Query 011636
Match_columns 480
No_of_seqs 227 out of 1639
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.2E-83 4.7E-88 649.8 25.0 307 25-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 6E-39 1.3E-43 309.6 23.9 248 22-336 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.4E-28 5.1E-33 202.8 6.3 83 364-448 1-85 (85)
4 PF03198 Glyco_hydro_72: Gluca 99.9 2.3E-23 4.9E-28 208.2 12.6 238 25-338 30-295 (314)
5 PF07983 X8: X8 domain; Inter 99.8 1.4E-21 3.1E-26 159.5 4.7 70 364-435 1-78 (78)
6 PF07745 Glyco_hydro_53: Glyco 99.0 8E-08 1.7E-12 98.8 22.4 247 39-342 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.3 2.5E-05 5.3E-10 78.2 17.0 206 39-294 65-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.2 0.00015 3.2E-09 80.7 20.7 253 25-342 295-585 (604)
9 PF00150 Cellulase: Cellulase 98.0 0.00083 1.8E-08 66.2 19.7 128 24-154 10-168 (281)
10 smart00633 Glyco_10 Glycosyl h 97.3 0.035 7.5E-07 55.1 20.6 79 247-341 171-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.3 0.24 5.2E-06 48.8 16.7 67 259-338 166-232 (239)
12 TIGR03356 BGL beta-galactosida 96.0 2.3 5E-05 45.7 23.4 44 40-83 57-119 (427)
13 PF00232 Glyco_hydro_1: Glycos 94.8 0.17 3.7E-06 54.6 10.2 278 40-335 61-430 (455)
14 PF02836 Glyco_hydro_2_C: Glyc 94.7 0.36 7.8E-06 48.8 11.8 96 24-121 17-132 (298)
15 PLN02814 beta-glucosidase 93.5 6 0.00013 43.5 19.0 46 40-85 80-144 (504)
16 PLN02998 beta-glucosidase 89.0 40 0.00087 37.1 22.0 46 40-85 85-149 (497)
17 PF02449 Glyco_hydro_42: Beta- 88.6 2.2 4.7E-05 44.7 9.1 82 40-123 13-140 (374)
18 cd02875 GH18_chitobiase Chitob 80.3 11 0.00025 39.4 9.9 96 49-150 54-150 (358)
19 PF01229 Glyco_hydro_39: Glyco 78.0 1.1E+02 0.0024 33.3 20.6 248 44-339 47-350 (486)
20 PF03662 Glyco_hydro_79n: Glyc 75.3 12 0.00026 38.8 8.0 85 63-147 114-202 (319)
21 COG4782 Uncharacterized protei 70.8 13 0.00027 39.2 7.0 59 235-296 124-188 (377)
22 PRK09525 lacZ beta-D-galactosi 68.3 50 0.0011 39.6 12.2 97 24-122 352-464 (1027)
23 PRK09936 hypothetical protein; 66.8 46 0.001 34.1 9.8 61 22-82 19-96 (296)
24 PLN03059 beta-galactosidase; P 64.0 2.2E+02 0.0047 33.5 15.7 117 41-161 63-223 (840)
25 PF00925 GTP_cyclohydro2: GTP 62.4 8.3 0.00018 36.1 3.5 38 42-79 131-168 (169)
26 PF14488 DUF4434: Domain of un 62.4 1.3E+02 0.0029 28.0 11.5 100 41-149 24-152 (166)
27 smart00481 POLIIIAc DNA polyme 56.9 34 0.00073 26.3 5.6 45 36-80 14-63 (67)
28 PRK13511 6-phospho-beta-galact 55.8 24 0.00051 38.5 6.1 80 39-122 56-162 (469)
29 cd02872 GH18_chitolectin_chito 54.4 88 0.0019 32.4 9.9 77 70-149 69-151 (362)
30 PRK10340 ebgA cryptic beta-D-g 54.4 76 0.0017 38.1 10.4 97 24-122 336-451 (1021)
31 COG3934 Endo-beta-mannanase [C 53.5 38 0.00082 37.0 6.9 186 94-342 123-312 (587)
32 TIGR00505 ribA GTP cyclohydrol 48.0 27 0.00057 33.4 4.4 33 43-75 131-163 (191)
33 PRK00393 ribA GTP cyclohydrola 47.8 27 0.00058 33.5 4.4 33 43-75 134-166 (197)
34 PF02055 Glyco_hydro_30: O-Gly 47.1 4.3E+02 0.0094 29.1 14.1 66 95-161 208-282 (496)
35 PLN02849 beta-glucosidase 46.7 37 0.00081 37.4 5.9 46 40-85 82-146 (503)
36 cd00598 GH18_chitinase-like Th 46.5 51 0.0011 30.8 6.1 85 62-150 53-142 (210)
37 PRK09593 arb 6-phospho-beta-gl 46.4 51 0.0011 36.0 6.8 47 39-85 75-141 (478)
38 PF05990 DUF900: Alpha/beta hy 45.0 60 0.0013 31.8 6.5 40 252-294 43-88 (233)
39 cd02874 GH18_CFLE_spore_hydrol 40.8 96 0.0021 31.4 7.5 83 61-150 48-138 (313)
40 TIGR03632 bact_S11 30S ribosom 40.1 65 0.0014 27.9 5.2 37 40-76 50-91 (108)
41 PRK09589 celA 6-phospho-beta-g 39.4 68 0.0015 35.1 6.4 47 39-85 69-135 (476)
42 PRK12485 bifunctional 3,4-dihy 39.2 36 0.00079 36.0 4.1 34 42-76 330-363 (369)
43 PRK14019 bifunctional 3,4-dihy 37.1 40 0.00088 35.6 4.1 35 43-78 328-362 (367)
44 cd00641 GTP_cyclohydro2 GTP cy 36.6 50 0.0011 31.5 4.3 36 43-78 133-168 (193)
45 COG2730 BglC Endoglucanase [Ca 36.1 2.4E+02 0.0051 30.1 9.8 108 40-149 76-219 (407)
46 PRK15014 6-phospho-beta-glucos 35.5 68 0.0015 35.1 5.7 46 39-84 71-136 (477)
47 PF14871 GHL6: Hypothetical gl 34.9 91 0.002 28.0 5.5 43 39-81 2-67 (132)
48 COG1433 Uncharacterized conser 34.7 76 0.0016 28.3 4.8 40 40-79 55-94 (121)
49 PRK09852 cryptic 6-phospho-bet 34.0 1.3E+02 0.0028 32.9 7.5 71 258-337 365-444 (474)
50 PRK09314 bifunctional 3,4-dihy 33.5 53 0.0012 34.4 4.2 34 42-75 300-334 (339)
51 PF13756 Stimulus_sens_1: Stim 32.5 61 0.0013 28.2 3.9 25 38-62 2-29 (112)
52 cd01543 PBP1_XylR Ligand-bindi 32.5 4.5E+02 0.0097 25.0 10.9 35 40-74 98-141 (265)
53 PRK09318 bifunctional 3,4-dihy 32.4 58 0.0013 34.7 4.4 37 43-79 320-356 (387)
54 TIGR01579 MiaB-like-C MiaB-lik 32.2 4E+02 0.0087 28.2 10.8 26 183-209 305-330 (414)
55 PF13377 Peripla_BP_3: Peripla 31.3 3.5E+02 0.0076 23.5 10.5 122 43-192 1-134 (160)
56 PLN02831 Bifunctional GTP cycl 31.1 61 0.0013 35.3 4.3 37 43-79 373-409 (450)
57 PRK08815 GTP cyclohydrolase; P 31.0 62 0.0014 34.3 4.3 37 43-79 305-341 (375)
58 smart00636 Glyco_18 Glycosyl h 30.7 1.8E+02 0.004 29.5 7.7 80 64-148 57-142 (334)
59 COG3250 LacZ Beta-galactosidas 30.6 1.6E+02 0.0035 34.5 7.9 96 25-122 303-408 (808)
60 PRK09319 bifunctional 3,4-dihy 30.2 65 0.0014 35.9 4.4 38 42-79 342-379 (555)
61 PRK09311 bifunctional 3,4-dihy 30.0 66 0.0014 34.5 4.3 38 42-79 338-375 (402)
62 COG4669 EscJ Type III secretor 29.8 1.8E+02 0.0039 29.1 6.9 144 1-175 1-148 (246)
63 TIGR03628 arch_S11P archaeal r 28.9 1.2E+02 0.0027 26.6 5.2 37 40-76 53-102 (114)
64 PRK13347 coproporphyrinogen II 28.8 94 0.002 33.6 5.4 53 40-92 152-227 (453)
65 PRK09607 rps11p 30S ribosomal 28.6 1.3E+02 0.0027 27.3 5.2 37 40-76 60-109 (132)
66 cd02873 GH18_IDGF The IDGF's ( 28.4 4.1E+02 0.009 28.3 10.1 20 131-150 168-187 (413)
67 cd04743 NPD_PKS 2-Nitropropane 28.1 3.2E+02 0.0069 28.4 8.8 59 22-81 55-113 (320)
68 PF00834 Ribul_P_3_epim: Ribul 28.1 5.4E+02 0.012 24.7 9.9 94 39-151 69-166 (201)
69 PF00411 Ribosomal_S11: Riboso 28.0 87 0.0019 27.2 4.0 36 41-76 51-91 (110)
70 PRK05309 30S ribosomal protein 27.1 1.4E+02 0.0031 26.7 5.3 36 40-75 67-107 (128)
71 TIGR02631 xylA_Arthro xylose i 26.4 7.9E+02 0.017 26.0 13.8 156 37-209 32-220 (382)
72 PF13721 SecD-TM1: SecD export 26.2 2.3E+02 0.0049 24.2 6.3 36 22-57 31-66 (101)
73 PF01301 Glyco_hydro_35: Glyco 26.2 7.3E+02 0.016 25.5 13.6 106 40-152 27-174 (319)
74 PF06117 DUF957: Enterobacteri 25.9 1E+02 0.0023 24.3 3.6 42 93-148 13-55 (65)
75 PF04909 Amidohydro_2: Amidohy 25.8 1.5E+02 0.0033 28.3 5.9 53 136-203 85-137 (273)
76 PF11395 DUF2873: Protein of u 25.0 63 0.0014 22.8 2.0 14 466-479 14-27 (43)
77 PF13547 GTA_TIM: GTA TIM-barr 24.1 1.4E+02 0.003 30.6 5.2 55 110-169 18-78 (299)
78 PRK07198 hypothetical protein; 23.5 66 0.0014 34.4 2.8 38 43-80 338-376 (418)
79 PF14587 Glyco_hydr_30_2: O-Gl 23.4 6.1E+02 0.013 27.1 10.0 97 62-161 108-227 (384)
80 KOG0626 Beta-glucosidase, lact 21.7 2E+02 0.0043 31.9 6.1 74 253-335 402-486 (524)
81 PRK08091 ribulose-phosphate 3- 21.3 7.6E+02 0.016 24.3 9.6 96 39-151 80-179 (228)
82 COG1453 Predicted oxidoreducta 21.1 82 0.0018 33.4 3.0 18 256-276 194-211 (391)
83 PLN00196 alpha-amylase; Provis 21.0 1.7E+02 0.0037 31.5 5.5 57 25-81 29-115 (428)
84 cd00854 NagA N-acetylglucosami 20.9 1.5E+02 0.0032 31.0 4.9 45 36-81 145-195 (374)
85 PRK14326 (dimethylallyl)adenos 20.8 6.6E+02 0.014 27.6 10.1 58 24-81 208-277 (502)
86 TIGR02049 gshA_ferroox glutama 20.7 4.8E+02 0.01 27.9 8.4 99 196-315 208-319 (403)
87 cd06545 GH18_3CO4_chitinase Th 20.6 2.5E+02 0.0053 27.6 6.2 81 62-150 50-133 (253)
88 CHL00041 rps11 ribosomal prote 20.6 2E+02 0.0044 25.3 4.9 36 40-75 63-103 (116)
89 PF02579 Nitro_FeMo-Co: Dinitr 20.4 2.4E+02 0.0052 22.6 5.2 44 39-83 42-85 (94)
90 COG0807 RibA GTP cyclohydrolas 20.3 1.8E+02 0.0039 28.0 4.9 39 43-81 133-171 (193)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.2e-83 Score=649.77 Aligned_cols=307 Identities=46% Similarity=0.823 Sum_probs=252.4
Q ss_pred eeEEeCCCCCCCCChHHHHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHhhhc
Q 011636 25 LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQH 104 (480)
Q Consensus 25 ~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v~~y 104 (480)
||||||+.|+|+|+|++|+++||+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCCceEEeeeeccccccccCCCCCCcccccchHHH
Q 011636 105 IRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDL 184 (480)
Q Consensus 105 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~~s~p~Ps~g~f~~~~~~~ 184 (480)
+|. ++|++|+||||++... ....|+|||+++|++|++.||+++|||+|+++++++.++|| ||.|.|++++.+.
