Query 011632
Match_columns 481
No_of_seqs 186 out of 1197
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1.4E-29 3E-34 270.1 22.5 365 72-464 43-453 (472)
2 KOG1338 Uncharacterized conser 100.0 3.8E-28 8.2E-33 241.1 20.2 257 76-344 7-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 1.2E-18 2.5E-23 153.4 14.1 122 326-450 1-128 (128)
4 PF00856 SET: SET domain; Int 99.4 4.2E-13 9.2E-18 120.2 8.6 48 249-297 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.3 0.00023 5.1E-09 60.2 3.9 43 253-296 70-116 (116)
6 KOG2589 Histone tail methylase 91.7 0.17 3.7E-06 51.6 3.7 55 251-317 192-247 (453)
7 KOG1085 Predicted methyltransf 89.8 0.32 6.9E-06 48.1 3.6 47 260-306 336-386 (392)
8 KOG1079 Transcriptional repres 83.9 0.95 2E-05 49.7 3.4 38 260-297 668-709 (739)
9 smart00317 SET SET (Su(var)3-9 71.8 4.1 8.9E-05 33.8 3.2 27 112-138 13-39 (116)
10 KOG1080 Histone H3 (Lys4) meth 67.5 5.6 0.00012 46.6 4.0 38 260-297 942-983 (1005)
11 KOG2461 Transcription factor B 54.4 12 0.00025 39.6 3.3 36 274-309 120-155 (396)
12 KOG4442 Clathrin coat binding 53.0 15 0.00033 40.9 3.9 38 260-297 196-237 (729)
13 COG2940 Proteins containing SE 52.4 7.9 0.00017 41.9 1.7 38 261-298 409-450 (480)
14 KOG1083 Putative transcription 38.4 33 0.00071 40.2 3.8 34 266-299 1261-1296(1306)
15 TIGR02059 swm_rep_I cyanobacte 29.1 79 0.0017 26.7 3.7 27 273-299 72-98 (101)
16 KOG3429 Predicted peptidyl-tRN 27.5 2.1E+02 0.0045 26.5 6.4 52 397-453 111-163 (172)
17 PF08666 SAF: SAF domain; Int 26.8 39 0.00085 25.0 1.5 14 112-125 3-16 (63)
18 PF10281 Ish1: Putative stress 23.0 76 0.0017 21.5 2.2 16 78-93 6-21 (38)
19 COG2086 FixA Electron transfer 22.0 67 0.0014 32.0 2.4 76 59-144 111-187 (260)
20 KOG1338 Uncharacterized conser 20.1 12 0.00025 39.1 -3.3 71 250-322 269-343 (466)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=270.09 Aligned_cols=365 Identities=33% Similarity=0.432 Sum_probs=272.7
Q ss_pred cccccchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCCeeEEEEccCCCCCCeEEEcCccCccChhcccCcchHHhhhcc
Q 011632 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT 151 (481)
Q Consensus 72 ~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~~~~ll~~ 151 (481)
....+..+.+..|.+.+|....+..+ .... -.+ +++.+..++..++.+..+|....+..+.....
T Consensus 43 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (472)
T KOG1337|consen 43 IASSENIKSLKFWLTGNGLSSSKSSL-PGND--IDE---WPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYN--------- 107 (472)
T ss_pred CCCccccccceeccccCCcchhhhcc-cccc--ccc---cchhhhhhhhhhhhhccCCchhhhccccccCc---------
Confidence 34556777888888888887654333 1111 112 24666677777776666666665554443221
Q ss_pred CCCChh-HHHHHHHHHHhhcCCCCCchhhHHhcccccCCCccccccCcccCHhHHhhccCCCcHHHHHHHHHHHHHHHHH
Q 011632 152 NKLSEL-ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE 230 (481)
Q Consensus 152 ~~l~~~-~~Lal~Ll~Er~~g~~S~w~pYi~~LP~~~~~g~l~~~~Pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~y~~ 230 (481)
+.. ..+++++++|...+..|.|+||+..||. .+++|++|..+++..|.+++....+..+...++..|.+
T Consensus 108 ---~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (472)
T KOG1337|consen 108 ---DLLPIALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAE 177 (472)
T ss_pred ---cccHHHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHH
Confidence 122 7899999999998888999999999999 57999999999999999999999999988888775544
Q ss_pred HHHH----------------------Hhhcc---cccccccc--------cCceeEeeecccccCCCCCC-ceeEEeeCC
Q 011632 231 LDTV----------------------WFMAG---SLFQKVSL--------ARRFALVPLGPPLLAYSSKC-KAMLAAVDD 276 (481)
Q Consensus 231 l~~~----------------------w~~a~---s~f~~v~~--------~~~~~LvPl~Dml~NH~~~~-~~~~~~~~~ 276 (481)
+... |.++. ..|..... ....+|+|++|| .||++.. ...++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~-~NH~~~~~~~~~~~~d~ 256 (472)
T KOG1337|consen 178 LLEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDL-LNHSPEVIKAGYNQEDE 256 (472)
T ss_pred HHHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHh-hccCchhccccccCCCC
Confidence 4322 22210 00111111 235799999996 5899876 455667777
Q ss_pred eEEEEEcccCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcChHHHHHHHHHCCCcceeEEEEEcC
Q 011632 277 AVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAG 356 (481)
Q Consensus 277 ~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~ 356 (481)
.+.+++.++|++||||||+||+++|++||++||||.++||+|.|.+.+.++..|+.+..|.+.+.+++......|.+...
