Query 011638
Match_columns 480
No_of_seqs 135 out of 1515
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.3E-57 4.9E-62 451.0 35.6 404 31-469 33-437 (437)
2 PTZ00206 amino acid transporte 100.0 3E-55 6.5E-60 448.6 32.2 399 35-467 59-465 (467)
3 KOG1304 Amino acid transporter 100.0 3.4E-54 7.3E-59 420.4 30.5 390 33-466 44-449 (449)
4 PLN03074 auxin influx permease 100.0 4.2E-49 9E-54 401.3 33.3 396 35-480 45-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1E-52 2.2E-57 427.8 -0.6 403 34-463 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 3.2E-44 6.9E-49 355.4 29.2 401 33-469 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 3.8E-41 8.3E-46 309.4 6.8 411 29-476 110-524 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.3E-31 2.8E-36 269.3 32.9 393 31-460 4-409 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.9E-24 8.5E-29 213.7 33.4 352 35-436 2-367 (394)
10 PRK10483 tryptophan permease; 99.9 4.1E-24 8.8E-29 211.5 32.1 356 31-434 6-373 (414)
11 PRK09664 tryptophan permease T 99.9 1.5E-23 3.2E-28 207.3 32.0 355 34-434 7-374 (415)
12 PRK15132 tyrosine transporter 99.9 3.7E-23 8.1E-28 205.7 31.6 348 37-435 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 3.3E-23 7.2E-28 208.6 26.1 345 42-434 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 4.4E-20 9.5E-25 182.7 33.0 370 39-436 22-417 (443)
15 TIGR00814 stp serine transport 99.9 3.8E-19 8.2E-24 177.6 29.1 367 38-438 5-383 (397)
16 PRK10655 potE putrescine trans 99.7 3.1E-14 6.8E-19 146.1 35.0 243 32-301 4-247 (438)
17 PRK10249 phenylalanine transpo 99.7 5.4E-14 1.2E-18 144.8 34.1 378 19-433 6-394 (458)
18 PRK10435 cadB lysine/cadaverin 99.7 7.4E-14 1.6E-18 143.0 33.9 245 31-303 2-247 (435)
19 PRK15049 L-asparagine permease 99.7 8.7E-14 1.9E-18 144.5 34.6 369 31-433 25-405 (499)
20 PRK10644 arginine:agmatin anti 99.7 2.7E-13 6E-18 139.4 34.6 245 30-303 4-251 (445)
21 TIGR00905 2A0302 transporter, 99.7 5.3E-13 1.2E-17 138.2 35.1 252 32-303 5-258 (473)
22 TIGR01773 GABAperm gamma-amino 99.7 3.7E-13 8.1E-18 138.7 33.7 249 30-303 8-261 (452)
23 PRK11387 S-methylmethionine tr 99.7 4.9E-13 1.1E-17 138.4 33.9 298 31-351 11-318 (471)
24 PRK11049 D-alanine/D-serine/gl 99.6 7.7E-13 1.7E-17 136.8 35.1 249 29-300 15-268 (469)
25 TIGR03810 arg_ornith_anti argi 99.6 8.2E-13 1.8E-17 136.6 34.8 372 34-434 1-380 (468)
26 PRK10238 aromatic amino acid t 99.6 5.5E-13 1.2E-17 137.3 32.8 369 30-433 8-385 (456)
27 PRK10746 putative transport pr 99.6 1.1E-12 2.4E-17 135.1 34.5 374 27-434 3-388 (461)
28 TIGR00911 2A0308 L-type amino 99.6 3.3E-13 7.1E-18 140.9 30.4 254 28-303 36-295 (501)
29 TIGR00909 2A0306 amino acid tr 99.6 7.9E-13 1.7E-17 135.5 31.6 299 33-353 2-309 (429)
30 TIGR00930 2a30 K-Cl cotranspor 99.6 1.8E-12 3.8E-17 142.5 34.4 253 32-299 74-336 (953)
31 PRK10580 proY putative proline 99.6 4.5E-12 9.8E-17 130.8 35.5 245 30-298 5-254 (457)
32 PRK11021 putative transporter; 99.6 4.7E-12 1E-16 128.8 34.8 355 37-434 2-362 (410)
33 TIGR00906 2A0303 cationic amin 99.6 1.9E-12 4.1E-17 136.0 31.6 376 30-432 24-409 (557)
34 TIGR00913 2A0310 amino acid pe 99.6 5.5E-12 1.2E-16 131.0 34.4 244 33-297 1-251 (478)
35 PRK10836 lysine transporter; P 99.6 7.7E-12 1.7E-16 130.1 35.1 255 27-303 8-265 (489)
36 PRK11357 frlA putative fructos 99.6 4.3E-12 9.2E-17 130.6 31.2 245 30-299 4-251 (445)
37 KOG1287 Amino acid transporter 99.5 7.9E-13 1.7E-17 131.5 21.9 368 28-436 6-388 (479)
38 TIGR00908 2A0305 ethanolamine 99.5 1.6E-11 3.5E-16 126.2 32.2 240 31-297 4-245 (442)
39 COG1113 AnsP Gamma-aminobutyra 99.5 3.5E-12 7.5E-17 125.0 24.3 368 28-433 7-388 (462)
40 PRK10197 gamma-aminobutyrate t 99.5 6.2E-11 1.3E-15 121.8 32.3 350 45-433 3-367 (446)
41 TIGR00912 2A0309 spore germina 99.5 3.6E-11 7.8E-16 120.2 27.1 239 35-307 2-242 (359)
42 PF13520 AA_permease_2: Amino 99.5 1E-10 2.2E-15 119.8 29.7 294 37-355 2-305 (426)
43 COG0833 LysP Amino acid transp 99.4 3.9E-10 8.5E-15 113.0 26.7 366 31-432 41-426 (541)
44 COG0531 PotE Amino acid transp 99.4 1.3E-09 2.8E-14 113.0 31.8 290 29-342 7-306 (466)
45 TIGR03428 ureacarb_perm permea 99.3 2.2E-08 4.7E-13 104.0 37.3 261 29-304 8-274 (475)
46 TIGR00907 2A0304 amino acid pe 99.3 1.2E-08 2.6E-13 106.2 34.5 259 30-303 8-277 (482)
47 PRK15238 inner membrane transp 99.3 3.6E-08 7.8E-13 102.9 35.8 255 32-299 5-267 (496)
48 TIGR03813 put_Glu_GABA_T putat 99.3 1.3E-08 2.7E-13 105.7 31.7 248 35-304 2-255 (474)
49 TIGR00910 2A0307_GadC glutamat 99.3 1.3E-08 2.8E-13 106.2 31.4 239 33-296 3-247 (507)
50 KOG1286 Amino acid transporter 99.2 2.3E-10 5E-15 118.3 17.1 376 30-432 26-421 (554)
51 PF00324 AA_permease: Amino ac 99.1 1.9E-09 4.1E-14 112.1 15.1 290 45-351 6-317 (478)
52 PF03845 Spore_permease: Spore 99.1 7.4E-08 1.6E-12 94.7 24.7 236 35-306 1-237 (320)
53 KOG3832 Predicted amino acid t 98.9 1.7E-08 3.7E-13 87.9 10.4 218 41-269 17-302 (319)
54 KOG1289 Amino acid transporter 98.7 4.1E-06 8.9E-11 84.4 23.4 260 30-305 44-314 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.0002 4.3E-09 73.7 29.5 193 104-306 77-274 (442)
56 COG3949 Uncharacterized membra 98.4 0.00032 7E-09 66.6 24.9 103 40-149 7-112 (349)
57 PRK09442 panF sodium/panthothe 98.3 0.0048 1E-07 64.3 34.9 154 30-203 37-195 (483)
58 PRK12488 acetate permease; Pro 98.3 0.0081 1.8E-07 63.5 35.5 152 31-204 64-218 (549)
59 PRK11375 allantoin permease; P 98.3 0.0055 1.2E-07 63.6 33.1 227 64-306 57-294 (484)
60 TIGR02119 panF sodium/pantothe 98.2 0.0098 2.1E-07 61.8 34.4 153 30-202 36-193 (471)
61 PF00474 SSF: Sodium:solute sy 98.1 0.00066 1.4E-08 69.1 22.9 150 33-203 5-157 (406)
62 TIGR02358 thia_cytX probable h 98.1 0.0083 1.8E-07 60.5 29.5 227 38-305 7-234 (386)
63 TIGR00813 sss transporter, SSS 97.9 0.014 3E-07 59.5 28.4 149 33-202 2-152 (407)
64 TIGR02711 symport_actP cation/ 97.9 0.05 1.1E-06 57.6 35.2 150 31-202 64-216 (549)
65 COG0591 PutP Na+/proline sympo 97.9 0.015 3.3E-07 60.5 27.8 152 31-202 35-191 (493)
66 PRK11017 codB cytosine permeas 97.9 0.04 8.6E-07 56.0 30.5 205 64-304 39-244 (404)
67 COG1457 CodB Purine-cytosine p 97.9 0.028 6.1E-07 56.7 27.9 180 106-313 84-266 (442)
68 TIGR00796 livcs branched-chain 97.7 0.044 9.5E-07 54.7 26.6 75 44-129 3-80 (378)
69 TIGR03648 Na_symport_lg probab 97.6 0.14 3.1E-06 54.2 37.7 151 31-202 29-181 (552)
70 PRK09395 actP acetate permease 97.6 0.15 3.3E-06 54.0 35.9 150 31-202 66-218 (551)
71 COG1953 FUI1 Cytosine/uracil/t 97.5 0.13 2.8E-06 52.3 30.5 199 103-314 103-317 (497)
72 TIGR02121 Na_Pro_sym sodium/pr 97.4 0.22 4.9E-06 51.9 32.1 157 31-203 33-193 (487)
73 PF02554 CstA: Carbon starvati 97.4 0.004 8.6E-08 60.6 13.8 158 24-200 40-197 (376)
74 KOG2082 K+/Cl- cotransporter K 97.2 0.23 4.9E-06 52.5 24.3 109 34-146 113-222 (1075)
75 KOG2083 Na+/K+ symporter [Inor 97.0 0.0027 5.9E-08 64.8 8.0 237 37-295 31-275 (643)
76 PRK00701 manganese transport p 96.9 0.61 1.3E-05 47.8 29.4 75 68-148 65-139 (439)
77 KOG1288 Amino acid transporter 96.9 0.084 1.8E-06 55.0 18.1 233 55-300 88-351 (945)
78 PF02133 Transp_cyt_pur: Perme 96.9 0.01 2.2E-07 61.1 11.7 247 32-301 5-259 (440)
79 PRK15419 proline:sodium sympor 96.8 0.91 2E-05 47.6 32.5 154 31-202 37-196 (502)
80 COG1914 MntH Mn2+ and Fe2+ tra 96.7 0.77 1.7E-05 46.4 28.6 106 36-149 17-123 (416)
81 PRK10484 putative transporter; 96.7 1.1 2.5E-05 47.1 34.9 158 30-203 34-198 (523)
82 PRK15015 carbon starvation pro 96.2 0.032 6.8E-07 58.2 10.2 116 23-144 70-186 (701)
83 TIGR00835 agcS amino acid carr 96.0 2 4.4E-05 43.6 27.1 88 34-124 45-138 (425)
84 COG1966 CstA Carbon starvation 95.8 0.078 1.7E-06 54.1 10.4 126 14-144 30-155 (575)
85 PF01566 Nramp: Natural resist 95.7 2.5 5.5E-05 42.1 24.1 79 104-196 43-123 (358)
86 PF05525 Branch_AA_trans: Bran 95.4 3.5 7.6E-05 41.8 26.7 74 37-122 4-81 (427)
87 PRK15433 branched-chain amino 94.7 5.8 0.00013 40.4 25.4 74 37-122 9-86 (439)
88 TIGR00796 livcs branched-chain 92.9 0.99 2.1E-05 45.2 10.8 76 104-193 256-331 (378)
89 COG4147 DhlC Predicted symport 92.9 12 0.00026 38.1 30.6 182 103-301 104-294 (529)
90 PF01235 Na_Ala_symp: Sodium:a 92.5 13 0.00029 37.6 21.0 63 31-94 14-80 (416)
91 COG1114 BrnQ Branched-chain am 91.3 2.9 6.3E-05 41.7 11.6 116 61-195 226-341 (431)
92 PF05525 Branch_AA_trans: Bran 90.6 2 4.3E-05 43.6 10.0 109 58-184 221-329 (427)
93 KOG2466 Uridine permease/thiam 89.9 11 0.00024 38.5 14.2 264 32-314 52-331 (572)
94 PLN00150 potassium ion transpo 89.8 34 0.00074 37.4 19.1 118 172-301 217-339 (779)
95 PLN00151 potassium transporter 88.9 40 0.00087 37.0 18.4 118 172-301 277-399 (852)
96 PLN00148 potassium transporter 82.3 83 0.0018 34.5 20.0 120 170-301 198-322 (785)
97 PLN00149 potassium transporter 79.4 1E+02 0.0023 33.8 21.3 120 172-303 201-325 (779)
98 PRK15433 branched-chain amino 77.8 22 0.00048 36.3 10.5 104 61-184 228-332 (439)
99 KOG1289 Amino acid transporter 63.5 1.5E+02 0.0033 31.0 12.8 46 104-149 326-371 (550)
100 COG0814 SdaC Amino acid permea 63.0 1.8E+02 0.0039 29.6 20.1 152 274-434 221-376 (415)
101 PF00209 SNF: Sodium:neurotran 62.3 2.1E+02 0.0046 30.1 28.6 102 37-150 6-112 (523)
102 KOG2349 Na+:iodide/myo-inosito 56.8 81 0.0018 33.4 9.8 247 32-304 43-303 (585)
103 PHA02764 hypothetical protein; 52.6 2.3E+02 0.0051 27.6 15.8 94 31-131 9-105 (399)
104 TIGR00794 kup potassium uptake 51.2 3.6E+02 0.0078 29.4 17.4 118 172-301 171-293 (688)
105 PRK04949 putative sulfate tran 51.2 1.9E+02 0.004 27.3 10.5 40 260-304 15-54 (251)
106 COG0733 Na+-dependent transpor 47.5 3.3E+02 0.0071 27.9 25.3 107 36-149 9-117 (439)
107 PRK11281 hypothetical protein; 47.4 2.8E+02 0.006 32.3 12.8 31 274-304 540-570 (1113)
108 TIGR01197 nramp NRAMP (natural 47.4 3.2E+02 0.0068 27.6 29.4 97 43-148 11-109 (390)
109 COG1114 BrnQ Branched-chain am 45.8 3.4E+02 0.0074 27.6 23.8 75 37-123 6-84 (431)
110 PRK09950 putative transporter; 43.1 4.2E+02 0.0091 27.8 12.4 155 66-226 350-506 (506)
111 PRK13183 psbN photosystem II r 40.0 31 0.00066 22.8 2.3 30 276-305 4-33 (46)
112 PRK09928 choline transport pro 39.8 4.5E+02 0.0098 28.7 12.3 70 130-199 416-486 (679)
113 PF12794 MscS_TM: Mechanosensi 39.4 3.9E+02 0.0084 26.4 13.0 40 274-313 44-83 (340)
114 PF05805 L6_membrane: L6 membr 38.4 86 0.0019 28.1 5.7 65 404-468 43-117 (195)
115 TIGR00909 2A0306 amino acid tr 37.0 2.9E+02 0.0062 28.0 10.4 47 104-150 265-311 (429)
116 PRK12768 CysZ-like protein; Re 37.0 3.4E+02 0.0074 25.3 9.8 29 262-295 8-36 (240)
117 COG4858 Uncharacterized membra 37.0 3E+02 0.0065 24.5 8.5 32 61-92 118-149 (226)
118 COG1292 BetT Choline-glycine b 36.6 1.6E+02 0.0035 30.8 8.1 90 125-217 407-496 (537)
119 PF03169 OPT: OPT oligopeptide 35.8 2.1E+02 0.0045 30.9 9.4 69 38-115 357-427 (624)
120 PF02468 PsbN: Photosystem II 34.6 39 0.00085 22.1 2.2 26 280-305 5-30 (43)
121 KOG1619 Cytochrome b [Energy p 33.3 4E+02 0.0087 24.7 10.7 97 241-345 56-152 (245)
122 CHL00020 psbN photosystem II p 32.6 33 0.00071 22.3 1.6 27 279-305 4-30 (43)
123 cd08765 Cyt_b561_CYBRD1 Verteb 31.8 2.9E+02 0.0063 23.8 7.7 68 274-345 44-111 (153)
124 PF02705 K_trans: K+ potassium 30.5 6.7E+02 0.015 26.5 20.9 70 191-270 154-228 (534)
125 PF13520 AA_permease_2: Amino 29.2 4.8E+02 0.011 26.2 10.5 47 105-151 260-306 (426)
126 TIGR00842 bcct choline/carniti 28.4 6.8E+02 0.015 25.9 13.2 73 128-200 361-435 (453)
127 PF01235 Na_Ala_symp: Sodium:a 26.3 4.9E+02 0.011 26.5 9.5 80 110-202 300-379 (416)
128 PLN02680 carbon-monoxide oxyge 26.0 5.4E+02 0.012 23.9 11.8 68 274-345 76-143 (232)
129 KOG4812 Golgi-associated prote 23.8 1.5E+02 0.0032 27.4 4.7 70 387-460 159-242 (262)
130 COG1115 AlsT Na+/alanine sympo 23.3 8.3E+02 0.018 25.1 24.9 64 32-96 59-126 (452)
131 cd08763 Cyt_b561_CYB561 Verteb 23.0 4.7E+02 0.01 22.2 8.4 68 274-345 37-104 (143)
132 PF05915 DUF872: Eukaryotic pr 21.7 4.4E+02 0.0096 21.4 7.9 66 37-108 40-112 (115)
133 COG5264 VTC1 Vacuolar transpor 21.2 4.7E+02 0.01 21.5 7.0 56 32-91 31-86 (126)
134 PRK03356 L-carnitine/gamma-but 20.3 1E+03 0.022 25.0 12.8 70 130-199 412-482 (504)
135 PF11085 YqhR: Conserved membr 20.2 5.8E+02 0.013 22.4 7.4 21 182-202 122-142 (173)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-57 Score=451.00 Aligned_cols=404 Identities=41% Similarity=0.710 Sum_probs=358.1
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
.++|++||+++.++.++.++|.|+|++|||++++||+.|++++++.++++.||..+|.+|.+.++++.++|.++|.|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
++||+++++++...+.+.++++|+.|++..+|++..+++..+.+.. ..+.+.|+++++++.+|++++||++.++
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~ 186 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS 186 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence 9999999999999999999999999999999999999998765432 2335678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCC
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 270 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 270 (480)
++|..+.++.+.+.++.+.+.+.+.......+..... .++ .+ ..+++++++.|+|.||..+|||+++||+|
T Consensus 187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~~~-~~-----~~f~a~g~iaFaf~gH~v~peIq~tMk~p- 257 (437)
T KOG1303|consen 187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--LGT-IP-----TVFTALGIIAFAYGGHAVLPEIQHTMKSP- 257 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--CCC-Cc-----chhhhhhheeeeecCCeeeeehHhhcCCc-
Confidence 9999999999988887777766665443222111111 110 00 11899999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHH
Q 011638 271 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIE 350 (480)
Q Consensus 271 ~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 350 (480)
++|+|++.+++.+++++|+.+++.||++|||+++++++.|++ .|.|+...+++++.+|++.+|+++..|+.+.+|
T Consensus 258 ---~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E 332 (437)
T KOG1303|consen 258 ---PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVE 332 (437)
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHH
Confidence 569999999999999999999999999999999999999975 689999999999999999999999999999999
Q ss_pred HHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHHH
Q 011638 351 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIA 430 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~~~~l~ 430 (480)
++..+..++ + . ++....|.+.|..+++.+.++|..+|+|+++++++||....++++++|+++|++
T Consensus 333 ~~~~~~~~~--~-~------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~ 397 (437)
T KOG1303|consen 333 KLIGVKHPD--F-K------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL 397 (437)
T ss_pred HHhccCCcc--c-c------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987654332 1 0 022368999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011638 431 QKKIPKWSTKWLCLQIL-SVACLIITIAAAAGSIAGVVTD 469 (480)
Q Consensus 431 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~si~~ii~~ 469 (480)
.+|++++..+|+..+.+ .++++++++....+++++++.+
T Consensus 398 ~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 398 IKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999988888 6899999999999999988764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3e-55 Score=448.64 Aligned_cols=399 Identities=16% Similarity=0.194 Sum_probs=310.9
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
.++..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.++.++. +. .+|+|++++++|
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~~--~sY~~la~~~~G 132 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----NI--RTYEGVARVLLG 132 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CC--CCHHHHHHHHhC
Confidence 556789999999999999999999999999999999999999999999999999987742 22 399999999999
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHH
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 194 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (480)
|++++++++.+.+.++|.|++|+++.+|.++.+++....+... . .-..++..+.++..++++|++++|++++++++|.