T Consensus 81 ~~~--~~i~~i~VGnEv~~~~----~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~P-PS~g~F~~~~~~~ 153 (310)
T PF00332_consen 81 LPA--VNIRYIAVGNEVLTGT----DNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFP-PSAGVFRSDIASV 153 (310)
T ss_dssp TTT--SEEEEEEEEES-TCCS----GGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SS-GGG-EESHHHHHH
T ss_pred Ccc--cceeeeecccccccCc----cceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCC-CccCcccccchhh
Confidence 998 9999999999999542 12289999999999999999998999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhcCCCceeeccccccccCCCC-cCcccccccCCCccccCCCccchhhHHHHHHHHHHHHHhcCCCCCCEEE
Q 011636 185 MLAIVKFLSDNGGPFTVNIYPFISLYIDSN-FPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIII 263 (480)
Q Consensus 185 l~~~ldfL~~~~spf~vNiYPyf~~~~~~~-i~l~~AlF~~~~~~~~d~~~~Y~nlfda~~Dav~~a~~~~g~~~~~vvV 263 (480)
|+++++||..++||||+|+||||+|.++|. ++|+||+|+++..++ |++.+|+||||+|+|++++||+++|+++++|+|
T Consensus 154 ~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv 232 (310)
T PF00332_consen 154 MDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVV 232 (310)
T ss_dssp HHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEE
T ss_pred hhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEE
Confidence 999999999999999999999999999986 999999999998877 778899999999999999999999999999999
Q ss_pred eecccCCCCCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCC-CccEEEeecccccccCCCCCC-ccceeEeeecCCCceee
Q 011636 264 GEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPG-PIDAYLFSLIDEDAKSVDPGN-FERHWGIFTYDGRPKYQ 341 (480)
Q Consensus 264 sETGWPs~G~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~-~i~~yiF~~fdE~~K~~~pG~-~E~~wGLf~~d~~~ky~ 341 (480)
+||||||+|+..|+++||+.|++++++|+. +|||+||+ ++++||||+|||+|| +|. +|||||||++||++||+
T Consensus 233 ~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K---~~~~~E~~wGlf~~d~~~ky~ 307 (310)
T PF00332_consen 233 GETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWK---PGPEVERHWGLFYPDGTPKYD 307 (310)
T ss_dssp EEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTS---SSSGGGGG--SB-TTSSBSS-
T ss_pred eccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCC---CCCcccceeeeECCCCCeecC
Confidence 999999999988999999999999999997 79999998 999999999999999 566 99999999999999999
Q ss_pred ccC
Q 011636 342 LNL 344 (480)
Q Consensus 342 l~~ 344 (480)
++|
T Consensus 308 ~~f 310 (310)
T PF00332_consen 308 LDF 310 (310)
T ss_dssp ---
T ss_pred CCC
Confidence 986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-39 Score=309.60 Aligned_cols=248 Identities=20% Similarity=0.254 Sum_probs=191.0
Q ss_pred CCceeEEeCCCCCC--CCChHHHHHHHHhC-CC-CEEEEecCCc----hHHHHhhhCCCEEEEecCCCchhHHHhhHHHH
Q 011636 22 VSGLGANWGTQASH--PLPPETVVNLLRDN-GF-QKAKLFDADY----GTLRALGKSGIEVMVGIPNDMLASLASSMKTA 93 (480)
Q Consensus 22 ~~~~GvnYg~~~~n--~ps~~~vv~llk~~-~i-~~VRiY~~d~----~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a 93 (480)
-++.+++||++.++ +++.+++...|..+ .+ ..||+|+.|| ++++|+...|++|+||||..+..+-+ .
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~--~--- 117 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA--V--- 117 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh--H---
Confidence 45789999999875 89999987666542 23 3999999998 68899999999999999986532221 1
Q ss_pred HHHHHHHhhhcccCCcceEEEEEecccccccCCCcch-hhhHHHHHHHHHHHHHHcCCCCceEEeeeeccccccccCCCC
Q 011636 94 EKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSF-LRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVP 172 (480)
Q Consensus 94 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~~s~p~P 172 (480)
+.-+...+.++..+ +.|++|.||||+|++ .+. +.+|..+|.++|.+|+++||. .||+|++++.++.+.
T Consensus 118 ~~til~ay~~~~~~--d~v~~v~VGnEal~r---~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n---- 186 (305)
T COG5309 118 EKTILSAYLPYNGW--DDVTTVTVGNEALNR---NDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN---- 186 (305)
T ss_pred HHHHHHHHhccCCC--CceEEEEechhhhhc---CCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC----
Confidence 11344556666554 899999999999965 344 899999999999999999996 689999999887652
Q ss_pred CCcccccchHHHHHHHHHHHHhcCCCceeeccccccccCCCCcCcccccccCCCccccCCCccchhhHHHHHHHHHHHHH
Q 011636 173 SGGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQ 252 (480)
Q Consensus 173 s~g~f~~~~~~~l~~~ldfL~~~~spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y~nlfda~~Dav~~a~~ 252 (480)
+.+++..||+ |+|.||||+...- .++ .+ .++-.|++-++.+.
T Consensus 187 ----------p~l~~~SDfi-------a~N~~aYwd~~~~----------------a~~---~~-~f~~~q~e~vqsa~- 228 (305)
T COG5309 187 ----------PELCQASDFI-------AANAHAYWDGQTV----------------ANA---AG-TFLLEQLERVQSAC- 228 (305)
T ss_pred ----------hHHhhhhhhh-------hcccchhccccch----------------hhh---hh-HHHHHHHHHHHHhc-
Confidence 2356666776 6999999974211 111 12 23334566665552
Q ss_pred hcCCCCCCEEEeecccCCCCCCC----CCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeecccccccCCCCCC--cc
Q 011636 253 KNGYGNLPIIIGEIGWPTDGDRN----ANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPGN--FE 326 (480)
Q Consensus 253 ~~g~~~~~vvVsETGWPs~G~~~----as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~~K~~~pG~--~E 326 (480)
| .+++++|+||||||+|..+ ||++||..|.+++++.+++. ++++|+||+|||+||. +|. +|
T Consensus 229 --g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~--------G~d~fvfeAFdd~WK~--~~~y~VE 295 (305)
T COG5309 229 --G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC--------GYDVFVFEAFDDDWKA--DGSYGVE 295 (305)
T ss_pred --C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc--------CccEEEeeeccccccC--ccccchh
Confidence 2 3599999999999999875 99999999999999877543 8999999999999996 554 99
Q ss_pred ceeEeeecCC
Q 011636 327 RHWGIFTYDG 336 (480)
Q Consensus 327 ~~wGLf~~d~ 336 (480)
+|||+++.|+
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=2.4e-28 Score=202.83 Aligned_cols=83 Identities=49% Similarity=0.929 Sum_probs=80.9
Q ss_pred eeEEecCCCCCCccchhhhhhcccCc-ccCCccCCCCCCCC-CCcchhhhHHHHHHHHhcCCCCCCCCCCCceeEEecCC
Q 011636 364 KWCVMKPSARLDDPQVAPSVSYACGL-ADCTSLGYGTSCGN-LDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADP 441 (480)
Q Consensus 364 ~wCvak~~~~~~~~~l~~~ld~aCg~-~dC~~I~~~g~c~~-~~~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~i~~~~p 441 (480)
+|||+|+++ ++++||++||||||+ +||++|++||+||+ |++++|||||||+|||++++.+++|||+|+|+++++||
T Consensus 1 ~wCv~~~~~--~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~p 78 (85)
T smart00768 1 LWCVAKPDA--DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDP 78 (85)
T ss_pred CccccCCCC--CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCC
Confidence 599999999 999999999999999 99999999999999 99999999999999999999999999999999999999
Q ss_pred CCCceee
Q 011636 442 SVGSCIF 448 (480)
Q Consensus 442 s~~~C~~ 448 (480)
|+++|+|
T Consensus 79 s~~~C~~ 85 (85)
T smart00768 79 STGSCKF 85 (85)
T ss_pred CCCccCC
Confidence 9999976
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.90 E-value=2.3e-23 Score=208.21 Aligned_cols=238 Identities=21% Similarity=0.377 Sum_probs=132.4
Q ss_pred eeEEeCCCCC-------CCCC-h---HHHHHHHHhCCCCEEEEecCCc-----hHHHHhhhCCCEEEEecCCCchhHHHh
Q 011636 25 LGANWGTQAS-------HPLP-P---ETVVNLLRDNGFQKAKLFDADY-----GTLRALGKSGIEVMVGIPNDMLASLAS 88 (480)
Q Consensus 25 ~GvnYg~~~~-------n~ps-~---~~vv~llk~~~i~~VRiY~~d~-----~vL~A~~~tgi~V~lgv~n~~~~~la~ 88 (480)
.||.|-+-++ ++.+ + .+.+++||++|++.||+|+.|| .||++|++.||+|+++|..+ ..+|.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 5999998766 2211 2 3467899999999999999997 69999999999999999987 335544
Q ss_pred hHHHHHHHHHHH-------hhhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCCceEEeeeec
Q 011636 89 SMKTAEKWVSQN-------VSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLN 161 (480)
Q Consensus 89 ~~~~a~~Wv~~~-------v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~~IkVst~~~ 161 (480)
... +..|-... |..+. ..+|+.++++||||++...+...++.+++++|++|+++++.++ |+|+|+++.+
T Consensus 109 ~~P-~~sw~~~l~~~~~~vid~fa--~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaa 184 (314)
T PF03198_consen 109 SDP-APSWNTDLLDRYFAVIDAFA--KYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAA 184 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHT--T-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-
T ss_pred CCC-cCCCCHHHHHHHHHHHHHhc--cCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEcc
Confidence 321 23453222 22221 1289999999999997654555689999999999999999999 5799999865
Q ss_pred cccccccCCCCCCcccccchHHHHHHHHHHHHhcC-----CCceeeccccccccCCCCcCcccccccCCCccccCCCccc
Q 011636 162 ADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNG-----GPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATY 236 (480)
Q Consensus 162 ~~vl~~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~-----spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y 236 (480)
.+. .+ ..++.+||.|.. |.|++|.|.|+. +.+ |+. .+|
T Consensus 185 D~~-----------~~-------r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg---~St-------f~~---------SGy 227 (314)
T PF03198_consen 185 DDA-----------EI-------RQDLANYLNCGDDDERIDFFGLNSYEWCG---DST-------FET---------SGY 227 (314)
T ss_dssp --T-----------TT-------HHHHHHHTTBTT-----S-EEEEE----S---S---------HHH---------HSH
T ss_pred CCh-----------hH-------HHHHHHHhcCCCcccccceeeeccceecC---CCc-------ccc---------ccH
Confidence 311 12 236778888764 789999997763 332 332 134
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCEEEeecccCCCCCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeeccccc
Q 011636 237 YNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDED 316 (480)
Q Consensus 237 ~nlfda~~Dav~~a~~~~g~~~~~vvVsETGWPs~G~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~ 316 (480)
..+. ..+ .++ .+||+++|.||.+.. .|.|.+ +..+-+..+|....|++ +||+|.|
T Consensus 228 ~~l~--------~~f--~~y-~vPvffSEyGCn~~~--------pR~f~e--v~aly~~~Mt~v~SGGi---vYEy~~e- 282 (314)
T PF03198_consen 228 DRLT--------KEF--SNY-SVPVFFSEYGCNTVT--------PRTFTE--VPALYSPEMTDVWSGGI---VYEYFQE- 282 (314)
T ss_dssp HHHH--------HHH--TT--SS-EEEEEE---SSS--------S---TH--HHHHTSHHHHTTEEEEE---ES-SB---
T ss_pred HHHH--------HHh--hCC-CCCeEEcccCCCCCC--------CccchH--hHHhhCccchhheeceE---EEEEecc-
Confidence 4332 222 344 699999999998643 255554 44454444566666777 8999988
Q ss_pred ccCCCCCCccceeEeeecCCCc
Q 011636 317 AKSVDPGNFERHWGIFTYDGRP 338 (480)
Q Consensus 317 ~K~~~pG~~E~~wGLf~~d~~~ 338 (480)
+++|||+..++..
T Consensus 283 ---------~n~yGlV~~~~~~ 295 (314)
T PF03198_consen 283 ---------ANNYGLVEISGDG 295 (314)
T ss_dssp ---------SSS--SEEE-TTS
T ss_pred ---------CCceEEEEEcCCC
Confidence 4889999977654
No 5
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.84 E-value=1.4e-21 Score=159.48 Aligned_cols=70 Identities=39% Similarity=0.788 Sum_probs=59.9
Q ss_pred eeEEecCCCCCCccchhhhhhcccCc--ccCCccCCCCCC-----CC-CCcchhhhHHHHHHHHhcCCCCCCCCCCCcee
Q 011636 364 KWCVMKPSARLDDPQVAPSVSYACGL--ADCTSLGYGTSC-----GN-LDARGNISYAFNSYYQKNNQLDTACKFPNLSM 435 (480)
Q Consensus 364 ~wCvak~~~~~~~~~l~~~ld~aCg~--~dC~~I~~~g~c-----~~-~~~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~ 435 (480)
+|||+|+++ ++++|+++|||||++ +||++|+++|+. |+ |+.++|||||||+|||++++.+++|||+|+||
T Consensus 1 l~Cv~~~~~--~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA--DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS---HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC--CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 999999999999999 999999999994 44 77799999999999999999999999999996
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.99 E-value=8e-08 Score=98.78 Aligned_cols=247 Identities=17% Similarity=0.242 Sum_probs=126.4
Q ss_pred hHHHHHHHHhCCCCEEEEec-CCc------------hHHHHhhhCCCEEEEecCCCc---------hh------HHHhhH
Q 011636 39 PETVVNLLRDNGFQKAKLFD-ADY------------GTLRALGKSGIEVMVGIPNDM---------LA------SLASSM 90 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRiY~-~d~------------~vL~A~~~tgi~V~lgv~n~~---------~~------~la~~~ 90 (480)
..++.++||+.|++.||+== .|| ...+.+++.|++|+|..--+| ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999998877642 121 244556789999999987532 10 112212
Q ss_pred HHHHHHHHHHhhhcccCCcceEEEEEeccccccc--C--CCcchhhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccc
Q 011636 91 KTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLE--T--YNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYE 166 (480)
Q Consensus 91 ~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~--~--~~~~~~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~ 166 (480)
++...+.++-+... ...+..+..|-||||+-.. . .+..-.+.+...++.-.+++|+.+- ++||-.-..
T Consensus 106 ~~v~~yT~~vl~~l-~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~----- 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQAL-KAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA----- 177 (332)
T ss_dssp HHHHHHHHHHHHHH-HHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-----
T ss_pred HHHHHHHHHHHHHH-HHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-----
Confidence 33344555444333 3345788999999997532 1 1112245566666667777777553 466543221
Q ss_pred ccCCCCCCcccccchHHHHHHHHHHHHhcC---CCceeeccccccccCCCCcCcccccccCCCccccCCCccchhhHHHH
Q 011636 167 SASGVPSGGDFRADIHDLMLAIVKFLSDNG---GPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATYYNMFDAN 243 (480)
Q Consensus 167 ~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~---spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y~nlfda~ 243 (480)
+ |.. ...+.-..+-|...+ |.++++.||||.. . -+.+...