T Consensus 257 ~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (472)
T KOG1337|consen 257 AVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLT 336 (472)
T ss_pred cEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888887766
Q ss_pred CccchhhhhhHHHHhhcC---CChHHHHHHHh-------hcCCCCCCChHhHHHHHHHHHHH-HHHHHhcCCCChHHHHH
Q 011632 357 REKEAISDMLPYLRLGYV---SDTSEMQSVIS-------SLGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEA 425 (481)
Q Consensus 357 ~~~~~~~~Ll~~lRl~~~---s~~~el~~~~~-------~~~~~~~~s~~nE~~vl~~L~~~-l~~~L~~y~TT~eeDe~ 425 (481)
+... .+++...++..+ ....++....+ .....++++..+|..++..+... +...+..+.+++++|+.
T Consensus 337 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 414 (472)
T KOG1337|consen 337 GEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDES 414 (472)
T ss_pred CCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhh
Confidence 5432 233333332222 11212222221 11235677889999999999888 88888899999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011632 426 MLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL 464 (481)
Q Consensus 426 ~L~~~~~~~r~~~A~~~R~~EK~IL~~~l~~l~~~~~~l 464 (481)
.+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus 415 vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l 453 (472)
T KOG1337|consen 415 VLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL 453 (472)
T ss_pred hhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence 998887888999999999999999999999998544443
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=3.8e-28 Score=241.12 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=191.3
Q ss_pred cchhHHHHHHHhCC-CCCC-CcEEeecCCCCC-CCCCeeEEEEccCCCCCCeEEEcCccCccChhcccC---cchHHhhh
Q 011632 76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLG---NETIAELL 149 (481)
Q Consensus 76 ~~~~~f~~Wl~~~G-~~~~-~v~i~~~~~~~~-~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~---~~~~~~ll 149 (481)
+..+.|+.|++..+ .+.+ +|.+.+.+..++ .|+ |++|+++|++||.+|.+|++++++..+..- -|...+++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~---g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~ 83 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGA---GIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL 83 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhccc---ceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence 45789999999988 6665 888888765422 244 699999999999999999999999876431 12222222
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCCCchhhHHhcccccCCCccccccCcccCHhHHhhccCCCcHHHHHHHHHHHHHHHH
Q 011632 150 TTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYN 229 (481)
Q Consensus 150 ~~~~l~~~~~Lal~Ll~Er~~g~~S~w~pYi~~LP~~~~~g~l~~~~Pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~y~ 229 (481)
- ++.+.|..|++.|++|+..+.+|+|+||+..+|++. ..++|+||+++|+..|..+.++++..+..+.|.++|-
T Consensus 84 L-ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i 157 (466)
T KOG1338|consen 84 L-NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFI 157 (466)
T ss_pred h-hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHH
Confidence 2 578899999999999998766699999999999987 7999999999999966545555558888888888887
Q ss_pred HHHHHHhhcc-cccc-----------------cc--c----c----------cCceeEeeecccccCCCC-CCceeEEee
Q 011632 230 ELDTVWFMAG-SLFQ-----------------KV--S----L----------ARRFALVPLGPPLLAYSS-KCKAMLAAV 274 (481)
Q Consensus 230 ~l~~~w~~a~-s~f~-----------------~v--~----~----------~~~~~LvPl~Dml~NH~~-~~~~~~~~~ 274 (481)
.+...+.-.. .+|+ ++ . . ....+|+|.+||+ ||+. .|++...++
T Consensus 158 ~~i~pf~~~~p~vfs~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~l-Nhd~~k~nanl~y~ 236 (466)
T KOG1338|consen 158 FVIQPFKQHCPIVFSRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFL-NHDGLKANANLRYE 236 (466)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhh-ccchhhcccceecc
Confidence 7654332110 0111 00 0 0 1246999999976 5665 599999999
Q ss_pred CCeEEEEEcccCCCCCeEEeccCCCChHHHHHhcCccCCCCCC---------CeEEEEEecCCCCcChHHHHHHHHHCC
Q 011632 275 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY---------DRLVVEAALNTEDPQYQDKRMVAQRNG 344 (481)