T Consensus 133 ~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~-~-~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 133 PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL-K-QKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh-h-hccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 9999999999999999999999999999999888632110000 0 0011122344556778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCc-----ccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638 195 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT-----VSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 269 (480)
Q Consensus 195 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 269 (480)
+++.++++..+.++. +...++.+.+. +....++ ........+.+.++++++|||.||.+++++++|||+|
T Consensus 211 i~~~~i~~~vi~ivi---~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 211 IAVSFMVYLVIVIVV---HSCMNGLPENI--KNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHhhhhh---hhhcccCcccc--cccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 999876653332222 22222221110 0111000 0011112367899999999999999999999999998
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHH
Q 011638 270 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFI 349 (480)
Q Consensus 270 ~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 349 (480)
++ +|+.+++..++.+++++|..+|++||+.||++++++++.|++. ..+....++++++++.+..+||++.+|+|+.+
T Consensus 286 t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 286 SV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 76 8899999999999999999999999999999999999999831 23456678889999999999999999999999
Q ss_pred HHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011638 350 EKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYI 429 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~~~~l 429 (480)
++.+..+ .+ + .+ .+++...+..+.+.++++|+++|+++.+++++||++++.++|++|+++|+
T Consensus 363 ~~~~~~~--~~----~-----~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 363 YDVIGWD--AR----K-----VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred HHHhCCC--cc----c-----Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9875321 10 0 01 14455566667778889999999999999999999999999999999999
Q ss_pred HHhC---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011638 430 AQKK---IPKWSTKWLCLQILSVACLIITIAAAAGSIAGVV 467 (480)
Q Consensus 430 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii 467 (480)
+... ++....+|...+.++++|++.++.|||+++++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 8421 1112223445566788999999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-54 Score=420.42 Aligned_cols=390 Identities=19% Similarity=0.273 Sum_probs=333.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 33 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
++..|..++..|++++++|+|+|++|+||+++||+.|.+..++++.++.|+++.+++|.++...+.+....+|+|.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999998755444333346888887655
Q ss_pred ----------ccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhC
Q 011638 113 ----------LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ 182 (480)
Q Consensus 113 ----------~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~ 182 (480)
+||++|.+++..+.++++|.|++|+++++++++++.+.. ..-.++.+.|+.+..+..+++++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999821 11145667888999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011638 183 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEI 262 (480)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 262 (480)
+|++|.|+++|++++++.+. .+++..++..++.+...+.+. ..+..+....+|+.+|||+|+.++.|+
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~~~~~~~--------~~~~~~~~lf~GtaifafEGig~VLPl 263 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPPTSDLPA--------VTGWSGLPLFFGTAIFAFEGIGMVLPL 263 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCCcccccc--------ccchhhhHHHHHHHHHHhccceEEEeh
Confidence 99999999999999999874 444555666666552222222 223447889999999999999999999
Q ss_pred hhhcCCCCccchhhh---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhh
Q 011638 263 QDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQ 339 (480)
Q Consensus 263 ~~em~~p~~~~~~~~---~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~p 339 (480)
.++||+| ++++ +++..++.+++++|+.+|++||++||+++++.++.|+| + +|+.+.+++++.+.+..+||
T Consensus 264 En~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 264 ENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred hhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCc
Confidence 9999999 7899 99999999999999999999999999999999999997 4 89999999999999999999
Q ss_pred hhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhh
Q 011638 340 VFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPL 419 (480)
Q Consensus 340 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l 419 (480)
++++|..+.+|+.+.++..+ .++++..+.+|..++++++.+|..+||++.+++++||++++.+
T Consensus 337 LQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L 399 (449)
T KOG1304|consen 337 LQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLL 399 (449)
T ss_pred hhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHH
Confidence 99999999999987654322 1124778899999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011638 420 TVYFPVEMYIAQKKIPK---WSTKWLCLQILSVACLIITIAAAAGSIAGV 466 (480)
Q Consensus 420 ~~ilP~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~v~g~~~si~~i 466 (480)
.+++|+++++...+++. +.++++....++++|++..+.|+|.|+.++
T Consensus 400 ~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 400 ALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999876543 234445566778899999999999998753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.2e-49 Score=401.31 Aligned_cols=396 Identities=17% Similarity=0.230 Sum_probs=313.7
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCc--c--cccHHH
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS---GDPVTGK--R--NYTYVD 107 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~---~~~~~~~--~--~~~y~~ 107 (480)
.++..++.+++++..+|.|+|+||++|+++||++|++.++++++++.||++++.+++.+ .+++++. + ..+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999986432 1112221 1 137899
Q ss_pred HHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcc
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (480)
+++..+||+++.+..+...+++++.|+.|++..++.+..+.. .++.+.|++++.++++|++++|+++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCHH
Confidence 999999999999999999999999999999988877665422 3455778889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcC
Q 011638 188 QLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVK 267 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~ 267 (480)
+++++|.++..+++.....++...+.+ +.+ ++... ....+....+.++++++|+|+||..+||+++|||
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~-----~~~~~---~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~ 260 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSH---GQV-----EGVKH---SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW 260 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----CCCCC---CCchhHHHHHHHHHHHHHHhcccccHHHHHHhcc
Confidence 999999999887654332222222211 111 11100 0122445677888899999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc--ccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 268 SPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG--NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 268 ~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
+| ++++++...+...++.+|+.+|+.||+.|||++++ +.+.|+| .+. ...+++++++++...+||+++.|+
T Consensus 261 ~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~ 333 (473)
T PLN03074 261 KP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACTPL 333 (473)
T ss_pred Ch----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99 68999999999999999999999999999998764 4566665 222 467899999999999999999999
Q ss_pred HHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhH
Q 011638 346 FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPV 425 (480)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~ 425 (480)
.+..|+....+ + .+....|++.|+.+++.++++|+.+|+|+++++++||++++.+++++|+
T Consensus 334 ~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~ 394 (473)
T PLN03074 334 YFVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPS 394 (473)
T ss_pred HHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99988864321 1 0113678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC-----------CcchhH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCCCCCC
Q 011638 426 EMYIAQKKIP-----------KWSTKW----LCLQILSVACLIIT-IAAAAGSIAGVVTDLKSYKPFSTSY 480 (480)
Q Consensus 426 ~~~l~~~~~~-----------~~~~~~----~~~~~~~~~~~~~~-v~g~~~si~~ii~~~~~~~~f~~~~ 480 (480)
++|++.++++ ++..+| +....+++++.+++ +.|+|+|+.++++++++|+.|++.|
T Consensus 395 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 395 LAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred HHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence 9999865432 011123 33444555555554 6999999999999999999998865
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1e-52 Score=427.79 Aligned_cols=403 Identities=28% Similarity=0.385 Sum_probs=324.7
Q ss_pred ccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhc
Q 011638 34 RTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 113 (480)
Q Consensus 34 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (480)
||+|+++++++++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.++.++.+ ++++..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999988654 2223459999999999
Q ss_pred cCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHH
Q 011638 114 GGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLS 193 (480)
Q Consensus 114 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s 193 (480)
||++++++++++.+.++|.+++|++..+|.+.++++....+ ...++.++.++.+++++|++++|+++++++.|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999998854311 23456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccc
Q 011638 194 IVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSES 273 (480)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~ 273 (480)
.++.++++....+.+....... ...+.+...+ +.....+.++.+.++++++|||.||+++|++.+|||+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~- 224 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYG-PGEPSGVPSP-----PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF- 224 (409)
T ss_pred hhhhhccceeeeeecceeeeee-cccccccccc-----cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc-
Confidence 9999987653111111111111 1111111111 01223456789999999999999999999999999999531
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHh
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQA 353 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 353 (480)
+|++++...++.+++++|..+|+.||++||+++++|+++|++ +.++...++++++.++++.+||++.+|.++.+++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 302 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLL 302 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhe
Confidence 245699999999999999999999999999999999999986 334778899999999999999999999999999987
Q ss_pred cccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHHHHhC
Q 011638 354 HQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKK 433 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~~~~l~~~~ 433 (480)
.+..+.+ ++... .+.+.+++|+..|+++++.++++|..+||++++++++|+++++.+.|++|+++|++.++
T Consensus 303 ~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 303 FKRAASS----RDSPK-----NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred ecccccc----ccccc-----cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 5430000 00000 11222477889999999999999999999999999999999999999999999999988
Q ss_pred CCCcchhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 011638 434 IPKWSTKWLC-----LQILSVACLIITIAAAAGSI 463 (480)
Q Consensus 434 ~~~~~~~~~~-----~~~~~~~~~~~~v~g~~~si 463 (480)
+++++.+|+. .+.++++|++.++.|+|.++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 374 RKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 7765444432 33445667777777777664
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=355.41 Aligned_cols=401 Identities=20% Similarity=0.310 Sum_probs=316.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 33 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
+++.|.+.+++|+.|+++|+|++++|++|++.|.++|++++..++.++.++.+++.++.++. +++ +|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~~--ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GER--TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CCC--CHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999998853 333 999999999
Q ss_pred ccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCc-hhHHHHHHHHHhhCCCCcchhhH
Q 011638 113 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNP-YMIAFGIVEIVLSQIPDFDQLWW 191 (480)
Q Consensus 113 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~pl~~~~~l~~l~~ 191 (480)
+|+.++....+.......| |++|+++++|.++.+........+.... ..+++. |.+....++.||++.|+++++++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999976666666666666 6999999999999766643221111111 112233 56778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCc
Q 011638 192 LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS 271 (480)
Q Consensus 192 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~ 271 (480)
.|.++.++++...++++ ++.............. .++...+++.+.++|+++|||.||+++.++++|||||++
T Consensus 154 tS~~s~~~~~~fv~~vv----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVV----YKYFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 99999999876443333 3333321100000000 112223368999999999999999999999999999987
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCc----hHHHHHHHHHHHHHHHhhhhhhhchHH
Q 011638 272 ESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY----WLLDIANAAIVIHLVGAYQVFCQPLFA 347 (480)
Q Consensus 272 ~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~ 347 (480)
+++.++...+...++++|..+|.+||+.|||++.+|++.+++..... +....++..+.++++..+|+..+|+|.
T Consensus 226 --~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 226 --KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 89999999999999999999999999999999999999998743332 245789999999999999999999999
Q ss_pred HHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHH
Q 011638 348 FIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEM 427 (480)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~~~ 427 (480)
.++..+....++. + +....++++.+..++..+++.|+.+|+++++++++||+++..+.|++|+++
T Consensus 304 ~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~ 368 (411)
T KOG1305|consen 304 NLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALY 368 (411)
T ss_pred HHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHh
Confidence 9988765544331 0 111255778899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011638 428 YIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTD 469 (480)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~ 469 (480)
|++..|.+ .++....+...++++.++++|++.-+.++..+
T Consensus 369 yl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 369 YLKASKKK--SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hheeeccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988762 22333455556677777788877777776543
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-41 Score=309.40 Aligned_cols=411 Identities=17% Similarity=0.197 Sum_probs=332.0
Q ss_pred CCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc---ccccH
Q 011638 29 DGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGK---RNYTY 105 (480)
Q Consensus 29 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~---~~~~y 105 (480)
.|+.+.|.+-+++.+|..|++-|.=+++||+|....||. ++..++.++.+.+||..+|++|....++ +|+ ...+|
T Consensus 110 ~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsY 187 (524)
T KOG4303|consen 110 HGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSY 187 (524)
T ss_pred CCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhH
Confidence 356677889999999999999999999999999999987 9999999999999999999999987664 332 12699
Q ss_pred HHHHHHhccCc-ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 106 VDAVRSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 106 ~~~~~~~~G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
.+++..+++|. |++.+.+.+.+.+..+|+.|++..+|.+..-++.. ..+..-|+++..+.++|.+++|
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk 256 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLK 256 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHH
Confidence 99999999985 55899999999999999999999999998766532 3445779999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 185 DFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
++|..+.+|+..++.-+..-.+++.++.... .+.. |..+....+..+++..+|+++|+|+-|..+|+...
T Consensus 257 ~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-~dW~---------wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEG 326 (524)
T KOG4303|consen 257 DLKIVSRLSFFCTISHLVINLIMVLYCLSFV-SDWS---------WSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEG 326 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc---------ceeEEEEEEcccCceEEEEEEEeeeceeecccccc
Confidence 9999888888887776654333333333222 1211 22222233344677889999999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhc
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQP 344 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 344 (480)
.|++| .+++..+.++-+..+++-.++|.+||++||++++..|.+|+|. .-...+++++.++.-+.|||+=++.
T Consensus 327 NM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyA 399 (524)
T KOG4303|consen 327 NMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYA 399 (524)
T ss_pred ccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHH
Confidence 99999 5789999999999999999999999999999999999999862 2345689999999999999999988
Q ss_pred hHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhh
Q 011638 345 LFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFP 424 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP 424 (480)
..+.+|+-+.+..|...|-.-. + +..+.+-+...+|.++++.+.+.|+.+|.|..+++++|++++++++|++|
T Consensus 400 AvelLe~nlF~g~p~t~Fpscy-s------~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP 472 (524)
T KOG4303|consen 400 AVELLENNLFLGYPQTPFPSCY-S------PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWP 472 (524)
T ss_pred HHHHHHHhhhcCCCCCCCceee-C------CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHH
Confidence 8888888665544443221100 0 00112234446799999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 011638 425 VEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPF 476 (480)
Q Consensus 425 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~~~~~~~f 476 (480)
+++|++++.+.....+......+++.|..+++.|.|-|-..+++++++..+|
T Consensus 473 ~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 473 ALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred HHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 9999999876544444445667788899999999999999999999887654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=269.28 Aligned_cols=393 Identities=17% Similarity=0.185 Sum_probs=285.7
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
+.+.+.+..+++.++.++++|+|+|++|++++..|+.++++++++.+.+++++.+++.|+..+.+.. ..++.++++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~ 79 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVE 79 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHH
Confidence 3455668999999999999999999999999999999999999999999999999999998865432 138999999
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
+.+||++++++++.+.+.+++.+++|.+..+|.++..++.... . + .+++....++++.++.++++.++...++
T Consensus 80 ~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-~---~---~~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 80 DYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-L---N---PLPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-c---C---CcchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 9999999999999999999999999999999999999985221 0 0 1456777888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCC
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 270 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 270 (480)
..+.+....+.+..+. ..+.....++. .... ++.. .+....+...++|+++|||+||+++|++.+|||+++
T Consensus 153 ~ts~l~~~~v~~~~~l----~~~~~~~~~~~--~l~~--~~~~-~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~ 223 (415)
T COG0814 153 ITSLLVFGKVIYLVLL----VVYLIPHWNPA--NLFA--LPSA-SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223 (415)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhcccCHH--HHhc--cccc-chhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence 9999998887653322 22222221111 0000 0000 012334777999999999999999999999999987
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCc------------hHHHHHHHHHHHHHHHhh
Q 011638 271 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY------------WLLDIANAAIVIHLVGAY 338 (480)
Q Consensus 271 ~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------------~~~~~~~~~~~i~~~~s~ 338 (480)
+ ++.+|+...+..+..++|..++..+|..+|++++++++++++. ... +.....+++..+.+.++|
T Consensus 224 ~--~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 224 K--KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ-NISLLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc-hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3 3499999999999999999999999999999999999998751 111 123333444444444544
Q ss_pred hhhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccc-hhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhh
Q 011638 339 QVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLN-LFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFW 417 (480)
Q Consensus 339 pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~ 417 (480)
--.....++.+++.+.+ .++ + + +|.+.. ........+.+.....++...|+.+.+.+.+|+....
T Consensus 301 lgv~lg~~~~~~~~~~~--~~~----~------~--~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~ 366 (415)
T COG0814 301 LGVYLGLFEGLADLFKK--SNS----K------P--GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIP 366 (415)
T ss_pred hCchhhHHHhhhHHHHh--ccC----c------c--cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33333444555544332 010 0 0 122211 2333445555666777888889999999999999999
Q ss_pred hhHhhhhHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011638 418 PLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAA 460 (480)
Q Consensus 418 ~l~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 460 (480)
.+.++.|...+.+....++.+.++.....+.++|+...+...+
T Consensus 367 ~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 367 ALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999888765544433222344445555555444433
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=3.9e-24 Score=213.75 Aligned_cols=352 Identities=15% Similarity=0.185 Sum_probs=249.7
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
+.+.+++++.+.++++|+|+|+||.+.+..|..++++++++++.+++++..++.|...+.++ ..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence 44789999999999999999999999999999999999999999999999999998875433 2499999999999
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHH
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 194 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (480)
|+++++..+...+..++.+++|..-.++.++++++.... ...++..-.+++.++...+... ..+...+++.
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~ 147 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINR 147 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 999999999999999999999999999999999975321 1222233333443333333222 2223333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccch
Q 011638 195 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK 274 (480)
Q Consensus 195 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~ 274 (480)
.-+...+..........+.+...+...+. .....+....+.++|++++||..|+.+|++.+.+++.. |
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~---------~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~ 215 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDA---------PPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---K 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhcc---------ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---H
Confidence 22222222111122122222111111110 01122334667999999999999999999999999764 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc-----------CCCCCc--ccccccccCCCchHHHHHHHHHHHHHHHhhhhh
Q 011638 275 TMKKASLISVGVTTLFYMLCGCFGYAAF-----------GDLSPG--NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVF 341 (480)
Q Consensus 275 ~~~~~~~~s~~i~~~~Y~~~g~~gy~~f-----------G~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 341 (480)
|.+|++..+..+..++|++.-...-..- |++..+ ..+.+. ....+......++-.+.+.+||-=.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANV--SGSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644443311 111111 111111 2345667788999999999999888
Q ss_pred hhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhH
Q 011638 342 CQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLT 420 (480)
Q Consensus 342 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~Ga~~~~~l~ 420 (480)
...++|.+.+.+++ +++ ...|........++++++|...|+ |...+++.| ...+.+.
T Consensus 294 ~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 294 YLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 88889999887643 111 123444455666778899999997 889999999 9999999
Q ss_pred hhhhHHHHHHHhCCCC
Q 011638 421 VYFPVEMYIAQKKIPK 436 (480)
Q Consensus 421 ~ilP~~~~l~~~~~~~ 436 (480)
.++|+++.+|.|++++
T Consensus 352 ~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 352 GILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHcccC
Confidence 9999999999876654
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=4.1e-24 Score=211.48 Aligned_cols=356 Identities=13% Similarity=0.086 Sum_probs=254.0
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
..+++++.+.+++.+.++.||+|+|++|.+.++.|+.++++++++++.+..||+.++.|...+.++ ..++..+++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999998765432 248999999
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
+.+||.|+.+..++..+..|+.+++|+.-.++.+.+.++... . ..++..-.++++++.-.+... ..+...
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~--~-------~i~~~~~~llF~~~~~~iv~~-gt~~vd 150 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS--L-------NVPARAAGFGFALLVAFVVWL-STKAVS 150 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC--C-------CCcHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 999999999999999999999999999999999999987411 0 122233334555444444443 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCC
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 270 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 270 (480)
+++.+-....+...++.+.....+...+...+.. + .........+.++|+++++|..|+++|++.+.+++..