T Consensus 178 ~----~~~-------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~----~----------------------l~~l~~~ 220 (332)
T PF07745_consen 178 N----GGD-------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG----T----------------------LEDLKNN 220 (332)
T ss_dssp -----TTS-------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST---------------------------HHHHHHH
T ss_pred C----CCc-------hHHHHHHHHHHHhcCCCcceEEEecCCCCcc----h----------------------HHHHHHH
Confidence 1 111 122334444454444 7889999999852 0 0112222
Q ss_pred HHHHHHHHHhcCCCCCCEEEeecccCCCC---C--C------------CCCHHHHHHHHHHHHHHhhCCCCCCCCCCCcc
Q 011636 244 HDTLVRALQKNGYGNLPIIIGEIGWPTDG---D--R------------NANNEYARRFNQGFMSHISGGKGTPMRPGPID 306 (480)
Q Consensus 244 ~Dav~~a~~~~g~~~~~vvVsETGWPs~G---~--~------------~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~ 306 (480)
++.+ .++ | +|+|+|.|||||..- + . .+|++.|+.|++++++.+.+..+ .+++-
T Consensus 221 l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~----~~g~G 290 (332)
T PF07745_consen 221 LNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN----GGGLG 290 (332)
T ss_dssp HHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS------TTEEE
T ss_pred HHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc----CCeEE
Confidence 3222 233 3 589999999999971 1 1 16899999999999998876311 01455
Q ss_pred EEEeecc-cccc---cCCCCCC-ccceeEeeecCCCceeec
Q 011636 307 AYLFSLI-DEDA---KSVDPGN-FERHWGIFTYDGRPKYQL 342 (480)
Q Consensus 307 ~yiF~~f-dE~~---K~~~pG~-~E~~wGLf~~d~~~ky~l 342 (480)
+|+-|.- -..+ +. ..|. .|+. +||+.+|++--.|
T Consensus 291 vfYWeP~w~~~~~~~~~-~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDW-GGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEE-TT-GGGTTHHHH-TTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEeeccccccCCccccc-CCCCCcccc-ccCCCCCCCchHh
Confidence 5555431 1111 10 0343 4444 8888888764333
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=2.5e-05 Score=78.16 Aligned_cols=206 Identities=16% Similarity=0.269 Sum_probs=110.8
Q ss_pred hHHHHHHHHhCCCCEEEE--e----cCCc--------------hHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHH-
Q 011636 39 PETVVNLLRDNGFQKAKL--F----DADY--------------GTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWV- 97 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRi--Y----~~d~--------------~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv- 97 (480)
.++..+.||+.|++.||+ | |.|. ++-+-+.+.|+||++..--+|-=+-...+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 356788999999987766 3 3331 244555779999999987654100000011112232
Q ss_pred ------HHHhhhc-------ccCCcceEEEEEeccccccc--CCCcch--hhhHHHHHHHHHHHHHHcCCCCceEEeeee
Q 011636 98 ------SQNVSQH-------IRKNNVNIRYVAVGNEPFLE--TYNGSF--LRTTFPALRNVQAALIKAGLSNQVKVTVPL 160 (480)
Q Consensus 98 ------~~~v~~y-------~p~~~~~I~~I~VGNEvl~~--~~~~~~--~~~ll~am~~vk~aL~~~gl~~~IkVst~~ 160 (480)
++.|-.| ..+.+..+..+-||||.-.. +..++. ...+-..++.-.++++... ..|||---.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEe
Confidence 2222111 22345778889999997521 111221 2333334444444554433 357765432
Q ss_pred ccccccccCCCCCCcccccchHHHHHHHHHHHHhcC---CCceeeccccccccCCCCcCcccccccCCCccccCCCccch
Q 011636 161 NADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNG---GPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATYY 237 (480)
Q Consensus 161 ~~~vl~~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~---spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y~ 237 (480)
+ +.-. + +.|| -+.|=|.+.+ |.|+.-.||||... .. .++ +
T Consensus 223 a-----~g~~-n--~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgt------------------l~--nL~-~ 265 (403)
T COG3867 223 A-----EGEN-N--SLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGT------------------LN--NLT-T 265 (403)
T ss_pred c-----CCCC-C--chhh--------HHHHHHHHcCCCceEEeeeccccccCc------------------HH--HHH-h
Confidence 2 1110 2 2232 2333444444 67789999998531 00 111 1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCEEEeeccc--------------CCCCCCC---CCHHHHHHHHHHHHHHhhC
Q 011636 238 NMFDANHDTLVRALQKNGYGNLPIIIGEIGW--------------PTDGDRN---ANNEYARRFNQGFMSHISG 294 (480)
Q Consensus 238 nlfda~~Dav~~a~~~~g~~~~~vvVsETGW--------------Ps~G~~~---as~~na~~y~~~lv~~~~s 294 (480)
|| +.+.. + | +|.|+|.||+. |+.+... .+++.|++|.+++++.+..
T Consensus 266 nl-----~dia~---r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 266 NL-----NDIAS---R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred HH-----HHHHH---H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 22 22211 1 2 68999999998 5544321 6888999999999998865
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.17 E-value=0.00015 Score=80.66 Aligned_cols=253 Identities=19% Similarity=0.168 Sum_probs=138.5
Q ss_pred eeEEeCCCCC---CCCChH---HHHHHHHhCCCCEEEEec--CCchHHHHhhhCCCEEEEecCCCc--------------
Q 011636 25 LGANWGTQAS---HPLPPE---TVVNLLRDNGFQKAKLFD--ADYGTLRALGKSGIEVMVGIPNDM-------------- 82 (480)
Q Consensus 25 ~GvnYg~~~~---n~ps~~---~vv~llk~~~i~~VRiY~--~d~~vL~A~~~tgi~V~lgv~n~~-------------- 82 (480)
.|+|+-.... .-++.+ +.++++|+.|+|.||+-. .++..+.++.+.||.|+.-++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4888743211 123333 346789999999999933 245899999999999997664310
Q ss_pred -hhHHH------hhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCCceE
Q 011636 83 -LASLA------SSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVK 155 (480)
Q Consensus 83 -~~~la------~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~~Ik 155 (480)
.+... ...++..+.+++.|..+.- ...|..-.+|||.-.. . ......++.+.+.+++..=++ +
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~N--HPSIi~Ws~gNE~~~~---~---~~~~~~~~~l~~~~k~~DptR--~ 444 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKN--HPSVVMWSIANEPASR---E---QGAREYFAPLAELTRKLDPTR--P 444 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccC--CceEEEEeeccCCCcc---c---hhHHHHHHHHHHHHHhhCCCC--c
Confidence 00010 0112223335556655532 2578899999997421 1 122344556666666655433 3
Q ss_pred EeeeeccccccccCCCCCCcccccchHHHHHHHHHHHHhcCCCceeeccccccccCCCCcCcccccccCCCccccCCCcc
Q 011636 156 VTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGAT 235 (480)
Q Consensus 156 Vst~~~~~vl~~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~ 235 (480)
|+.+..+. . . |.. + .+.+++|++ +.|.|+=|- .+.. . . ..
T Consensus 445 vt~~~~~~---~-~--~~~----~----~~~~~~Dv~-------~~N~Y~~wy--~~~~----------~---~----~~ 484 (604)
T PRK10150 445 VTCVNVMF---A-T--PDT----D----TVSDLVDVL-------CLNRYYGWY--VDSG----------D---L----ET 484 (604)
T ss_pred eEEEeccc---C-C--ccc----c----cccCcccEE-------EEcccceec--CCCC----------C---H----HH
Confidence 55553211 0 0 110 0 112344554 588875321 1110 0 0 00
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCEEEeecccCCC----C--CCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEE
Q 011636 236 YYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTD----G--DRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYL 309 (480)
Q Consensus 236 Y~nlfda~~Dav~~a~~~~g~~~~~vvVsETGWPs~----G--~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yi 309 (480)
....++.+++.. .++ + ++|++++|+|+.+. + ...-+.+.|..|++...+.+.+ +|.-.-.|+
T Consensus 485 ~~~~~~~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~~~G~~i 552 (604)
T PRK10150 485 AEKVLEKELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPAVVGEQV 552 (604)
T ss_pred HHHHHHHHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCceEEEEE
Confidence 112222222211 111 2 79999999997552 1 1124788888888877766543 455556789
Q ss_pred eecccccccCCCCCC---ccceeEeeecCCCceeec
Q 011636 310 FSLIDEDAKSVDPGN---FERHWGIFTYDGRPKYQL 342 (480)
Q Consensus 310 F~~fdE~~K~~~pG~---~E~~wGLf~~d~~~ky~l 342 (480)
..+||-.... |. -..+.||++.||+||-..
T Consensus 553 W~~~D~~~~~---g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 553 WNFADFATSQ---GILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred EeeeccCCCC---CCcccCCCcceeEcCCCCChHHH
Confidence 9999954431 21 235789999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.98 E-value=0.00083 Score=66.17 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=79.0
Q ss_pred ceeEEeCCCCCCCCChHHHHHHHHhCCCCEEEEecC-------C------c-------hHHHHhhhCCCEEEEecCCCc-
Q 011636 24 GLGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDA-------D------Y-------GTLRALGKSGIEVMVGIPNDM- 82 (480)
Q Consensus 24 ~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRiY~~-------d------~-------~vL~A~~~tgi~V~lgv~n~~- 82 (480)
..|+|-. ..+.. ..++.++.+++.|++.|||.=. + . .+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466655 22112 6788899999999999999732 1 1 478999999999999998740
Q ss_pred ---hhHHHhhHHHHHHHHHH---HhhhcccCCcceEEEEEecccccccCCCc----chhhhHHHHHHHHHHHHHHcCCCC
Q 011636 83 ---LASLASSMKTAEKWVSQ---NVSQHIRKNNVNIRYVAVGNEPFLETYNG----SFLRTTFPALRNVQAALIKAGLSN 152 (480)
Q Consensus 83 ---~~~la~~~~~a~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~~----~~~~~ll~am~~vk~aL~~~gl~~ 152 (480)
............+|+++ .+...+.. ...|.++=+.||+....... .....+.+.++.+.++|++.+-..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKD-NPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT-TTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCC-CCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 00111111222333322 23333321 14677999999998642110 013667888999999999998754
Q ss_pred ce
Q 011636 153 QV 154 (480)
Q Consensus 153 ~I 154 (480)
.|
T Consensus 167 ~i 168 (281)
T PF00150_consen 167 LI 168 (281)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.35 E-value=0.035 Score=55.12 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCCCEEEeecccCCCCCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeecccc-cccCCCCCCc
Q 011636 247 LVRALQKNGYGNLPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDE-DAKSVDPGNF 325 (480)
Q Consensus 247 v~~a~~~~g~~~~~vvVsETGWPs~G~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE-~~K~~~pG~~ 325 (480)
+...|++++-.++||.|||++-|..+ +.+.|+.+++++++.+.+. |.....++..+.|. .|. ++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~v~gi~~Wg~~d~~~W~---~~-- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PAVTGVTVWGVTDKYSWL---DG-- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CCeeEEEEeCCccCCccc---CC--
Confidence 33444444434799999999998753 3478899999999888764 22233445565553 354 22
Q ss_pred cceeEeeecCCCceee
Q 011636 326 ERHWGIFTYDGRPKYQ 341 (480)
Q Consensus 326 E~~wGLf~~d~~~ky~ 341 (480)
.+-|||+.|+++|-.
T Consensus 236 -~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 -GAPLLFDANYQPKPA 250 (254)
T ss_pred -CCceeECCCCCCChh
Confidence 467999999988743
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.29 E-value=0.24 Score=48.85 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=45.6
Q ss_pred CCEEEeecccCCCCCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeecccccccCCCCCCccceeEeeecCCCc
Q 011636 259 LPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRP 338 (480)
Q Consensus 259 ~~vvVsETGWPs~G~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~~K~~~pG~~E~~wGLf~~d~~~ 338 (480)
+||+|||.|+.. +....+.+.++.|++..+..+.+. +.--.++||...+ .+. ....+-.|++.+|++
T Consensus 166 kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~VeryawF~~~~-~~~-----~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 166 KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PYVERYAWFGFMN-DGS-----GVNPNSALLDADGSL 232 (239)
T ss_pred CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CCeeEEEeccccc-ccC-----CCccccccccCCCCc
Confidence 999999999876 334478899999999999988753 3233667777222 222 134555677777643
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=95.95 E-value=2.3 Score=45.66 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCEEEEe-------c-----CCc-------hHHHHhhhCCCEEEEecCCCch
Q 011636 40 ETVVNLLRDNGFQKAKLF-------D-----ADY-------GTLRALGKSGIEVMVGIPNDML 83 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY-------~-----~d~-------~vL~A~~~tgi~V~lgv~n~~~ 83 (480)
++.+++|+++|++++|+= - .|. .++..+.+.||+++|.+.--++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 678999999999999861 1 121 5899999999999999965443
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=94.78 E-value=0.17 Score=54.59 Aligned_cols=278 Identities=20% Similarity=0.289 Sum_probs=125.6
Q ss_pred HHHHHHHHhCCCCEEEEec------C-------Cc-------hHHHHhhhCCCEEEEecCCCchhHHHh------hHHHH
Q 011636 40 ETVVNLLRDNGFQKAKLFD------A-------DY-------GTLRALGKSGIEVMVGIPNDMLASLAS------SMKTA 93 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~------~-------d~-------~vL~A~~~tgi~V~lgv~n~~~~~la~------~~~~a 93 (480)
+|.+++||++|++..|.== . |+ .++..|...||+.+|.+.--+++..-. +++ .