Q Consensus 275 ~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~---------D~v~l~l~l~~~d~~~~~K~~lL~~~g 344 (481)
++|+.|+|+|+|.+|+||+++||.++|. |+.||.+.-.-.| |.+.+-..++.+++.+..|..+++.++
T Consensus 237 ~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~n 313 (466)
T KOG1338|consen 237 DNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHN 313 (466)
T ss_pred CcceeeeecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999999999998 8889888765321 222223345566677777766555554
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.79 E-value=1.2e-18 Score=153.37 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=105.0
Q ss_pred cCCCCcChHHHHHHHHHCCCcceeEEEEEcCCccchhhhhhHHHHhhcCCChHHHHHHHhhcC------CCCCCChHhHH
Q 011632 326 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 399 (481)
Q Consensus 326 l~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~lRl~~~s~~~el~~~~~~~~------~~~~~s~~nE~ 399 (481)
++++||+++.|.++|+.+|+.....|.+..++. ++.+|++++|+++++ ++++..+..... ...++|..||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 467899999999999999998888999988875 679999999999995 778777655332 23578999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 011632 400 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 450 (481)
Q Consensus 400 ~vl~~L~~~l~~~L~~y~TT~eeDe~~L~~~~~~~r~~~A~~~R~~EK~IL 450 (481)
+++++|...|..+|+.|+||+|||+++|++.....++++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999888888999999999999997
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.42 E-value=4.2e-13 Score=120.24 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=37.9
Q ss_pred CceeEeeecccccCCCCCCceeEEe----eCCeEEEEEcccCCCCCeEEeccC
Q 011632 249 RRFALVPLGPPLLAYSSKCKAMLAA----VDDAVQLVVDRPYKAGESIVVWCG 297 (481)
Q Consensus 249 ~~~~LvPl~Dml~NH~~~~~~~~~~----~~~~~~l~a~r~i~~GeEv~isYG 297 (481)
...+|+|++||+ ||+...|+.+.. .++.+.++|.|+|++|||||++||
T Consensus 111 ~~~~l~p~~d~~-NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADML-NHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGS-EEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHhe-ccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 468999999975 677655555443 488999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.30 E-value=0.00023 Score=60.23 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.0
Q ss_pred EeeecccccCCCCCCceeE--EeeCC--eEEEEEcccCCCCCeEEecc
Q 011632 253 LVPLGPPLLAYSSKCKAML--AAVDD--AVQLVVDRPYKAGESIVVWC 296 (481)
Q Consensus 253 LvPl~Dml~NH~~~~~~~~--~~~~~--~~~l~a~r~i~~GeEv~isY 296 (481)
+.|++++ .||+..+|+.+ ...++ .+.++|.|+|++||||+++|
T Consensus 70 ~~~~~~~-iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 70 KGNIARF-INHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred cCcHHHe-eCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 7788885 58987666554 33333 59999999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=91.70 E-value=0.17 Score=51.56 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=43.9
Q ss_pred eeEeeecccccCCCCCCceeEEeeC-CeEEEEEcccCCCCCeEEeccCCCChHHHHHhcCccCCCCCC
Q 011632 251 FALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY 317 (481)
Q Consensus 251 ~~LvPl~Dml~NH~~~~~~~~~~~~-~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~ 317 (481)
.-|=|-+ +.||+-.+|..|...+ +...+++.|||++||||.-.||. ||.-++|.+
T Consensus 192 LwLGPaa--fINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 192 LWLGPAA--FINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred heeccHH--hhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 4566766 5689888888887766 78999999999999999999996 566666653
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=89.83 E-value=0.32 Score=48.10 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=35.3
Q ss_pred ccCCCC--CCceeEEe--eCCeEEEEEcccCCCCCeEEeccCCCChHHHHH
Q 011632 260 LLAYSS--KCKAMLAA--VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 306 (481)
Q Consensus 260 l~NH~~--~~~~~~~~--~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl 306 (481)
|.||+. ++...+-. ....+.+.|.|+|.+|||+...||++|-+-++.
