EEETTEEEEEEEECC------CHHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGG--GCCHH
T ss_pred EEcCceeEEcCcCccchhhcCCCHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECCh--hhHHH
Confidence 5899999999 999876642389999999999999999 899999999999999999999999999999875 44 68
Q ss_pred hhccCCCcccCCCCHHHHHHHhhc-cCCCcHHHHHhc-h-HHHHHHhcHhHHHHHHHHhcCCCCCCCC-----CC--CCC
Q 011631 78 FISSLPIRKIGGIGKVTEHILRDV-FGINTCEEMLQK-G-SLLCAVFSHSTADFFLSVGLGLGSTNTP-----QA--RFR 147 (481)
Q Consensus 78 fL~~LPI~~LpGIG~kt~~kL~~~-lGI~TigDL~~~-~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~-----~~--~~~ 147 (481)
||+++||++|||||++++++|++. +||+|++||+++ + ..|.++||...+.++|..|+|+|..++. +. .++
T Consensus 237 ~l~~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ 316 (434)
T 2aq4_A 237 FWSSFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQR 316 (434)
T ss_dssp HHTTCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSC
T ss_pred HhhcCCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCC
Confidence 999999999999999999999942 699999999999 8 8999999976789999999999998874 22 478
Q ss_pred cccccccccCc-cCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEec---------------CCeeeEEEEEcCCC
Q 011631 148 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA---------------SFEVRTRAVTLQKY 211 (481)
Q Consensus 148 KSIs~e~tF~~-~~d~e~L~~~L~~La~eL~~RLr~~~~~artltL~lr~~---------------~f~~~srs~~l~~p 211 (481)
|||+++++|+. +.+.+++..+|..|+++|+.||++.++.+++|+|++++. +|...+++++++.|
T Consensus 317 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~p 396 (434)
T 2aq4_A 317 KSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIP 396 (434)
T ss_dssp CCEEEEECSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCC
Confidence 99999999997 689999999999999999999999999999999999842 35688999999999
Q ss_pred CCCHHHHHHHHHHHHHhhC--CCCEEEEEEEEecCCC
Q 011631 212 ISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE 246 (481)
Q Consensus 212 t~d~~~L~~~a~~LL~~~~--~~~VR~IGV~vs~L~~ 246 (481)
|++...|++.+..+|++++ +.+||+|||++++|.+
T Consensus 397 t~~~~~i~~~a~~ll~~~~~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 397 TNEFGIIATEMKSLYRTLGCPPMELRGLALQFNKLVD 433 (434)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCGGGEEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCEEEEEEEEeCccc
Confidence 9999999999999999986 3789999999999864
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=99.95 E-value=3.9e-29 Score=241.63 Aligned_cols=113 Identities=39% Similarity=0.635 Sum_probs=100.3
Q ss_pred CCccceEEEecCCccc-ccCCCHHHHHHHHHHHHHHHhCCceEEeccCCHHHHHHhhhcCCCCcEEEecCChhHHHHhhc
Q 011631 2 AASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 80 (481)
Q Consensus 2 ~~SIDEafLDiTg~~~-l~g~s~~~iA~~IR~~I~~etGlt~SiGIA~NKlLAKLAS~~aKPnG~~vI~~~~~~v~~fL~ 80 (481)
+|||||+|||+|++.+ +|| ++.++|++||++|++++|+|||+|||+||++||||++.+||||+++++++ ++.+||+
T Consensus 106 ~~siDE~~lDvt~~~~~l~~-~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~--~~~~~L~ 182 (221)
T 1im4_A 106 VASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLN 182 (221)
T ss_dssp EEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGG--GHHHHHH
T ss_pred EecCCeEEEEecchhhhccC-CHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHH--HHHHHHH
Confidence 5899999999999988 888 89999999999999999999999999999999999999999999999875 7899999
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 118 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~ 118 (481)
++||++|||||++++++|++ +||+|++||++++ ..|+
T Consensus 183 ~lpv~~l~giG~~~~~~L~~-~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 183 ELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELE 220 (221)
T ss_dssp TCBGGGSTTCCHHHHHHHHH-TTCCBTTC----------
T ss_pred hCCcccccCCCHHHHHHHHH-cCCCcHHHHHCCCHHHhh
Confidence 99999999999999999997 9999999999987 5553
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.51 E-value=7.1e-14 Score=121.10 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=90.7
Q ss_pred cccccccccCc-cCCHHHHHHHHHHHHHHHHHHHHHhCCcccEEE---EEEEecCCeeeEEEEEcCCCCCCHHHHHHHHH
Q 011631 148 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT---LKLKTASFEVRTRAVTLQKYISSSEDILKHAS 223 (481)
Q Consensus 148 KSIs~e~tF~~-~~d~e~L~~~L~~La~eL~~RLr~~~~~artlt---L~lr~~~f~~~srs~~l~~pt~d~~~L~~~a~ 223 (481)
..+|+|.||+. +.+.+++..+|..|+++|+.||++.+ .+++|+ |++++++|...+++.+ .||++..+|++.|.
T Consensus 5 ~~~g~e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF~~~trs~t--~pt~~~~~i~~~a~ 81 (115)
T 1unn_C 5 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATAR 81 (115)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTSCEEEEEEE--CSBCCHHHHHHHHH
T ss_pred CCCccceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCCCeEEeccc--cCcCCHHHHHHHHH
Confidence 46899999998 58999999999999999999999999 999999 9999999999999988 69999999999999
Q ss_pred HHHHhhCC-CCEEEEEEEEecCCCC
Q 011631 224 VLLKAELP-VSLRLIGLRVTQFNED 247 (481)
Q Consensus 224 ~LL~~~~~-~~VR~IGV~vs~L~~~ 247 (481)
.||++.++ .+||+|||++++|.+.