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~-~ 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRE-T 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTH-H
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHH-H
Confidence 6789999999999998731 1 11 589999999999999998655443211 111 1
Q ss_pred HHHHHHHhhhcccCCcceEEEEEecccccccC---C------Cc--c------hhhhHHHHHHHHHHHHHHcCCCCceEE
Q 011636 94 EKWVSQNVSQHIRKNNVNIRYVAVGNEPFLET---Y------NG--S------FLRTTFPALRNVQAALIKAGLSNQVKV 156 (480)
Q Consensus 94 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~---~------~~--~------~~~~ll~am~~vk~aL~~~gl~~~IkV 156 (480)
..|..+...--....++.|..-+.=||+..-. | .+ + ....++-|-....+++++.+. +.+|
T Consensus 140 ~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~~I 217 (455)
T PF00232_consen 140 VDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DGKI 217 (455)
T ss_dssp HHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TSEE
T ss_pred HHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ceEE
Confidence 22222211111111236788888889986421 0 00 0 012244444445555666664 3567
Q ss_pred eeeeccccccccCCCC-CC---------------------cccccchHHHH----------HHHHHHHHhcCCCceeecc
Q 011636 157 TVPLNADVYESASGVP-SG---------------------GDFRADIHDLM----------LAIVKFLSDNGGPFTVNIY 204 (480)
Q Consensus 157 st~~~~~vl~~s~p~P-s~---------------------g~f~~~~~~~l----------~~~ldfL~~~~spf~vNiY 204 (480)
+..++.....-..+.| .. |.|...+...+ .+-+..|..+.|++++|-|
T Consensus 218 Gi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYY 297 (455)
T PF00232_consen 218 GIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYY 297 (455)
T ss_dssp EEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEES
T ss_pred eccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccc
Confidence 7776654322100001 10 00000000000 0112233455799999988
Q ss_pred ccccccCCCC--cCcccc---cccCC---CccccCCCc-cchhhHHHHHHHHHHHHHhcCCCCCCEEEeecccCCCCCCC
Q 011636 205 PFISLYIDSN--FPVEYA---FFDGN---SSPINDGGA-TYYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDRN 275 (480)
Q Consensus 205 Pyf~~~~~~~--i~l~~A---lF~~~---~~~~~d~~~-~Y~nlfda~~Dav~~a~~~~g~~~~~vvVsETGWPs~G~~~ 275 (480)
.=.--...+. ....+. .+... .....+.+. .|- ....+.+...=++ |+++||+|+|.|++......
T Consensus 298 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P---~Gl~~~L~~l~~~--Y~~~pI~ITENG~~~~~~~~ 372 (455)
T PF00232_consen 298 TSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYP---EGLRDVLRYLKDR--YGNPPIYITENGIGDPDEVD 372 (455)
T ss_dssp EEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBET---HHHHHHHHHHHHH--HTSSEEEEEEE---EETTCT
T ss_pred cceeeccCccccccccccCCccccccccccccccccCccccc---chHhhhhhhhccc--cCCCcEEEeccccccccccc
Confidence 5322222221 111111 00000 000011121 111 1112222222122 56799999999998765421
Q ss_pred -------CCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeeccccc-ccCCCCCCccceeEeeecC
Q 011636 276 -------ANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDED-AKSVDPGNFERHWGIFTYD 335 (480)
Q Consensus 276 -------as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~-~K~~~pG~~E~~wGLf~~d 335 (480)
--+..-+.+++.+.+.+. .|.++ .-+|..++.|-- |. .| ..+.|||++.|
T Consensus 373 ~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V----~GY~~WSl~Dn~Ew~---~G-y~~rfGl~~VD 430 (455)
T PF00232_consen 373 DGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV----RGYFAWSLLDNFEWA---EG-YKKRFGLVYVD 430 (455)
T ss_dssp TSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE----EEEEEETSB---BGG---GG-GGSE--SEEEE
T ss_pred ccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe----eeEeeeccccccccc---cC-ccCccCceEEc
Confidence 222334555555555553 24332 256777888742 33 12 78999999998
No 14
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=94.73 E-value=0.36 Score=48.83 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=56.1
Q ss_pred ceeEEeCCCCCC---CCChHH---HHHHHHhCCCCEEEEecC--CchHHHHhhhCCCEEEEecCCCch---hHH------
Q 011636 24 GLGANWGTQASH---PLPPET---VVNLLRDNGFQKAKLFDA--DYGTLRALGKSGIEVMVGIPNDML---ASL------ 86 (480)
Q Consensus 24 ~~GvnYg~~~~n---~ps~~~---vv~llk~~~i~~VRiY~~--d~~vL~A~~~tgi~V~lgv~n~~~---~~l------ 86 (480)
..|||+...... .++.+. .+.++|+.|+|.||+... ++..+.++.+.||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 459998864322 234433 356789999999999643 458999999999999988765110 000
Q ss_pred H---hhHHHHHHHHHHHhhhcccCCcceEEEEEecccc
Q 011636 87 A---SSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEP 121 (480)
Q Consensus 87 a---~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEv 121 (480)
. ...+...+.+++.|..+.- ...|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~N--HPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRN--HPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcC--cCchheeecCccC
Confidence 0 1122334456666665532 2568888999998
No 15
>PLN02814 beta-glucosidase
Probab=93.53 E-value=6 Score=43.49 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCc-------hHHHHhhhCCCEEEEecCCCchhH
Q 011636 40 ETVVNLLRDNGFQKAKL-------FD-----ADY-------GTLRALGKSGIEVMVGIPNDMLAS 85 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~lgv~n~~~~~ 85 (480)
+|.++++|++|++.-|. += .|+ .++..+.+.||+-+|.+.--+++.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 67899999999887764 31 132 689999999999999998766554
No 16
>PLN02998 beta-glucosidase
Probab=88.97 E-value=40 Score=37.05 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCc-------hHHHHhhhCCCEEEEecCCCchhH
Q 011636 40 ETVVNLLRDNGFQKAKL-------FD-----ADY-------GTLRALGKSGIEVMVGIPNDMLAS 85 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~lgv~n~~~~~ 85 (480)
+|.++++|++|++.-|. += .|+ .++.++.+.||+-+|.+.--+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 67899999999888775 21 132 589999999999999998766543
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=88.63 E-value=2.2 Score=44.71 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCEEEEecC-----Cc-----------hHHHHhhhCCCEEEEecCCCchhHH-----------------
Q 011636 40 ETVVNLLRDNGFQKAKLFDA-----DY-----------GTLRALGKSGIEVMVGIPNDMLASL----------------- 86 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~~-----d~-----------~vL~A~~~tgi~V~lgv~n~~~~~l----------------- 86 (480)
++.++++|+.|++.|||-.. .| .+|..+++.||+|+|+++....+..
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 56788999999999998432 22 5888899999999999974311110
Q ss_pred ---------H----hhHHHHHHHHHHHhhhcccCCcceEEEEEecccccc
Q 011636 87 ---------A----SSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFL 123 (480)
Q Consensus 87 ---------a----~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~ 123 (480)
. .-.+.+.+.++..+..|-. ...|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~--~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGD--HPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccc--cceEEEEEeccccCc
Confidence 0 0022334444544455533 267999999999764
No 18
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=80.30 E-value=11 Score=39.37 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCCEEEEec-CCchHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCC
Q 011636 49 NGFQKAKLFD-ADYGTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYN 127 (480)
Q Consensus 49 ~~i~~VRiY~-~d~~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~ 127 (480)
..+++|-+|+ .|++++..+...|++|++..-.. .+.+ ++++.-.+++++ +..++.+ -...||-+==|-.... .
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~--~gfDGIdIDwE~p~~~-~ 127 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKS--QFMDGINIDIEQPITK-G 127 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHH--hCCCeEEEcccCCCCC-C
Confidence 3478899886 47799999999999999865332 2222 334433445444 3333333 2344555544433110 1
Q ss_pred cchhhhHHHHHHHHHHHHHHcCC
Q 011636 128 GSFLRTTFPALRNVQAALIKAGL 150 (480)
Q Consensus 128 ~~~~~~ll~am~~vk~aL~~~gl 150 (480)
..-...+..-|++++++|++.+.
T Consensus 128 ~~d~~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 128 SPEYYALTELVKETTKAFKKENP 150 (358)
T ss_pred cchHHHHHHHHHHHHHHHhhcCC
Confidence 11235677889999999998764
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=77.98 E-value=1.1e+02 Score=33.34 Aligned_cols=248 Identities=19% Similarity=0.215 Sum_probs=110.2
Q ss_pred HHHHhCCCCEEEEecC--C-------------c--------hHHHHhhhCCCEEEEecCCC--chhH-----H-------
Q 011636 44 NLLRDNGFQKAKLFDA--D-------------Y--------GTLRALGKSGIEVMVGIPND--MLAS-----L------- 86 (480)
Q Consensus 44 ~llk~~~i~~VRiY~~--d-------------~--------~vL~A~~~tgi~V~lgv~n~--~~~~-----l------- 86 (480)
.+.+..||+.||+... | . .++..+.+.||+-+|-+.-. .+.+ .
T Consensus 47 ~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 47 ELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S
T ss_pred HHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcC
Confidence 3334589999999752 1 0 48899999999977666421 1100 0
Q ss_pred -HhhHHHHHHHHH----HHhhhcccCCcceEE--EEEecccccccCCCc-chhhhHHHHHHHHHHHHHHcCCCCceEEee
Q 011636 87 -ASSMKTAEKWVS----QNVSQHIRKNNVNIR--YVAVGNEPFLETYNG-SFLRTTFPALRNVQAALIKAGLSNQVKVTV 158 (480)
Q Consensus 87 -a~~~~~a~~Wv~----~~v~~y~p~~~~~I~--~I~VGNEvl~~~~~~-~~~~~ll~am~~vk~aL~~~gl~~~IkVst 158 (480)
..+.+.-.+.|+ ..+.+|-. ..|. .+=|=||+=...... .....-....+.+.++|++.. ..+||+-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RYG~---~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRYGI---EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHHHH---HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhcCC---ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 011121122232 22333311 1111 466789964332111 112334566677778888776 4589998
Q ss_pred eeccccccccCCCCCCcccccchHHHHHHHHHHHHhcC---CCceeeccccccccCCCCcCcccccccCCCccccCCCcc
Q 011636 159 PLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNG---GPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGAT 235 (480)
Q Consensus 159 ~~~~~vl~~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~---spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~ 235 (480)
|... . + ....+...++|+...+ |++..+.||+=.... ....... .-..
T Consensus 202 p~~~----~-----~-------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~------------~~~~~~~-~~~~ 252 (486)
T PF01229_consen 202 PAFA----W-----A-------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAED------------INENMYE-RIED 252 (486)
T ss_dssp EEEE----T-----T--------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-------------SS-EEE-EB--
T ss_pred cccc----c-----c-------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccc------------cchhHHh-hhhh
Confidence 7110 0 0 0134566777877655 344566666421100 0000000 0000
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCEEEeecccCCCCCC-C---CCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEE--
Q 011636 236 YYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDR-N---ANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYL-- 309 (480)
Q Consensus 236 Y~nlfda~~Dav~~a~~~~g~~~~~vvVsETGWPs~G~~-~---as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yi-- 309 (480)
...+++ ++.-+...+...+++++++.++| |.+.-.. + -|.-+|+-..+++++.... .++.|-
T Consensus 253 ~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~---------~l~~~syw 320 (486)
T PF01229_consen 253 SRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA---------FLDSFSYW 320 (486)
T ss_dssp HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG---------T-SEEEES
T ss_pred HHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh---------hhhhhhcc
Confidence 111222 22223334555678899999999 7764333 1 4666677667767766532 122221
Q ss_pred -e-ecccccccCCCCCCccceeEeeecCCCce
Q 011636 310 -F-SLIDEDAKSVDPGNFERHWGIFTYDGRPK 339 (480)
Q Consensus 310 -F-~~fdE~~K~~~pG~~E~~wGLf~~d~~~k 339 (480)
| ..|.|.-.. +.++-.-|||++.+|-+|
T Consensus 321 t~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 321 TFSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp -SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred chhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 2 234443221 223667799999998554
No 20
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=75.30 E-value=12 Score=38.81 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=36.0
Q ss_pred HHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHh---hhcccCCcceEEEEEecccccccCCCcch-hhhHHHHH
Q 011636 63 TLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNV---SQHIRKNNVNIRYVAVGNEPFLETYNGSF-LRTTFPAL 138 (480)
Q Consensus 63 vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v---~~y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~ll~am 138 (480)
+-+-++.+|.+|+.|+.--.-.....+....-.|--+|- .+|....+-+|.+-=.|||.--..-.... +.++-.-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 445566799999999964211111122244567877664 44543333468888899997532211112 45555556
Q ss_pred HHHHHHHHH
Q 011636 139 RNVQAALIK 147 (480)
Q Consensus 139 ~~vk~aL~~ 147 (480)
..+|+.|++
T Consensus 194 ~~Lr~il~~ 202 (319)
T PF03662_consen 194 IQLRKILNE 202 (319)
T ss_dssp ---HHHHHH
T ss_pred HHHHHHHHH
Confidence 666776655
No 21
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.80 E-value=13 Score=39.22 Aligned_cols=59 Identities=17% Similarity=0.455 Sum_probs=41.2
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCCCEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHhhCCC
Q 011636 235 TYYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDRN------ANNEYARRFNQGFMSHISGGK 296 (480)
Q Consensus 235 ~Y~nlfda~~Dav~~a~~~~g~~~~~vvVsETGWPs~G~~~------as~~na~~y~~~lv~~~~s~~ 296 (480)
+|.|-|++-+.-.--..-..|++.++|+++ |||.|.-- .|...++.-++++++.+...+
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCC
Confidence 577777743332222234567788999887 99998752 777788888888888887653
No 22
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.26 E-value=50 Score=39.62 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=59.8
Q ss_pred ceeEEeCCCC---CCCCChHH---HHHHHHhCCCCEEEEec--CCchHHHHhhhCCCEEEEecCCCch-----hHHHhhH
Q 011636 24 GLGANWGTQA---SHPLPPET---VVNLLRDNGFQKAKLFD--ADYGTLRALGKSGIEVMVGIPNDML-----ASLASSM 90 (480)
Q Consensus 24 ~~GvnYg~~~---~n~ps~~~---vv~llk~~~i~~VRiY~--~d~~vL~A~~~tgi~V~lgv~n~~~-----~~la~~~ 90 (480)
..|+|+-..- ..-.++++ .++++|+.|+|.||+-. .++..++++.+.||.|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 3588876321 12244443 56788999999999943 2458999999999999988654210 0111111
Q ss_pred ---HHHHHHHHHHhhhcccCCcceEEEEEeccccc
Q 011636 91 ---KTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPF 122 (480)
Q Consensus 91 ---~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 122 (480)
++..+.+++.|.+.. +...|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~Rdr--NHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDR--NHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEeCccCCC
Confidence 222333455555542 225788999999963
No 23
>PRK09936 hypothetical protein; Provisional
Probab=66.77 E-value=46 Score=34.06 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=43.5
Q ss_pred CCceeEEeCCCCCC-CCChHHH---HHHHHhCCCCEEEE-e----cCC-----c---hHHHHhhhCCCEEEEecCCCc
Q 011636 22 VSGLGANWGTQASH-PLPPETV---VNLLRDNGFQKAKL-F----DAD-----Y---GTLRALGKSGIEVMVGIPNDM 82 (480)
Q Consensus 22 ~~~~GvnYg~~~~n-~ps~~~v---v~llk~~~i~~VRi-Y----~~d-----~---~vL~A~~~tgi~V~lgv~n~~ 82 (480)
-+--|+=|-+...+ --++++- .+.++..|++++=+ | +.| . ..|+++.+.||+|.||++-|.
