BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011633
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 29/215 (13%)
Query: 37 DIHNGDE--TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQ 92
D+H+ D+ T T + KA ++ LV GL T SN +GP +
Sbjct: 140 DLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEK 199
Query: 93 LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 152
L+PL++ A G + + G+G+ + D+ YVE+ A A C A G + I
Sbjct: 200 LIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCVA------TTGKVGETYNIGG 253
Query: 153 LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 212
K D + I E L P P GV Y L+ ++ ++ G H L Y +
Sbjct: 254 HNERKNLDVVETICELLEELAP--NKPHGVAHYRD-LITFVADRPG-----HDLR--YAI 303
Query: 213 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 247
+ R C+ P + E G+ T+Q
Sbjct: 304 DASKIARELGCV---------PQETFESGMRKTVQ 329
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 59 KAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 116
KA ++ LVL L R +N +GP +L+P + A G I G+G+N+
Sbjct: 155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNV 214
Query: 117 SDFTYVENVAHAHVCAAEAL----DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 172
D+ YVE+ HV A E + +SR + TNLE +K IIL +G
Sbjct: 215 RDWLYVED----HVRAIELVLLKGESREIYNISAGEEKTNLEVVK------IILRLMGKG 264
Query: 173 RPFIKL 178
I+L
Sbjct: 265 EELIEL 270
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 12 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 71
ACR+ V +LV+ ST ++ + +ET + + KA E +
Sbjct: 102 EACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPP--RPKSPYAASKAAFEHYLSVYGQ 159
Query: 72 IDGLLTCALRPSNVFGP-----GDTQLVPLLVNLAKPG-----WTKFIIGSGENMSDFTY 121
GL +LR NV+GP G+ +V + G + + G + D+ Y
Sbjct: 160 SYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVY 219
Query: 122 VENVAHAHVCAAEALDS 138
V +VA AH A +L+
Sbjct: 220 VGDVAEAHALALFSLEG 236
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 4 VQGAKNVVTACRECKVRRLVYNSTADVVFD--GSHDIHNGDETLTCCWKFQDLMCDLKAQ 61
+ G N++ A R+ KV+ Y +++ D G + + + + +L A
Sbjct: 130 IDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYAD 189
Query: 62 AEALVLFANNIDGLLTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGEN 115
+ G T LR NVFG P ++P + G +I G GE
Sbjct: 190 VFSRCY------GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGET 243
Query: 116 MSDFTYVENVAHAHVCAAEA-LDSR 139
DF Y+EN A++ AA A LD+R
Sbjct: 244 SRDFCYIENTVQANLLAATAGLDAR 268
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 59 KAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 116
KA ++ LV GL T SN +GP +L+PL++ A G I G G+ +
Sbjct: 171 KASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQI 230
Query: 117 SDFTYVENVAHA-HVCAAEALDSRMVSVAG 145
D+ YVE+ A A H+ E ++ G
Sbjct: 231 RDWLYVEDHARALHMVVTEGKAGETYNIGG 260
>pdb|2XD8|A Chain A, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|B Chain B, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|C Chain C, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|D Chain D, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|E Chain E, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|F Chain F, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|G Chain G, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
Length = 375
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 98 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 157
N +PG T+ +GSG N SD + +A AA A+D + VS G L P +
Sbjct: 158 TNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQGRCAV---LNPRQ 214
Query: 158 FWDFLSII 165
++ + I
Sbjct: 215 YYALIQDI 222
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 74 GLLTCALRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 127
G T LR NVFG ++P G +I G GE DF Y++NV
Sbjct: 194 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 253
Query: 128 AHVCAAEALDSRMVSVAGMA 147
++ +A A DS ++ +A
Sbjct: 254 MNILSALAKDSAKDNIYNVA 273
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 74 GLLTCALRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 127
G T LR NVFG ++P G +I G GE DF Y++NV
Sbjct: 194 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 253
Query: 128 AHVCAAEALDSRMVSVAGMA 147
++ +A A DS ++ +A
Sbjct: 254 MNILSALAKDSAKDNIYNVA 273