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~-----~---~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~ 222 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVA-----E---SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP 222 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc-----c---ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH
Confidence 4443333332222222222222221111111110 0 0111122567999999999999999999999998764
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------C-cc--cc-ccccc-CCCchHHHHHHHHHHHHHHHhhh
Q 011638 271 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS------P-GN--LL-TGFGF-YNPYWLLDIANAAIVIHLVGAYQ 339 (480)
Q Consensus 271 ~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~------~-~~--il-~~~~~-~~~~~~~~~~~~~~~i~~~~s~p 339 (480)
||.+|++..+..+..++|+..-..+...-+.+. + +| .+ ..+.. .+..+...+..++..+.+.+||-
T Consensus 223 ---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 223 ---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999986665555444221 1 11 11 22211 12345666788889999999998
Q ss_pred hhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q 011638 340 VFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWP 418 (480)
Q Consensus 340 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~Ga~~~~~ 418 (480)
=....++|.+.+.++.+ ++ ...|........++.+++|...|+ |-..+++.|.. ...
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 88888899999876532 11 012333445677889999999998 89999999976 678
Q ss_pred hHhhhhHHHHHHHhCC
Q 011638 419 LTVYFPVEMYIAQKKI 434 (480)
Q Consensus 419 l~~ilP~~~~l~~~~~ 434 (480)
+.-++|+++.++.||+
T Consensus 358 l~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 358 WAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8889999999998865
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=1.5e-23 Score=207.31 Aligned_cols=355 Identities=13% Similarity=0.059 Sum_probs=248.2
Q ss_pred ccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhc
Q 011638 34 RTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 113 (480)
Q Consensus 34 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (480)
+|.+.+..+..+.+++||+|+|++|.+-++.|+.++++.+++++.++.||+.++.|...+.+. ..++..++++.+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHc
Confidence 344788899999999999999999999999999999999999999999999999998765432 248999999999
Q ss_pred cCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHH
Q 011638 114 GGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLS 193 (480)
Q Consensus 114 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s 193 (480)
||.|+.+..++..+..|+.+++|+.-.|+.+.+.++... +. ..+...-.++++++.-.+.... .+...+++
T Consensus 82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~-------~i~~~~~~llF~~~~~~~v~~g-t~~vd~~n 152 (415)
T PRK09664 82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GY-------HANPRIVGICTAIFVASVLWIS-SLAASRIT 152 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cC-------CCcHHHHHHHHHHHHHHHHHhc-hhHHHHHH
Confidence 999999999999999999999999999999999986311 00 1222333345555444444433 24444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhh-HHHHHHHHHHHHHHhcccchhHhhhhhcCCCCcc
Q 011638 194 IVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQK-IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSE 272 (480)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~ 272 (480)
.+=....+...++.+.....+...+...+.+. ...... ....+.++|++++||+.|+++|++.+.+++..
T Consensus 153 r~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~-------~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~-- 223 (415)
T PRK09664 153 SLFLGLKIISFVIVFGSFFFQVDYSILRDATS-------TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK-- 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHhcCcc-------ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH--
Confidence 33222222211122222222221111111000 000011 12466899999999999999999999998664
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhh-----------hcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhh
Q 011638 273 SKTMKKASLISVGVTTLFYMLCGCFGYA-----------AFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVF 341 (480)
Q Consensus 273 ~~~~~~~~~~s~~i~~~~Y~~~g~~gy~-----------~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 341 (480)
|+.+|++..+..+..++|...=.+... ..|+++...+..-.......+...+..++..+.+.+||-=.
T Consensus 224 -~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 224 -DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998653333222 23333222111111112345777788899999999999888
Q ss_pred hhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhH
Q 011638 342 CQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLT 420 (480)
Q Consensus 342 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~Ga~~~~~l~ 420 (480)
...++|.+.+.++.+ ++ +..|........+++++++...|+ |-..++..|.. .+.+.
T Consensus 303 ~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~ 360 (415)
T PRK09664 303 TLGLFDYLADLFKID--NS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWA 360 (415)
T ss_pred HHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHH
Confidence 888899998876432 11 012333445677889999999998 89999999996 67888
Q ss_pred hhhhHHHHHHHhCC
Q 011638 421 VYFPVEMYIAQKKI 434 (480)
Q Consensus 421 ~ilP~~~~l~~~~~ 434 (480)
-++|+++.+|.||+
T Consensus 361 ~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 361 VIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=3.7e-23 Score=205.67 Aligned_cols=348 Identities=12% Similarity=0.146 Sum_probs=249.1
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCc
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 116 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~ 116 (480)
+.+.+++.+.+++||+|+|++|.+.+..|..++++++++++.+..|+++++.|...+.++ ..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChH
Confidence 688999999999999999999999999999999999999999999999999996554321 248999999999999
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHH
Q 011638 117 QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVA 196 (480)
Q Consensus 117 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 196 (480)
++++..+...+..+..+.+|..-.++.+...++++..+ +.+.....+++.++.-..... ..|...++.-+=
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L 149 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 99999999999999999999999999998888753211 112233444444433333322 223333333322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccchhh
Q 011638 197 AVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTM 276 (480)
Q Consensus 197 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~ 276 (480)
....+...+......+.+...+.-.+. . . .. ...+.++|++.+||..|+++|++.+.+++.. ||.
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-----~---~--~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~ 214 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-----P---L--QQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKL 214 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-----C---c--cc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHH
Confidence 222121111111122222111110000 0 0 00 1377999999999999999999999998764 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----Cc-----cccccccc-CCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 277 KKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PG-----NLLTGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 277 ~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-----~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
+|++..+..+..++|+..-..+...-+.+. ++ +++..+.. ....+...+..++..+.+.+||-=....+
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl 294 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGL 294 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777776655432 11 12222211 13357777888999999999998888888
Q ss_pred HHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhHhhhh
Q 011638 346 FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFP 424 (480)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~Ga~~~~~l~~ilP 424 (480)
+|.+.+.++++ ++ ...|........++++++|...|+ |...+++.|. ..+.+.+++|
T Consensus 295 ~d~l~d~~~~~--~~-------------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP 352 (403)
T PRK15132 295 FDYLADLFQRR--NT-------------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLP 352 (403)
T ss_pred HHHHHHHHccC--cc-------------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99998876432 10 022445567778899999999998 8889999886 4789999999
Q ss_pred HHHHHHHhCCC
Q 011638 425 VEMYIAQKKIP 435 (480)
Q Consensus 425 ~~~~l~~~~~~ 435 (480)
+++.+|.|+++
T Consensus 353 ~~m~~~~r~~~ 363 (403)
T PRK15132 353 SLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHhhcC
Confidence 99999987654
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=3.3e-23 Score=208.64 Aligned_cols=345 Identities=14% Similarity=0.082 Sum_probs=249.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeeh
Q 011638 42 SAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 121 (480)
Q Consensus 42 ~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~ 121 (480)
+..++++++|+|++++|..+++.|+.++.+.+++.++++.++..++.|...+.++ . .++.+++++.+||++++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~---~--~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG---G--ASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CCHHHHHHHHhCHHHHHHH
Confidence 4567899999999999999999999999999999999999999999998765432 1 3899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 011638 122 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 201 (480)
Q Consensus 122 ~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (480)
.+...+.++..+.+|.+..++.+..+++..... ..++....+++.++..++ ..+..|..++++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999888642100 112223333344344443 44566777777777666655
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccchhhhHHHH
Q 011638 202 TYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASL 281 (480)
Q Consensus 202 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~ 281 (480)
...++.+...+.+...++. .+. + .......+...+++...++|.+|.+++++.+|+++++ ||.+|++.
T Consensus 149 ~~l~~~ii~~~~~~~~~~~----~~~---~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii 216 (381)
T TIGR00837 149 IAFALVFSGLLPHVKGDLL----LDV---A--LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSIL 216 (381)
T ss_pred HHHHHHHHHHHhhccHHHH----hcC---c--cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHH
Confidence 4332222222222111100 000 0 0011223677899999999999999999999998663 89999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCc-------c---ccccccc-CCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHH
Q 011638 282 ISVGVTTLFYMLCGCFGYAAFGDLSPG-------N---LLTGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIE 350 (480)
Q Consensus 282 ~s~~i~~~~Y~~~g~~gy~~fG~~~~~-------~---il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 350 (480)
.+..+++++|+++........+.+.-. + ..+.... ....|...+..++..+.+.+++.-...+++|.+.
T Consensus 217 ~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 217 IGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887777666544211 1 1111110 1234566788888999999999999999998888
Q ss_pred HHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchH-HHHHHhhhhhhhhhHhhhhHHHHH
Q 011638 351 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFN-DVVGLLGALGFWPLTVYFPVEMYI 429 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~-~v~~l~Ga~~~~~l~~ilP~~~~l 429 (480)
+.+++.. + + .+|+....+..++..++|.+.|+.. ..++..| +....+.+++|+++++
T Consensus 297 ~~~~~~~-~-----~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~ 354 (381)
T TIGR00837 297 DLFKFDD-S-----K---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAW 354 (381)
T ss_pred HHhCCCc-c-----c---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7664321 0 0 1244456666688889999999855 8999999 8889999999999999
Q ss_pred HHhCC
Q 011638 430 AQKKI 434 (480)
Q Consensus 430 ~~~~~ 434 (480)
+.||+
T Consensus 355 ~~r~~ 359 (381)
T TIGR00837 355 KARKK 359 (381)
T ss_pred HHHhc
Confidence 98765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=4.4e-20 Score=182.67 Aligned_cols=370 Identities=11% Similarity=0.048 Sum_probs=249.3
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcce
Q 011638 39 WTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQV 118 (480)
Q Consensus 39 ~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~ 118 (480)
......+.++++|+|+|+||-.....|..++++++++++.+++++.+.+.|...+.++ + ..++.+++++.+||+++
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~---~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-P---SGNITETVEEHFGKTGG 97 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C---CCCHHHHHHHHcChhHH
Confidence 3445899999999999999999999999999999999999999999999997654322 1 24899999999999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHH
Q 011638 119 KICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAV 198 (480)
Q Consensus 119 ~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 198 (480)
.+..++..+..+..+.+|...+.+.+.+.+.+. .+. . ..++....+++.++........+ +.+-+++-.-+.
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~---~---~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~ 169 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQ-LGF---A---PLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCc---C---CccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 999999999999999999988888888765532 111 0 12233334444444443433332 333333322222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC-------Cc
Q 011638 199 MSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP-------PS 271 (480)
Q Consensus 199 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p-------~~ 271 (480)
..+...+......+.+...+.-.+.+.+.. +...........+.++|++++||..|+.+|++...+|+. .+
T Consensus 170 ~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~--~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~ 247 (443)
T PRK13629 170 PFIASLVLISLSLIPYWNSAVIDQVDLGSL--SLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDF 247 (443)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhcCccccc--cccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccch
Confidence 222111122222222221111111110000 000000111256789999999999999999998884322 21
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-------Ccccccc----cccC-CC-----chHHHHHHHHHHHHH
Q 011638 272 ESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-------PGNLLTG----FGFY-NP-----YWLLDIANAAIVIHL 334 (480)
Q Consensus 272 ~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-------~~~il~~----~~~~-~~-----~~~~~~~~~~~~i~~ 334 (480)
..||.+|++..+..+..++|+.+-+.+...-+.+. +.+++.. ++.. .. .+...+..++..+.+
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI 327 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAI 327 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHH
Confidence 13899999999999999999998888888776542 1121221 1110 01 345667778888899
Q ss_pred HHhhhhhhhchHHHHHHHhcc-c-CCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhh
Q 011638 335 VGAYQVFCQPLFAFIEKQAHQ-R-FPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLG 412 (480)
Q Consensus 335 ~~s~pl~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G 412 (480)
.+||--....++|.++.++.+ . .+++ + +.+.+..+.....++.+.++.++..-|++-.+++-+|
T Consensus 328 ~TSFlGv~LGl~E~l~gl~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~ 393 (443)
T PRK13629 328 FKSFFGHYLGTLEGLNGLILKFGYKGDK----T----------KVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMG 393 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc----c----------ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhh
Confidence 999988888999999998742 1 1111 0 0111244556677888899999999999999999888
Q ss_pred hhhhhhhHhhhhHHHHHHHhCCCC
Q 011638 413 ALGFWPLTVYFPVEMYIAQKKIPK 436 (480)
Q Consensus 413 a~~~~~l~~ilP~~~~l~~~~~~~ 436 (480)
+-..+.+.|++|....+|...-++
T Consensus 394 gPiia~il~l~P~y~i~kvp~l~~ 417 (443)
T PRK13629 394 APIIASLLCLLPMYAIRKAPSLAK 417 (443)
T ss_pred hHHHHHHHHHHHHHHHHccHHHHH
Confidence 888899999999999888754433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=3.8e-19 Score=177.56 Aligned_cols=367 Identities=11% Similarity=0.040 Sum_probs=253.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcc
Q 011638 38 LWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQ 117 (480)
Q Consensus 38 ~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~ 117 (480)
.....+.+.++++|+|+|.+|....+.||...++..++...+++++.+++.|.....+. + ..++.|++++.|||++
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p---~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-P---CEDITEVVEEHFGKNW 80 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C---CCCHHHHHHHHcCHHH
Confidence 45567899999999999999999999999999999999999999999999987443221 1 1389999999999999
Q ss_pred eeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 011638 118 VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAA 197 (480)
Q Consensus 118 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~ 197 (480)
+.+..+...+..+..+.+|....++.+.+.+.... +. +.+.++...+..++++-.......+.+.+++-+-.
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~~-------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-GT-------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999999999999999999988886421 10 00112122222222323334456666666655555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhh----hhcCCCCccc
Q 011638 198 VMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ----DTVKSPPSES 273 (480)
Q Consensus 198 ~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~em~~p~~~~ 273 (480)
...+...++.....+.+...+.-.+ .+ .......+...+++.+++||.+|+.+|+.. +|.++|.+.+
T Consensus 153 ~~~ii~l~~l~~~lip~~~~~~L~~--~p-------~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~ 223 (397)
T TIGR00814 153 FPLVLILVLLSLYLIPHWNGANLTT--FP-------SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAE 223 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhc--CC-------cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHH
Confidence 4333322222222222221111100 00 001123478899999999999999999998 3444343234
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-----cc--cccccc-cCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP-----GN--LLTGFG-FYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~-----~~--il~~~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
||.+|++..+..+.+++|+..-..+....+.+.- +| .+..+. ..+..+...+..++-.+.+.+||--....+
T Consensus 224 ~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~ 303 (397)
T TIGR00814 224 RKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGA 303 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999988888888776531 12 111111 112345566777888889999999888999
Q ss_pred HHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhH
Q 011638 346 FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPV 425 (480)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~ 425 (480)
+|.+.+.+.+....+ ++ +.+.+........++.+.++.++..-|++-.+++-+|+-..+.+.|++|.
T Consensus 304 ~e~l~~l~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~ 370 (397)
T TIGR00814 304 REGLNGIVLNSLKMK---GK----------KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPM 370 (397)
T ss_pred HHHHHHHHHHHhccc---cc----------ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999873221110 00 01112345566677778899999999999999998888888999999999
Q ss_pred HHHHHHhCCCCcc
Q 011638 426 EMYIAQKKIPKWS 438 (480)
Q Consensus 426 ~~~l~~~~~~~~~ 438 (480)
..-+|...-++.+
T Consensus 371 ~~~~~v~~l~~~~ 383 (397)
T TIGR00814 371 YAIYKVPALKKYR 383 (397)
T ss_pred HHHHccHHHHHhC
Confidence 9988875443333
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.72 E-value=3.1e-14 Score=146.12 Aligned_cols=243 Identities=10% Similarity=-0.014 Sum_probs=154.2
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++..++.+++.........|...+.+ +.| .....+++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P-~~G----G~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSR-KSG----GMGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCC----chHHHHHH
Confidence 56788999999999999999999999999988886 4778888888888888888888665433 334 33455668
Q ss_pred hccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHH-HHHHHhhCCCCcchhh
Q 011638 112 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFG-IVEIVLSQIPDFDQLW 190 (480)
Q Consensus 112 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~pl~~~~~l~~l~ 190 (480)
.+||..+++..+..++.......++.....+++..+++. + . . ....+++... +++.-....+..|...
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~-----~--~-~~~~~~~~~~~l~~~~~ln~~g~~~~~ 146 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---T-----L--S-PVQICLATIGVLWLCTVANFGGARITG 146 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-----c--c-hHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 899999999999887766665555544445555544431 0 0 0 0011222111 1122222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCC
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 270 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 270 (480)
.+..+.....+...+++........ +.... .++ +. ........++..++....|+|.|......+.+|+|||+
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~~-~~~~~---~~~--~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 219 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFWF-SPSLY---VAA--WN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE 219 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-Ccccc---cCC--cC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc
Confidence 4444433333222222222222221 11110 011 11 01111123566778899999999999999999999997
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 271 SESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 271 ~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
|++||++..+..++.++|++........
T Consensus 220 ---r~iPrAi~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 220 ---RNVPIAVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999876655443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.70 E-value=5.4e-14 Score=144.84 Aligned_cols=378 Identities=14% Similarity=0.075 Sum_probs=207.7
Q ss_pred CCCCCCccCCCCcccccchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011638 19 PESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPV 97 (480)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~ 97 (480)
++.|++..+++.+.+|+.+.++.....+++++|+|++..|.... +.|. ..++..++.+++....+..+.|...+.+.
T Consensus 6 ~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~- 83 (458)
T PRK10249 6 TVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV- 83 (458)
T ss_pred ccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 33333333333467788899999999999999999998776555 5565 47788888999999999999997765442
Q ss_pred CCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHH
Q 011638 98 TGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIV 176 (480)
Q Consensus 98 ~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~ 176 (480)
.| +..+.+++.+|+..++++.+..++.......+.....+..+..+.+. . ..|.. +...+
T Consensus 84 ~G----g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~--~~~~~~~~~~~ 144 (458)
T PRK10249 84 SG----SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------V--PTWIWAAAFFI 144 (458)
T ss_pred CC----CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------C--cHHHHHHHHHH
Confidence 33 56667889999999999999988777666666655555555433321 1 12222 12222
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcccccccCcc-cchhhHHHHHHHHHHHHHHhc
Q 011638 177 EIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGK-FRGSLTGISIGTV-SETQKIWRSFQALGDIAFAYS 254 (480)
Q Consensus 177 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~ 254 (480)
++-+...+..|..+.+.....+..+...++.+...+.......+ .+...+.. +.+. ..+..+.++..++....|+|.
T Consensus 145 l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~ 223 (458)
T PRK10249 145 IINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-WRYGGFFATGWNGLILSLAVIMFSFG 223 (458)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 22233344555444443333322221111111111211111111 00001100 1000 001223366789999999999
Q ss_pred ccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----cccccccccCCCchHHHHHHHHH
Q 011638 255 YSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP----GNLLTGFGFYNPYWLLDIANAAI 330 (480)
Q Consensus 255 ~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~ 330 (480)
|...+....+|+|||+ |++||++..+.....++|...........+++.. +....-+.....++...+..++.
T Consensus 224 G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 300 (458)
T PRK10249 224 GLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVI 300 (458)
T ss_pred CHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHH
Confidence 9999999999999997 8999999999999999998755544433333211 11110000011134444555555
Q ss_pred HHHHHHhhhhhhhchHHHHHHHhcc-cCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc--hHHH
Q 011638 331 VIHLVGAYQVFCQPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDV 407 (480)
Q Consensus 331 ~i~~~~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~v 407 (480)
++..+.+..-.+...-+.+...-.+ ..| + ...+.++.+.| ..-.+....+..+..++....|+ ++.+
T Consensus 301 ~~a~~~~~~~~~~~~sR~l~a~ardg~lP-~-~~~kv~~~~~P--------~~All~~~~i~~l~~l~~~~~~~~~f~~l 370 (458)
T PRK10249 301 LVASLSVYNSGVYSNSRMLFGLSVQGNAP-K-FLTRVSRRGVP--------INSLMLSGAITSLVVLINYLLPQKAFGLL 370 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcC-H-HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 5555555544333333344333221 111 1 11111111122 22233333333333333333332 4455
Q ss_pred HHHhhhhhhhhhHhhhhHHHHHHHhC
Q 011638 408 VGLLGALGFWPLTVYFPVEMYIAQKK 433 (480)
Q Consensus 408 ~~l~Ga~~~~~l~~ilP~~~~l~~~~ 433 (480)
.++.+. ...+.|++|++.+++.++
T Consensus 371 ~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 371 MALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 554432 357899999999988663
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.70 E-value=7.4e-14 Score=143.03 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=154.2
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++..........|...+.+ +.| ...+.++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P-~~G----G~y~y~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNP-QQG----GPIAYAG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC----ChhHHHH
Confidence 5778899999999999999999999999999988764 667777777777777888888665543 233 3333445
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l 189 (480)
+ +||..++.+.+..+........++.+...+++..+++.. . . .. ..+.+ +..+.++-+...+..|..