T Consensus 19 ~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 19 QAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred hccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 34568889998766 4566654 45566789977654 2 222 2 688999999999999999864
No 24
>PLN03059 beta-galactosidase; Provisional
Probab=64.05 E-value=2.2e+02 Score=33.51 Aligned_cols=117 Identities=11% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCCEEEEecC---C-c--------------hHHHHhhhCCCEEEEecCC---------------CchhH--
Q 011636 41 TVVNLLRDNGFQKAKLFDA---D-Y--------------GTLRALGKSGIEVMVGIPN---------------DMLAS-- 85 (480)
Q Consensus 41 ~vv~llk~~~i~~VRiY~~---d-~--------------~vL~A~~~tgi~V~lgv~n---------------~~~~~-- 85 (480)
+.++.+|+.|++.|-+|-. . | .-++.+++.|++|+|=... -..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4566778899999999852 1 1 4678889999999985421 00111
Q ss_pred H-H---hhHHHHHHHHHHHhh-----hcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCCceEE
Q 011636 86 L-A---SSMKTAEKWVSQNVS-----QHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKV 156 (480)
Q Consensus 86 l-a---~~~~~a~~Wv~~~v~-----~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~~IkV 156 (480)
+ . .=.++.++|+...+. ++.-.++..|..+=|-||-= .+..+....-..+|+.+++.+++.|+. |+.
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG--s~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG--PVEWEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc--ceecccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 1 0 112345667655332 22223456888999999953 221111122367899999999999984 776
Q ss_pred eeeec
Q 011636 157 TVPLN 161 (480)
Q Consensus 157 st~~~ 161 (480)
-|.+.
T Consensus 219 ~t~dg 223 (840)
T PLN03059 219 VMCKQ 223 (840)
T ss_pred EECCC
Confidence 66554
No 25
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.44 E-value=8.3 Score=36.06 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 42 VVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 42 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
-+++|+.+|+++||+.+.+|.=+.++.+-||+|.=-+|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36899999999999999999999999999999875443
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.37 E-value=1.3e+02 Score=27.98 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCCEEEE----------ecCC------------c--hHHHHhhhCCCEEEEecCCCch----hHHHhhHHH
Q 011636 41 TVVNLLRDNGFQKAKL----------FDAD------------Y--GTLRALGKSGIEVMVGIPNDML----ASLASSMKT 92 (480)
Q Consensus 41 ~vv~llk~~~i~~VRi----------Y~~d------------~--~vL~A~~~tgi~V~lgv~n~~~----~~la~~~~~ 92 (480)
+..+.+|+.||+.|=+ |..+ + .+|+++.+.||+|++|++-+.. .+.......
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~ 103 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAER 103 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHH
Confidence 4566788889988722 2111 1 5889999999999999996521 111111111
Q ss_pred HHHHHHHHh-hhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcC
Q 011636 93 AEKWVSQNV-SQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAG 149 (480)
Q Consensus 93 a~~Wv~~~v-~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~g 149 (480)
+. -+.+-+ +.|... .-+.|--+-.|+-.. .....++.+.+.+.|++..
T Consensus 104 ~~-~v~~el~~~yg~h--~sf~GWYip~E~~~~------~~~~~~~~~~l~~~lk~~s 152 (166)
T PF14488_consen 104 NK-QVADELWQRYGHH--PSFYGWYIPYEIDDY------NWNAPERFALLGKYLKQIS 152 (166)
T ss_pred HH-HHHHHHHHHHcCC--CCCceEEEecccCCc------ccchHHHHHHHHHHHHHhC
Confidence 11 122222 234222 467788888887522 1223556667777776654
No 27
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.89 E-value=34 Score=26.31 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHhCCCCEEEEecCCc-----hHHHHhhhCCCEEEEecCC
Q 011636 36 PLPPETVVNLLRDNGFQKAKLFDADY-----GTLRALGKSGIEVMVGIPN 80 (480)
Q Consensus 36 ~ps~~~vv~llk~~~i~~VRiY~~d~-----~vL~A~~~tgi~V~lgv~n 80 (480)
.-++++.++..++.|++.|=+=|-+. ...+.+++.||+|+.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 34688999999999999998877662 4566677899999999853
No 28
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=55.82 E-value=24 Score=38.48 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=50.7
Q ss_pred hHHHHHHHHhCCCCEEEE-------ec-----CCc-------hHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHH
Q 011636 39 PETVVNLLRDNGFQKAKL-------FD-----ADY-------GTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQ 99 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~ 99 (480)
-+|.++++|++|++.-|. += .|+ .++.+|.+.||+-+|.+.--+++.--.+ .--|...
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~---~GGW~n~ 132 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHS---NGDWLNR 132 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHH---cCCCCCH
Confidence 478899999999888775 21 122 6899999999999999987665442111 1223321
Q ss_pred H----hhhc----ccCCcceEEEEEeccccc
Q 011636 100 N----VSQH----IRKNNVNIRYVAVGNEPF 122 (480)
Q Consensus 100 ~----v~~y----~p~~~~~I~~I~VGNEvl 122 (480)
. ...| ....++ |+.-+-=||+.
T Consensus 133 ~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~ 162 (469)
T PRK13511 133 ENIDHFVRYAEFCFEEFPE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCEEEEccchh
Confidence 1 1111 111246 88888888874
No 29
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=54.40 E-value=88 Score=32.36 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=40.5
Q ss_pred CCCEEEEecCC--C---chhHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccC-CCcchhhhHHHHHHHHHH
Q 011636 70 SGIEVMVGIPN--D---MLASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLET-YNGSFLRTTFPALRNVQA 143 (480)
Q Consensus 70 tgi~V~lgv~n--~---~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~-~~~~~~~~ll~am~~vk~ 143 (480)
.+++|++.|-. . ....+.++++.-.+.++ ++..++.+ -.+.||-+==|-.... ...+....++..|+++|+
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~--~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRK--YGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHH--cCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH
Confidence 58999988743 2 23445555443333433 34444433 2344444433322110 011224567889999999
Q ss_pred HHHHcC
Q 011636 144 ALIKAG 149 (480)
Q Consensus 144 aL~~~g 149 (480)
+|++.+
T Consensus 146 ~l~~~~ 151 (362)
T cd02872 146 AFEPEA 151 (362)
T ss_pred HHHhhC
Confidence 999883
No 30
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=54.35 E-value=76 Score=38.09 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=58.5
Q ss_pred ceeEEeCCCCC---CCCChH---HHHHHHHhCCCCEEEEecC--CchHHHHhhhCCCEEEEecCCCch--------hHHH
Q 011636 24 GLGANWGTQAS---HPLPPE---TVVNLLRDNGFQKAKLFDA--DYGTLRALGKSGIEVMVGIPNDML--------ASLA 87 (480)
Q Consensus 24 ~~GvnYg~~~~---n~ps~~---~vv~llk~~~i~~VRiY~~--d~~vL~A~~~tgi~V~lgv~n~~~--------~~la 87 (480)
..|+|+-.... ...+++ +.++++|+.|+|.||+-.. ++..+.++.+.||.|+--++.+.- ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35888754311 123443 3567889999999999642 347899999999999986532110 0111
Q ss_pred hhH---HHHHHHHHHHhhhcccCCcceEEEEEeccccc
Q 011636 88 SSM---KTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPF 122 (480)
Q Consensus 88 ~~~---~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 122 (480)
.++ ++..+.+++.|.+.. +...|..-++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~Rdr--NHPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQK--NHPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCcc
Confidence 111 122334555665542 225788889999974
No 31
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=53.55 E-value=38 Score=37.03 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=97.6
Q ss_pred HHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCCceEEeeeeccccccccCCCCC
Q 011636 94 EKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPS 173 (480)
Q Consensus 94 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~~s~p~Ps 173 (480)
.+.|.+.|.+|-.. ..|.+-..-||.+... ......++...+.+.++++..+=+.-|.|+-+.+. +..-- |-
T Consensus 123 kkyvedlVk~yk~~--ptI~gw~l~Ne~lv~~--p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~--py 194 (587)
T COG3934 123 KKYVEDLVKPYKLD--PTIAGWALRNEPLVEA--PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYA--PY 194 (587)
T ss_pred HHHHHHHhhhhccC--hHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccC--Cc
Confidence 34566667776433 5688888899977542 33467788899999999998876444555544332 21111 22
Q ss_pred CcccccchHHHHHHHHHHHHhcCCCceeeccccccccCCCCcCcccccccCCCccccCCCccchh-hHHHHHHHHHHHHH
Q 011636 174 GGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATYYN-MFDANHDTLVRALQ 252 (480)
Q Consensus 174 ~g~f~~~~~~~l~~~ldfL~~~~spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y~n-lfda~~Dav~~a~~ 252 (480)
.+.| .+||= .-++||+|. +++ |+-. +..|-. .+| ++ .
T Consensus 195 N~r~----------~vDya-------~~hLY~hyd--~sl-----~~r~----------s~~yg~~~l~--i~------~ 232 (587)
T COG3934 195 NARF----------YVDYA-------ANHLYRHYD--TSL-----VSRV----------STVYGKPYLD--IP------T 232 (587)
T ss_pred ccce----------eeccc-------cchhhhhcc--CCh-----hhee----------eeeecchhhc--cc------h
Confidence 2222 33343 478888654 222 1100 011111 111 00 1
Q ss_pred hcCCCCCCEEEeecccCCCCCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeecccccccCCCCC---Ccccee
Q 011636 253 KNGYGNLPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPG---NFERHW 329 (480)
Q Consensus 253 ~~g~~~~~vvVsETGWPs~G~~~as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~~K~~~pG---~~E~~w 329 (480)
.+ +-+||+.-|.|-|++-...-|+ ++.-+..| +....|. +--..-|+=|-+--. .+|+ +-|-.|
T Consensus 233 ~~--g~~pV~leefGfsta~g~e~s~--ayfiw~~l---al~~ggd-----GaLiwclsdf~~gsd-d~ey~w~p~el~f 299 (587)
T COG3934 233 IM--GWQPVNLEEFGFSTAFGQENSP--AYFIWIRL---ALDTGGD-----GALIWCLSDFHLGSD-DSEYTWGPMELEF 299 (587)
T ss_pred hc--ccceeeccccCCcccccccccc--hhhhhhhh---HHhhcCC-----ceEEEEecCCccCCC-CCCCcccccccee
Confidence 12 2489999999999863332121 11111122 2111110 222334444442211 1233 378899
Q ss_pred EeeecCCCceeec
Q 011636 330 GIFTYDGRPKYQL 342 (480)
Q Consensus 330 GLf~~d~~~ky~l 342 (480)
||.+.||.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999875
No 32
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=48.00 E-value=27 Score=33.37 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=30.2
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEE
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVM 75 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~ 75 (480)
+++|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998877889999999987
No 33
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=47.78 E-value=27 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.4
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEE
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVM 75 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~ 75 (480)
+++|+.+|++++|+.+.++.=+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998877889999999997
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=47.15 E-value=4.3e+02 Score=29.14 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHHHHhhhcccCCcceEEEEEecccccccC-----CCc-ch-hhhHHHHHHH-HHHHHHHcCCCCceEE-eeeec
Q 011636 95 KWVSQNVSQHIRKNNVNIRYVAVGNEPFLET-----YNG-SF-LRTTFPALRN-VQAALIKAGLSNQVKV-TVPLN 161 (480)
Q Consensus 95 ~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~-----~~~-~~-~~~ll~am~~-vk~aL~~~gl~~~IkV-st~~~ 161 (480)
..+.+-|+.|- +.+..|-+|.+.||+.... +.. .+ +......|++ +.-+|++.+++.++|| ...|+
T Consensus 208 ~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n 282 (496)
T PF02055_consen 208 DYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHN 282 (496)
T ss_dssp HHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEE
T ss_pred HHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 35666677764 4568999999999998521 111 12 4555666765 8889999998555776 33444
No 35
>PLN02849 beta-glucosidase
Probab=46.73 E-value=37 Score=37.37 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCc-------hHHHHhhhCCCEEEEecCCCchhH
Q 011636 40 ETVVNLLRDNGFQKAKL-------FD-----ADY-------GTLRALGKSGIEVMVGIPNDMLAS 85 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~lgv~n~~~~~ 85 (480)
+|.+++|+++|++.-|. +- .|+ +++.++.+.||+-+|.+.--+++-
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 67899999999888774 31 132 589999999999999998655544
No 36
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=46.54 E-value=51 Score=30.81 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred hHHHHhhhC--CCEEEEecCCCchhH---HHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHH
Q 011636 62 GTLRALGKS--GIEVMVGIPNDMLAS---LASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFP 136 (480)
Q Consensus 62 ~vL~A~~~t--gi~V~lgv~n~~~~~---la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~ 136 (480)
..++.++.. |++|++.|....... +..+.+...+. .+++..++.+ -.+.||-+==|-.... .......+..