T Consensus 82 ~Ll~~~~~~~~vRllGV~ls~L~~~ 106 (115)
T 1unn_C 82 KTWDERRGGRGVRLVGLHVTLLDPQ 106 (115)
T ss_dssp HHHHHHCTTCCEEEEEEEEECCCCC
T ss_pred HHHHhhhcCCCEEEEEEEEeCCCCC
Confidence 99998875 7899999999999775
No 14
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=98.85 E-value=2.9e-10 Score=80.06 Aligned_cols=36 Identities=36% Similarity=0.600 Sum_probs=31.2
Q ss_pred ceeecCccccccccCCCCCcHhhhhcccchhHHHHhhhh
Q 011631 388 FIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 426 (481)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (481)
+.|.+.|.|+.||..+|. .++|||.|||+|..||+.
T Consensus 4 ~~~~~~~~C~~C~~~i~~---~~~~EH~D~H~A~~Lq~s 39 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPV---WDMPEHMDYHFALELQKS 39 (39)
T ss_dssp --CCCEEECTTTCCEEEG---GGHHHHHHHHHHHHHTTC
T ss_pred CCcCCCcccccccCcCCc---ccccchhhHHHHHHHhcC
Confidence 567889999999999995 689999999999999973
No 15
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.89 E-value=0.0066 Score=47.85 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=41.4
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhc--HhHHHHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 134 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG--~~~~~~l~~~a~ 134 (481)
|.+|+|||+.++.+|.. .||+|+.+|+..+ ..|..+.| ...++.+...|+
T Consensus 9 l~~L~Gi~~~~~~kL~e-~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAA-RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHSSTTCCHHHHHHHHT-TTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 66788999999999997 8999999999998 78888777 445666666555
No 16
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.90 E-value=0.024 Score=47.13 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.7
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHHHHhch
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 114 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~ 114 (481)
.|++||+||+++++.|.+ .||+|+.||+.+.
T Consensus 5 ~L~dLPNig~~~e~~L~~-~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 479999999999999998 8999999998874
No 17
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.80 E-value=0.025 Score=47.05 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.7
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHHHHhch
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 114 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~ 114 (481)
.|++||+||+++++.|.+ .||+|+.||+...
T Consensus 5 ~L~~LPNiG~~~e~~L~~-vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 589999999999999997 9999999998874
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.60 E-value=0.049 Score=41.75 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=41.8
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhH-HHHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 134 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~-~~~l~~~a~ 134 (481)
+.+|||||++....|-+ .+.++.+|.+.+ .+|.+..|... ++.+|....
T Consensus 6 L~~IpGIG~kr~~~LL~--~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 56899999999999876 666999999988 88999999888 888887654
No 19
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.67 E-value=0.068 Score=43.51 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=42.2
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhH-HHHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 134 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~-~~~l~~~a~ 134 (481)
|.+|||||++....|-+ .+.++.+|...+ .+|..++|... ++.+|....
T Consensus 20 L~~IpGIG~kr~~~LL~--~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp HHTCSSCCHHHHHHHHH--HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 66789999999999876 678999999998 88999999888 888887654
No 20
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=93.22 E-value=0.13 Score=40.82 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=41.3
Q ss_pred hccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHHHH
Q 011631 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 131 (481)
Q Consensus 79 L~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l~~ 131 (481)
+..+||.++ ++..+...-|++ .||+|++||.+.+ ..|. +-||++..+-+..
T Consensus 6 ~l~~~Ie~L-~LS~Ra~NcLkr-agI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHHHHH-TTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 345899999 899999999998 8999999999998 6665 4488876555543
No 21
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=90.47 E-value=0.29 Score=39.41 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred hhccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHHHH
Q 011631 78 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 131 (481)
Q Consensus 78 fL~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l~~ 131 (481)
-+-.+||.+| ++..+...-|++ .||+|++||...+ ..|. +-||++..+-+..
T Consensus 12 ~~l~~~Ie~L-~LS~Ra~NcLk~-agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 12 KVLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp CGGGCBGGGS-CCBHHHHHHHHH-TTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHhcCcHHHh-CCCHHHHHHHHH-hCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 3557899999 899999999998 8999999999987 5555 4588776554443
No 22
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=89.55 E-value=0.59 Score=38.19 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=41.4
Q ss_pred ccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHHHHH
Q 011631 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLSV 132 (481)
Q Consensus 80 ~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l~~~ 132 (481)
-..||.+| ++..+...-|++ .||+|++||...+ ..|. +-||++..+-+...
T Consensus 10 l~~~I~~L-~LSvRa~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLXA-EAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHhhccccCcccHHHHHHH
Confidence 46789999 899999999998 8999999999997 5554 56888766655443
No 23
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=88.89 E-value=0.26 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.1
Q ss_pred hccCCCcccCCCCHHHHHHHhhccCCCcHHHHHh
Q 011631 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 112 (481)
Q Consensus 79 L~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~ 112 (481)
|-.-+|++|||||+.++.+|.+ -|+.+..+|..