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~--~--~~--~~~~~~~~i~~~~~~ln~~gvk~~ 143 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----N--D--PI--PAGIACIAIVWVFTFVNMLGGTWV 143 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----C--C--hH--HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6 799999999888776555555566555666665554321 0 0 00 11111 111112222333444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 269 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 269 (480)
+.+..+..+..+. .+++..+......++... .+ ++. ...+.+..++..++....|+|.|...+....+|+|||
T Consensus 144 ~~i~~i~~~~~li---~~~~~~i~g~~~~~~~~~-~~--~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP 216 (435)
T PRK10435 144 SRLTTIGLVLVLI---PVVGTAIVGWHWFDAATY-AA--NWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP 216 (435)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHcCHHhh-cc--ccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence 4444433333222 111111111111111000 00 111 0112234578889999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 270 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 270 ~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
+ |+++|++..+..++.++|++..........
T Consensus 217 ~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 217 K---RTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7 899999999999999999988776654443
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.70 E-value=8.7e-14 Score=144.54 Aligned_cols=369 Identities=14% Similarity=0.119 Sum_probs=201.3
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
+.+|+.+.++..+..++++||+|++..|. +.+..|- .+++..++++++....+..+.|.....+ ..| +..+.+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P-~aG----g~y~y~ 98 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRP-SSG----SFVSYA 98 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CHHHHH
Confidence 47788899999999999999999988877 6666776 5678888889999999999999776543 333 566677
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHH-HHHHHHHhhCCCCcch
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIA-FGIVEIVLSQIPDFDQ 188 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~~~~~pl~~~~~l~~ 188 (480)
++.+||+.++++.+..++.............+..+... +. ++ . ...|... ..++++-+...+..|.
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~~--------~--~~~~~~~~~~~~l~~~iN~~gvk~ 165 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--FG--------G--VPQWVFALAALTIVGTMNMIGVKW 165 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CC--------C--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999887765444433333333332211 10 00 0 1223221 1222222223333444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc-c-Cccc-chhhHHHHHHHHHHHHHHhcccchhHhhhhh
Q 011638 189 LWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS-I-GTVS-ETQKIWRSFQALGDIAFAYSYSIILIEIQDT 265 (480)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~e 265 (480)
...+.....+..+...+..+...+.......+.+....+.. + ++.. .+......+.++...+|+|.|-..+....+|
T Consensus 166 ~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE 245 (499)
T PRK15049 166 FAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGE 245 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44443333322222111111121221111111111100100 0 0000 0122335566677899999999999999999
Q ss_pred cCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----cccccccccCCCchHHHHHHHHHHHHHHHhhhhh
Q 011638 266 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP----GNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVF 341 (480)
Q Consensus 266 m~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 341 (480)
+|||+ |++||++..++....++|+..........+.+.. +....-+......+...+.++..++..+.+..-.
T Consensus 246 ~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~ 322 (499)
T PRK15049 246 CKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSG 322 (499)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99997 8999999999999999998876655544443211 1111101001123344556666666666666544
Q ss_pred hhchHHHHHHHhccc-CCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhhhhh
Q 011638 342 CQPLFAFIEKQAHQR-FPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALGFWP 418 (480)
Q Consensus 342 ~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~v~~l~Ga~~~~~ 418 (480)
+....+.+..+-.+. .| + +..+-++.+.| ..-++...++.++..++....|+ ++.++++.+ .+..
T Consensus 323 ~~~~sR~l~a~Ardg~lP-~-~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~l 390 (499)
T PRK15049 323 LYCTGRILRSMAMGGSAP-S-FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGII 390 (499)
T ss_pred HHHHHHHHHHHHhcCCcC-H-HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHH
Confidence 444444444433221 12 1 11111111222 22223333333333223333332 555666654 3457
Q ss_pred hHhhhhHHHHHHHhC
Q 011638 419 LTVYFPVEMYIAQKK 433 (480)
Q Consensus 419 l~~ilP~~~~l~~~~ 433 (480)
+.|++|.+.+++.|+
T Consensus 391 i~y~~~~~~~l~~R~ 405 (499)
T PRK15049 391 ASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999888764
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.67 E-value=2.7e-13 Score=139.36 Aligned_cols=245 Identities=14% Similarity=0.031 Sum_probs=151.8
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
++++|+.+.++.+...+++++|+|++.+|....+.|. ..+...++.++.....+..+.|.....+ +.|. ..+.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P-~aGG----~y~~~ 77 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDP-SPGG----SYAYA 77 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCC----hhHHH
Confidence 4577889999999999999999999999999888764 3556666667777777777788665543 3332 23337
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCc-hhHHHH--HHHHHhhCCCCc
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNP-YMIAFG--IVEIVLSQIPDF 186 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~--~~~~pl~~~~~l 186 (480)
++.+||...+++.+..++.......+......+....+++.. ...+ ..++.. ++++-....+..
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ln~~gv 144 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------------KDPLVLTITCVVVLWIFVLLNIVGP 144 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------CCcHHHHHHHHHHHHHHHHHHHhch
Confidence 788999999999988887665555555544445544433310 0111 111111 112222233444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhc
Q 011638 187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 266 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 266 (480)
|....+..+.....+...++.+...+... +..... ++ +. .........+..++....|+|.|........+|+
T Consensus 145 k~~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~--~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~ 217 (445)
T PRK10644 145 KMITRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AA--WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV 217 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cchhcc---CC--cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 55555544444333221111111111111 111000 00 10 0111123355677889999999999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 267 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 267 ~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
|||+ |+.+|++..+..++.++|.+..+.....-+
T Consensus 218 k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 218 KNPK---RNVPIATIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred hCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997 899999999999999999988877544433
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.66 E-value=5.3e-13 Score=138.21 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=159.0
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGW-IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~-~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
++|+.+.++++...+++++|+|++.+|....+.|- ...++..++.+++.........|...+.+.+.| ...+..+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYAR 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHH
Confidence 46778999999999999999999999999876553 334566777788788888888887765543233 2344557
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l 189 (480)
+.+||..+++..+..++.......++.....+.+..+++... .+. . ...+.+ +..+++.-....+..|..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~--~--~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGN--P--VPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCC--c--HHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 889999999999988877666666666666666665554210 000 0 011111 111222233345666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 269 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 269 (480)
+.+..+.....+...++.+...+... +......+..+. .. .........+..++....|+|.|......+.+|+||
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~-~~-p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~- 227 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGH-DV-PSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN- 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCcc-CC-CcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence 66666555443332222222222221 111100000000 00 000112335668889999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 270 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 270 ~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
+ |+.+|++..+..++.++|++.........+
T Consensus 228 ~---r~iPrai~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 228 K---SDVGKATVLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred c---ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5 899999999999999999988766544333
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.66 E-value=3.7e-13 Score=138.70 Aligned_cols=249 Identities=14% Similarity=0.089 Sum_probs=160.3
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLA-WATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.+.+|+.+.++.....+++++|+|++..| .+.++.|. .+++..++.+++....+..+.|...+.+. .| +..+.
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~G----g~~~~ 81 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD-TG----SFSTY 81 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHH
Confidence 34788889999999999999999999999 66677786 47788888899999989999887765432 23 55677
Q ss_pred HHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHH-HHHHHHhhCCCCcc
Q 011638 109 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAF-GIVEIVLSQIPDFD 187 (480)
Q Consensus 109 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~ 187 (480)
+++.+||...+++.+..++.....+.+.....++.+..+.+. . ..|.+.. .+++.-+...+..|
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv~ 146 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSVK 146 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999988887777777777777666544331 1 1232221 11222222334445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc-ccCccc--chhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 188 QLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTVS--ETQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
..+.+.....+..+...++.+...+.......+.. +..+. ++.+.. .+....++..++....|+|.|........+
T Consensus 147 ~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~ 225 (452)
T TIGR01773 147 SYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGS-EVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAA 225 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHH
Confidence 45544443333322211111111111111111110 00000 000000 012234678899999999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
|+|||+ |+.||++..+.....++|++.........+
T Consensus 226 E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 226 ESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred hhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 999997 899999998888888999886554444333
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.65 E-value=4.9e-13 Score=138.43 Aligned_cols=298 Identities=14% Similarity=0.043 Sum_probs=170.1
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
+.+|+.+.++.+...+++++|+|++..|... +..|-...++..++.+++.......+.|...+.+ +.| .+.+.+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P-~aG----G~y~y~ 85 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMP-ETG----AFHVYA 85 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC----CHHHHH
Confidence 4678899999999999999999998877665 5667544577788888888888888888776544 233 455677
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchh
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (480)
++.+|+..++++.+..++.....+.......+..+..+.+ ......+.++..+ ++-+...+..|..
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~~-~~~~in~~gvk~~ 151 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFCA-LIFGLNVVSTRFF 151 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 7889999999999988877665554444444433322221 0011112222222 2223333444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CC-c---ccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKF-RG-S---LTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
+.......+..+...++.+...+.......+. ++ . .+..+...+. +....++..++....|+|.|-..+....+
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCC-cccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 44333222222221111111111111110000 00 0 0000000010 11234677888889999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc----ccccccccCCCchHHHHHHHHHHHHHHHhhhh
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG----NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQV 340 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 340 (480)
|+|||+ |+++|++..+..++.++|+..........+.+..+ ...+-+......+...+..++.++..+.+..-
T Consensus 231 E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~ 307 (471)
T PRK11387 231 ETENPA---KVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANS 307 (471)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 999997 89999999999999999998776554444422111 11100000112344455566666666655544
Q ss_pred hhhchHHHHHH
Q 011638 341 FCQPLFAFIEK 351 (480)
Q Consensus 341 ~~~p~~~~~~~ 351 (480)
.+...-+.+..
T Consensus 308 ~~~~~sR~l~a 318 (471)
T PRK11387 308 GLYASGRMLWS 318 (471)
T ss_pred HHHHhhHHHHH
Confidence 44333444444
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.65 E-value=7.7e-13 Score=136.80 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=152.0
Q ss_pred CCcccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 29 DGRLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 29 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
+.+.+|+.+.++.....++++||+|++..|. ++++.|. ..++..++++++.......+.|...... .. .++.+
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~-~~----~~~~~ 88 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL-EY----KSFSD 88 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CcHHH
Confidence 3458888999999999999999999998755 6777777 4667777888888777777777654211 11 25667
Q ss_pred HHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcc
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (480)
.+++.+||..++++.+..++.......+.....+..+..+++. .. .+...+..++++-+...+..|
T Consensus 89 ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~-~~~~~~~~~~~~~~iN~~g~~ 154 (469)
T PRK11049 89 FASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LS-DWVASLAVVLLLLSLNLATVK 154 (469)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------Cc-HHHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999999998777555555555555555433321 11 111111122222223334445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccc-c-cCcc-cchhhHHHHHHHHHHHHHHhcccchhHhhh
Q 011638 188 QLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGK-FRGSLTGI-S-IGTV-SETQKIWRSFQALGDIAFAYSYSIILIEIQ 263 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (480)
..+.+..+.....+...++.+...+........ .++..... + +.+. ..+..+.++..++....|+|.|...+....
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a 234 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTA 234 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 555554443333322222222222221111100 00000000 0 1000 001223467889999999999999999999
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 300 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~ 300 (480)
+|+|||+ |++||++..+...+.++|.+.....+.
T Consensus 235 ~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 235 AETKDPE---KSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred HHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 9999997 899999987777778888866655543
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.65 E-value=8.2e-13 Score=136.64 Aligned_cols=372 Identities=11% Similarity=0.058 Sum_probs=204.4
Q ss_pred ccchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 34 RTGTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 34 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
|+.+.++.+...++++||+|++.+|.... ..|....++..++.++.....+..+.|...+.+...| ...+.+++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG----G~y~y~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG----GVYSYAKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHhH
Confidence 46789999999999999999999988765 4454445566788888888888888887665443221 233447788
Q ss_pred ccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchhhH
Q 011638 113 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQLWW 191 (480)
Q Consensus 113 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~ 191 (480)
+||..+++..+..++.......++.......+..+++... . ..+...+.+ +..+..+-....+..|..+.
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-------~--~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-------G--GNNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------C--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999998887766666776666555554443210 0 000011111 11222222333456665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCc
Q 011638 192 LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS 271 (480)
Q Consensus 192 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~ 271 (480)
+..+..+..+...++.+...+.....+ ....+..+..-+.........++..++....|+|.|......+.+|.||+
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~-- 224 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFAFKGD-TFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR-- 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHh-hcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--
Confidence 555544433322111221112211111 10000000000000001122345578889999999999999999999984
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----Ccc-cccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchH
Q 011638 272 ESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS----PGN-LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLF 346 (480)
Q Consensus 272 ~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~----~~~-il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 346 (480)
|+++|++..+...+.++|.+..+..+...+++. ++. ...-+.....+|...+..+..+++...+..-.+...-
T Consensus 225 --k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~s 302 (468)
T TIGR03810 225 --SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPA 302 (468)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998877665544321 111 1000000112455566777777777777655554444
Q ss_pred HHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHh-ccchHHHHHHhhhhhhhhhHhhhhH
Q 011638 347 AFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISML-LPFFNDVVGLLGALGFWPLTVYFPV 425 (480)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~p~~~~v~~l~Ga~~~~~l~~ilP~ 425 (480)
+.....-++..-++. ..|.++.+.| ..-......+..+..++... -+.++.+.++.+. ...+.|++++
T Consensus 303 R~~~a~ardg~lP~~-f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~ 371 (468)
T TIGR03810 303 EIPLLMAKDKLMPKY-FGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSA 371 (468)
T ss_pred HHHHHHHhCCCccHH-HHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 444443322111111 1111111222 22222222222222111111 1335666665543 3568889999
Q ss_pred HHHHHHhCC
Q 011638 426 EMYIAQKKI 434 (480)
Q Consensus 426 ~~~l~~~~~ 434 (480)
+.+++.+++
T Consensus 372 ~~~~~l~~~ 380 (468)
T TIGR03810 372 AYQVKLSWR 380 (468)
T ss_pred HHHHHHHHh
Confidence 988887543
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.64 E-value=5.5e-13 Score=137.34 Aligned_cols=369 Identities=11% Similarity=0.059 Sum_probs=203.4
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
++.+|+.+.++..+..++++||+|++..|.... +.|- ..++..++++++....+..+.|...+.+. .| ++.+.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~~ 81 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSHF 81 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHH
Confidence 357889999999999999999999988877665 4554 56777888888888888888887665442 33 56666
Q ss_pred HHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcch
Q 011638 109 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 188 (480)
Q Consensus 109 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (480)
+++.+||...+++.+..++.....+.+.....++.+....+. .+...+..+.. ++.-.......|.
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~-~~~~~lN~~gv~~ 147 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFF-VVINAINLTNVKV 147 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHH-HHHHHHHHHhHHH
Confidence 778899999999999999888888888877777776544321 11111222222 2222222334444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-ccccc-ccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhc
Q 011638 189 LWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG-SLTGI-SIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 266 (480)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 266 (480)
.+.+.....+..+...++.+...+.......+.+. ..... +-+... +....++..+++...|+|.|-.......+|+
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~ 226 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEA 226 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 44444443333332221122111111111111110 01100 000011 1223356677888999999999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh--hcCCCC--CcccccccccCCCchHHHHHHHHHHHHHHHhhhhhh
Q 011638 267 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA--AFGDLS--PGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFC 342 (480)
Q Consensus 267 ~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~--~fG~~~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 342 (480)
|||+ |++||++..+.....++|...-..... -+.+-. .+....-+......+...+.+..+++..+.+..-.+
T Consensus 227 knP~---r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~ 303 (456)
T PRK10238 227 DNPE---QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCV 303 (456)
T ss_pred cChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 899999998888888888764333221 111110 011100000011133444555556666565555444
Q ss_pred hchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhhhhhhH
Q 011638 343 QPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALGFWPLT 420 (480)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~v~~l~Ga~~~~~l~ 420 (480)
....+.+...-.++.-++ +..+-++.+.| ..-.+....+..+..++....|+ ++.++++.+ .+..+.
T Consensus 304 ~~~sR~l~a~ardg~lP~-~f~kv~~~~~P--------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~ 372 (456)
T PRK10238 304 YCNSRMLFGLAQQGNAPK-ALASVDKRGVP--------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVIN 372 (456)
T ss_pred HHHHHHHHHHHhCCCccH-HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHH
Confidence 444445444332211111 11111111122 22223333333333232223332 555666543 345689
Q ss_pred hhhhHHHHHHHhC
Q 011638 421 VYFPVEMYIAQKK 433 (480)
Q Consensus 421 ~ilP~~~~l~~~~ 433 (480)
|.+|.+.+++.+|
T Consensus 373 y~~~~~~~l~~r~ 385 (456)
T PRK10238 373 WAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.64 E-value=1.1e-12 Score=135.14 Aligned_cols=374 Identities=11% Similarity=0.046 Sum_probs=208.7
Q ss_pred CCCCcccccchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 27 DDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWA-TAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
+++.+.+|+.+.++..+..++++||+|++..|.. .+.+|. ..++..++++++.+..+..+.|.....+ +.| ++
T Consensus 3 ~~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P-~sG----g~ 76 (461)
T PRK10746 3 DNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEP-VTG----SF 76 (461)
T ss_pred CCchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC----CH
Confidence 3445678889999999999999999999886654 456676 4667788888888888888888765533 333 67
Q ss_pred HHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCC
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 185 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (480)
.+.+++.+||..++++.+..++.....+.+.....+..+..+++. .+...+..+.. +++-+...+.
T Consensus 77 ~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~-~~~~~lN~~g 142 (461)
T PRK10746 77 AVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAV-ALVALANLAA 142 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHH-HHHHHHHHHh
Confidence 778899999999999999998887777777766666666544321 11112222222 2222223333
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH--HHHHH-HhhhcCCCCCcccccccCcc--cchhhHHHHHHHHHHHHHHhcccchhH
Q 011638 186 FDQLWWLSIVAAVMSFTYSTIGL--GLGIA-KVAETGKFRGSLTGISIGTV--SETQKIWRSFQALGDIAFAYSYSIILI 260 (480)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~~--~~~i~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~ 260 (480)
.|..+.+........+...++.+ ++.+. ............++ +.+. ..+..+.++..++....|+|.|...+.
T Consensus 143 v~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~ 220 (461)
T PRK10746 143 VRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSN--LTEHGGFFAGGWKGFLTALCIVVASYQGVELIG 220 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccc--ccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHH
Confidence 34443333222221111111111 11111 11111000000010 1100 001223466789999999999999999
Q ss_pred hhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc----cccccccCCCchHHHHHHHHHHHHHHH
Q 011638 261 EIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN----LLTGFGFYNPYWLLDIANAAIVIHLVG 336 (480)
Q Consensus 261 ~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~----il~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (480)
...+|+|||+ |++||++..+.....++|+............+..+. ....+..........+.++++++..+.