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f-~~~~~~~v~~--~~~DGidiD~E~~~~~-~~~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAF-ANSLVSFLKT--YGFDGVDIDWEYPGAA-DNSDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHH-HHHHHHHHHH--cCCCceEEeeeCCCCc-CccHHHHHHH
Confidence 345666665 999999988643221 33443333333 3334444433 2344555433443211 1012466888
Q ss_pred HHHHHHHHHHHcCC
Q 011636 137 ALRNVQAALIKAGL 150 (480)
Q Consensus 137 am~~vk~aL~~~gl 150 (480)
.|+.+|+.|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987655
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=46.39 E-value=51 Score=36.03 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.3
Q ss_pred hHHHHHHHHhCCCCEEEE-------ec------CCc-------hHHHHhhhCCCEEEEecCCCchhH
Q 011636 39 PETVVNLLRDNGFQKAKL-------FD------ADY-------GTLRALGKSGIEVMVGIPNDMLAS 85 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~lgv~n~~~~~ 85 (480)
-+|.++++|++|++.-|. +- .|+ .++..|.+.||+-+|.+.--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 478899999999888775 31 132 589999999999999998665543
No 38
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=44.98 E-value=60 Score=31.81 Aligned_cols=40 Identities=18% Similarity=0.493 Sum_probs=24.9
Q ss_pred HhcCCCCCCEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHhhC
Q 011636 252 QKNGYGNLPIIIGEIGWPTDGDRN------ANNEYARRFNQGFMSHISG 294 (480)
Q Consensus 252 ~~~g~~~~~vvVsETGWPs~G~~~------as~~na~~y~~~lv~~~~s 294 (480)
..+++++++|++ .|||.|... .+....+..+..+++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 456677766655 599998752 3444555556666666544
No 39
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.78 E-value=96 Score=31.41 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=50.9
Q ss_pred chHHHHhhhCCCEEEEecCCCc--------hhHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhh
Q 011636 61 YGTLRALGKSGIEVMVGIPNDM--------LASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLR 132 (480)
Q Consensus 61 ~~vL~A~~~tgi~V~lgv~n~~--------~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~ 132 (480)
+.+++++++.|++|++.|.+.. ...+.+++.. ++-+.+++..++.+ -.+.||-+-=|.+. .+...
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~-r~~fi~~iv~~l~~--~~~DGidiDwE~~~----~~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEA-RQRLINNILALAKK--YGYDGVNIDFENVP----PEDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHH-HHHHHHHHHHHHHH--hCCCcEEEecccCC----HHHHH
Confidence 3688888889999999887642 2334444332 22233345444433 23446665556552 12245
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 011636 133 TTFPALRNVQAALIKAGL 150 (480)
Q Consensus 133 ~ll~am~~vk~aL~~~gl 150 (480)
....-|+.+|.+|++.|+
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 578889999999987775
No 40
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=40.11 E-value=65 Score=27.92 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCEEEEec--CCc---hHHHHhhhCCCEEEE
Q 011636 40 ETVVNLLRDNGFQKAKLFD--ADY---GTLRALGKSGIEVMV 76 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~--~d~---~vL~A~~~tgi~V~l 76 (480)
+++.+.++++|++.|+++= ..+ .+|++|+..||++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4456677889999998884 443 799999999998653
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=39.41 E-value=68 Score=35.08 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred hHHHHHHHHhCCCCEEEE-------ec------CCc-------hHHHHhhhCCCEEEEecCCCchhH
Q 011636 39 PETVVNLLRDNGFQKAKL-------FD------ADY-------GTLRALGKSGIEVMVGIPNDMLAS 85 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~lgv~n~~~~~ 85 (480)
-+|.+++||++|++.-|. += .|+ .++..|.+.||+-+|.+.--+++.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 378899999999887764 31 132 589999999999999998766543
No 42
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=39.16 E-value=36 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEE
Q 011636 42 VVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMV 76 (480)
Q Consensus 42 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~l 76 (480)
-+++|+.+|+++||+. .||.=..++.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3789999999999999 789888889999999873
No 43
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.09 E-value=40 Score=35.61 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEec
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGI 78 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv 78 (480)
+++|+.+|+++||+.. ||.=..++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 9988888999999997433
No 44
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=36.59 E-value=50 Score=31.50 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=31.2
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEec
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGI 78 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv 78 (480)
+++|+.+|++++|+.+.++.=+.++.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999988877889999999998434
No 45
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=36.11 E-value=2.4e+02 Score=30.09 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCCEEEEecC----------Cc------------hHHHHhhhCCCEEEEecCCCc-------h----hHH
Q 011636 40 ETVVNLLRDNGFQKAKLFDA----------DY------------GTLRALGKSGIEVMVGIPNDM-------L----ASL 86 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~~----------d~------------~vL~A~~~tgi~V~lgv~n~~-------~----~~l 86 (480)
++....+|+.||+.|||.-. +| .+++.+.+.||+|++.+-... . ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56677889999999999643 34 356777889999999965321 1 011
Q ss_pred HhhHHHHHHHH--HHHhhhcccCCcceEEEEEecccccccCCCcchhhhH-HHHHHHHHHHHHHcC
Q 011636 87 ASSMKTAEKWV--SQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTT-FPALRNVQAALIKAG 149 (480)
Q Consensus 87 a~~~~~a~~Wv--~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~l-l~am~~vk~aL~~~g 149 (480)
......-..++ .+.|...+.+ ...|.+|-+=||+..-.. .+.+..- -+|..-|++.+.+.-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~-~~~VIg~~~~NEP~~~~~-~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKN-YDTVIGFELINEPNGIVT-SETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccC-CCceeeeeeecCCcccCC-ccccccchHHHHHHHHhhhhhcC
Confidence 11000001121 1223333332 378888999999983111 1222233 477777876665544
No 46
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=35.53 E-value=68 Score=35.09 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCCCCEEEE-------ec------CCc-------hHHHHhhhCCCEEEEecCCCchh
Q 011636 39 PETVVNLLRDNGFQKAKL-------FD------ADY-------GTLRALGKSGIEVMVGIPNDMLA 84 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~lgv~n~~~~ 84 (480)
-+|.++++|++|++.-|. +- .|+ .++.++.+.||+.+|.+.=-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 478999999999877764 31 132 58999999999999999654443
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.87 E-value=91 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=34.5
Q ss_pred hHHHHHHHHhCCCCEEEEecCC---------------c--------hHHHHhhhCCCEEEEecCCC
Q 011636 39 PETVVNLLRDNGFQKAKLFDAD---------------Y--------GTLRALGKSGIEVMVGIPND 81 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRiY~~d---------------~--------~vL~A~~~tgi~V~lgv~n~ 81 (480)
|++.++.||+.+++.|-+|.-. | ++++|+.+.||+|++=+.-.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 6788999999999999887631 1 57899999999998877654
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=76 Score=28.26 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 40 ETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
..++++|+.+|++.|=+-..-+.-+++|++.||+|..+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999999999999999999999999988
No 49
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=33.99 E-value=1.3e+02 Score=32.91 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCEEEeecccCCCCCCCCC--------HHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeecccc-cccCCCCCCccce
Q 011636 258 NLPIIIGEIGWPTDGDRNAN--------NEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDE-DAKSVDPGNFERH 328 (480)
Q Consensus 258 ~~~vvVsETGWPs~G~~~as--------~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE-~~K~~~pG~~E~~ 328 (480)
++||+|+|-|.......... +..-+.+++.+.+.+.. |.+++ -+|.-++.|- .|. .|...+.
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~d--Gv~V~----GY~~WSl~Dn~Ew~---~G~y~~R 435 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIAD--GIPLM----GYTTWGCIDLVSAS---TGEMSKR 435 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHC--CCCEE----EEEeeccccccccc---CCCccce
Q ss_pred eEeeecCCC
Q 011636 329 WGIFTYDGR 337 (480)
Q Consensus 329 wGLf~~d~~ 337 (480)
|||++.|.+
T Consensus 436 fGLv~VD~~ 444 (474)
T PRK09852 436 YGFVYVDRD 444 (474)
T ss_pred eeeEEECCC
No 50
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.53 E-value=53 Score=34.37 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCEEEEecCC-chHHHHhhhCCCEEE
Q 011636 42 VVNLLRDNGFQKAKLFDAD-YGTLRALGKSGIEVM 75 (480)
Q Consensus 42 vv~llk~~~i~~VRiY~~d-~~vL~A~~~tgi~V~ 75 (480)
..++|+.+|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 887888999999986
No 51
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=32.46 E-value=61 Score=28.21 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred ChHHHHHHHHhCC---CCEEEEecCCch
Q 011636 38 PPETVVNLLRDNG---FQKAKLFDADYG 62 (480)
Q Consensus 38 s~~~vv~llk~~~---i~~VRiY~~d~~ 62 (480)
.|+++.++|+.+. =+++||||.|..
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 4788888988764 389999999974
No 52
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.45 E-value=4.5e+02 Score=25.04 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCc---------hHHHHhhhCCCEE
Q 011636 40 ETVVNLLRDNGFQKAKLFDADY---------GTLRALGKSGIEV 74 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~~d~---------~vL~A~~~tgi~V 74 (480)
.++++.|.+.|.++|=+..... ...++++..|+++
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~ 141 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYEC 141 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 4556677777777776654321 2345666778765
No 53
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.38 E-value=58 Score=34.71 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=32.9
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
+++|+.+|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999985544
No 54
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.19 E-value=4e+02 Score=28.19 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCceeeccccccc
Q 011636 183 DLMLAIVKFLSDNGGPFTVNIYPFISL 209 (480)
Q Consensus 183 ~~l~~~ldfL~~~~spf~vNiYPyf~~ 209 (480)
+.+...++|+.+.+ +-.+++|||--+
T Consensus 305 ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 305 EDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 34667788887654 456788887543
No 55
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=31.26 E-value=3.5e+02 Score=23.46 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=62.5
Q ss_pred HHHHHhCCCCEEEEecCCc----------hHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHhhhcccCCcceE
Q 011636 43 VNLLRDNGFQKAKLFDADY----------GTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNI 112 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~----------~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I 112 (480)
++.|.+.|.++|-+-.... ...+++++.|++...-........-.. ......|+++. .|
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~----~p------ 69 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDA-REAQLLWLRRL----RP------ 69 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHH-HHHHHHHHHTC----SS------
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhH-HHHHHHHHhcC----CC------
Confidence 4567778888888887432 356788889997544333221111111 11222365433 23
Q ss_pred EEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCC--CceEEeeeeccccccccCCCCCCcccccchHHHHHHHHH
Q 011636 113 RYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLS--NQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVK 190 (480)
Q Consensus 113 ~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~--~~IkVst~~~~~vl~~s~p~Ps~g~f~~~~~~~l~~~ld 190 (480)
.+|+++|+.+. . .+..+|.+.|+. ++|.|-+-.....+...+ |....++.+....-..+++
T Consensus 70 daii~~~~~~a--------~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~--p~it~i~~~~~~~g~~a~~ 132 (160)
T PF13377_consen 70 DAIICSNDRLA--------L-------GVLRALRELGIRVPQDISVVSFDDSPLLEFFS--PPITTIDQDPREMGREAVE 132 (160)
T ss_dssp SEEEESSHHHH--------H-------HHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS--STSEEEEE-HHHHHHHHHH
T ss_pred cEEEEcCHHHH--------H-------HHHHHHHHcCCcccccccEEEecCcHHHHHHc--CCCceecCCHHHHHHHHHH
Confidence 28888888651 1 233556667763 467776655444443333 4444555554433333333
Q ss_pred HH
Q 011636 191 FL 192 (480)
Q Consensus 191 fL 192 (480)
.|
T Consensus 133 ~l 134 (160)
T PF13377_consen 133 LL 134 (160)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 56
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.07 E-value=61 Score=35.26 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
+++|+.+|+++||+..-+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999888899999999974443
No 57
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.02 E-value=62 Score=34.33 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=32.3
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
+++|+.+|+++||+.+.+|.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999974444
No 58
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=30.74 E-value=1.8e+02 Score=29.46 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred HHHhhh--CCCEEEEecCC----CchhHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHHH
Q 011636 64 LRALGK--SGIEVMVGIPN----DMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPA 137 (480)
Q Consensus 64 L~A~~~--tgi~V~lgv~n----~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~a 137 (480)
+.++++ .+++|++.|.. +....+..+.+.-.+. .++|..++.. -.+.||-+==|-... .++....+...
