BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011636
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 177/321 (55%), Gaps = 16/321 (4%)
Query: 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLA 84
+G +G A++ TVV++ + NG + +L+ + L+A+G +GI V+VG PND+L+
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 85 SLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAA 144
+LA+S A WV N+ + + V+ RYV VGNE G R PA++NV A
Sbjct: 61 NLAASPAAAASWVKSNIQAYPK---VSFRYVCVGNE-----VAGGATRNLVPAMKNVHGA 112
Query: 145 LIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIY 204
L+ AGL +KVT ++ + S PS G F + M +V+FL+ P NIY
Sbjct: 113 LVAAGLG-HIKVTTSVSQAILGVFS-PPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIY 170
Query: 205 PFISL-YIDSNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIII 263
P+++ Y S + YA F+ + + + DG Y N+FD D A+ K+G ++ +++
Sbjct: 171 PYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVV 230
Query: 264 GEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPG 323
E GWP+ G A AR +NQ ++H+ G+GTP PG I+ Y+F++ +E+ K D G
Sbjct: 231 SESGWPSGGGTAATPANARFYNQHLINHV--GRGTPRHPGAIETYIFAMFNENQK--DSG 286
Query: 324 NFERHWGIFTYDGRPKYQLNL 344
E++WG+F + + Y +N
Sbjct: 287 -VEQNWGLFYPNMQHVYPINF 306
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 182/324 (56%), Gaps = 16/324 (4%)
Query: 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLA 84
+G +G ++ PP VV+L + N + +L+D + L+AL S I+V++ +P +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 85 SLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFL-RTTFPALRNVQA 143
SLAS+ A W+ +NV + +V+ RY+AVGN E GS L + PA+RN+
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWP--SVSFRYIAVGN----ELIPGSDLAQYILPAMRNIYN 114
Query: 144 ALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNI 203
AL AGL NQ+KV+ ++ V + S PS G F + + IV+FL+ NG P VN+
Sbjct: 115 ALSSAGLQNQIKVSTAVDTGVLGT-SYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNV 173
Query: 204 YPFISLYID-SNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPII 262
YP+ S + + YA F + + DG +Y N+FDA D + AL++ G N+ ++
Sbjct: 174 YPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVV 233
Query: 263 IGEIGWPT-DGDRNANNEYARRFNQGFMSHISGGKGTPMRPG-PIDAYLFSLIDEDAKSV 320
+ E GWP+ G A+ A+ +NQ + H+ G GTP RPG I+AY+F + +E+ K+
Sbjct: 234 VSESGWPSAGGGAEASTSNAQTYNQNLIRHVGG--GTPRRPGKEIEAYIFEMFNENQKA- 290
Query: 321 DPGNFERHWGIFTYDGRPKYQLNL 344
G E+++G+F + +P YQ++
Sbjct: 291 --GGIEQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 170/322 (52%), Gaps = 12/322 (3%)
Query: 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLA 84
+G +G A++ + V+ L N +K +++ AL S IE+++ +PN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 85 SLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAA 144
+LA+ A WV N+ H +V +Y+AVGNE +G + R PA+ N+ A
Sbjct: 63 ALANP-SNANGWVQDNIRNHFP--DVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 145 LIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIY 204
L AGL NQ+KV+ + + + + P FR + + I+ FL+ + P NIY
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLL-TNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 205 PFISLYIDSN-FPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIII 263
P+ ++N P+ YA F N ND G Y N+FDA D++ A +K G N+ II+
Sbjct: 179 PYFGHIDNTNAVPLSYALF--NQQRRNDTG--YQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 264 GEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGP-IDAYLFSLIDEDAKSVDP 322
E GWP++G A + AR + ++H+ G GTP +PG I+ YLF++ DE+ K +
Sbjct: 235 SESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 323 GNFERHWGIFTYDGRPKYQLNL 344
E+H+G+F D RPKYQLN
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 169/322 (52%), Gaps = 12/322 (3%)
Query: 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLA 84
+G +G A++ + V+ L N +K +++ AL S IE+++ +PN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 85 SLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAA 144
+LA+ A WV N+ H +V +Y+AVGNE +G + R PA+ N+ A
Sbjct: 63 ALANP-SNANGWVQDNIRNHFP--DVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 145 LIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIY 204
L AGL NQ+KV+ + + + + P FR + + I+ FL+ + P NIY
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLL-TNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 205 PFISLYIDSN-FPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIII 263
P+ ++N P+ YA F N ND G Y N+FDA D++ A +K G N+ II+
Sbjct: 179 PYFGHIDNTNAVPLSYALF--NQQRRNDTG--YQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 264 GEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGP-IDAYLFSLIDEDAKSVDP 322
GWP++G A + AR + ++H+ G GTP +PG I+ YLF++ DE+ K +
Sbjct: 235 SASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 323 GNFERHWGIFTYDGRPKYQLNL 344
E+H+G+F D RPKYQLN
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 172/323 (53%), Gaps = 12/323 (3%)