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 568875 44443332 234799999999999999999999998776553
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=83.92 E-value=0.95 Score=49.71 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.8
Q ss_pred ccCCCCCCc--ee--EEeeCCeEEEEEcccCCCCCeEEeccC
Q 011632 260 LLAYSSKCK--AM--LAAVDDAVQLVVDRPYKAGESIVVWCG 297 (481)
Q Consensus 260 l~NH~~~~~--~~--~~~~~~~~~l~a~r~i~~GeEv~isYG 297 (481)
+.||+.++| +. +-..+..+-+.|.|.|.+|||+|..|+
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 458987654 33 334566788999999999999999997
No 9
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=71.82 E-value=4.1 Score=33.78 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.1
Q ss_pred EEEEccCCCCCCeEEEcCccCccChhc
Q 011632 112 YVAASEDLQAGDAAFSVPNSLVVTLER 138 (481)
Q Consensus 112 Gl~At~dI~~ge~ll~IP~~~~it~~~ 138 (481)
||+|+++|++|+.|+..+-.++...+.
T Consensus 13 gl~a~~~i~~g~~i~~~~g~~~~~~~~ 39 (116)
T smart00317 13 GVRATEDIPKGEFIGEYVGEIITSEEA 39 (116)
T ss_pred EEEECCccCCCCEEEEEEeEEECHHHH
Confidence 799999999999999998887766443
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=67.50 E-value=5.6 Score=46.58 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=29.1
Q ss_pred ccCCC--CCCceeEEeeC--CeEEEEEcccCCCCCeEEeccC
Q 011632 260 LLAYS--SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 297 (481)
Q Consensus 260 l~NH~--~~~~~~~~~~~--~~~~l~a~r~i~~GeEv~isYG 297 (481)
|.||+ +||.+.+-..+ ..++++|.|+|.+||||+..|-
T Consensus 942 ~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 942 FINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred eeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 45787 46766654433 3699999999999999999885
No 11
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=54.38 E-value=12 Score=39.61 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=30.8
Q ss_pred eCCeEEEEEcccCCCCCeEEeccCCCChHHHHHhcC
Q 011632 274 VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 309 (481)
Q Consensus 274 ~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG 309 (481)
.+..+-+++.|+|.+|||+.++||.--+.+|...+|
T Consensus 120 ~~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 120 IGENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred ccCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 345688899999999999999999877888777777
No 12
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.99 E-value=15 Score=40.92 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=27.2
Q ss_pred ccCCCCCCcee---EEeeC-CeEEEEEcccCCCCCeEEeccC
Q 011632 260 LLAYSSKCKAM---LAAVD-DAVQLVVDRPYKAGESIVVWCG 297 (481)
Q Consensus 260 l~NH~~~~~~~---~~~~~-~~~~l~a~r~i~~GeEv~isYG 297 (481)
|.||+-++|+. |...+ -.+=+-+.+.|++||||...|+
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 45898555543 54433 3455778999999999999887
No 13
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=52.42 E-value=7.9 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=28.1
Q ss_pred cCCCCCCceeEE--eeCC--eEEEEEcccCCCCCeEEeccCC
Q 011632 261 LAYSSKCKAMLA--AVDD--AVQLVVDRPYKAGESIVVWCGP 298 (481)
Q Consensus 261 ~NH~~~~~~~~~--~~~~--~~~l~a~r~i~~GeEv~isYG~ 298 (481)
.||+..+|.... ...+ .+.+++.+||++||||...||.