T Consensus 221 ~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s 297 (461)
T PRK10746 221 ITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALS 297 (461)
T ss_pred HHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 9999999997 899999999999889999886555444443332111 100000001122334556666666666
Q ss_pred hhhhhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhh-
Q 011638 337 AYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALG- 415 (480)
Q Consensus 337 s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~- 415 (480)
+..-.+....+.+...-+++.-++. ..+-++.+.| ..-.+......++...+....|+-+.+++.+-+++
T Consensus 298 ~~n~~~~~~sR~l~~~a~~g~lP~~-~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~ 368 (461)
T PRK10746 298 GCNSGMYSCGRMLYALAKNRQLPAA-MAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASV 368 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHH-HHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 6655555455555554332211111 1111111222 22222232222333344445565555555444332
Q ss_pred -hhhhHhhhhHHHHHHHhCC
Q 011638 416 -FWPLTVYFPVEMYIAQKKI 434 (480)
Q Consensus 416 -~~~l~~ilP~~~~l~~~~~ 434 (480)
...+.|+++++.+++.+++
T Consensus 369 ~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 369 LPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 2478888888888887654
No 28
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.63 E-value=3.3e-13 Score=140.87 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=150.7
Q ss_pred CCCcccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 28 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWI-AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 28 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G~~-~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
++.+.+|+.+.++.+...+++++|+|++..|... .+.|-. ..++..++.+++....+....|.....+ +.| ..
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P-~sG----G~ 110 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIP-KSG----GE 110 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----ch
Confidence 5556788899999999999999999999988764 455643 2234556777777888888888766544 233 33
Q ss_pred HHHHHHhccCcceeehhHHHHHH-HHHHHHHHHHHhhhhhhH-hhhhhcccCCCCCCCCccCCCchhH--HHHHHHHHhh
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLN-LFGVAIGYTIASSISMMA-IERSNCFHSKGDKNPCHMNSNPYMI--AFGIVEIVLS 181 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~-~~g~~i~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~~~~pl~ 181 (480)
....++.+||...++..+..++. ..+.+..+....++.+.. +.+.. ..+.....+ +..+++.-+.
T Consensus 111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-----------~~~~~~~~~i~~~~i~~~~~l 179 (501)
T TIGR00911 111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-----------EVPEWAIRLVAVLCVLLLTLV 179 (501)
T ss_pred hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CCchHHHHHHHHHHHHHHHHH
Confidence 44455679999888887765432 223344444445554321 22210 111111111 1122222233
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHh
Q 011638 182 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIE 261 (480)
Q Consensus 182 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 261 (480)
..+..|...++..+..+..+...++.+...+.........+.+... .+. ....+..++..++...+|+|.|...+..
T Consensus 180 n~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~--~~~~~~~~~~~a~~~~~~af~G~e~~~~ 256 (501)
T TIGR00911 180 NCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE--GTETSAGGIVLAFYSGIWAYGGWNYLNF 256 (501)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC--CCCCcHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3455555555555554444332222222222222111111110000 010 0112344677889999999999999999
Q ss_pred hhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 262 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 262 i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
+.+|+|||+ |+.||++..+..++.++|++....-....+
T Consensus 257 ~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 257 VTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999997 899999999999999999998655544433
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=99.62 E-value=7.9e-13 Score=135.46 Aligned_cols=299 Identities=13% Similarity=0.006 Sum_probs=186.1
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 33 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
+|+.+.++.+...+++++|+|++.+|......+-...++..++.+++....+..+.|..++.+. .| +..+..++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~~~ 76 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AG----SPYTYAYEA 76 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC----cceeeHHHH
Confidence 5788999999999999999999999977654432335566777788888888888887765443 23 233455677
Q ss_pred ccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCcc---CCCc--hhHHHHHHHHHhhCCCCcc
Q 011638 113 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHM---NSNP--YMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 113 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~--~~ii~~~~~~pl~~~~~l~ 187 (480)
+||+.+++..+..++.....+..+....++.+..+++....+ . ...+.. .... +..+..++++-+...+..|
T Consensus 77 ~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~ 153 (429)
T TIGR00909 77 MGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD-L--PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAK 153 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-C--chhhhcCCcccccccHHHHHHHHHHHHHHHhCcH
Confidence 999999999999988888888888888888887777531100 0 000000 0111 1222233333334456677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcC
Q 011638 188 QLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVK 267 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~ 267 (480)
..++++.+.....+...++.+.....+...+ + +.+.. +.+..+...++...+|+|.|........+|+|
T Consensus 154 ~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~-----~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~ 222 (429)
T TIGR00909 154 ESGKVNDILVVLKVAALLLFAALGAIHFASN-----N-----YTPFM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVK 222 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCcHH-----h-----cCCCC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhcc
Confidence 7777777666655543322222222221111 1 11011 12334667889999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--Cc-ccc-cccccCCCchHHHHHHHHHHHHHHHhhhhhhh
Q 011638 268 SPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS--PG-NLL-TGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQ 343 (480)
Q Consensus 268 ~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~--~~-~il-~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 343 (480)
||+ |+.+|++..+..++.++|++.........+.+. ++ ..+ .-......++...+..+..++....+..-.+.
T Consensus 223 ~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (429)
T TIGR00909 223 NPE---RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIY 299 (429)
T ss_pred Ccc---ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 889999999999999999988766554332211 11 000 00000122445556667777777777655555
Q ss_pred chHHHHHHHh
Q 011638 344 PLFAFIEKQA 353 (480)
Q Consensus 344 p~~~~~~~~~ 353 (480)
..-+.+....
T Consensus 300 ~~sR~~~~~a 309 (429)
T TIGR00909 300 GTSRVLFAMS 309 (429)
T ss_pred HHHHHHHHHH
Confidence 4444554443
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.61 E-value=1.8e-12 Score=142.51 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=160.6
Q ss_pred ccccchHHHHHHHH-HhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 32 LKRTGTLWTASAHI-ITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 32 ~~~~~s~~~~~~~l-~~~~iG~GiL~-lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
..++.++++.++.- +.+++|.|++. +++...++|...++++++++++++..++.-+.+...+..++.|. .| .+.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y-~yi 149 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AY-YLI 149 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HH-HHH
Confidence 45677888888888 99999999954 78888899988889999999999999999999877653334443 33 345
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchh
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (480)
++++|+..+..+.++.++.....+..|.+.+++++..+++....... ..+ ......+.++..+++. +..... .
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~--~~~-~~~~~iia~i~l~ll~-~In~~G---v 222 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIM--VDP-INDIRIYGTVTVVVLL-GISFAG---M 222 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cCc-cccchHHHHHHHHHHH-HHHHhh---H
Confidence 67799999999999999988889999999999999888753211000 000 0011111222222222 222333 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCcccccc---cC-cc-cchhhHH-HHHHHHHHHHHHhcccchhHh
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAET--GKFRGSLTGIS---IG-TV-SETQKIW-RSFQALGDIAFAYSYSIILIE 261 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~--~~~~~~~~~~~---~~-~~-~~~~~~~-~~~~~~~~~~faf~~~~~i~~ 261 (480)
++.+.+..+.++...+.++...+...... .+..+ ..+.. +. +. +..++.. +++..++++++||.|......
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g-~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKG-FFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccc-eeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433321111111111111110 00000 00000 00 00 0011111 366788888899999999999
Q ss_pred hhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 011638 262 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 299 (480)
Q Consensus 262 i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy 299 (480)
+.+|+|||+ |++|+++..++.+++++|+++.++-.
T Consensus 302 ~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 302 ISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 89999999999999999999876433
No 31
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.61 E-value=4.5e-12 Score=130.78 Aligned_cols=245 Identities=15% Similarity=0.073 Sum_probs=151.7
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.+.+|+.+.++.+...+++++|+|++.+|... +..|. ..++..++.+++....+..+.|...+.+ ..| +..+.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P-~~G----g~y~y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNP-AAS----SFSRY 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC----CHHHH
Confidence 35778889999999999999999999987764 45565 4688888888898999999999776543 233 44556
Q ss_pred HHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcch
Q 011638 109 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 188 (480)
Q Consensus 109 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (480)
+++.+||..++++.+..++.....+.......+..+..++++ .....+.++.. ++.-....+..|.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~l~~~ln~~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVV-LIICAVNLMSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHH-HHHHHHHHccchh
Confidence 788899999999999888766555555555555554433321 11112222222 2222334445555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HH-HhhhcCCCCCcccccccCcccc-hhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 189 LWWLSIVAAVMSFTYSTIGLGLG--IA-KVAETGKFRGSLTGISIGTVSE-TQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~~~~~--i~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
...+.....+..+...++.+... +. ....+...+....+ .+.+... +....+...++....|+|.|........+
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~ 223 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAG 223 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55544433332222111111111 11 11111000000000 0110000 12233677889999999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 298 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~g 298 (480)
|+|||+ |+.||++..+.....++|.......
T Consensus 224 E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 224 EAKDPE---KSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 8899999988888888888765444
No 32
>PRK11021 putative transporter; Provisional
Probab=99.61 E-value=4.7e-12 Score=128.85 Aligned_cols=355 Identities=14% Similarity=0.083 Sum_probs=192.4
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCc
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 116 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~ 116 (480)
++++++...+++++|+|++.+|....+.+-...++..++.+++.......+.|...+.+. .| .....+++.+||+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aG----G~y~y~~~~~G~~ 76 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AG----GPAHFVGMAFGPR 76 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHhHHHHhCch
Confidence 578999999999999999999887765432357888888888888888999997776543 33 3455667789999
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHH
Q 011638 117 QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVA 196 (480)
Q Consensus 117 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 196 (480)
..+...+..+........+......+.+..+++. + .+. .+...+...+++-+...+..|..+++..+.
T Consensus 77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW--------S---SWQ-LLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--------C---Cch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998877654444444433444444433321 0 110 111112222222233445555555544443
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccchhh
Q 011638 197 AVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTM 276 (480)
Q Consensus 197 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~ 276 (480)
.+..+. ++...+.. .+ ....+. .+.+. ...+..++..++....|+|.|...+....+|+|||+ |++
T Consensus 145 ~~~~~~----i~~~~~~~--~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~i 210 (410)
T PRK11021 145 ALLIVA----LVVAIWWA--GD-IKPADI---PFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDF 210 (410)
T ss_pred HHHHHH----HHHHHHHH--cC-CchhcC---CCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccc
Confidence 322211 11111111 11 001110 11101 112344677889999999999999999999999997 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--hhhcCCCCCc--ccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHHHH
Q 011638 277 KKASLISVGVTTLFYMLCGCFG--YAAFGDLSPG--NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQ 352 (480)
Q Consensus 277 ~~~~~~s~~i~~~~Y~~~g~~g--y~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 352 (480)
||++..+..++.++|++....- ...+++...+ ....-+...-..+...+..+..++....+....+....+.+...
T Consensus 211 PrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ 290 (410)
T PRK11021 211 PRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQ 290 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999977553 2223332111 10000000001122223344444555555444333333344433
Q ss_pred hcc-cCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHH-hccchHHHHHHhhhhhhhhhHhhhhHHHHHH
Q 011638 353 AHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISM-LLPFFNDVVGLLGALGFWPLTVYFPVEMYIA 430 (480)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~-~~p~~~~v~~l~Ga~~~~~l~~ilP~~~~l~ 430 (480)
-++ ..| + +..|.++.+.| ..-.+....+..+..++.. ...+++.+.++.. ....+.|.++.+-.++
T Consensus 291 ardg~lP-~-~~~k~~~~~tP--------~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~ 358 (410)
T PRK11021 291 AREGRPP-S-YLARLSARGVP--------VNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACK 358 (410)
T ss_pred HccCCcc-H-HHHhhccCCCc--------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222 122 1 11111111222 2222223222222222222 2357888777654 3346788888777777
Q ss_pred HhCC
Q 011638 431 QKKI 434 (480)
Q Consensus 431 ~~~~ 434 (480)
++++
T Consensus 359 l~~~ 362 (410)
T PRK11021 359 LLKG 362 (410)
T ss_pred Hhcc
Confidence 7654
No 33
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.60 E-value=1.9e-12 Score=136.01 Aligned_cols=376 Identities=13% Similarity=0.059 Sum_probs=212.1
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT--AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af--~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
.+.+|+.+.++.+...++.++|+|++.+|... ...|.. .++.+++.++.+...+....|...+.+ +.|. .+.|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P-~sGg-~Y~y~- 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVP-KAGS-AYLYS- 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCc-ceeeH-
Confidence 35788899999999999999999999998654 346754 566777888888888888888766544 3443 24555
Q ss_pred HHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhc----ccCCCCCCCCccCC-CchhHHHHHHHHHhhC
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNC----FHSKGDKNPCHMNS-NPYMIAFGIVEIVLSQ 182 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~----~~~~~~~~~~~~~~-~~~~ii~~~~~~pl~~ 182 (480)
++.+|+...+++.+..++.....+.+.....++++..++.... .+..+...+ .... ..+..+..++++-+..
T Consensus 100 --~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 100 --YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred --HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHH
Confidence 4558999999999998887776666666666666666654210 000000000 0001 1122222222222334
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011638 183 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEI 262 (480)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 262 (480)
.+..|..+++..+..+..+....+++.....+...++-......+ -++.. +.+..+++.++...+|+|.|...+...
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~--~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKG--AGGFM-PYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhcccccccc--CCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 466666666666555544432222222222222111100000000 00011 123347788999999999999999999
Q ss_pred hhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCcccccccccCCCchHHHHHHHHHHHHHHHhhh
Q 011638 263 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL---SPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQ 339 (480)
Q Consensus 263 ~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~p 339 (480)
.+|+|||+ |++||++..++.+++++|.++...-...-+.+ .++.+...+.....++...+..+..++.+..+..
T Consensus 254 aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~ 330 (557)
T TIGR00906 254 GEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLL 330 (557)
T ss_pred HHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999997 89999999999999999998776544332221 1111111111112245555666666666666665
Q ss_pred hhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhh
Q 011638 340 VFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPL 419 (480)
Q Consensus 340 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l 419 (480)
..+...-+.+..+-.++.-.+.+.+.+++.+.| .+- ..+..+++.+++... +++.+.++... +..+
T Consensus 331 ~~~~~~sRil~amarDGlLP~~fakv~~r~~tP---------~~A--il~~~iv~~il~~~~-~~~~l~~l~si--g~ll 396 (557)
T TIGR00906 331 GGMFPLPRVIYAMARDGLLFKWLAQINSKTKTP---------INA--TVVSGAIAALMAFLF-DLKALVDLLSI--GTLL 396 (557)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHhccCCCCCCc---------HHH--HHHHHHHHHHHHHHc-CHHHHHHHHHH--HHHH
Confidence 555555555555432211111111111111111 222 222223333344333 46666665532 3468
Q ss_pred HhhhhHHHHHHHh
Q 011638 420 TVYFPVEMYIAQK 432 (480)
Q Consensus 420 ~~ilP~~~~l~~~ 432 (480)
.|.++++..+.+|
T Consensus 397 ~y~lv~~~~l~lR 409 (557)
T TIGR00906 397 AYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877776665
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.59 E-value=5.5e-12 Score=131.04 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=155.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSGVLSLA-WATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
+|+.+.++.....++.++|+|++..| .+.+..|....++..++.+++....+..+.|.....+...| .|.+.+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence 46788999999999999999998765 55566675444667888888888888888887765542222 57788889
Q ss_pred hccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhH
Q 011638 112 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWW 191 (480)
Q Consensus 112 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~ 191 (480)
.+||..++++.+..++.....+.+.....+..+..+.+ ..+...|..+.. ++.-+...+..|..+.
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFY-VFIVIINLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHH-HHHHHHHHhcchHHHH
Confidence 99999999999999888777777777776666643321 111122222222 2222334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccC---cccch---hhHHHHHHHHHHHHHHhcccchhHhhhhh
Q 011638 192 LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIG---TVSET---QKIWRSFQALGDIAFAYSYSIILIEIQDT 265 (480)
Q Consensus 192 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~faf~~~~~i~~i~~e 265 (480)
+........+...+..+...+.....+.+.+.......+. ...+. ....++..++....|+|.|........+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 5544433222211111112222211111111100000000 01111 12456778899999999999999999999
Q ss_pred cCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011638 266 VKSPPSESKTMKKASLISVGVTTLFYMLCGCF 297 (480)
Q Consensus 266 m~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~ 297 (480)
+|||+ |++||++..+..++.++|++....
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 899999999999999999987544
No 35
>PRK10836 lysine transporter; Provisional
Probab=99.59 E-value=7.7e-12 Score=130.06 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=146.2
Q ss_pred CCCCcccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 27 DDDGRLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
+|+.+.+|+.+.++.+...++++||+|++..|. +.++.|....++..++++++....+..+.|...+.+ +.| +.
T Consensus 8 ~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P-~sG----g~ 82 (489)
T PRK10836 8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMP-VSG----SF 82 (489)
T ss_pred CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC----CH
Confidence 344567888999999999999999999999986 556777655688899999999999999999776654 333 45
Q ss_pred HHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCC
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 185 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (480)
...+++.+|+..++++.+..++................+..+.+ ..+...+..++ ++++-+.....
T Consensus 83 y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~~lN~~g 148 (489)
T PRK10836 83 ATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP-------------DTPGWIWSALF-LGVIFLLNYIS 148 (489)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CCchHHHHHHH-HHHHHHHHHHc
Confidence 56667788998888888877764333322212222222221111 00111111111 12222222233
Q ss_pred cchhhHHHHHHHHHHHHHHHH--HHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhh
Q 011638 186 FDQLWWLSIVAAVMSFTYSTI--GLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 263 (480)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (480)
.|..+.+.....+..+...+. +++............+....+...++.+....+.....+.....|+|.|...+....
T Consensus 149 v~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a 228 (489)
T PRK10836 149 VRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAA 228 (489)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 333333322222111111111 111111111111100000001000000001123345555666789999999999999
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
+|+|||+ |++||++..++..+.++|++....-....+
T Consensus 229 ~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 229 GESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999997 899999999999999999987665444433
No 36
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.57 E-value=4.3e-12 Score=130.59 Aligned_cols=245 Identities=16% Similarity=0.174 Sum_probs=148.0
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGW-IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G~-~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
.+.+|+.+.++.+...++.++|+|++..|... ...|- ...++..++.+++....+....|.....+. .|. .+.|.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG-~y~y~- 80 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGA-DYVYL- 80 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC-ceeeH-
Confidence 45788899999999999999999999988764 44553 335666778888888888888887766543 332 24554
Q ss_pred HHHHhccCcceeehhHHHH-HHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCc
Q 011638 108 AVRSNLGGFQVKICGLVQY-LNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDF 186 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~-~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (480)
++.+||...++..+..+ .........+....++++..+.+. ++ . ......+..+..+-....+..
T Consensus 81 --~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---------~~-~--~~~~~~~~~~~~~~~ln~~gv 146 (445)
T PRK11357 81 --KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---------DP-L--LGKFIAAGLIIAFMLLHLRSV 146 (445)
T ss_pred --HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------ch-H--HHHHHHHHHHHHHHHHHHhhh
Confidence 46799988888888644 233334444555555555432210 00 0 001111111122222334555
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhc
Q 011638 187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 266 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 266 (480)
|....+..+..+..+...++++...+... ...+.+...+.. .....+..+...++....|+|.|........+|+
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~~-~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 221 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFWF-KAENFAAPTTTA----IGATGSFMALLAGISATSWSYTGMASICYMTGEI 221 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccc----ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh
Confidence 55555544444433332212222212111 111111110000 0011123466788899999999999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 011638 267 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 299 (480)
Q Consensus 267 ~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy 299 (480)
|||+ |+++|++..+..++.++|++......
T Consensus 222 k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 222 KNPG---KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cCcc---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 89999999999999999998766544
No 37
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.55 E-value=7.9e-13 Score=131.49 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=226.6
Q ss_pred CCCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 28 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 28 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
+..+.+||.+.+..+..++++++|+|++..|....+.+ ...+.++.+++++++...+..-.|.....+ ++|. +|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ip-ksGg---d~ 81 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIP-KSGG---DY 81 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCc---ch
Confidence 45567889999999999999999999999999987544 566778888999999999999988655433 4454 33
Q ss_pred HHHHHHhccCcceeehhHHHHHHHHHHH-HHHHHHhhhh-hhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCC
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLNLFGVA-IGYTIASSIS-MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 183 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (480)
.-+ .++||+.......+.-++....+. ..+-+.++++ ++..++ .|...+..-..+.+ .++-+...