T Consensus 15 mgeK~V~evpGIG~~~~~~L~~-~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLEE-RGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHHH-cCccHHHHHHH
Confidence 3356899999999999999998 89999877743
No 24
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=87.89 E-value=0.14 Score=43.98 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=42.8
Q ss_pred ccCCCcccC--CCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhc--HhHHHHHHHHhcC
Q 011631 80 SSLPIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGLG 135 (481)
Q Consensus 80 ~~LPI~~Lp--GIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG--~~~~~~l~~~a~G 135 (481)
.++||.+|+ |||+.+..+|.. .|++|+.+|+..+ ..|..+-| ...++.+...|+-
T Consensus 21 ~~~~I~~L~~~GIg~~~i~kL~e-AG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 21 GPQPISRLEQCGINANDVKKLEE-AGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp SCCCHHHHHHTTCSHHHHHHHHT-TCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCCHHHHHHHHH-cCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 356888888 999999999997 8999999999887 67776555 3456666665543
No 25
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=87.07 E-value=0.42 Score=39.97 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=40.2
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 131 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l~~ 131 (481)
.+||.+| ++..+...-|++ .||+|++||.+.+ ..|. +-||++..+-+..
T Consensus 23 ~~~Ie~L-~LSvRs~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 74 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 74 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHHT-TTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHH
Confidence 3899999 899999999997 8999999999998 5555 4599876555543
No 26
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=84.20 E-value=0.54 Score=36.96 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=35.7
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 131 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~ 131 (481)
...+..|||||++++++|-+.|| ++.++...+ ..|.+. +|...+..+..
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Confidence 44578999999999999887454 788888776 667666 66655555543
No 27
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=84.18 E-value=1.1 Score=35.99 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=37.3
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHHh
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 133 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~a 133 (481)
+..+||||++++.+|-+.+| ++.++...+ ..|... +|...+..++...
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 66899999999999887444 788888876 677777 7877777776544
No 28
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=84.08 E-value=1.1 Score=36.33 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=36.7
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHHh
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 133 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~a 133 (481)
|..|||||++++.+|-+.+| ++.+|...+ ..|.++ +|...+..++...
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 66889999999999886454 788888776 677777 7777777666543
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=83.32 E-value=0.23 Score=48.10 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred ccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHH
Q 011631 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 130 (481)
Q Consensus 80 ~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~ 130 (481)
....|..|||||++++..|.. .|+.++.+|+..+ ..|.+. +|.+.++.++
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~-~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~ 65 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLRE-AGFESVEDVRGADQSALADVSGIGNALAARIK 65 (241)
T ss_dssp ------------------------------------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHhccCCCHHHHHHHH
Confidence 345788999999999999987 6999999997766 677776 6666666554
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.73 E-value=1.2 Score=44.91 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=40.6
Q ss_pred ccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH--hHHHHHHHHh
Q 011631 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH--STADFFLSVG 133 (481)
Q Consensus 80 ~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~--~~~~~l~~~a 133 (481)
...+|.+||||++.+.++|++ .|++|+.+++..+ ..|.+.-|. ..+..+...+
T Consensus 33 ~~~~l~~l~Gi~~~~~~kL~~-ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~ 88 (349)
T 1pzn_A 33 IIRSIEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA 88 (349)
T ss_dssp --CCSSCCTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccccHHHcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHH
Confidence 345899999999999999997 8999999999887 778777663 2344444443
No 31
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=81.01 E-value=1.3 Score=42.11 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH-hHHHHHHHH
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH-STADFFLSV 132 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~-~~~~~l~~~ 132 (481)
-++..|||||+++++.|.+.|| ++..|.+.+ .+|.+.+|. ..++.++..
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 4688999999999999987555 888898887 778888998 888877653
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.38 E-value=1.1 Score=48.86 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHhHHHHHHH
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLS 131 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~ 131 (481)
+|+..|||||+..+++|.+ .|++|+.||+ .+ ..|.+.+|.+.+..++.
T Consensus 657 ~~L~qlp~i~~~rar~L~~-~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYN-NGIKELGDVV-MNPDKVKNLLGQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHH-TTCCSHHHHH-HCHHHHHHHHCHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHH-cCCCCHHHHh-CCHHHHHHHhChhHHHHHHH
Confidence 6788999999999999997 8999999999 76 78888888766666655
No 33
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=80.02 E-value=2.2 Score=34.44 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.8
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHh
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 124 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~ 124 (481)
.+.++..||+...+.++|++ -||+|+.|+...+ .+|.++.|..
T Consensus 3 ~l~~~~~p~Lse~~~~~L~~-~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 3 VLRVGLCPGLTEEMIQLLRS-HRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCTTSSTTCCHHHHHHHHH-TTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHhCCC
Confidence 45677779999999999997 8999999999987 6788887754
No 34
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=78.72 E-value=3.7 Score=41.02 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=44.4
Q ss_pred HHHhhcc--CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhc--HhHHHHHHHHhcC
Q 011631 75 VMTFISS--LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGLG 135 (481)
Q Consensus 75 v~~fL~~--LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG--~~~~~~l~~~a~G 135 (481)
+..-+|+ .|+..|||||+..+++|.+ .||.|+.||..++ ..+...+| ...+..+...+.-
T Consensus 152 i~q~~w~~~~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 152 VTQAMWSKDSYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp HHHTCCTTSCGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred HHHhcCCCCCceecCCCCCHHHHHHHHh-cCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334443 6899999999999999997 8999999999987 66666666 3334555555444
No 35
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.58 E-value=1.3 Score=43.59 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=38.6
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH--hHHHHHHHHhc
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH--STADFFLSVGL 134 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~--~~~~~l~~~a~ 134 (481)
.+|.+|+||++.++.+|++ .||+|+.|++..+ ..|...-|. ..+..+...|+
T Consensus 3 ~~~~~l~gi~~~~~~kL~~-~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE-AGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH-HTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHH
Confidence 3688999999999999997 8999999999987 677766553 23344444444
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=77.90 E-value=1.8 Score=47.36 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=44.7
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhchHHHHHHhcHhHHHHHHHHhc
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 134 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~ 134 (481)
+|+..|||||+..+++|.+ .|++|+.||+..+..|.+.+|.+.++.+...+.