T Consensus 409 ~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 409 INHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred eecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 478866554432 2323 6778899999999999999986
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=38.43 E-value=33 Score=40.17 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCce-eEEeeCC-eEEEEEcccCCCCCeEEeccCCC
Q 011632 266 KCKA-MLAAVDD-AVQLVVDRPYKAGESIVVWCGPQ 299 (481)
Q Consensus 266 ~~~~-~~~~~~~-~~~l~a~r~i~~GeEv~isYG~~ 299 (481)
+|.. .|...+. .+.+.|.|||.+||||+..|..+
T Consensus 1261 Nc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1261 NCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred CCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 4443 3544332 46788999999999999999754
No 15
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=29.09 E-value=79 Score=26.71 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=22.7
Q ss_pred eeCCeEEEEEcccCCCCCeEEeccCCC
Q 011632 273 AVDDAVQLVVDRPYKAGESIVVWCGPQ 299 (481)
Q Consensus 273 ~~~~~~~l~a~r~i~~GeEv~isYG~~ 299 (481)
.....+.+...+.|..||+|.++|-+-
T Consensus 72 ~s~ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 72 GSNTTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred CcccEEEEEecccccCCCEEEEEeeCC
Confidence 344589999999999999999999643
No 16
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=27.53 E-value=2.1e+02 Score=26.46 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CChHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 011632 397 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 453 (481)
Q Consensus 397 nE~~vl~~L~~~l~~~L~~y~-TT~eeDe~~L~~~~~~~r~~~A~~~R~~EK~IL~~~ 453 (481)
|=..+++-|++.+.+.-+.-+ .+-+||.+.+ ..|...|.+-|+.||++...-
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~-----r~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKI-----RIRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHhhhHH
Confidence 445677888888887766544 4557777665 467889999999999987653
No 17
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=26.80 E-value=39 Score=25.05 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.6
Q ss_pred EEEEccCCCCCCeE
Q 011632 112 YVAASEDLQAGDAA 125 (481)
Q Consensus 112 Gl~At~dI~~ge~l 125 (481)
-++|++||++|+.|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999987
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.99 E-value=76 Score=21.51 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=13.9
Q ss_pred hhHHHHHHHhCCCCCC
Q 011632 78 LGDLKSWMHKNGLPPC 93 (481)
Q Consensus 78 ~~~f~~Wl~~~G~~~~ 93 (481)
..+|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4689999999999875
No 19
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.98 E-value=67 Score=31.95 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=50.0
Q ss_pred CccccccCCcccccccccchhHHHHHHHh-CCCCCCCcEEeecCCCCCCCCCeeEEEEccCCCCCCeEEEcCccCccChh
Q 011632 59 SSDTLVAGSREVVSKKEEDLGDLKSWMHK-NGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLE 137 (481)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~f~~Wl~~-~G~~~~~v~i~~~~~~~~~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~ 137 (481)
..|++..|.++.++...+.-..+-+||.= ......+|++. +.|+ +.++|+++.|...+++|.-+++|..
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~------dg~~----v~v~R~le~g~e~~e~~LPaVvtv~ 180 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIV------DGGK----VTVERELEGGLETVEAPLPAVVTVD 180 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEc------CCCe----EEEEEEcCCceEEEEccCCEEEEec
Confidence 35677777777666666665556666532 11112344442 1132 8999999999999999999999988
Q ss_pred cccCcch
Q 011632 138 RVLGNET 144 (481)
Q Consensus 138 ~~~~~~~ 144 (481)
.-...|.
T Consensus 181 ~~~n~PR 187 (260)
T COG2086 181 LRINEPR 187 (260)
T ss_pred cccCCCC
Confidence 7654443
No 20
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.10 E-value=12 Score=39.13 Aligned_cols=71 Identities=13% Similarity=-0.057 Sum_probs=51.1
Q ss_pred ceeEeeecccccCCCCCCcee--EEeeCCeEEEEEcccCCCCCeEEeccCCCChHHHHHhcC-ccCC-CCCCCeEEE
Q 011632 250 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDE-DNPYDRLVV 322 (481)
Q Consensus 250 ~~~LvPl~Dml~NH~~~~~~~--~~~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG-Fv~~-~Np~D~v~l 322 (481)
..++.|+.+|.+--..-++.. .....+...+++.|.+ |.|..++|+...+.++...|| |.-. --|++.+-+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV 343 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee
Confidence 467888888764222223322 2234456788899998 999999999999999999999 5443 368887766
Done!