T Consensus 82 ayi-~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~-~~l~~lt~ 148 (479)
T KOG1287|consen 82 AYI-SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKLLAA-ALLVLLTL 148 (479)
T ss_pred hhH-HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHHHHH-HHHHHHHH
Confidence 333 355899888777776655555544 6677777776 554443 24433333333333 33334444
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCC---CCcccccccCcccchhhHHHHHHHHHHHHHHhcccc
Q 011638 184 PDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVA---ETGKF---RGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSI 257 (480)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 257 (480)
.|...+++.+.+..+.+..-.+.....++.... ..... +.+.++ ...+..+...++-.-.|||.|..
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g-------~~~~~g~i~lafysglfa~~GWd 221 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG-------SDTDVGNIALAFYSGLFAFSGWD 221 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc-------CcCchHHHHHHHHHhhhcccCch
Confidence 666667777777766666544333333333222 11111 110111 11233367788999999999999
Q ss_pred hhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCcc-cccccc-cCCCchHHHHHHHHHHHH
Q 011638 258 ILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL--SPGN-LLTGFG-FYNPYWLLDIANAAIVIH 333 (480)
Q Consensus 258 ~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~--~~~~-il~~~~-~~~~~~~~~~~~~~~~i~ 333 (480)
.+=.+.+|+|||+ |++|+++.+++.+++++|+++=+..+.+-..+ ..++ +...+. ...+.+. ..+.+++.++
T Consensus 222 ~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS 297 (479)
T KOG1287|consen 222 YLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALS 297 (479)
T ss_pred hhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHH
Confidence 9999999999997 89999999999999999999877666544332 1111 111111 0112232 4556666666
Q ss_pred HHHhhhhhhhchHHHHHHHh-cccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhh
Q 011638 334 LVGAYQVFCQPLFAFIEKQA-HQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLG 412 (480)
Q Consensus 334 ~~~s~pl~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G 412 (480)
.+.++.-.++..-+.+.... +.+.|+. +..++ +++.+. .....+.....++..+..|+..+++..+
T Consensus 298 ~~G~~n~~ifs~SR~~~~~areG~LP~~-~s~i~---------~~~~TP---~~allf~~~~~i~~~~~~d~~~LIny~s 364 (479)
T KOG1287|consen 298 LIGSLNSVIFSSSRLFYAGAREGHLPAF-FSMIS---------VRRFTP---RPALLFSGLLSIVLSLIGDFDQLINYVS 364 (479)
T ss_pred hhhhhhhHHHHHHHHHHHHHHccCccHH-HHhhc---------CCCCCC---hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666544433322222221 1222221 00000 000000 1234444455555666678999999888
Q ss_pred hhhhhhhHhhhhHHHHHHHhCCCC
Q 011638 413 ALGFWPLTVYFPVEMYIAQKKIPK 436 (480)
Q Consensus 413 a~~~~~l~~ilP~~~~l~~~~~~~ 436 (480)
=.........+=+++++|.++++.
T Consensus 365 f~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 365 FAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCC
Confidence 777777777788999999887654
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.54 E-value=1.6e-11 Score=126.19 Aligned_cols=240 Identities=11% Similarity=-0.032 Sum_probs=152.2
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
+.+|+.+.++.+...++.++|......+.+.++.|+..-++..++.+++....+..+.|...+.+. .| .....++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~G----g~y~~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AG----GGYGFAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHHHH
Confidence 467888999999999999998555666888889999755566677777777777778887665442 33 3445668
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
+.+||..+++..+..++........+....++.+..+++.. . .+...+..++++-+...+..|..+
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------------~-~~~~~~~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------------P-GWLAALVFYIVFIGINILGVGEAA 144 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------c-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988888788888888888877665421 0 111212222222223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcc--cchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCC
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTV--SETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKS 268 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~ 268 (480)
.+..+..+..+.. ++...... ..+.......+. .+.+. ..+....+.+.++...+|+|.|........+|+||
T Consensus 145 ~i~~~~~~~~~~~---l~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 145 KLEFVVTAVAIIA---LGVFIGAM-VPHFDSANLFNG-PQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred hHHHHHHHHHHHH---HHHHHHHH-hccCCHHHhccC-CccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444333322211 11111111 011000000000 00000 01122346778888999999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011638 269 PPSESKTMKKASLISVGVTTLFYMLCGCF 297 (480)
Q Consensus 269 p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~ 297 (480)
|+ |+.+|++..+..++.++|...-..
T Consensus 220 P~---r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 220 PK---RDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred cc---cccCHHHHHHHHHHHHHHHHHHHH
Confidence 97 899999999999988888876443
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.53 E-value=3.5e-12 Score=124.96 Aligned_cols=368 Identities=16% Similarity=0.171 Sum_probs=233.0
Q ss_pred CCCcccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 011638 28 DDGRLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 106 (480)
Q Consensus 28 ~~~~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~ 106 (480)
++.+.+|..+.++--+.-++..||+|. +.-..+.+.+|-- -++..+++|++.+.-++.+.|...+ ++.. .++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~~----gSF~ 80 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPVS----GSFS 80 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCC----CcHH
Confidence 344567878899999999999999998 4567777777754 4566778888899999999996554 2222 2999
Q ss_pred HHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH--HHHHH--HHHhhC
Q 011638 107 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI--AFGIV--EIVLSQ 182 (480)
Q Consensus 107 ~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~~--~~pl~~ 182 (480)
+.+++.+|++.+++.++..++.....+++-+..++.+++..++. . +.|.. +..++ .+=|..
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------v--P~Wv~al~~~~l~~~~NL~s 145 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------V--PQWVFALAAVVLLLAVNLIS 145 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------C--cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988863 1 22332 22222 223334
Q ss_pred CCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCc-ccchhhHHHHHHHHHHHHHHhcccchhH
Q 011638 183 IPDFDQLWW-LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILI 260 (480)
Q Consensus 183 ~~~l~~l~~-~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~ 260 (480)
.|....+-+ ++++=++.++.+.++.+.+.+ .....+......++. |+. -.-+....+++.++.+.+|||.+...+-
T Consensus 146 Vk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl-~~hGGffP~G~~g~~~~~~~v~Faf~GiElvG 223 (462)
T COG1113 146 VKVFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNL-WDHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCcccccc-ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 565555553 455544444433222222222 222221111111111 111 0113345688899999999999999999
Q ss_pred hhhhhcCCCCccchhhhHHHHHHHHHHHHHHH-----HHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHH
Q 011638 261 EIQDTVKSPPSESKTMKKASLISVGVTTLFYM-----LCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLV 335 (480)
Q Consensus 261 ~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~-----~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 335 (480)
...+|-|||+ |..+|++.--..-..++|+ ++.+.-+-.++++.++.+.. |..-.-.+...+.|+.++....
T Consensus 224 itA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~-f~~iGi~~Aa~i~N~VVLtAa~ 299 (462)
T COG1113 224 ITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTV-FSLIGIPFAAGIMNFVVLTAAL 299 (462)
T ss_pred HHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHH-HHHcCCcccccceeEEEeechh
Confidence 9999999997 7888988766666666665 44455555666654443322 1111223445566666777777
Q ss_pred HhhhhhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhh
Q 011638 336 GAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGA 413 (480)
Q Consensus 336 ~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~v~~l~Ga 413 (480)
++..--++..-+.+..+..+...++.+ .+-++-.+| ..-++.+.+...++.++....|+ |+.+.+..+.
T Consensus 300 S~~NSglystsRmL~~la~~g~APk~~-~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~ 370 (462)
T COG1113 300 SALNSGLYSTSRMLYSLAKQGDAPKAF-AKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGL 370 (462)
T ss_pred hcccccccccchHHHHHhhcCcccHhH-hhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 776555555555555543322111111 111111233 55667777788888888889994 5555555544
Q ss_pred hhhhhhHhhhhHHHHHHHhC
Q 011638 414 LGFWPLTVYFPVEMYIAQKK 433 (480)
Q Consensus 414 ~~~~~l~~ilP~~~~l~~~~ 433 (480)
. ....+.+-.+.|+|.+|
T Consensus 371 ~--~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 371 G--LLFVWLMILLSQLKLRK 388 (462)
T ss_pred H--HHHHHHHHHHHHHHHHh
Confidence 3 34555566777888776
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.50 E-value=6.2e-11 Score=121.78 Aligned_cols=350 Identities=14% Similarity=0.095 Sum_probs=195.8
Q ss_pred HHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhH
Q 011638 45 IITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGL 123 (480)
Q Consensus 45 l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~ 123 (480)
.++++||+|++..|. +.++.|. ..++..++.+++....+..+.|...+.+ +.| +..+.+++.+||..++++.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P-~~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATP-DTG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CHHHHHHHHcChHHHHHHHH
Confidence 367899999999887 6678886 4888889999999999999999776543 233 56677779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 011638 124 VQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 124 ~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 202 (480)
..++.....+.......+..+....+ .. ..+.+ +..++++-+...+..|..+.+.....+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~ 141 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVI 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 98877666555554444443332211 11 12222 2222222223334444444444444433332
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccc--ccCccc-chhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccchhhhHH
Q 011638 203 YSTIGLGLGIAKVAETGKFRGSLTGI--SIGTVS-ETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKA 279 (480)
Q Consensus 203 ~~~i~~~~~i~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~ 279 (480)
..++.+...+.......+.. ...+. .+++.. .+..+.++..++....|+|.|...+....+|+|||+ |+++|+
T Consensus 142 ~li~~ii~~~~~~~g~~~~~-~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPra 217 (446)
T PRK10197 142 AILAFIFLGAVAISGFYPYA-EVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHhcCCCCCC-CCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHH
Confidence 22222212121111111100 00010 011000 012334778999999999999999999999999997 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCc-c-------cccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHHH
Q 011638 280 SLISVGVTTLFYMLCGCFGYAAFGDLSPG-N-------LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEK 351 (480)
Q Consensus 280 ~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~-~-------il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 351 (480)
+..+...+.++|++..+.-......+..+ + ..+.. ...+...+.+++.++....+..-.+....+.+..
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a 294 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYS 294 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998666543332222111 0 11111 1234445666666677677766655555555555
Q ss_pred HhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhcc--chHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011638 352 QAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP--FFNDVVGLLGALGFWPLTVYFPVEMYI 429 (480)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~v~~l~Ga~~~~~l~~ilP~~~~l 429 (480)
.-+++.-.+ +..+.++.+.| ..-.+....+.++..+.....| .++.++++.+... .+.|+++++.++
T Consensus 295 ~ardg~lP~-~~~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 295 LSRRGDAPA-VMGKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred HHcCCCcCH-HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 433221111 11111111222 2222223222233333322223 3677777776554 488888888887
Q ss_pred HHhC
Q 011638 430 AQKK 433 (480)
Q Consensus 430 ~~~~ 433 (480)
+.+|
T Consensus 364 ~lr~ 367 (446)
T PRK10197 364 RMRK 367 (446)
T ss_pred HHHH
Confidence 7654
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.47 E-value=3.6e-11 Score=120.21 Aligned_cols=239 Identities=14% Similarity=0.136 Sum_probs=161.1
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
|.|.+|..+.++++++|+|++.+|....+.+--.+.+..++.+++.......+.+..++.+.. +..|..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~------~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK------NFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHhh
Confidence 568899999999999999999999998775555677778888888888888888887765422 78899999999
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchh-HHHHHHHHHhhCCCCcchhhHHH
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IAFGIVEIVLSQIPDFDQLWWLS 193 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~~~~~pl~~~~~l~~l~~~s 193 (480)
|+.++++.+....+....+.......++.+....- + + .+.+. .+..+++.-....+.++...+++
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~--------~--tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P--------R--TPIIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--------C--CCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999887777776666666666666543321 1 1 12222 23333333344556777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHH-HHHHHHhcccchhHhhhhhcCCCCcc
Q 011638 194 IVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQAL-GDIAFAYSYSIILIEIQDTVKSPPSE 272 (480)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~em~~p~~~ 272 (480)
.+-....+...+++ +... ..++...+ ... |.. +.+..+...+. +...++|.+...+.....++|+|
T Consensus 142 ~i~~~~~i~~~~~i--l~~~-~~~~~~~~-~l~-----P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~--- 208 (359)
T TIGR00912 142 EILLIIFLILFILV--LILL-APKLGNIK-NLL-----PVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK--- 208 (359)
T ss_pred HHHHHHHHHHHHHH--HHHH-hcccccHH-Hcc-----Ccc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh---
Confidence 66655443321011 1111 11111000 010 011 11223444433 47889999888888888899987
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 011638 273 SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP 307 (480)
Q Consensus 273 ~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~ 307 (480)
|+.+|+...+..++.++|...-......+|.+..
T Consensus 209 -~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 209 -KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVT 242 (359)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence 7899999999999999999999999999987533
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.45 E-value=1e-10 Score=119.82 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=178.8
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccC
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVT-YYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGG 115 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s-~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~ 115 (480)
++++.+...+++++|+|++..| .....|.. .++..++.+.+. ........|..++.+ +.| ...+..++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p-~~G----G~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYP-SAG----GIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTT-SST----THHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC-CcC----eeeehhhhcccc
Confidence 6889999999999999999999 77666665 565566655555 567777777655433 233 456677888999
Q ss_pred cceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchh-HHHHHHHHHhhCCCCcchhhHHHH
Q 011638 116 FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IAFGIVEIVLSQIPDFDQLWWLSI 194 (480)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~~~~~pl~~~~~l~~l~~~s~ 194 (480)
+.+++..+...+.....+.++.....+.+...+.... . ..+...+. .+..++..-....+..|..+++..
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDL-------N--PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG-------T--CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccccc-------c--cccchheeeeecccccceEeeechhhhhhhhhh
Confidence 9999999999988888888888888888876654200 0 00001111 122222333334455666666655
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccc
Q 011638 195 VAAVMSF-TYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSES 273 (480)
Q Consensus 195 ~~~~~~~-~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~ 273 (480)
......+ ....+.+...+.....+ ..+.. ....++..+. .....+.+++..+|+|.|........+|+|+
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~----- 216 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFS-GFNSL--SFSLSTFFPS-GWPGFLAGFSVAFFAFSGFEAIASLAEENKN----- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC-HHH------SHSCSSCS-SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----
T ss_pred hhhhhhhhhhhhhheeEEEeeeccc-ccccc--cccccccCCc-cccchhhHHHHHHhhcccccccccccccccc-----
Confidence 5555544 22222222223322111 11100 0000000011 1114578899999999999999999999775
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---cccc---ccc-ccCCCchHHHHHHHHHHHHHHHhhhhhhhchH
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP---GNLL---TGF-GFYNPYWLLDIANAAIVIHLVGAYQVFCQPLF 346 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 346 (480)
|+++|++..+..++.++|.+.........+++.. ++.. ..+ .....++...+..+...+....+....+....
T Consensus 217 k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 217 KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchh
Confidence 6899999999999999999998877777666422 1211 000 00112355556666666777777666665555
Q ss_pred HHHHHHhcc
Q 011638 347 AFIEKQAHQ 355 (480)
Q Consensus 347 ~~~~~~~~~ 355 (480)
+.+..+.++
T Consensus 297 R~l~~~a~d 305 (426)
T PF13520_consen 297 RLLYAMARD 305 (426)
T ss_dssp HHHHHHHHT
T ss_pred hcccccccc
Confidence 566665443
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.37 E-value=3.9e-10 Score=113.01 Aligned_cols=366 Identities=16% Similarity=0.090 Sum_probs=243.1
Q ss_pred cccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
+.+|+...++-.+.-+++.||+|. ++...+.+++|-...++..++++.+.+..+..+.|.....+ .+| +|...+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence 467889999999999999999999 56999999999999999999999999999999999777655 444 699999
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhh--CCCCcc
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLS--QIPDFD 187 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~--~~~~l~ 187 (480)
.+..++-.+..+.+..+++..-++..-++..+..++..++. ..+...|..++.++++.+- -.|...
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999888876642 1233567777666655543 445554
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcccccccCc-ccchhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 188 QLWW-LSIVAAVMSFTYSTIGLGL-GIAKVAETGKFRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 188 ~l~~-~s~~~~~~~~~~~~i~~~~-~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
..-+ +|.+=++.++.+. +++. .+.....+ ++..-.-.|.+ -.-...+.++...+-+..|+|.|...+--...
T Consensus 184 E~Efw~s~iKV~~ii~Fi--i~gii~~~Gg~~~---~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAg 258 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFI--ILGIIIICGGGPT---HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAG 258 (541)
T ss_pred eehHHHHHHHHHHHHHHH--HHHHHHhcCCCCC---CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeec
Confidence 4443 4444444433321 2222 22222222 21111111211 11223456778888999999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHH-HHhh-hcCCC----------CCcccccccccCCCchHHHHHHHHHHH
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGC-FGYA-AFGDL----------SPGNLLTGFGFYNPYWLLDIANAAIVI 332 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~-~gy~-~fG~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i 332 (480)
|-+||+ |.+||++.-.+.-..++|++.-+ .|.+ .|.|. ..++....+....-..+..+.|+++++
T Consensus 259 Es~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~ 335 (541)
T COG0833 259 ESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT 335 (541)
T ss_pred ccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence 999997 89999999999988888886433 3333 23331 111111111111123466688888988
Q ss_pred HHHHhhhhhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhcc--chHHHHHH
Q 011638 333 HLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP--FFNDVVGL 410 (480)
Q Consensus 333 ~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~v~~l 410 (480)
+++++=.--++...+.+..+.+..+.++.+ .+-++-..| ...++.+.++-+++++-+..-. -+.-++++
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~APk~f-~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~i 406 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGKAPKIF-AKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNI 406 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCCCchHH-HhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 888887666666677777765443322222 111111222 3444556666666666555522 25667777
Q ss_pred hhhhhhhhhHhhhhHHHHHHHh
Q 011638 411 LGALGFWPLTVYFPVEMYIAQK 432 (480)
Q Consensus 411 ~Ga~~~~~l~~ilP~~~~l~~~ 432 (480)
.|.. ..++++--++.|++.|
T Consensus 407 sg~s--~~i~W~~I~~shirFR 426 (541)
T COG0833 407 SGLS--GFIAWGSICLSHIRFR 426 (541)
T ss_pred HHHH--HHHHHHHHHHHHHHHH
Confidence 7654 3677777788888865
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.37 E-value=1.3e-09 Score=113.00 Aligned_cols=290 Identities=14% Similarity=0.131 Sum_probs=175.5
Q ss_pred CCcccccchHHH-HHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 29 DGRLKRTGTLWT-ASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 29 ~~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
+.+.+|+.+.++ ......+.++|.|++.+|......+ ....+..++.+++....+....|..+..+ +.| .+.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-~~G----G~y~ 80 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-SAG----GAYA 80 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC----Ceee
Confidence 344555666776 8888889999999999999888776 22233345555566666677777666433 333 4555
Q ss_pred HHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHH---HHHHHHhhCCC
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAF---GIVEIVLSQIP 184 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~---~~~~~pl~~~~ 184 (480)
..++.+||+.++++.+..++.......+.....++.+..+++... . . .... +..... ....+-+...+
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----~~~~-~~~~~~~~~~~~~~~~ln~~ 151 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG---L-L----SIGP-LLIILIALALIALLTLLNLR 151 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---h-h----cCCc-hHHHHHHHHHHHHHHHHHHh
Confidence 667779999889999999998888888888888887666665210 0 0 0000 222222 22222333445
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhh
Q 011638 185 DFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQD 264 (480)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (480)
..|...++..+..+..+...++.....+.....+. .. ..... . ...........++....++|.|-....+..+
T Consensus 152 G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~--~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 225 (466)
T COG0531 152 GIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPF--N--PGGGSFGGILAAILLAFFAFTGFEAIATLAE 225 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCc--c--cccchHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 55555555555555444433222222233322211 00 00000 0 0111223577889999999999999999999
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCcc-----cccccccCCCchHHHHHHHHHHHHHHHhh
Q 011638 265 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL-SPGN-----LLTGFGFYNPYWLLDIANAAIVIHLVGAY 338 (480)
Q Consensus 265 em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~-~~~~-----il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 338 (480)
|+|||+ |+++|++..++..+.++|++.........+++ .... ...........+...+..+...+....+.