T Consensus 632 ~~L~qlp~v~~~~ar~l~~-~g~~s~~~l~~~~~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYN-AGIRNAEDIVRHREKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHT-TTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHH-cCCCCHHHHHhhhHHHHHHhChhHHHHHHHhcC
Confidence 6788999999999999997 899999999988877788888777777776655
No 37
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=76.80 E-value=1.3 Score=44.59 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=26.3
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
+..|||||++++++|.+ -||+|+.||...
T Consensus 100 l~~V~GiGpk~a~~l~~-~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVD-EGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHHh
Confidence 67899999999999998 599999999863
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.59 E-value=2.5 Score=46.28 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=42.4
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHHhc
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 134 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~a~ 134 (481)
.+|+..|||||+..+++|.+ .|++|+.||+..+ ..+... +|....+.+...+.
T Consensus 645 ~~~L~qlp~v~~~rar~L~~-~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALYN-SGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred chhhhhCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 47899999999999999997 8999999999987 666655 67665555544444
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.73 E-value=0.94 Score=50.78 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
.||..|+|||++++++|++ +||.|++||+..
T Consensus 115 ~~~~~l~gvg~~~~~~l~~-lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKK-LGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHT-TTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHHH-CCCCcHHHHHhh
Confidence 3899999999999999997 999999999663
No 40
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=74.30 E-value=1.8 Score=43.62 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=25.2
Q ss_pred cccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 85 RKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 85 ~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
..|||||++++++|.. .||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~~-~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQ-QGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 5899999999999998 599999999763
No 41
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=74.21 E-value=2 Score=32.72 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHH
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 132 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~ 132 (481)
.+..+||||++++..|-. .+.++.+|...+ ..|..+ +|...+..++..
T Consensus 15 ~L~~i~giG~~~a~~Ll~--~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLK--HFGSVERVFTASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHTTSTTCCHHHHHHHHH--HHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHH--HcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHH
Confidence 367899999999999986 345688887766 667666 677666666554
No 42
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=73.85 E-value=2.8 Score=41.67 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=41.3
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH--hHHHHHHHHhcC
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH--STADFFLSVGLG 135 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~--~~~~~l~~~a~G 135 (481)
.|+..|||||+..+++|.+ .||.|+.||+.++ ..+...+|. ..+..++..+..
T Consensus 157 ~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCKE-INVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHHh-CCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 6899999999999999997 8999999999987 666666553 345555555444
No 43
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=73.32 E-value=1.6 Score=44.40 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHHHHh
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ 112 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigDL~~ 112 (481)
.+..|||||++++++|.+ -||+|+.||..
T Consensus 103 ~l~~I~GvG~kta~~l~~-~Gi~tledL~~ 131 (360)
T 2ihm_A 103 LFTQVFGVGVKTANRWYQ-EGLRTLDELRE 131 (360)
T ss_dssp HHHTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HHhCCCCCCHHHHHHHHH-cCCCCHHHHHh
Confidence 367899999999999998 59999999974
No 44
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=71.43 E-value=1.9 Score=44.25 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHHHHh
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ 112 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigDL~~ 112 (481)
.+..|||||++++++|.+ -||+|+.||..
T Consensus 122 ~l~~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 356899999999999998 59999999984
No 45
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=69.13 E-value=0.98 Score=44.69 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH 123 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~ 123 (481)
..||.+||||++.+..+|++ .|++|+.+++..+ ..|.+..|.
T Consensus 11 ~~~~~~l~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 11 IKTINDLPGISQTVINKLIE-AGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp --------------------------------------------
T ss_pred CccHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHhhCC
Confidence 34899999999999999997 8999999999876 566665554
No 46
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=58.91 E-value=3.9 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=23.2
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
+..|||||+++++++-+..++.++.||...
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 566899999999998874567777777654
No 47
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=58.04 E-value=6.7 Score=40.29 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=38.2
Q ss_pred hhccCCCcccCC--CCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcHh
Q 011631 78 FISSLPIRKIGG--IGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 124 (481)
Q Consensus 78 fL~~LPI~~LpG--IG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~~ 124 (481)
.-..+||.+|.+ |++.+.++|++ .|++|+.+++..+ ..|.+..|..
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~-ag~~tv~~~~~~~~~~L~~~~gis 125 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRE-SGLHTAEAVAYAPRKDLLEIKGIS 125 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCC
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHHhCCC
Confidence 345688999986 77999999997 8999999999887 7888777753
No 48
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=55.67 E-value=7.7 Score=36.09 Aligned_cols=108 Identities=9% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEeccCC---HHHHHHhhhcCCCC--cEEEecC-ChhHHHHhhccCCCcccCCCCHHH
Q 011631 21 ISGIEIAEELRTSVYEEAGLTCSAGVAPN---RLLAKVCSDINKPN--GQFVLPN-DRMAVMTFISSLPIRKIGGIGKVT 94 (481)
Q Consensus 21 ~s~~~iA~~IR~~I~~etGlt~SiGIA~N---KlLAKLAS~~aKPn--G~~vI~~-~~~~v~~fL~~LPI~~LpGIG~kt 94 (481)
..+..+...|-.-. -..|+++=.--++. .+++.++....+|. ++.+... ......+.+.. -+..|||||+++
T Consensus 97 ~~~~~i~~~l~~~~-~~~~~~vi~t~s~~eta~~l~~l~~~~~~~~~~ai~~~~~~~~~~~~~~~~~-~L~~i~gVg~~~ 174 (219)
T 2bgw_A 97 GRERSLYAAMAALQ-LDYGIRLMNTMDPKGTALVIESLARLSTREGGQRIVIHKKPRLSDVREWQLY-ILQSFPGIGRRT 174 (219)
T ss_dssp TTHHHHHHHHHHHH-HHSCCEEEEESSHHHHHHHHHHHHHHHSCBCCTTCCCCCCCCCCHHHHHHHH-HHHTSTTCCHHH
T ss_pred CCHHHHHHHHHHHH-HHCCceEEEcCCHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH-HHhcCCCCCHHH
Confidence 34666655554333 34466554433322 25555665544432 2211111 00122222221 156899999999
Q ss_pred HHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHH
Q 011631 95 EHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 132 (481)
Q Consensus 95 ~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~ 132 (481)
+..|-+. ..++.+|...+ ..|... +|...++.++..