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~f-i~~i~~~~~~--~~~DGidiDwE~~~~--~~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKF-IDSIVSFLKK--YGFDGIDIDWEYPGA--RGDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHH-HHHHHHHHHH--cCCCeEEECCcCCCC--CccHHHHHHHH
Confidence 455555 48999998875 2234454444333333 3344444433 345566664444321 11223457788
Q ss_pred HHHHHHHHHHc
Q 011636 138 LRNVQAALIKA 148 (480)
Q Consensus 138 m~~vk~aL~~~ 148 (480)
|+++|+.|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 59
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=30.61 E-value=1.6e+02 Score=34.50 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=58.8
Q ss_pred eeEEeCCCCCC------CCChHHHHHHHHhCCCCEEEEecC--CchHHHHhhhCCCEEEEecCCCc--hhHHHhhHHHHH
Q 011636 25 LGANWGTQASH------PLPPETVVNLLRDNGFQKAKLFDA--DYGTLRALGKSGIEVMVGIPNDM--LASLASSMKTAE 94 (480)
Q Consensus 25 ~GvnYg~~~~n------~ps~~~vv~llk~~~i~~VRiY~~--d~~vL~A~~~tgi~V~lgv~n~~--~~~la~~~~~a~ 94 (480)
-|+|.-..-.- -....+.++++|+.++|.||+... ++.-++.+...||-|+--..... .+.-..-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 47777654221 111345677888999999999842 24788889999999987765431 110001123444
Q ss_pred HHHHHHhhhcccCCcceEEEEEeccccc
Q 011636 95 KWVSQNVSQHIRKNNVNIRYVAVGNEPF 122 (480)
Q Consensus 95 ~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 122 (480)
..+++.|.+- ++.-.|.--++|||.-
T Consensus 383 ~~i~~mver~--knHPSIiiWs~gNE~~ 408 (808)
T COG3250 383 EEVRRMVERD--RNHPSIIIWSLGNESG 408 (808)
T ss_pred HHHHHHHHhc--cCCCcEEEEecccccc
Confidence 4455666443 1224688899999975
No 60
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.18 E-value=65 Score=35.90 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=33.4
Q ss_pred HHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 42 VVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 42 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
.+++|+.+||++||+..-+|.=+.++++.||+|.=-++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999889999999999884444
No 61
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.00 E-value=66 Score=34.48 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecC
Q 011636 42 VVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIP 79 (480)
Q Consensus 42 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~ 79 (480)
.+++|+.+|+++||+..-+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 37899999999999999999888899999999973343
No 62
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=29.83 E-value=1.8e+02 Score=29.06 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=75.8
Q ss_pred CcchhHHHHHHHHHHHHHhhcCCceeEEeCCCCCCCC--ChHHHHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEec
Q 011636 1 MASFSVYASIKFLSLCAMICGVSGLGANWGTQASHPL--PPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGI 78 (480)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~p--s~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv 78 (480)
|++.+.++.+++|.+++..|-. ..-..++ ...|++.+|.++||+.-|. ..+.| ...+-|
T Consensus 1 ~k~~~~~l~~l~l~l~L~gCk~--------~Ly~gL~e~eANemlAlL~~~gI~A~K~----------~~~~g-~~~l~V 61 (246)
T COG4669 1 MKSLRKYLFLLLLILLLTGCKV--------DLYTGLSEKEANEMLALLMSHGINAEKK----------ADKDG-GTSLLV 61 (246)
T ss_pred CchHHHHHHHHHHHHHHhcchH--------HHHcCCCHhHHHHHHHHHHHcCCcceee----------ccCCC-ceEEEE
Confidence 5666666655555555555431 1112233 3468999999999998887 22222 222444
Q ss_pred CCCchhHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHc-CC-CCceEE
Q 011636 79 PNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKA-GL-SNQVKV 156 (480)
Q Consensus 79 ~n~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~-gl-~~~IkV 156 (480)
..+ . ...|.+|++.+=.|.-+ .+++.-++-++--+... ..+-+...-..=+++-+.|++- |. .-+|.|
T Consensus 62 e~~---~----fa~Av~iL~~~GlPr~~--f~~l~d~Fp~dgLVsSP-~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I 131 (246)
T COG4669 62 EES---D----FAEAVEILNQNGLPRKK--FTTLGDIFPKDGLVSSP-TEEKARLNYAKEQQLEQTLSKMDGVISARVHI 131 (246)
T ss_pred cHH---H----HHHHHHHHHhcCCCCCC--CCcHHHhCCcccccCCc-HHHHHHHHHHHHHHHHHHHHhcCceEEEEEEE
Confidence 432 2 34578899886555433 25666666666666432 2233333334445666666653 22 223455
Q ss_pred eeeeccccccccCCCCCCc
Q 011636 157 TVPLNADVYESASGVPSGG 175 (480)
Q Consensus 157 st~~~~~vl~~s~p~Ps~g 175 (480)
+.|++ +..+. -++|++.
T Consensus 132 ~lp~~-~~~g~-~~~P~sa 148 (246)
T COG4669 132 SLPED-DDEGK-NALPSSA 148 (246)
T ss_pred EcCCC-CccCC-CCCCcee
Confidence 55544 33332 2235554
No 63
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=28.93 E-value=1.2e+02 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCEEEEec----------CCc---hHHHHhhhCCCEEEE
Q 011636 40 ETVVNLLRDNGFQKAKLFD----------ADY---GTLRALGKSGIEVMV 76 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~----------~d~---~vL~A~~~tgi~V~l 76 (480)
+++.+..+++|++.|+++= ..+ ..|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 5566777889999988874 333 799999999998653
No 64
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.78 E-value=94 Score=33.57 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCEEEEe--cCCc----------------hHHHHhhhCCC-----EEEEecCCCchhHHHhhHHH
Q 011636 40 ETVVNLLRDNGFQKAKLF--DADY----------------GTLRALGKSGI-----EVMVGIPNDMLASLASSMKT 92 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY--~~d~----------------~vL~A~~~tgi-----~V~lgv~n~~~~~la~~~~~ 92 (480)
++.++.|++.|+++|-+= +.++ ..++.+++.|+ .+|.|+|.+..+++..+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~ 227 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHH
Confidence 577888888888876542 2222 24445555665 47889998877666554443
No 65
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=28.56 E-value=1.3e+02 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCEEEEec----------CCc---hHHHHhhhCCCEEEE
Q 011636 40 ETVVNLLRDNGFQKAKLFD----------ADY---GTLRALGKSGIEVMV 76 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~----------~d~---~vL~A~~~tgi~V~l 76 (480)
+++.+.++++|++.|+++= ..+ .+|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 4566777889999988873 333 699999999998653
No 66
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=28.42 E-value=4.1e+02 Score=28.31 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHcCC
Q 011636 131 LRTTFPALRNVQAALIKAGL 150 (480)
Q Consensus 131 ~~~ll~am~~vk~aL~~~gl 150 (480)
.......|+.+|++|++.++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 35577789999999988765
No 67
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.13 E-value=3.2e+02 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=41.6
Q ss_pred CCceeEEeCCCCCCCCChHHHHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecCCC
Q 011636 22 VSGLGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPND 81 (480)
Q Consensus 22 ~~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~n~ 81 (480)
...+|||.-...++ |..++.++.+.+.+...|=+..-+|...+.+++.||+|+.-|+..
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s~ 113 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPSP 113 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCCH
Confidence 45788888543322 334567777777787777666556766788999999999888753
No 68
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=28.09 E-value=5.4e+02 Score=24.69 Aligned_cols=94 Identities=14% Similarity=0.311 Sum_probs=56.2
Q ss_pred hHHHHHHHHhCCCCEEEEe-c-CC-c-hHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHhhhcccCCcceEEE
Q 011636 39 PETVVNLLRDNGFQKAKLF-D-AD-Y-GTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRY 114 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRiY-~-~d-~-~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~ 114 (480)
|++.++.++..|.+.|=+= . ++ + .+++.+++.|+++-|.+.... .+. .+.+|++. =+.|.-
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~------------~~~~~l~~-vD~Vlv 133 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PVE------------ELEPYLDQ-VDMVLV 133 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GG------------GGTTTGCC-SSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cch------------HHHHHhhh-cCEEEE
Confidence 5677777777776655332 1 11 1 688889999999988886432 221 24455543 134444
Q ss_pred EEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCC
Q 011636 115 VAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLS 151 (480)
Q Consensus 115 I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~ 151 (480)
.+| |+=. ..+.+.+..+..|+.+|+.+.+.|++
T Consensus 134 MsV--~PG~--~Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 134 MSV--EPGF--GGQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp ESS---TTT--SSB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred EEe--cCCC--CcccccHHHHHHHHHHHHHHHhcCCc
Confidence 443 3311 12335788999999999999999975
No 69
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.97 E-value=87 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCEEEEe--cCCc---hHHHHhhhCCCEEEE
Q 011636 41 TVVNLLRDNGFQKAKLF--DADY---GTLRALGKSGIEVMV 76 (480)
Q Consensus 41 ~vv~llk~~~i~~VRiY--~~d~---~vL~A~~~tgi~V~l 76 (480)
.+.+.++++|++.|+++ +..+ .++++|+.+|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777899988887 3443 789999999998653
No 70
>PRK05309 30S ribosomal protein S11; Validated
Probab=27.08 E-value=1.4e+02 Score=26.72 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCEEEEec--CCc---hHHHHhhhCCCEEE
Q 011636 40 ETVVNLLRDNGFQKAKLFD--ADY---GTLRALGKSGIEVM 75 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~--~d~---~vL~A~~~tgi~V~ 75 (480)
+.+.+.++++|++.|+++= ..+ .+|++|+..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4456677889999999984 333 79999999999865
No 71
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.44 E-value=7.9e+02 Score=26.00 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=79.4
Q ss_pred CChHHHHHHHHhCCCCEEEEecCC--c-------------hHHHHhhhCCCEEEEecCCC---c---hhHHHh-hH---H
Q 011636 37 LPPETVVNLLRDNGFQKAKLFDAD--Y-------------GTLRALGKSGIEVMVGIPND---M---LASLAS-SM---K 91 (480)
Q Consensus 37 ps~~~vv~llk~~~i~~VRiY~~d--~-------------~vL~A~~~tgi~V~lgv~n~---~---~~~la~-~~---~ 91 (480)
.++.+.++.+++.|+..|-+++.+ | .+-++++++||+|..-..|- . ...+++ ++ +
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~ 111 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRR 111 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHH
Confidence 456788899999999999988533 1 35577889999966433320 0 001111 11 2
Q ss_pred HHHHHHHHHhh--hcccCCcceEEEEEecccccc---cCCCcchhhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccc
Q 011636 92 TAEKWVSQNVS--QHIRKNNVNIRYVAVGNEPFL---ETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYE 166 (480)
Q Consensus 92 ~a~~Wv~~~v~--~y~p~~~~~I~~I~VGNEvl~---~~~~~~~~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~ 166 (480)
.+-+.+++.|. .-+. .....+..|-+--. ..........++.+|+.+-.+.++.|++ |++.--
T Consensus 112 ~ai~~~kraId~A~eLG---a~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~G--V~laLE------- 179 (382)
T TIGR02631 112 YALRKVLRNMDLGAELG---AETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYG--LRFALE------- 179 (382)
T ss_pred HHHHHHHHHHHHHHHhC---CCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCC--cEEEEc-------
Confidence 33333444442 2222 33335555643210 0000123455666666666666666653 544431
Q ss_pred ccCCCCCCccccc-chHHHHHHHHHHHHhcCCC--ceeeccccccc
Q 011636 167 SASGVPSGGDFRA-DIHDLMLAIVKFLSDNGGP--FTVNIYPFISL 209 (480)
Q Consensus 167 ~s~p~Ps~g~f~~-~~~~~l~~~ldfL~~~~sp--f~vNiYPyf~~ 209 (480)
. +|. .++. .+.+.+...++++...++| +++|+=.+...
T Consensus 180 p---~p~--~~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~ 220 (382)
T TIGR02631 180 P---KPN--EPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQ 220 (382)
T ss_pred c---CCC--CCCcceecCCHHHHHHHHHHcCCccceeEEEechhHh
Confidence 1 111 1111 1123345677777777655 46776655543
No 72
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=26.25 E-value=2.3e+02 Score=24.22 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=28.2
Q ss_pred CCceeEEeCCCCCCCCChHHHHHHHHhCCCCEEEEe
Q 011636 22 VSGLGANWGTQASHPLPPETVVNLLRDNGFQKAKLF 57 (480)
Q Consensus 22 ~~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRiY 57 (480)
...+-|.-.+.+...+..+++.+.|++.||..-++-
T Consensus 31 ~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 31 DPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred CCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 556778777777788888899999999998765553
No 73
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=26.20 E-value=7.3e+02 Score=25.50 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=64.9
Q ss_pred HHHHHHHHhCCCCEEEEecC------Cc------------hHHHHhhhCCCEEEEecCCC--------chhH--------
Q 011636 40 ETVVNLLRDNGFQKAKLFDA------DY------------GTLRALGKSGIEVMVGIPND--------MLAS-------- 85 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~~------d~------------~vL~A~~~tgi~V~lgv~n~--------~~~~-------- 85 (480)
.++++.+|+.|++.|-+|-. .+ ..|+.+++.|++|+|=...- .++.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 46778889999999999952 11 46888999999998743210 0111
Q ss_pred -H----HhhHHHHHHHHHH---HhhhcccCCcceEEEEEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCCC
Q 011636 86 -L----ASSMKTAEKWVSQ---NVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSN 152 (480)
Q Consensus 86 -l----a~~~~~a~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~~ 152 (480)
+ ..-.++...|.+. .|.++.-.++..|..+=|=||.-. ...-..+|+.++++.++.+...
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~-------~~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS-------YGTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC-------TSS-HHHHHHHHHHHHHTT-SS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC-------CcccHhHHHHHHHHHHHhhCcc
Confidence 0 0112345566554 355554434467999999999752 1223567889999999998853
No 74
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=25.90 E-value=1e+02 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhcccCCcceEEEEEecccccccCCC-cchhhhHHHHHHHHHHHHHHc
Q 011636 93 AEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYN-GSFLRTTFPALRNVQAALIKA 148 (480)
Q Consensus 93 a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~-~~~~~~ll~am~~vk~aL~~~ 148 (480)
-..|+++||.- |+|.++.+.. ..-++.|+|+++..++.++..