T Consensus 226 E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 302 (466)
T COG0531 226 EVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSL 302 (466)
T ss_pred HhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 999996 78999999999999999999888888777752 2211 11111011113555555566666666665
Q ss_pred hhhh
Q 011638 339 QVFC 342 (480)
Q Consensus 339 pl~~ 342 (480)
.-..
T Consensus 303 ~~~~ 306 (466)
T COG0531 303 LAWI 306 (466)
T ss_pred HHHH
Confidence 4333
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.32 E-value=2.2e-08 Score=103.96 Aligned_cols=261 Identities=11% Similarity=-0.037 Sum_probs=147.9
Q ss_pred CCcccccchHHHHHHHHHhhh-hhhhhhHHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 011638 29 DGRLKRTGTLWTASAHIITAV-IGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 106 (480)
Q Consensus 29 ~~~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~af-~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~ 106 (480)
+.+.+|+.+.++.+..-++.+ +|+|+...+..- .+.|- ..+...++.++.....+..+.|...+.+ ..| ...
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P-~aG----G~Y 81 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYP-ISG----AIY 81 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC----CHH
Confidence 446788899999988888875 899998865544 55665 4677777788888888888888766544 333 344
Q ss_pred HHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCc-cCCC--chhHH-HHHHHHHhhC
Q 011638 107 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCH-MNSN--PYMIA-FGIVEIVLSQ 182 (480)
Q Consensus 107 ~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~--~~~ii-~~~~~~pl~~ 182 (480)
..+++.+||...+++.+..++................+..+.+... ..+.+.... .... .+.+. ..+++.-+..
T Consensus 82 ~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 82 QWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQ--IIGEDPTLTSPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hcccCccccCCCchHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999988877655554444444444433322110 000000000 0011 12221 1112222233
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011638 183 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEI 262 (480)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 262 (480)
.+..|..+.+..+..+..+...++++.....+. ++.+.. ..+.. +.+. .+.....+..+.....|+|.|-.....+
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~~-~f~~~-~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 235 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGPGV-VFDTS-VTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGEL 235 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcce-eeecC-CCCC-CccHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 344555555554444433322222222222111 111100 00000 0000 0111234455667778999999999999
Q ss_pred hhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011638 263 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 304 (480)
Q Consensus 263 ~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 304 (480)
.+|+|||+ |+.||++..+..+..++|.++-+......++
T Consensus 236 aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 236 SEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999997 8999999999998887776665555544443
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.31 E-value=1.2e-08 Score=106.22 Aligned_cols=259 Identities=10% Similarity=-0.029 Sum_probs=136.2
Q ss_pred CcccccchHHHHHHHHHhhhhh--hhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIG--SGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 106 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~ 106 (480)
.+.+|+.+.++.+..-+. ++| .|+.. .+.+..+.|-...++..++.+++....+..+.|...+.+ +.| +..
T Consensus 8 ~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P-~~G----g~y 81 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP-TSG----GQY 81 (482)
T ss_pred ceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCC-CCc----cHH
Confidence 356788888888777777 444 56644 456677778766677888888888888888898766543 333 344
Q ss_pred HHHHHhccC----cceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHH--HHHHHHh
Q 011638 107 DAVRSNLGG----FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAF--GIVEIVL 180 (480)
Q Consensus 107 ~~~~~~~G~----~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~--~~~~~pl 180 (480)
..+++++|+ ...+++.+..++.....+.+.....++.+..+.... .+. .....+......+. ..+++-+
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TPG----REYIPTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC----CCccccCchhhhhHHHHHHHHHH
Confidence 445566664 445666666666666655555555666555443210 000 00001111111111 1122222
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCccc-c-hhhHHHHHHHHHHHHHHhcccch
Q 011638 181 SQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVS-E-TQKIWRSFQALGDIAFAYSYSII 258 (480)
Q Consensus 181 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~ 258 (480)
...+..|..+.+..+..+..+...++++...+.....+. .+.+..-.++.+.. . .+..+....++....|+|.|-..
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~ 235 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKF-NDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDG 235 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcch
Confidence 233334444444333222222111111111111110000 00000000000000 0 01123455666677899999999
Q ss_pred hHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 259 LIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 259 i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
.....+|+|||+ |++||++..+..++.++|.+..+.-+...+
T Consensus 236 ~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 236 TAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999997 899999999988877655544443333333
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.27 E-value=3.6e-08 Score=102.86 Aligned_cols=255 Identities=15% Similarity=0.030 Sum_probs=133.8
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVT-YYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s-~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
.+||.++++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ........|.....+...| .-....+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~ 77 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMN 77 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHH
Confidence 4677899999999999999976 568888888875 556666666554 3455667776554432123 3345566
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhh-hhhHhhhhhcccCCCCCCCCccCCC-chhHHHHHH--HHHhhCCCCc
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSI-SMMAIERSNCFHSKGDKNPCHMNSN-PYMIAFGIV--EIVLSQIPDF 186 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~-~~~ii~~~~--~~pl~~~~~l 186 (480)
+++||+.+++..+..+................ ....++.. +.....+.. ..+.. .+.++..+. ++-....|.+
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWHFL-GLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhhhh-cccchHHHHHHHHHHHHHHHHHHccch
Confidence 77999988876655433332221111100000 00001110 000000000 01111 111111111 2333455667
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCCCCcccccccCc--ccchhhHHHHHHHHHHHHHHhcccchhHhhh
Q 011638 187 DQLWWLSIVAAVMSFTYSTIGL-GLGIAKVAETGKFRGSLTGISIGT--VSETQKIWRSFQALGDIAFAYSYSIILIEIQ 263 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (480)
+..+.++.++....+...++.+ ...+.........+.+....++.+ .+...+..+...++....|+|.|........
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7776666554433332111111 111111111111100000000000 0001111356677888999999999999999
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 299 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy 299 (480)
+|+|||+ |++||++..+...+.++|.+..+...
T Consensus 235 ~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 235 DKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 89999999999999999998654443
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.26 E-value=1.3e-08 Score=105.73 Aligned_cols=248 Identities=14% Similarity=0.042 Sum_probs=121.7
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHHHHHhc
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 113 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (480)
|.+.+.-++..+.+++ ++..+|.+ ++.|.. .++..++.+++.. -.+....|.....+ +.| ...+..++++
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P-~~G----G~y~~~~~a~ 72 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWP-EKG----GVFRWVGEAF 72 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCC-CCC----CceeeHhhhc
Confidence 3455555554444444 44556755 567753 3444444444333 35666667655443 233 3445667889
Q ss_pred cCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHH---HHHhhCCCCcchhh
Q 011638 114 GGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIV---EIVLSQIPDFDQLW 190 (480)
Q Consensus 114 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~---~~pl~~~~~l~~l~ 190 (480)
|++.+++..+..++.......+-+...+..+....+.. .. .+......++.....++ .+-+...+..|..+
T Consensus 73 G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 73 GARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA---TV---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cc---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999888777653322211111111111111100 00 00000112222222221 22334556666655
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccch-hhHHHHHHHHHHHHHHhcccchhHhhhhhcCC
Q 011638 191 WLSIVAAVM-SFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSET-QKIWRSFQALGDIAFAYSYSIILIEIQDTVKS 268 (480)
Q Consensus 191 ~~s~~~~~~-~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~ 268 (480)
.++...... .+...++.+.+.+.......+.+ .+.++.+..+. .+......+ ..+.|+|.|........+|+||
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~---~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQ---IPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 555433221 11111111222222211111111 01111111111 111222222 3467899999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011638 269 PPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 304 (480)
Q Consensus 269 p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 304 (480)
|+ |+++|++..+..++.++|.+..+.-....++
T Consensus 223 P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 223 PD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred cc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 97 8999999999999999998866655444443
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.26 E-value=1.3e-08 Score=106.16 Aligned_cols=239 Identities=10% Similarity=-0.017 Sum_probs=122.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTY--YTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~--~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
+||.+.++-++..+..+. ++..+| .+++.| ++.+...+++.+.+ -.+....|......+.+| .....++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 456788877777766665 557888 466777 34444555555443 356666676554321223 3444557
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHH---HHHhhCCCCcc
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIV---EIVLSQIPDFD 187 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~---~~pl~~~~~l~ 187 (480)
+++|++++++..+..++.......+........+...+.. +. .. .+.++..+..++ .+-+...+..|
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---~~------~~-~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF---PA------LN-EDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ch------hc-cCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7899999988777777655432222221111111212110 00 00 112222222222 22233344444
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhc
Q 011638 188 QLWWLSIVAAVMSFTY-STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 266 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 266 (480)
....++.++.+..... .++++.+.+.....+.+...+.+ .++..+.....+....+....|+|.|-.......+|+
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEID---SHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCc---HHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 4444443332211111 11122222222222221111100 0001111111233445555789999999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 011638 267 KSPPSESKTMKKASLISVGVTTLFYMLCGC 296 (480)
Q Consensus 267 ~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~ 296 (480)
|||+ |+++|++..+..++.++|.+..+
T Consensus 221 knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 221 ENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred cCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 9997 89999999999999998876443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.24 E-value=2.3e-10 Score=118.30 Aligned_cols=376 Identities=14% Similarity=0.013 Sum_probs=230.6
Q ss_pred CcccccchHHHHHHHHHhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.+.+|+.++++-.+.-++++||+|++- ...+.++.|-..-++..++.+...+.++..+.|...+.+...| ++...
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~y 101 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTY 101 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceee
Confidence 467889999999999999999999955 6888888888878888888889999999999996655432112 45555
Q ss_pred HHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchh--HHHHHHHHHhhCCCCc
Q 011638 109 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM--IAFGIVEIVLSQIPDF 186 (480)
Q Consensus 109 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--ii~~~~~~pl~~~~~l 186 (480)
+++..|+.+.+++.+..++...-.+.+.....+.+++.+.. ........+ ..+...|. .+..++++.+...+-.
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVD--TVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--ccccccccc--CCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 66779999999999999999999999999999999988761 000000000 11112222 2333344444444543
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc-ccCcc--cchhhHHHHHHHHHHHHHHhcccchhHhhh
Q 011638 187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTV--SETQKIWRSFQALGDIAFAYSYSIILIEIQ 263 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (480)
-..++.....-+.+.....+...+......+++.++. .+. .|++. ..+..+.++..++.++.|+|.|-..+-...
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~--ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNW--IGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCC--cCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 4444444333333332222222222222222221110 111 12110 111225578899999999999999999999
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh--hcCCC-CCccccccccc------CCCchHHHHHHHHHHHHH
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA--AFGDL-SPGNLLTGFGF------YNPYWLLDIANAAIVIHL 334 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~--~fG~~-~~~~il~~~~~------~~~~~~~~~~~~~~~i~~ 334 (480)
+|-|||+ |+.|+++..++..++++|.+..+.--+ .|.+. ..++....-|+ ..-..+..+.+++.++.+
T Consensus 256 ~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 256 EEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 9999997 899999999999999999987765443 23331 22222111111 111223348889999999
Q ss_pred HHhhhhhhhchHHHHHHHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-----hHHHHH
Q 011638 335 VGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-----FNDVVG 409 (480)
Q Consensus 335 ~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-----~~~v~~ 409 (480)
.++-.--+++.-+.+..+.+...-.+-+..- +.+..-+....+..+..++.+..... ++.+++
T Consensus 333 ~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v------------~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~ 400 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYALAKDGLAPKFFARV------------DRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVN 400 (554)
T ss_pred HHHHHHHhHHhHHHHHHHHhcCCcchHHhhc------------CCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9998888888888888875543322211111 11111222233333344444444432 578888
Q ss_pred HhhhhhhhhhHhhhhHHHHHHHh
Q 011638 410 LLGALGFWPLTVYFPVEMYIAQK 432 (480)
Q Consensus 410 l~Ga~~~~~l~~ilP~~~~l~~~ 432 (480)
+.|-- ..++|.+=++.|++.|
T Consensus 401 ~~si~--tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 401 LSSIG--TLFAWTLVALSHLRFR 421 (554)
T ss_pred HHhHH--HHHHHHHHHHHHeeee
Confidence 87754 4566666666666654
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.08 E-value=1.9e-09 Score=112.07 Aligned_cols=290 Identities=17% Similarity=0.118 Sum_probs=171.0
Q ss_pred HHhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhH
Q 011638 45 IITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGL 123 (480)
Q Consensus 45 l~~~~iG~GiL~-lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~ 123 (480)
-+.+++|+|++. .+.+..+.|.....+..++.+++...++.-+.|..++.+ +.| ++.+.+++.+|+..+..+.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeH
Confidence 356788988855 678888999987888899999999999999999777655 333 56677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHh--hhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 011638 124 VQYLNLFGVAIGYTIASSISMMAI--ERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 201 (480)
Q Consensus 124 ~~~~~~~g~~i~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (480)
..++.............+..++.+ .+.. .....+.. .+..++.+++.. ......|..+.+...-.+..+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~i~~~~~~~-l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL-------PSTWVWGI-LIAIIFILLITL-LNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc-------cccccccc-hhhhhhhhhhhh-hhhhhhhccchHHHHHHHHhh
Confidence 988777777777777666665544 2210 00000000 112222222222 222333333332222222211
Q ss_pred HHHHHHHHHH-HHHhhhcCCCCC---ccccc---ccCc---ccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCc
Q 011638 202 TYSTIGLGLG-IAKVAETGKFRG---SLTGI---SIGT---VSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS 271 (480)
Q Consensus 202 ~~~~i~~~~~-i~~~~~~~~~~~---~~~~~---~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~ 271 (480)
...+..+... +......++.+. ..+.. ...+ .+...++.+++.++...+++|.|-.......+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~- 230 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR- 230 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-
Confidence 1111111111 111112122111 00000 0000 00112245888999999999999999999999999997
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc---------cccccCCCchHHHHHHHHHHHHHHHhhhhhh
Q 011638 272 ESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLL---------TGFGFYNPYWLLDIANAAIVIHLVGAYQVFC 342 (480)
Q Consensus 272 ~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il---------~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 342 (480)
|++||++..++....++|+......-...+.+..+... .........+...+.++..+.+...+..-.+
T Consensus 231 --k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 231 --KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred --hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 89999999999999999998888777666654322111 1111112344555666666666666654444
Q ss_pred hchHHHHHH
Q 011638 343 QPLFAFIEK 351 (480)
Q Consensus 343 ~p~~~~~~~ 351 (480)
+...+.+..
T Consensus 309 ~~~sR~l~a 317 (478)
T PF00324_consen 309 YAASRLLYA 317 (478)
T ss_pred cccceeehh
Confidence 444444444
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.06 E-value=7.4e-08 Score=94.66 Aligned_cols=236 Identities=16% Similarity=0.089 Sum_probs=162.1
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 35 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 35 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
|.|..|....+..+++|+|++.+|....+.+ --|.+..++.+.......++..+..++.+. .+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~------~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPG------KTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhC
Confidence 4578899999999999999999999987664 144445555555555666666665554332 289999999999
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchh-HHHHHHHHHhhCCCCcchhhHHH
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IAFGIVEIVLSQIPDFDQLWWLS 193 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~~~~~pl~~~~~l~~l~~~s 193 (480)
|+.+.++.+...+.........+...+|.+....- .+.+.|. ....+++......+.++.+.+.+
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL--------------PETPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999888888888888888887776542 1122333 33344444555678888888855
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCCccc
Q 011638 194 IVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSES 273 (480)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~ 273 (480)
.+-....+...+++... ..++...+. .. +..+.+..+...+.....+.|.+-..+.-+...+|+|
T Consensus 140 ~~~~~~~~i~~~~i~~~----~~~~~~~~~-l~------P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~---- 204 (320)
T PF03845_consen 140 EILFPIFLILLLLILLL----SIPNIDWDN-LL------PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK---- 204 (320)
T ss_pred HHHHHHHHHHHHHHHHH----hcccCCHHH-ee------CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 55444433222211111 111111011 11 1112344567777777888888888888888999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 306 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~ 306 (480)
|+.+|....+..++.++|...-+.....||.+.
T Consensus 205 ~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 205 KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 788999999999999999999999999999753
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.87 E-value=1.7e-08 Score=87.85 Aligned_cols=218 Identities=15% Similarity=0.279 Sum_probs=128.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhc-------------CCCC----------
Q 011638 41 ASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS-------------GDPV---------- 97 (480)
Q Consensus 41 ~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~-------------~~~~---------- 97 (480)
...-+.|-++|+|.|++|.+|+..||++++.++.+.+++++.+...+.++... .+++
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 34556788999999999999999999999999999999999999999886510 0000
Q ss_pred ----------CCc------------------ccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 011638 98 ----------TGK------------------RNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 149 (480)
Q Consensus 98 ----------~~~------------------~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (480)
.++ +....+|++...|.|.+-.+..+++.+++||-...|....-..+-.+.-
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itc 176 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITC 176 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhh
Confidence 000 0125678888889999999999999999999999998776655544432
Q ss_pred hh-cccCCC-CCCCCccC--------------CCchhHHHHHH-HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011638 150 SN-CFHSKG-DKNPCHMN--------------SNPYMIAFGIV-EIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGI 212 (480)
Q Consensus 150 ~~-~~~~~~-~~~~~~~~--------------~~~~~ii~~~~-~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i 212 (480)
.- .-...+ ..++|+-+ ++.+++++.++ .+|+.+ -++++-+.+.++...+-..-....+.+.-
T Consensus 177 aa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~~l~t 255 (319)
T KOG3832|consen 177 AAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGISLAT 255 (319)
T ss_pred hhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchhhhhh
Confidence 11 000001 12222211 12223343332 334432 33444455544444333221111111111
Q ss_pred HHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638 213 AKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 269 (480)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 269 (480)
.+..++. .. . .++...+-++-..++.-.|+|.+|++.|.....++-+
T Consensus 256 mqaeeda----a~---a---~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 256 MQAEEDA----AA---A---HPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhcccc----cc---c---CCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 1111111 00 0 1222222344456788899999999999988877644
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.73 E-value=4.1e-06 Score=84.43 Aligned_cols=260 Identities=14% Similarity=0.053 Sum_probs=128.7
Q ss_pred CcccccchHHHH---HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 011638 30 GRLKRTGTLWTA---SAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 106 (480)
Q Consensus 30 ~~~~~~~s~~~~---~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~ 106 (480)
.+.+|.-++++. .|.+++..-|. .-++.+....+|-..-.-..++.+......+.-|.|.....+ ..|. -|-
T Consensus 44 qef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P-tsGg---Ly~ 118 (550)
T KOG1289|consen 44 QELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP-TSGG---LYF 118 (550)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC-CCCc---HHH
Confidence 344666665543 33444433321 123555555555554444466667777778888888665544 2332 233
Q ss_pred HHHHHhccCcceeehhHHHH-HHHHHHHHHHHH---HhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhC
Q 011638 107 DAVRSNLGGFQVKICGLVQY-LNLFGVAIGYTI---ASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ 182 (480)
Q Consensus 107 ~~~~~~~G~~~~~~~~~~~~-~~~~g~~i~y~i---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~ 182 (480)
-.+.. -+|+++.++.+..- .+..+.....-. ..++.+.....- . ++....++.....++..+.+..++
T Consensus 119 waa~l-ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l---~----np~y~~~~~~~~~v~~ai~~v~~l 190 (550)
T KOG1289|consen 119 WAAVL-APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL---T----NPNYEPTNYHQFGVFEAILFVHGL 190 (550)
T ss_pred HHHHh-cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh---c----CCCCcccceEeehHHHHHHHHHHH
Confidence 33322 35555555444332 222222111111 111111111111 1 111122223333333333222222
Q ss_pred C--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc-ccCcccchh-hHHHHHHHHHHHHHHhcccch
Q 011638 183 I--PDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTVSETQ-KIWRSFQALGDIAFAYSYSII 258 (480)
Q Consensus 183 ~--~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~ 258 (480)
+ .--|.+++++-+++...+...++.+........++.+++...... +..+.+... ..|.+..++-.-.+.+.|-..