T Consensus 175 a~~Ll~~--fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 175 AERILER--FGSLERFFTASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHH--HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHH--cCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 9999873 45688888776 678777 777777777654
No 49
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=54.82 E-value=2.6 Score=40.32 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH-hcHhHHHHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV-FSHSTADFFL 130 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~-fG~~~~~~l~ 130 (481)
..++..|||||++++++|-+ ...++..|.+.+ ..|.+. +|...++.++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~--~FGSl~~i~~As~eeL~~VGIG~~~A~~I~ 221 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLN--YFGSVKKMKEATVEELQRANIPRAVAEKIY 221 (226)
T ss_dssp ----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHH--HhCCHHHHHhCCHHHHHHcCCCHHHHHHHH
Confidence 35789999999999999986 455677777766 667777 4554455444
No 50
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=47.58 E-value=21 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHH--hcHhHHHHHHHH
Q 011631 88 GGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 132 (481)
Q Consensus 88 pGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~--fG~~~~~~l~~~ 132 (481)
.||+...+.+|.. -|++|+.+++..+ ..|..+ |....++.+...
T Consensus 12 lgI~e~~a~~L~~-~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 12 LDIDEDFATVLVE-EGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp HTCCHHHHHHHHH-TTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHH
Confidence 4999999999997 8999999999987 666554 333344444433
No 51
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=45.61 E-value=11 Score=40.61 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.8
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
+..|||||++++.+|-. -||.|+.||.+.
T Consensus 99 L~~v~GVGpk~A~~i~~-~G~~s~edL~~a 127 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL-AGIDSLERLREA 127 (578)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 67899999999999987 599999999873
No 52
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=45.30 E-value=5.5 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.999 Sum_probs=13.9
Q ss_pred CcceeecCccccccccCC
Q 011631 386 DQFIWLDDYKCSLCGTEM 403 (481)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~ 403 (481)
..++| .||+|..||.-.
T Consensus 21 ~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 21 QKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SSEEC-SEEECTTTTCCB
T ss_pred ccccc-cCCEeCCCCCeE
Confidence 45789 999999999653
No 53
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=42.71 E-value=14 Score=40.54 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=37.3
Q ss_pred ccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHH--HhcHhHHHHHH
Q 011631 80 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 130 (481)
Q Consensus 80 ~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~--~fG~~~~~~l~ 130 (481)
.....=+|+|+|++++++|-...+|+++.||..+. ..|.. .||.+.++.++
T Consensus 439 ~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl 492 (667)
T 1dgs_A 439 ASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLL 492 (667)
T ss_dssp HSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHH
T ss_pred hcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHH
Confidence 34455689999999999998766789999998876 55543 47765444443
No 54
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=42.04 E-value=5.4 Score=39.76 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred cC-CCcccC--CCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhcH
Q 011631 81 SL-PIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH 123 (481)
Q Consensus 81 ~L-PI~~Lp--GIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG~ 123 (481)
++ ||..|+ ||+..+..+|++ .|++|+.+++..+ ..|.+..|.
T Consensus 23 ~~~~~~~l~~~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~~i 68 (343)
T 1v5w_A 23 LFQDIDLLQKHGINVADIKKLKS-VGICTIKGIQMTTRRALCNVKGL 68 (343)
T ss_dssp -----------------------------------------------
T ss_pred ccCcHHHHhhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhCC
Confidence 45 899998 999999999997 8999999999876 566665553
No 55
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=42.03 E-value=13 Score=34.29 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHH-HHhch-HHHHHH--hcHhHHHHHHHHhcC
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLSVGLG 135 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigD-L~~~~-~~L~~~--fG~~~~~~l~~~a~G 135 (481)
-+..++|||++++..|-..+|-.++-+ +...+ ..|.+. .|++.++.++.-..+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 456799999999988876577555443 33334 677777 778888877654443
No 56
>2od8_B DNA ligase I, mitochondrial precursor; homotrimer, PCNA-peptide complex, PCNA, protein binding; HET: DNA; 2.80A {Saccharomyces cerevisiae}
Probab=41.53 E-value=9.6 Score=23.34 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.5
Q ss_pred CCcccchHHHHhccCccCc
Q 011631 253 SDPTQKTLTNFMTSGHASK 271 (481)
Q Consensus 253 ~~~~q~si~~Ff~s~~~~~ 271 (481)
+.+.|.+|.+||++.+++-
T Consensus 3 kkpkqatlarfftsmknkp 21 (26)
T 2od8_B 3 KKPKQATLARFFTSMKNKP 21 (26)
T ss_pred CChhHhHHHHHHHHhccCC
Confidence 4678999999999988543
No 57
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=40.74 E-value=19 Score=39.63 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=39.4
Q ss_pred hccCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHH--HhcHhHHHHHH
Q 011631 79 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 130 (481)
Q Consensus 79 L~~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~--~fG~~~~~~l~ 130 (481)
+.....=+|+|+|+++.+.|....+|+++.||..+. ..|.. .||.+.++.|+
T Consensus 443 f~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 443 FVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVV 497 (671)
T ss_dssp HHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHH
T ss_pred HhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHH
Confidence 334567789999999999998855689999998886 55554 58877666554
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=40.07 E-value=13 Score=45.37 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=35.0
Q ss_pred CCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHHHHhc
Q 011631 82 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 122 (481)
Q Consensus 82 LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~~~fG 122 (481)
.|+..|||||+..+++|.. .||+|+.||+.++ ..+...++
T Consensus 1557 ~~L~qip~i~~~~ar~l~~-~gi~t~~dl~~~~~~~~~~ll~ 1597 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQ 1597 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHHH-HTCCSHHHHHSSCHHHHTTSSC
T ss_pred cCEecCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHHC
Confidence 6899999999999999997 8999999999987 56665554
No 59
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=38.66 E-value=10 Score=35.81 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.7
Q ss_pred CcccCCCCHHHHHHHh
Q 011631 84 IRKIGGIGKVTEHILR 99 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~ 99 (481)
+++|||||+|++++|.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 6889999999999996
No 60
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=36.72 E-value=17 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=25.0
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhc
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 113 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~ 113 (481)
+..+||||++++..+-..+|+.|+.||...
