Query 011637
Match_columns 480
No_of_seqs 199 out of 313
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 2.3E-39 5E-44 267.9 -2.9 78 185-262 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 41.1 13 0.00029 32.9 1.0 18 223-240 26-43 (94)
3 PRK00241 nudC NADH pyrophospha 36.1 11 0.00023 37.6 -0.3 36 198-234 92-127 (256)
4 PF12108 SF3a60_bindingd: Spli 32.7 16 0.00034 26.0 0.2 12 194-205 15-26 (28)
5 PRK06424 transcription factor; 29.5 30 0.00064 32.3 1.4 21 215-235 14-34 (144)
6 PF09297 zf-NADH-PPase: NADH p 22.6 23 0.00049 24.7 -0.5 31 203-234 1-31 (32)
7 COG2502 AsnA Asparagine synthe 22.1 32 0.00069 35.9 0.2 16 14-29 116-131 (330)
8 KOG4173 Alpha-SNAP protein [In 21.0 35 0.00076 34.5 0.3 31 184-214 80-115 (253)
9 COG2816 NPY1 NTP pyrophosphohy 20.4 30 0.00065 35.8 -0.4 35 199-234 105-139 (279)
10 PF14776 UNC-79: Cation-channe 18.9 70 0.0015 35.8 2.0 28 205-232 262-298 (525)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=2.3e-39 Score=267.86 Aligned_cols=78 Identities=67% Similarity=1.219 Sum_probs=63.3
Q ss_pred ceeeCCCchhhhcchhhhhccccchhhcCCCeEEECCchhhHhHHhhcccCCccccccchhHHHHHHHHHhhhccCCc
Q 011637 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262 (480)
Q Consensus 185 ~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD~~KRSCR~rLa~HN~RRRk~~~ 262 (480)
+||||||++||+.+|+||+||||||.|+|||+|+++|+++||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=41.13 E-value=13 Score=32.85 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=14.8
Q ss_pred hhhHhHHhhcccCCcccc
Q 011637 223 ERRFCQQCSRFHGLSEFD 240 (480)
Q Consensus 223 ~qRFCQQCsRFH~L~EFD 240 (480)
.-|+||+|.++|+..|=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876544
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=36.12 E-value=11 Score=37.61 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.3
Q ss_pred chhhhhccccchhhcCCCeEEECCchhhHhHHhhccc
Q 011637 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234 (480)
Q Consensus 198 ~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 234 (480)
+-.+|++||-|..+-....+. .+...|.|..|++.|
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEE
Confidence 457999999999888765554 455578899998644
No 4
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=32.71 E-value=16 Score=25.98 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=8.3
Q ss_pred hhhcchhhhhcc
Q 011637 194 DLSSAKDYHRKH 205 (480)
Q Consensus 194 dLs~~K~YhrRh 205 (480)
-|..+|+||+||
T Consensus 15 rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 15 RLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhC
Confidence 366778888886
No 5
>PRK06424 transcription factor; Provisional
Probab=29.55 E-value=30 Score=32.28 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=18.7
Q ss_pred CeEEECCchhhHhHHhhcccC
Q 011637 215 PKVIVGGLERRFCQQCSRFHG 235 (480)
Q Consensus 215 p~V~v~G~~qRFCQQCsRFH~ 235 (480)
-+|+|+|.+.+-|..|.+|=.
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~ 34 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGT 34 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCC
Confidence 478999999999999998854
No 6
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.56 E-value=23 Score=24.73 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=17.5
Q ss_pred hccccchhhcCCCeEEECCchhhHhHHhhccc
Q 011637 203 RKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234 (480)
Q Consensus 203 rRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 234 (480)
++||-|... -+|++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~C-G~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGRC-GAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TTT---BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCcC-CccccCCCCcCEeECCCCcCEe
Confidence 456777654 4667777777788888887654
No 7
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=22.12 E-value=32 Score=35.88 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.6
Q ss_pred ccccccccccCccccc
Q 011637 14 QWDWENLIMFNATAAE 29 (480)
Q Consensus 14 ~WdWEnl~~~~~~~~e 29 (480)
|||||.+++-+.+..+
T Consensus 116 QWDWEkvi~~g~rNl~ 131 (330)
T COG2502 116 QWDWEKVIPDGDRNLA 131 (330)
T ss_pred ccchhhhcCCccccHH
Confidence 8999999987765443
No 8
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.04 E-value=35 Score=34.53 Aligned_cols=31 Identities=32% Similarity=0.659 Sum_probs=22.3
Q ss_pred cceeeCCCchhhhcchh----hhhcc-ccchhhcCC
Q 011637 184 ALCQVEGCGLDLSSAKD----YHRKH-RVCENHSKS 214 (480)
Q Consensus 184 ~~CQVeGC~~dLs~~K~----YhrRh-rVCe~HsKA 214 (480)
-.|||.||..-+..+-+ ||-|| -+|-++.++
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~ 115 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRA 115 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhcccchhHHHHHh
Confidence 46999999998888864 55555 366666554
No 9
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.35 E-value=30 Score=35.76 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=28.4
Q ss_pred hhhhhccccchhhcCCCeEEECCchhhHhHHhhccc
Q 011637 199 KDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234 (480)
Q Consensus 199 K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 234 (480)
-++|++||.|..+ -.++....|...|-|++|+.-|
T Consensus 105 ~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 105 LEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 4679999999854 5677778888899999998655
No 10
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=18.94 E-value=70 Score=35.83 Aligned_cols=28 Identities=36% Similarity=0.693 Sum_probs=20.1
Q ss_pred cccchhhcCCCeEEE---------CCchhhHhHHhhc
Q 011637 205 HRVCENHSKSPKVIV---------GGLERRFCQQCSR 232 (480)
Q Consensus 205 hrVCe~HsKAp~V~v---------~G~~qRFCQQCsR 232 (480)
.|-|.-+.|..+|+- ++...|+||||..
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch~ 298 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCHS 298 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHhh
Confidence 355666667766663 7788999999953
Done!