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 74 GLLTCALRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 127
G T LR NVFG ++P G +I G GE DF Y++NV
Sbjct: 188 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 247
Query: 128 AHVCAAEALDSRMVSVAGMA 147
++ +A A DS ++ +A
Sbjct: 248 MNILSALAKDSAKDNIYNVA 267
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 74 GLLTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 127
G T LR NVFG P ++P G +I G GE DF Y++NV
Sbjct: 207 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 266
Query: 128 AHVCAAEALDSRMVSVAGMA 147
++ +A A DS ++ +A
Sbjct: 267 MNILSALAKDSAKDNIYNVA 286
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 5 QGAKNVVTACRECKVRRLVYNSTADVVFD-GSHDIHNGDETLTCCWKFQDLMCDLKAQAE 63
Q N++ R K + ++Y S+A V + + ++ +E+ + F L D
Sbjct: 117 QAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMD------ 169
Query: 64 ALVLFANNIDGLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKF----IIGSGENM 116
VL +N + + LR NV+GP + + +++ LA G F + GE +
Sbjct: 170 EFVLSHSNDN--VQVGLRYFNVYGPREFYKEKTASMVLQLAL-GAMAFKEVKLFEFGEQL 226
Query: 117 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG-YQRPF 175
DF Y+E+V A+V A +A S + +V + + + +SI+ E LG ++ +
Sbjct: 227 RDFVYIEDVIQANVKAMKAQKSGVYNVGYS-------QARSYNEIVSILKEHLGDFKVTY 279
Query: 176 IKLP 179
IK P
Sbjct: 280 IKNP 283
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 42/246 (17%)
Query: 4 VQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 63
VQG + ++ + V R+V+ ST +V GS I +G T + + KA ++
Sbjct: 104 VQGTQTLLQCAVDAGVGRVVHVSTDEVY--GS--IDSGSWTESSPLEPNSPYAASKAGSD 159
Query: 64 ALVLFANNIDGLLTCALRPSNVFGP--GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 121
+ + GL R N +GP +L+PL V G T + G G N+ ++ +
Sbjct: 160 LVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVH 219
Query: 122 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 181
++ H A R AG + I + + I+L+ LG
Sbjct: 220 TDD--HCRGIALVLAGGR----AGEIYHIGGGLELTNRELTGILLDSLGAD--------- 264
Query: 182 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 241
W V+ + ++ G H L + D ++ +GY P VS +G
Sbjct: 265 --WSS---VRKVADRKG-----HDLR-----------YSLDGGKIERELGYRPQVSFADG 303
Query: 242 VSSTIQ 247
++ T++
Sbjct: 304 LARTVR 309
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 4 VQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC------ 56
++G ++ +C K VRRLV+ S+A V H + DE+ CW + C
Sbjct: 104 IEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDES---CWSDMEF-CRAKKMT 159
Query: 57 --------DLKAQAEALVLFANNIDGLLTCALRPSNVFGPG-DTQLVPLLVNLAKPGWTK 107
L QA NNID + + P+ V GP + + P L+ P
Sbjct: 160 AWMYFVSKTLAEQAAWKYAKENNIDFI---TIIPTLVVGPFIMSSMPPSLITALSP---- 212
Query: 108 FIIGSGENMS-----DFTYVENVAHAHV 130
I G+ + S F +++++ +AH+
Sbjct: 213 -ITGNEAHYSIIRQGQFVHLDDLCNAHI 239
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 42/246 (17%)
Query: 4 VQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 63
VQG + ++ + V R+V+ ST V GS I +G T + + KA ++
Sbjct: 104 VQGTQTLLQCAVDAGVGRVVHVSTNQVY--GS--IDSGSWTESSPLEPNSPYAASKAGSD 159
Query: 64 ALVLFANNIDGLLTCALRPSNVFGP--GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 121
+ + GL R N +GP +L+PL V G T + G G N+ ++ +
Sbjct: 160 LVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVH 219
Query: 122 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 181
++ H A R AG + I + + I+L+ LG
Sbjct: 220 TDD--HCRGIALVLAGGR----AGEIYHIGGGLELTNRELTGILLDSLGAD--------- 264
Query: 182 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 241
W V+ + ++ G H L + D ++ +GY P VS +G
Sbjct: 265 --WSS---VRKVADRKG-----HDLR-----------YSLDGGKIERELGYRPQVSFADG 303
Query: 242 VSSTIQ 247
++ T++
Sbjct: 304 LARTVR 309
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 84 NVFGPGDTQ--LVPLL-VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 133
NV+GPG+ LVP L NL + G GE DFTY+ +V V A
Sbjct: 173 NVYGPGERPDALVPRLCANLLTRNELP-VEGDGEQRRDFTYITDVVDKLVALA 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,022,640
Number of Sequences: 62578
Number of extensions: 489625
Number of successful extensions: 734
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 18
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)