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a 124 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAA 124 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 567899999999987554799999999763
No 61
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=35.09 E-value=16 Score=34.01 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.2
Q ss_pred CCcccCCCCHHHHHHHhhccCCCcHHH-HHhch-HHHHHH--hcHhHHHHHHHH
Q 011631 83 PIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLSV 132 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lGI~TigD-L~~~~-~~L~~~--fG~~~~~~l~~~ 132 (481)
-+..++|||++++..|-..+|..++-+ +...+ ..|.+. .|++.++.++.-
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 356699999999988876577544443 34444 677777 777777776543
No 62
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.21 E-value=8.1 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=14.5
Q ss_pred CccccccccCCCCCcHhhhhcccchhH
Q 011631 393 DYKCSLCGTEMPPSFIEERQEHSDFHL 419 (481)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (481)
-|+|..||....-. ..-..|...|.
T Consensus 2 ~~~C~~C~k~f~~~--~~l~~H~~~H~ 26 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA--SSLIAHVRQHT 26 (29)
Confidence 38999999865422 22334544443
No 63
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.46 E-value=13 Score=21.10 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.8
Q ss_pred ccccccccCCCC
Q 011631 394 YKCSLCGTEMPP 405 (481)
Q Consensus 394 ~~~~~~~~~~~~ 405 (481)
|+|..||.....
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 899999987653
No 64
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=33.43 E-value=14 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.6
Q ss_pred CcccCCCCHHHHHHHh
Q 011631 84 IRKIGGIGKVTEHILR 99 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~ 99 (481)
+++|||||+|++++|.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 6788999999999996
No 65
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=32.75 E-value=16 Score=30.11 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=24.4
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 114 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~ 114 (481)
+..|||||+++++++-..-++.++.||...+
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V~ 58 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 58 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGCT
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhcc
Confidence 6778999999998887623578888887753
No 66
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.85 E-value=8.6 Score=31.93 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=16.8
Q ss_pred CccccccccCCCCCcHhhhhcc
Q 011631 393 DYKCSLCGTEMPPSFIEERQEH 414 (481)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~ 414 (481)
|-.|.+||-++.|.+..+..++
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~ 68 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSK 68 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHH
Confidence 6789999999998665554443
No 67
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=31.05 E-value=21 Score=31.29 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=25.2
Q ss_pred CcccCCCCHHHHHHHhhccCCCcHHHHHhch
Q 011631 84 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 114 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~lGI~TigDL~~~~ 114 (481)
+..|||||++.++++-+.-...++.||.+.+
T Consensus 65 L~~LpGiGp~~A~~II~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 95 (134)
T ss_dssp GGGSTTCTHHHHHHHHHTCCCSSGGGGGGCT
T ss_pred HHHCCCCCHHHHHHHHHcCCCCCHHHHHhCC
Confidence 5578999999999987623589999998875
No 68
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.59 E-value=12 Score=21.48 Aligned_cols=12 Identities=42% Similarity=1.201 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|+.||....
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 69
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.04 E-value=13 Score=21.32 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 489999998654
No 70
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.91 E-value=19 Score=27.81 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=12.6
Q ss_pred CccccccccCCCCC
Q 011631 393 DYKCSLCGTEMPPS 406 (481)
Q Consensus 393 ~~~~~~~~~~~~~~ 406 (481)
-.+|+-||.+++|+
T Consensus 4 ~~~C~Fcg~~IyPG 17 (66)
T 3j21_V 4 WNVCSYCGKPFEPG 17 (66)
T ss_dssp CCBCTTTCSBCCTT
T ss_pred eeEecCcCCcccCC
Confidence 36899999999998
No 71
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=28.82 E-value=28 Score=34.81 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=31.0
Q ss_pred CcccCCCCHHHHHHHhhcc---C-CCcHHHHHhchH---HHHHHh--cHhHHHHHHHHhcCCCC
Q 011631 84 IRKIGGIGKVTEHILRDVF---G-INTCEEMLQKGS---LLCAVF--SHSTADFFLSVGLGLGS 138 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~l---G-I~TigDL~~~~~---~L~~~f--G~~~~~~l~~~a~Gid~ 138 (481)
+..|||||+++++++.+ + | +..+.+|...-+ .|.++. |.+.+..+|.. |+..