Query: 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLA 84
+G +G Q ++ P V+ L + + + +++D + L AL S IE+++G+PN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 85 SLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFL-RTTFPALRNVQA 143
SL + A+ WV +NV ++V RY+AVGNE ++L + PA+RN+
Sbjct: 62 SLTNP-SNAKSWVQKNVRGFW--SSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHD 118
Query: 144 ALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNI 203
A+ AGL +Q+KV+ ++ + + S PS G FR D+ + I++FLS P NI
Sbjct: 119 AIRSAGLQDQIKVSTAIDLTLVGN-SYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANI 177
Query: 204 YPFISLYID-SNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPII 262
YP+ + + + + YA F S + DG Y N+FDA D L AL++ G+L ++
Sbjct: 178 YPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVV 237
Query: 263 IGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPG-PIDAYLFSLIDEDAKSVD 321
+ E GWP+ G A + R + + H+ +GTP RP I+ YLF++ DE+ K +
Sbjct: 238 VSESGWPSAGAFAATFDNGRTYLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKKQPE 295
Query: 322 PGNFERHWGIFTYDGRPKYQLNL 344
E+H+G+F + KY LN
Sbjct: 296 ---VEKHFGLFFPNKWQKYNLNF 315
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 164/312 (52%), Gaps = 21/312 (6%)
Query: 37 LPPET-VVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLASLASSMKTAEK 95
LP + VV L R G +++ AD L AL SGI +++ I ND LA++A+S A
Sbjct: 12 LPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAAS 71
Query: 96 WVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVK 155
WV NV + VNI+Y+A GNE G ++ PA+RN+ AAL A +K
Sbjct: 72 WVQNNVRPYYPA--VNIKYIAAGNE-----VQGGATQSILPAMRNLNAALSAA-GLGAIK 123
Query: 156 VTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYIDS-- 213
V+ + D + S PS G F+ + M + + L+ G P N+YP+ + Y D+
Sbjct: 124 VSTSIRFDEVAN-SFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYPYFA-YRDNPG 178
Query: 214 NFPVEYAFFD-GNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDG 272
+ + YA F G + + G TY ++FDA D + AL+K G + +++ E GWP+ G
Sbjct: 179 SISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAG 238
Query: 273 DRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIF 332
A+ AR +NQG ++H+ G GTP + ++ Y+F++ +E+ K+ D ER +G+F
Sbjct: 239 GFAASAGNARTYNQGLINHVGG--GTPKKREALETYIFAMFNENQKTGDAT--ERSFGLF 294
Query: 333 TYDGRPKYQLNL 344
D P Y +
Sbjct: 295 NPDKSPAYNIQF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 364 KWCVMKPSARLDDPQVAPSVSYACGLA-DCTSLGYGTSCGNLDA-RGNISYAFNSYYQKN 421
WCV KP + D Q+ +++YAC DC + G +C + + + +Y N YYQ
Sbjct: 12 SWCVPKPG--VSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHA 69
Query: 422 NQLDTACKFPNLSMITKADPSVGSCIF 448
+ C F + +T +PS G+C F
Sbjct: 70 GRNSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 17/75 (22%)
Query: 117 VGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGD 176
V N+ FL+ Y + L++ FP L++ Q L GL + LN D +P+
Sbjct: 968 VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS-------LNQD-------IPA--- 1010
Query: 177 FRADIHDLMLAIVKF 191
F+ + D ++ I +F
Sbjct: 1011 FKEHLRDFLVQIKEF 1025
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
pdb|1W9C|B Chain B, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
Length = 321
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 17/75 (22%)
Query: 117 VGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGD 176
V N+ FL+ Y + L++ FP L++ Q L GL + LN D +P+
Sbjct: 262 VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS-------LNQD-------IPA--- 304
Query: 177 FRADIHDLMLAIVKF 191
F+ + D ++ I +F
Sbjct: 305 FKEHLRDFLVQIKEF 319
>pdb|3A54|A Chain A, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A54|B Chain B, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A55|A Chain A, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
pdb|3A55|B Chain B, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
Length = 305
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 383 VSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPS 442
V+ +CG A +S Y + GN+ R NSY NN ++T C S+++ PS
Sbjct: 236 VNTSCGSASVSS--YANTAGNVYYRS----PSNSYLYDNNLINTNCVLTKFSLLSGCSPS 289
Query: 443 ----VGSCIF 448
V SC F
Sbjct: 290 PAPDVSSCGF 299
>pdb|3A56|A Chain A, Crystal Structure Of Pro- Protein-Glutaminase
pdb|3A56|B Chain B, Crystal Structure Of Pro- Protein-Glutaminase
Length = 305
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 383 VSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPS 442
V+ +CG A +S Y + GN+ R NSY NN ++T C S+++ PS
Sbjct: 236 VNTSCGSASVSS--YANTAGNVYYRS----PSNSYLYDNNLINTNCVLTKFSLLSGCSPS 289
Query: 443 ----VGSCIF 448
V SC F
Sbjct: 290 PAPDVSSCGF 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,254,372
Number of Sequences: 62578
Number of extensions: 707026
Number of successful extensions: 1482
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 21
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)