T Consensus 13 Li~WLedNi~~--------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 13 LIAWLEDNIDC--------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHcccCC--------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45688887743 3444443211 112577999999888887654
No 75
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=25.81 E-value=1.5e+02 Score=28.28 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCCCceEEeeeeccccccccCCCCCCcccccchHHHHHHHHHHHHhcCCCceeec
Q 011636 136 PALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNI 203 (480)
Q Consensus 136 ~am~~vk~aL~~~gl~~~IkVst~~~~~vl~~s~p~Ps~g~f~~~~~~~l~~~ldfL~~~~spf~vNi 203 (480)
.+++.+.+.+.+.|+.+ |++....... + |.. .....++.+.+.+.+-|+.+++
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~~-----~--~~~-------~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGGF-----D--PDD-------PRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETTC-----C--TTS-------GHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceee-eEecCCCCcc-----c--ccc-------HHHHHHHHHHHHhhccceeeec
Confidence 57888888898899854 7765532211 1 111 1112478888888888887774
No 76
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.01 E-value=63 Score=22.82 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhh
Q 011636 466 LRLVVGLFLFVLII 479 (480)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (480)
+.++++|||-||||
T Consensus 14 l~~llflv~imlii 27 (43)
T PF11395_consen 14 LSFLLFLVIIMLII 27 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 45667888888887
No 77
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=24.12 E-value=1.4e+02 Score=30.57 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=36.2
Q ss_pred ceEEEEEecccccc--cC--CCcch--hhhHHHHHHHHHHHHHHcCCCCceEEeeeeccccccccC
Q 011636 110 VNIRYVAVGNEPFL--ET--YNGSF--LRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESAS 169 (480)
Q Consensus 110 ~~I~~I~VGNEvl~--~~--~~~~~--~~~ll~am~~vk~aL~~~gl~~~IkVst~~~~~vl~~s~ 169 (480)
..|..+.+|.|-.- +. ..+.+ +..|...+.+||..| | ...|||++-.++-+...-
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~~~ 78 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFGYQ 78 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcCcC
Confidence 56889999999642 11 11122 456777777777765 3 358899999988775543
No 78
>PRK07198 hypothetical protein; Validated
Probab=23.49 E-value=66 Score=34.38 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.3
Q ss_pred HHHHHhCCCCEE-EEecCCchHHHHhhhCCCEEEEecCC
Q 011636 43 VNLLRDNGFQKA-KLFDADYGTLRALGKSGIEVMVGIPN 80 (480)
Q Consensus 43 v~llk~~~i~~V-RiY~~d~~vL~A~~~tgi~V~lgv~n 80 (480)
.++|+.+||++| |+.+.++.=+.++.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678999999999 99999998888999999999855553
No 79
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=23.41 E-value=6.1e+02 Score=27.12 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=50.6
Q ss_pred hHHHHhhhCCCEEEEecCCCchhH----------------HHhh-HHHHHHHHHHHhhhcccCCcceEEEEEeccccccc
Q 011636 62 GTLRALGKSGIEVMVGIPNDMLAS----------------LASS-MKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLE 124 (480)
Q Consensus 62 ~vL~A~~~tgi~V~lgv~n~~~~~----------------la~~-~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~ 124 (480)
..|+++++.|+..+++..|.-.-- |..+ ..+-...+.+ |.+++...+.+|.+|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 588998999999888887742100 1111 1111223333 333345456899999999999876
Q ss_pred CC--Ccc---h-hhhHHHHHHHHHHHHHHcCCCCceEEeeeec
Q 011636 125 TY--NGS---F-LRTTFPALRNVQAALIKAGLSNQVKVTVPLN 161 (480)
Q Consensus 125 ~~--~~~---~-~~~ll~am~~vk~aL~~~gl~~~IkVst~~~ 161 (480)
+. ..+ + .......|+.+++.|++.|+..+ |..+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 41 111 2 46678889999999999999654 444444
No 80
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=21.69 E-value=2e+02 Score=31.91 Aligned_cols=74 Identities=27% Similarity=0.453 Sum_probs=47.7
Q ss_pred hcCCCCCCEEEeecccCCCCCCC----------CCHHHHHHHHHHHHHHhhCCCCCCCCCCCccEEEeeccccc-ccCCC
Q 011636 253 KNGYGNLPIIIGEIGWPTDGDRN----------ANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDED-AKSVD 321 (480)
Q Consensus 253 ~~g~~~~~vvVsETGWPs~G~~~----------as~~na~~y~~~lv~~~~s~~Gtp~rp~~i~~yiF~~fdE~-~K~~~ 321 (480)
|-.|++.+|.|+|-|-+...+.. .=++..+.|++.+.+.+.. .|.- --.+|+.++-|-- |.
T Consensus 402 K~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn----v~GYf~WSLmDnfEw~--- 473 (524)
T KOG0626|consen 402 KDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN----VKGYFVWSLLDNFEWL--- 473 (524)
T ss_pred HhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc----eeeEEEeEcccchhhh---
Confidence 33478999999999998754331 3344566677766665532 2321 2357888888732 55
Q ss_pred CCCccceeEeeecC
Q 011636 322 PGNFERHWGIFTYD 335 (480)
Q Consensus 322 pG~~E~~wGLf~~d 335 (480)
.| ..-.|||++.|
T Consensus 474 ~G-y~~RFGlyyVD 486 (524)
T KOG0626|consen 474 DG-YKVRFGLYYVD 486 (524)
T ss_pred cC-cccccccEEEe
Confidence 23 56789999964
No 81
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.28 E-value=7.6e+02 Score=24.35 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=54.5
Q ss_pred hHHHHHHHHhCCCCEEEEe-cCC--c-hHHHHhhhCCCEEEEecCCCchhHHHhhHHHHHHHHHHHhhhcccCCcceEEE
Q 011636 39 PETVVNLLRDNGFQKAKLF-DAD--Y-GTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRY 114 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRiY-~~d--~-~vL~A~~~tgi~V~lgv~n~~~~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~ 114 (480)
|++.++.+.+.|.+.|=+- .+. + .+|+.+++.|+.|-.|+...--..+. . +.+|++. -+.|.-
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~----~--------i~~~l~~-vD~VLi 146 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPIS----L--------LEPYLDQ-IDLIQI 146 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHH----H--------HHHHHhh-cCEEEE
Confidence 6777777777777665542 221 2 57788888998444444432111221 1 2223221 045544
Q ss_pred EEecccccccCCCcchhhhHHHHHHHHHHHHHHcCCC
Q 011636 115 VAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLS 151 (480)
Q Consensus 115 I~VGNEvl~~~~~~~~~~~ll~am~~vk~aL~~~gl~ 151 (480)
.+| |+=.. .+.+.+..+..|+.+|+.+++.|++
T Consensus 147 MtV--~PGfg--GQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 147 LTL--DPRTG--TKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EEE--CCCCC--CccccHHHHHHHHHHHHHHHhcCCC
Confidence 555 32111 2334677899999999999988874
No 82
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=21.12 E-value=82 Score=33.39 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCCCCEEEeecccCCCCCCCC
Q 011636 256 YGNLPIIIGEIGWPTDGDRNA 276 (480)
Q Consensus 256 ~~~~~vvVsETGWPs~G~~~a 276 (480)
..++.|+|-| |.+|+.-+
T Consensus 194 ~~~~gI~IMe---P~~gG~l~ 211 (391)
T COG1453 194 SKGLGIFIME---PLDGGGLL 211 (391)
T ss_pred hCCCcEEEEe---eCCCCCcc
Confidence 3589999999 99988753
No 83
>PLN00196 alpha-amylase; Provisional
Probab=21.01 E-value=1.7e+02 Score=31.53 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=37.7
Q ss_pred eeEEeCCCCCC---CCChHHHHHHHHhCCCCEE-----------------EEecCC-c---------hHHHHhhhCCCEE
Q 011636 25 LGANWGTQASH---PLPPETVVNLLRDNGFQKA-----------------KLFDAD-Y---------GTLRALGKSGIEV 74 (480)
Q Consensus 25 ~GvnYg~~~~n---~ps~~~vv~llk~~~i~~V-----------------RiY~~d-~---------~vL~A~~~tgi~V 74 (480)
-|.+|-....+ +--..+-++.|+++||+.| +.|+.| + +.++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 47777542111 1112344668899998887 556666 2 4778888999999
Q ss_pred EEecCCC
Q 011636 75 MVGIPND 81 (480)
Q Consensus 75 ~lgv~n~ 81 (480)
++++-..
T Consensus 109 ilDvV~N 115 (428)
T PLN00196 109 IADIVIN 115 (428)
T ss_pred EEEECcc
Confidence 9997543
No 84
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=20.89 E-value=1.5e+02 Score=31.02 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHhCCCCEEEEecCCc------hHHHHhhhCCCEEEEecCCC
Q 011636 36 PLPPETVVNLLRDNGFQKAKLFDADY------GTLRALGKSGIEVMVGIPND 81 (480)
Q Consensus 36 ~ps~~~vv~llk~~~i~~VRiY~~d~------~vL~A~~~tgi~V~lgv~n~ 81 (480)
.|+++++.++++... ..||+|...| .+++.+.+.||.|.+|=.+.
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a 195 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSDA 195 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCcC
Confidence 366777777777544 7899997765 57888899999998887653
No 85
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.78 E-value=6.6e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=37.7
Q ss_pred ceeEEeCCCCCCCCChHHHHHHHHh----CCCCEEEEecCCc-----hHHHHhhhCC---CEEEEecCCC
Q 011636 24 GLGANWGTQASHPLPPETVVNLLRD----NGFQKAKLFDADY-----GTLRALGKSG---IEVMVGIPND 81 (480)
Q Consensus 24 ~~GvnYg~~~~n~ps~~~vv~llk~----~~i~~VRiY~~d~-----~vL~A~~~tg---i~V~lgv~n~ 81 (480)
++|.|.+.+|.++.......++|+. .++.+||+-..+| ++|+++++.| ..|.+|+-.-
T Consensus 208 l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSg 277 (502)
T PRK14326 208 LLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSG 277 (502)
T ss_pred EEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCC
Confidence 4477766666555444455555543 2566788765443 7899998886 5688888754
No 86
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=20.67 E-value=4.8e+02 Score=27.87 Aligned_cols=99 Identities=17% Similarity=0.319 Sum_probs=50.7
Q ss_pred CCCceeeccccccccCCCCcCcccccccCCCccccCCCccchhhHHHHHHHHHHHH----HhcCCCCCCEEEeecccCCC
Q 011636 196 GGPFTVNIYPFISLYIDSNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRAL----QKNGYGNLPIIIGEIGWPTD 271 (480)
Q Consensus 196 ~spf~vNiYPyf~~~~~~~i~l~~AlF~~~~~~~~d~~~~Y~nlfda~~Dav~~a~----~~~g~~~~~vvVsETGWPs~ 271 (480)
=||++|| |||+.|++-+ |.... |. .-+-+.+|++.+.+ +.-|.+.+|.||-- ...
T Consensus 208 IDPWlIn--p~f~~c~~vd-------F~~~~------G~---e~lA~~Vd~~L~kir~KY~eYgI~e~PfViVK---ADa 266 (403)
T TIGR02049 208 IDPWLIN--PYFEKCDGID-------FDDRE------GE---DALATAVDQVLSKTQKKYEEYGIHTQPYVIVK---ADA 266 (403)
T ss_pred CCccccc--HhhhccCCcC-------CCccc------cH---HHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEE---cCC
Confidence 3899988 7788876543 33221 21 33344566665554 34477788988875 333
Q ss_pred CCCC------CCHHHHHHHHHHHHHHhhCC-CCCCCCCC--CccEEEeecccc
Q 011636 272 GDRN------ANNEYARRFNQGFMSHISGG-KGTPMRPG--PIDAYLFSLIDE 315 (480)
Q Consensus 272 G~~~------as~~na~~y~~~lv~~~~s~-~Gtp~rp~--~i~~yiF~~fdE 315 (480)
|.-+ -+.+.-...|+.-..++... .|.+...= .=-+|=||.+|+
T Consensus 267 GTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~ 319 (403)
T TIGR02049 267 GTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNE 319 (403)
T ss_pred CCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCC
Confidence 3322 34455555554333333322 24443321 012345777765
No 87
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.61 E-value=2.5e+02 Score=27.55 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=45.2
Q ss_pred hHHHHhhhCCCEEEEecCCCch---hHHHhhHHHHHHHHHHHhhhcccCCcceEEEEEecccccccCCCcchhhhHHHHH
Q 011636 62 GTLRALGKSGIEVMVGIPNDML---ASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLETYNGSFLRTTFPAL 138 (480)
Q Consensus 62 ~vL~A~~~tgi~V~lgv~n~~~---~~la~~~~~a~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am 138 (480)
..+++++..|++|++.|..... ..+..++....++++ ++..++.+ -.+.||-+==|-... . .......+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~--~~~DGIdiDwE~~~~----~-~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVS--YNLDGIDVDLEGPDV----T-FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHH--hCCCceeEEeeccCc----c-HhHHHHHH
Confidence 4566777789999988876432 223344443333433 34333332 234455444454311 1 23456678
Q ss_pred HHHHHHHHHcCC
Q 011636 139 RNVQAALIKAGL 150 (480)
Q Consensus 139 ~~vk~aL~~~gl 150 (480)
+++|++|++.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987765
No 88
>CHL00041 rps11 ribosomal protein S11
Probab=20.56 E-value=2e+02 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCEEEEec--CCc---hHHHHhhhCCCEEE
Q 011636 40 ETVVNLLRDNGFQKAKLFD--ADY---GTLRALGKSGIEVM 75 (480)
Q Consensus 40 ~~vv~llk~~~i~~VRiY~--~d~---~vL~A~~~tgi~V~ 75 (480)
+++.+.++++|++.|+++= ..+ .++++|+..||+|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3455677788999988884 333 78999999999865
No 89
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.44 E-value=2.4e+02 Score=22.59 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=37.0
Q ss_pred hHHHHHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecCCCch
Q 011636 39 PETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDML 83 (480)
Q Consensus 39 ~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~n~~~ 83 (480)
....+++|...+++.|=.-...+...+.|...||+|+.+ ...++
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i 85 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDI 85 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBH
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCH
Confidence 456788888899999988888889999999999999999 44444
No 90
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=20.29 E-value=1.8e+02 Score=28.05 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=34.7
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHhhhCCCEEEEecCCC
Q 011636 43 VNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPND 81 (480)
Q Consensus 43 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~lgv~n~ 81 (480)
+++|+.+||++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999988888899999998888764
Done!