T Consensus 59 l~~lpGIG~~~A~kI~E-~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~--Gi~t 119 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIE-ILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ--GFRS 119 (335)
T ss_dssp HHTSTTCCHHHHHHHHH-HHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCccHHHHHHHHH-HHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc--CCCC
Confidence 67899999999999876 4 2 333344422112 222333 45677777763 7654
No 72
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=28.24 E-value=28 Score=28.15 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=20.8
Q ss_pred CcccCCCCHHHHHHHhhcc----CCCcHHHHHhch
Q 011631 84 IRKIGGIGKVTEHILRDVF----GINTCEEMLQKG 114 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~l----GI~TigDL~~~~ 114 (481)
+..|||||+++++++-+.. .+.++.||..++
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~ 76 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVE 76 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGST
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCC
Confidence 5678899998888776522 356666765543
No 73
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.85 E-value=17 Score=20.84 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 389999998654
No 74
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=27.84 E-value=33 Score=37.09 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=35.8
Q ss_pred CCcccCCCCHHHHHHHhhccC-CCcHHHHHhch-HHHHH--HhcHhHHHHHH
Q 011631 83 PIRKIGGIGKVTEHILRDVFG-INTCEEMLQKG-SLLCA--VFSHSTADFFL 130 (481)
Q Consensus 83 PI~~LpGIG~kt~~kL~~~lG-I~TigDL~~~~-~~L~~--~fG~~~~~~l~ 130 (481)
.-=+|.|+|.++.++|-. .| |+++.||..+. ..|.. .||.+.++.|+
T Consensus 447 ~amdI~GlG~~~i~~L~~-~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~ 497 (586)
T 4glx_A 447 RAMDVDGMGDKIIDQLVE-KEYVHTPADLFKLTAGKLTGLERMGPKSAQNVV 497 (586)
T ss_dssp TTTCCTTCCHHHHHHHHH-TTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHh-cCCCCCHHHHhCCCHHHHhcccCccHHHHHHHH
Confidence 344678999999999997 67 59999999887 55654 57877665553
No 75
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.32 E-value=19 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.3
Q ss_pred CccccccccCCCC
Q 011631 393 DYKCSLCGTEMPP 405 (481)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (481)
-|+|..||.....
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3899999987654
No 76
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.93 E-value=20 Score=20.70 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1paa_A 2 AYACGLCNRAFT 13 (30)
T ss_dssp CSBCTTTCCBCS
T ss_pred CcCCcccCcccC
Confidence 489999998754
No 77
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.89 E-value=14 Score=21.26 Aligned_cols=12 Identities=42% Similarity=1.184 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999998654
No 78
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.87 E-value=13 Score=20.97 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 389999997654
No 79
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.80 E-value=15 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 489999998654
No 80
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.78 E-value=17 Score=26.86 Aligned_cols=10 Identities=60% Similarity=1.524 Sum_probs=5.4
Q ss_pred cCcccccccc
Q 011631 392 DDYKCSLCGT 401 (481)
Q Consensus 392 ~~~~~~~~~~ 401 (481)
++++|..||.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4455555554
No 81
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.69 E-value=14 Score=21.45 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.8
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 489999998654
No 82
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.59 E-value=21 Score=20.22 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred CccccccccCCCC
Q 011631 393 DYKCSLCGTEMPP 405 (481)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (481)
-|+|..||.....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3899999987654
No 83
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.24 E-value=21 Score=21.84 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.9
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 499999998664
No 84
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.58 E-value=18 Score=21.91 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
.|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 499999998654
No 85
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=24.43 E-value=58 Score=30.46 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=28.8
Q ss_pred CcccCCCCHHHHHHHhhcc----CCCcHHHHHh-ch--HHHHHHhcHhHHH
Q 011631 84 IRKIGGIGKVTEHILRDVF----GINTCEEMLQ-KG--SLLCAVFSHSTAD 127 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~l----GI~TigDL~~-~~--~~L~~~fG~~~~~ 127 (481)
|..|||||+++++.+-. + .+.++.||.+ .. ..-.+++|....+
T Consensus 134 L~~LpGIG~k~A~~IIe-yRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le 183 (205)
T 2i5h_A 134 LELLPGVGKKMMWAIIE-ERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIY 183 (205)
T ss_dssp GGGSTTCCHHHHHHHHH-HHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHH-HHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHH
Confidence 56799999999887654 3 6889999965 43 2224455554433
No 86
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=24.01 E-value=35 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=28.2
Q ss_pred ccceEEEecCCcccccCCCHHHHHHHHHHHHHHH--------hCCceEEeccC
Q 011631 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEE--------AGLTCSAGVAP 48 (481)
Q Consensus 4 SIDEafLDiTg~~~l~g~s~~~iA~~IR~~I~~e--------tGlt~SiGIA~ 48 (481)
+=||+.+=+.+... ..+..++++|++.|... +.+|+|+||+.
T Consensus 81 gGDEF~ill~~~~~---~~~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 81 GGEEFIIIVKAAND---EEACRAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp SSSEEEEEEEESSH---HHHHHHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred cCCEEEEEcCCCCH---HHHHHHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 44777665544322 14567899999998542 35899999983
No 87
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=23.81 E-value=26 Score=26.97 Aligned_cols=13 Identities=38% Similarity=1.145 Sum_probs=12.2
Q ss_pred ccccccccCCCCC
Q 011631 394 YKCSLCGTEMPPS 406 (481)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (481)
.+|+-||.+++|+
T Consensus 4 ~~C~Fcg~~IyPG 16 (66)
T 1vq8_U 4 RECDYCGTDIEPG 16 (66)
T ss_dssp CBCTTTCCBCCSS
T ss_pred eEecCcCCcccCC
Confidence 6899999999998
No 88
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.58 E-value=19 Score=20.58 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||...+
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 89
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.28 E-value=20 Score=21.85 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 499999998653
No 90
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.26 E-value=20 Score=22.50 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elm_A 9 LYYCSQCHYSSI 20 (37)
T ss_dssp EEECSSSSCEEE
T ss_pred CeECCCCCcccC
Confidence 499999998643
No 91
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=23.11 E-value=91 Score=31.36 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=34.1
Q ss_pred CcccCCCCHHHHHHHhhcc----CCCcHHHHHh--ch---HHHHHHhc--HhHHHHHHHHhcCCCC
Q 011631 84 IRKIGGIGKVTEHILRDVF----GINTCEEMLQ--KG---SLLCAVFS--HSTADFFLSVGLGLGS 138 (481)
Q Consensus 84 I~~LpGIG~kt~~kL~~~l----GI~TigDL~~--~~---~~L~~~fG--~~~~~~l~~~a~Gid~ 138 (481)
+..|||||+++++++.+ + -+..+.+|.. .+ ..|.+++| .+.+..||.. |+..
T Consensus 63 l~~lpGIG~~~A~kI~E-~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~t 125 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQE-LLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRT 125 (360)
T ss_dssp GTTCTTCCHHHHHHHHH-HHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCCHHHHHHHHH-HHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCC
Confidence 78999999999999876 4 3445555543 22 24555555 4567777763 7654
No 92
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.84 E-value=20 Score=22.02 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 499999997543
No 93
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.74 E-value=21 Score=21.99 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.3
Q ss_pred CccccccccCCCC
Q 011631 393 DYKCSLCGTEMPP 405 (481)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (481)
-|+|..||.....
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4899999987543
No 94
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.69 E-value=21 Score=20.44 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 389999998654
No 95
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.65 E-value=22 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.850 Sum_probs=8.2
Q ss_pred CccccccccC
Q 011631 393 DYKCSLCGTE 402 (481)
Q Consensus 393 ~~~~~~~~~~ 402 (481)
-|+|..||..
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 3899999974
No 96
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=21 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 599999998654
No 97
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=22.35 E-value=18 Score=36.01 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=0.0
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFF 129 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l 129 (481)
.+||.+| .+.-+...-|++ .||+|+|||.+.. ..|. +.||++..+-+
T Consensus 253 ~~~i~~L-~LsvRs~NcLk~-a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei 302 (315)
T 2a6h_A 253 DLPLEEL-GLSTRVLHSLKE-EGIESVRALLALNLKDLKNIPGIGERSLEEI 302 (315)
T ss_dssp ----------------------------------------------------
T ss_pred cCcHHHc-cCcHHHHHHHHH-cCCcCHHHHhhCCHHHHhcCCCCCcchHHHH
Confidence 4899999 789999999997 8999999999987 4433 66887654433
No 98
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=21.42 E-value=26 Score=38.54 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=9.8
Q ss_pred ecCccccccccCC
Q 011631 391 LDDYKCSLCGTEM 403 (481)
Q Consensus 391 ~~~~~~~~~~~~~ 403 (481)
..||||+|||.-+
T Consensus 265 ~~g~kc~lcGE~~ 277 (693)
T 3ung_C 265 LKGWKCHVCGENL 277 (693)
T ss_dssp --CCBCSSSSSSB
T ss_pred cCCceeeccCccc
Confidence 4799999999764
No 99
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=23 Score=21.90 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 499999998654
No 100
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=21.11 E-value=20 Score=35.97 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred cCCCcccCCCCHHHHHHHhhccCCCcHHHHHhch-HHHH--HHhcHhHHHHH
Q 011631 81 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFF 129 (481)
Q Consensus 81 ~LPI~~LpGIG~kt~~kL~~~lGI~TigDL~~~~-~~L~--~~fG~~~~~~l 129 (481)
.+||.+| .+.-+...-|++ .||+|+|||.+.+ ..|. +.||++..+-+
T Consensus 254 ~~~I~eL-eLsvRs~NCLKr-a~I~tv~dL~~~se~dLlki~n~G~kSl~EI 303 (329)
T 3lu0_A 254 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 (329)
T ss_dssp ----------------------------------------------------
T ss_pred hhhHHhh-cCCHHHHHHHHH-cCCcCHHHHhhCCHHHHhhCcCCChhhHHHH
Confidence 4579999 789999999997 8999999999987 4443 56887654433
No 101
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.59 E-value=26 Score=21.34 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 2 p~~C~~C~k~F~ 13 (33)
T 1rim_A 2 KFACPECPKRFM 13 (33)
T ss_dssp CCCCSSSCCCCS
T ss_pred cccCCCCCchhC
Confidence 389999998654
No 102
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.53 E-value=26 Score=21.54 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 011631 393 DYKCSLCGTEMP 404 (481)
Q Consensus 393 ~~~~~~~~~~~~ 404 (481)
-|+|..||....
T Consensus 11 ~~~C~~C~k~f~ 22 (37)
T 1p7a_A 11 PFQCPDCDRSFS 22 (37)
T ss_dssp SBCCTTTCCCBS
T ss_pred CccCCCCCcccC
Confidence 499999997553
No 103
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=20.51 E-value=57 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred ccceEEEecCCcccccCCCHHHHHHHHHHHHHHHhCCceEEecc
Q 011631 4 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVA 47 (481)
Q Consensus 4 SIDEafLDiTg~~~l~g~s~~~iA~~IR~~I~~etGlt~SiGIA 47 (481)
.||+.-.. .++..++-.+|...|++||++|++.+|..+.|=|.
T Consensus 110 GID~SN~~-~~~v~LlP~dPd~sA~~I~~~l~~~~G~~v~ViI~ 152 (254)
T 2phn_A 110 GIDASNVE-EGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIIT 152 (254)
T ss_dssp GCBCSSSC-TTEEECCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred cccccCCC-CCeEEECCcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45655553 34455566689999999999999999988777666
Done!