T Consensus 191 ln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa 270 (550)
T KOG1289|consen 191 LNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDA 270 (550)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCc
Confidence 2 223456666665555554433333322222222221111100000 011122222 456777778888889999999
Q ss_pred hHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011638 259 LIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 305 (480)
Q Consensus 259 i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 305 (480)
...+.+|-||++ |+.||.+..+..++.++=.++-+.-...-++|
T Consensus 271 ~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 271 AAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred hHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999998 89999999999999888777777666677753
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.51 E-value=0.0002 Score=73.67 Aligned_cols=193 Identities=15% Similarity=0.062 Sum_probs=111.2
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCC
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 183 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (480)
++.-+.+..||.+|..+..++..+...|-........++.+..+++....+.......-........+++..+.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999999999999999999988888765321100000000000112234555566665556
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHH-HhcccchhHhh
Q 011638 184 PDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAF-AYSYSIILIEI 262 (480)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-af~~~~~i~~i 262 (480)
...+-++.....+........ .+.++...+........+.. ...++....+.+..+++..+= .-..-.+.+..
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dy 230 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAF----GMLIWALSKAHGKGPLGELT--GTLHGSTGAWAFLYALSLVIGSFATWATNAPDF 230 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCccccCC--CCCCcchhHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 655555555555554433211 11112212211110000000 001122334555555555332 23556688999
Q ss_pred hhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh----cCCCC
Q 011638 263 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA----FGDLS 306 (480)
Q Consensus 263 ~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~----fG~~~ 306 (480)
.+.+|++ |+-.+....++....+....+|+.+-.. +|+..
T Consensus 231 sRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 231 TRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999987 4455557777777777777777777765 87653
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.40 E-value=0.00032 Score=66.56 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=84.0
Q ss_pred HHHHHHHhhhhhhhhhH---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCc
Q 011638 40 TASAHIITAVIGSGVLS---LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 116 (480)
Q Consensus 40 ~~~~~l~~~~iG~GiL~---lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~ 116 (480)
.-.+-.+.+++|+|.=+ +=.-|.+-|+. |+...++++++-..++..+.+..++.+.. +|+|.-++.+||+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~------~y~~~~~~v~~~~ 79 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNAT------SYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHhhHH
Confidence 34566677999999765 34445566776 77778888888888888888888876654 9999999999999
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 011638 117 QVKICGLVQYLNLFGVAIGYTIASSISMMAIER 149 (480)
Q Consensus 117 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (480)
...+.+..+.+.++++++.-+.-.|..+++.++
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 999999999999999999888888878776664
No 57
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.33 E-value=0.0048 Score=64.28 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=95.2
Q ss_pred CcccccchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGS-GVLSLAWATAQLGWIAGPSVM---FLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l---~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
..-.|+.+++...+.+..+.+|+ ..+..|....+.|+....... ....+...+-+..+.+..|+.+ ..|.
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~ 110 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN------AVTL 110 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccH
Confidence 34567778888888888887776 456677766677763211111 1111111122233333334332 3499
Q ss_pred HHHHHHhccCcc-eeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 106 VDAVRSNLGGFQ-VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 106 ~~~~~~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
.|+-++-||++. +.+..+...+..+......+...+..++.+++ ++....+++.++++.......
T Consensus 111 ~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~G 176 (483)
T PRK09442 111 NDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFG 176 (483)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhc
Confidence 999999888754 55555555656666667777777777777664 222344556666677788889
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 011638 185 DFDQLWWLSIVAAVMSFTY 203 (480)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~ 203 (480)
.++...+.-.+..+..+..
T Consensus 177 Gl~av~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 177 GFRAVVLTDALQGIVMLVG 195 (483)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999998888876665543
No 58
>PRK12488 acetate permease; Provisional
Probab=98.28 E-value=0.0081 Score=63.48 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=101.8
Q ss_pred cccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYY-TSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~-s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.-.|+.+++...+.+..+.++++. ++.|......|+-. . +..+...+.+. ...++.+-.|+.. .+|.+|.
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~-~~~~g~~~g~~~~~~~~a~~lr~~g------~~T~~d~ 135 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-L-LYALGVLAGWPIILFLIAERLRNLG------KYTFADV 135 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-H-HHHHHHHHHHHHHHHHHHHHHHHCC------CcchHHH
Confidence 335778899899999998888665 77898887888742 2 12222222222 2233444344322 2589998
Q ss_pred HHHhcc-CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcc
Q 011638 109 VRSNLG-GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 109 ~~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (480)
-++=|| |..|.+..+...+.........+...+..++.+++ ++...-+++.+++.+.......++
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGML 201 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchh
Confidence 887777 56888888877777777788888888888777764 222333556666777777888999
Q ss_pred hhhHHHHHHHHHHHHHH
Q 011638 188 QLWWLSIVAAVMSFTYS 204 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~~~ 204 (480)
...+...+..+..+...
T Consensus 202 av~~td~iQ~~im~~~~ 218 (549)
T PRK12488 202 ATTWVQIIKAVLLLSGT 218 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888876665533
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.26 E-value=0.0055 Score=63.58 Aligned_cols=227 Identities=10% Similarity=0.038 Sum_probs=115.1
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHH-HHHHHHHHHHHHHhhh
Q 011638 64 LGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQY-LNLFGVAIGYTIASSI 142 (480)
Q Consensus 64 ~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~-~~~~g~~i~y~i~~~~ 142 (480)
.++..+++..++-.++...-+.+..+...+ .+ .++.-+.+..||++|.++..+... +...+-........++
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~~----~G---l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~ 129 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGSK----YG---VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSL 129 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccc----cC---CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444444444444332221 22 378999999999999998888874 5667777777777788
Q ss_pred hhhHhhhhhccc--CCCCCCC-CccCCCch--hHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 143 SMMAIERSNCFH--SKGDKNP-CHMNSNPY--MIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAE 217 (480)
Q Consensus 143 ~l~~l~~~~~~~--~~~~~~~-~~~~~~~~--~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~ 217 (480)
.+..++.....+ ..+++.+ ...+...+ .+++.++..++. ....+.++.+..++.......++......+...
T Consensus 130 al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-- 206 (484)
T PRK11375 130 ALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-- 206 (484)
T ss_pred HHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 877766543211 1111100 01111112 224445555554 455677777777666655432222222222221
Q ss_pred cCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhc-ccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 011638 218 TGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYS-YSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC 296 (480)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~ 296 (480)
..........-+........+.+..++...+=++. .-.+.|...+..|++ |+-.+....++.+...+...+|+
T Consensus 207 --g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~ 280 (484)
T PRK11375 207 --GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASV 280 (484)
T ss_pred --CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000000111123445555544444454 455788999988887 55666666666666666544454
Q ss_pred HH----hhhcCCCC
Q 011638 297 FG----YAAFGDLS 306 (480)
Q Consensus 297 ~g----y~~fG~~~ 306 (480)
+. ...+|+..
T Consensus 281 ~~~~~a~~~~g~~~ 294 (484)
T PRK11375 281 CIIAGASIHYGADT 294 (484)
T ss_pred HHHHHHHHHhCCCc
Confidence 43 34666643
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.23 E-value=0.0098 Score=61.77 Aligned_cols=153 Identities=9% Similarity=0.050 Sum_probs=98.4
Q ss_pred CcccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHH--HHHHH-HHHHHHHHHHhhhcCCCCCCcccccH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMF--LFSFV-TYYTSTLLAACYRSGDPVTGKRNYTY 105 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~--~~~~~-s~~s~~~l~~~~~~~~~~~~~~~~~y 105 (480)
-.-.|+.+++.....+..+.+|++. ++.|....+.|+........ ..+.+ ..+-...+.+..++.+ ..|.
T Consensus 36 ~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~ 109 (471)
T TIGR02119 36 FLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN------AITI 109 (471)
T ss_pred eEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccH
Confidence 3456778899999999999998665 56787777777632111110 01111 1111222223234322 3499
Q ss_pred HHHHHHhccCc-ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 106 VDAVRSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 106 ~~~~~~~~G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
+|.-++-||++ .+.+..+...+.+++...+.+...+..++.+++ ++....+++.++++.......
T Consensus 110 ~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~G 175 (471)
T TIGR02119 110 NDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFG 175 (471)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhh
Confidence 99999999965 466777777777777777777778877777764 222334555666677777889
Q ss_pred CcchhhHHHHHHHHHHHH
Q 011638 185 DFDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~ 202 (480)
.++...+...+..+..+.
T Consensus 176 G~~av~~td~iQ~~v~~~ 193 (471)
T TIGR02119 176 GFRAVALTDAIQGIVMFT 193 (471)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999988888766554
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.13 E-value=0.00066 Score=69.09 Aligned_cols=150 Identities=9% Similarity=0.141 Sum_probs=92.3
Q ss_pred cccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
.|+.+++...+++..+.+|++ ++..|....+.|+.. ....+............+.+-.|+.+ ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG------AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--------SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccc------hhhhhhhhhh
Confidence 467788888999998888864 577888888888863 33333333333444555565555433 3499999999
Q ss_pred hccCcc--eeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchh
Q 011638 112 NLGGFQ--VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 112 ~~G~~~--~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (480)
-+|++. +.+..+...+.........+...+..++.+++ ++.....++..++.+.......++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999988 66655556666777777778888887776664 22234455666677777888889998
Q ss_pred hHHHHHHHHHHHHH
Q 011638 190 WWLSIVAAVMSFTY 203 (480)
Q Consensus 190 ~~~s~~~~~~~~~~ 203 (480)
.+...+..++.+..
T Consensus 144 ~~td~iQ~~i~~~~ 157 (406)
T PF00474_consen 144 AWTDFIQGVIMIIG 157 (406)
T ss_dssp -SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877665543
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.09 E-value=0.0083 Score=60.46 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=130.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcc
Q 011638 38 LWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQ 117 (480)
Q Consensus 38 ~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~ 117 (480)
|....+++.+-..|+.... .++..+++..++-.++...-+-+...... +.| .++.-+.+..||++|
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~G---l~~~v~sR~~FG~~G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTG---LSAMGSLKLSLGSKG 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC---cCHHHHHHHHHccch
Confidence 5556666666666553311 45555555555544444443333333222 222 378999999999999
Q ss_pred eeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 011638 118 VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAA 197 (480)
Q Consensus 118 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~ 197 (480)
..+..+...+...|-........++.++.+++... +. .+...+.++..++..+.+ ....+.++++..++.
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~-~~--------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~ 142 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF-GE--------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSV 142 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998886421 10 011233444444444444 345677777777776
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHH-hcccchhHhhhhhcCCCCccchhh
Q 011638 198 VMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFA-YSYSIILIEIQDTVKSPPSESKTM 276 (480)
Q Consensus 198 ~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~em~~p~~~~~~~ 276 (480)
.+....++........+ .+. ....+ .+.+ .....+++...-. -..-...+...+..|+| |+.
T Consensus 143 ~~~~i~~~~~~~~~~~~---~~~-~~~~~------~~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~ 205 (386)
T TIGR02358 143 WLLLIATLWLLVVVFSK---ADL-SELWN------RAGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNP----RHV 205 (386)
T ss_pred HHHHHHHHHHHHHHHhc---cch-hhhcC------CCCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCC----cce
Confidence 66554222222111111 111 00000 0011 1222222222111 12334478888888776 677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011638 277 KKASLISVGVTTLFYMLCGCFGYAAFGDL 305 (480)
Q Consensus 277 ~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 305 (480)
.+....+..+...+-..+|.....+.++.
T Consensus 206 ~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 206 FLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77888888888888888998888777764
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.95 E-value=0.014 Score=59.47 Aligned_cols=149 Identities=14% Similarity=0.183 Sum_probs=100.3
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+..........++..+..++.+ ..|..|.-+.
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG------AYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC------CCchhHHHHH
Confidence 3667788888888888887554 6788877777854 222222222233344455555444322 3499999999
Q ss_pred hccC-cceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 112 NLGG-FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 112 ~~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
-||+ ..+.+..+...+..+......+...+..++.+++ ++...-.++.+++++.......++...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 9998 4666667777788888888888888888877764 122333455666666777888899999
Q ss_pred HHHHHHHHHHHH
Q 011638 191 WLSIVAAVMSFT 202 (480)
Q Consensus 191 ~~s~~~~~~~~~ 202 (480)
+.-.+..+..+.
T Consensus 141 ~Td~iQ~~i~~~ 152 (407)
T TIGR00813 141 WTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHH
Confidence 888888766554
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.90 E-value=0.05 Score=57.58 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=95.8
Q ss_pred cccccchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIG-SGVLSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.-.|+.+++...+.+..+.++ +..+..|....+.|+- +.... +...+.+ ....++.+-.|+. + .+|..|.
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr~----g--~~T~~d~ 135 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRNL----G--RYTFADV 135 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHHc----C--CccHHHH
Confidence 345677788888888888777 4568888877777864 22211 1122222 2334444444432 2 2599998
Q ss_pred HHHhcc-CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcc
Q 011638 109 VRSNLG-GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 109 ~~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (480)
-++=|| |..+.+..+...+.........+...+..++.+++ ++...-+++.+++.........++
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGML 201 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhH
Confidence 887776 45677766666666666677777777777776654 222333556666677777888899
Q ss_pred hhhHHHHHHHHHHHH
Q 011638 188 QLWWLSIVAAVMSFT 202 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~ 202 (480)
...+...+..+..+.
T Consensus 202 av~~td~iQ~~im~~ 216 (549)
T TIGR02711 202 ATTWVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889888887766554
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=0.015 Score=60.55 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=103.0
Q ss_pred cccccchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHH---HHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 011638 31 RLKRTGTLWTASAHIITAVIG-SGVLSLAWATAQLGWIAGPSVMFL---FSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 106 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~---~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~ 106 (480)
...|+.+.+-.......+.++ .-.+.+|....+.|+....+.... ..+.-.+-...+.+..+ ..+ ..|.+
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~----~~~--~~T~~ 108 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK----ARG--ATTIP 108 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC--CccHH
Confidence 335555556667777766666 777899999999998654444432 22223333333333332 222 34999
Q ss_pred HHHHHhcc-CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCC
Q 011638 107 DAVRSNLG-GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 185 (480)
Q Consensus 107 ~~~~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (480)
|.-++-|| +..+.+..+...+...+.+...+...+..++..++ . +...-.++.++++......-.
T Consensus 109 d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i-------------~~~~~~~~~~~~v~~Yt~~gG 174 (493)
T COG0591 109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I-------------SYVTGILIGALIVALYTFLGG 174 (493)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C-------------CHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 88999999999999999999999999998866554 1 122234455566666677788
Q ss_pred cchhhHHHHHHHHHHHH
Q 011638 186 FDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 186 l~~l~~~s~~~~~~~~~ 202 (480)
+++..+...+.......
T Consensus 175 ~~av~~Td~iqg~im~i 191 (493)
T COG0591 175 LRAVVWTDFIQGLIMLI 191 (493)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888887776655444
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=97.88 E-value=0.04 Score=55.97 Aligned_cols=205 Identities=15% Similarity=0.070 Sum_probs=104.5
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhh
Q 011638 64 LGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSIS 143 (480)
Q Consensus 64 ~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~ 143 (480)
.++..+++..++-.++...-+.+....-. +.| .++.-+.+..||.+|..+..+...+...+-........++.
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~----k~G---~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~ 111 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA----KTG---LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIP 111 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555555444443333333333222 122 37999999999999999998888888777666666666665
Q ss_pred hhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 011638 144 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG 223 (480)
Q Consensus 144 l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~ 223 (480)
+..+.+ .+...+.+++.++..+..... .+.++++...+........+. ..+.-..+.... +
T Consensus 112 l~~~~~--------------~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~~~~~~---~~~~~~~~~~g~-~ 172 (404)
T PRK11017 112 VVKATG--------------LDINLLIVLSGLLMTVTAYFG-ISALTILSRIAVPAIALLGGY---SVWLAVNDVGGL-D 172 (404)
T ss_pred HHHHhC--------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCch-h
Confidence 554432 111224455555555554332 344555544444333221111 111111111110 0
Q ss_pred cccccccCcccchhhHHHHHHHHHHHHHH-hcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011638 224 SLTGISIGTVSETQKIWRSFQALGDIAFA-YSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAF 302 (480)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~f 302 (480)
.... .. .. +...+..++...+=. -..-.+.+...+..|++ |+.......+..+...+-.++|...-...
T Consensus 173 ~~~~--~~-~~---~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~ 242 (404)
T PRK11017 173 GLKA--IV-PA---EPLDFSAALTLVVGSFISGGTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVY 242 (404)
T ss_pred hhhc--CC-CC---CcccHHHHHHHHHHHHHHhHhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 00 00 112333444333222 24456788888888876 44445566666666666777777666667
Q ss_pred CC
Q 011638 303 GD 304 (480)
Q Consensus 303 G~ 304 (480)
|+
T Consensus 243 ~~ 244 (404)
T PRK11017 243 GQ 244 (404)
T ss_pred CC
Confidence 65
No 67
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.86 E-value=0.028 Score=56.68 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred HHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCC
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 185 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (480)
-.+++..||.++.++..+.+.+.+.|-...-.+..++..... + ..+..+++++.+++....+.. .
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~------------~--~~~~~~~ili~g~l~~l~~if-G 148 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG------------T--GLPVWAGILIIGVLMTLVTIF-G 148 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC------------C--CCcHHHHHHHHHHHHHHHHHH-h
Confidence 345667799999999999999999999999999998872111 1 223345555555554444433 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcccccccCcccchhhHHHHHHHHHHHHHHh-cccchhHhhh
Q 011638 186 FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGK-FRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIILIEIQ 263 (480)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~ 263 (480)
.|.+..++..+....+.... ..++....... .+... ...+.+..++..+++...=.+ ..-+......
T Consensus 149 ~r~l~~l~~~a~~~~~~lf~----~l~~~~~~~~~~~~~~~-------~~~~~~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 149 YRALHKLERIAVPLLLLLFL----YLLALLFRSKGGLDALW-------VKGPTSPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccccceee-------ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34444444444443332111 11222222111 11100 011111224444444333222 5556678888
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-Ccccccc
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-PGNLLTG 313 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-~~~il~~ 313 (480)
+-+|+|++ ++.-.....+......+-+++|.....+-|+.. ..++...
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~ 266 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLG 266 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHh
Confidence 88988843 356666667777777888888888888888866 3334443
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.71 E-value=0.044 Score=54.72 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHhhhhhhhhhHHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceee
Q 011638 44 HIITAVIGSGVLSLAWATA-QLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKI 120 (480)
Q Consensus 44 ~l~~~~iG~GiL~lP~af~-~~G--~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 120 (480)
.+..-.+|+|.|-.|-... +.| |..+.+.+++.++..-..+.. +.. +.| . +|+++.++. ||+...+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~----~~g-G--~~~~l~~~~-g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA----LVG-G--GYDSLSARI-GKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee----ecC-C--CHHHHHHHh-ChHHHHH
Confidence 3456678999999987775 343 677777777777766655444 111 222 1 799998884 8888777
Q ss_pred hhHHHHHHH
Q 011638 121 CGLVQYLNL 129 (480)
Q Consensus 121 ~~~~~~~~~ 129 (480)
..+.+.+..
T Consensus 72 f~~~~~l~i 80 (378)
T TIGR00796 72 FTVILYLTI 80 (378)
T ss_pred HHHHHHHHH
Confidence 776665443
No 69
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.60 E-value=0.14 Score=54.21 Aligned_cols=151 Identities=11% Similarity=0.047 Sum_probs=96.7
Q ss_pred cccccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
.-.|+.+++...+.+..+.++++ .++.|....+.|+-.-... ............++.+-.|+.+ ..|-.|.-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~~------~~T~~e~l 101 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKFG------KYTVPDFI 101 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHCC------CccHHHHH
Confidence 44678889999999998888754 5778877777776421111 1111111223345555555433 24888877
Q ss_pred HHhccCc-ceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcch
Q 011638 110 RSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 188 (480)
Q Consensus 110 ~~~~G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (480)
++=||++ .+.+..+...+.........+...+..++.+++ ++...-+++.++++........++.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 7778855 577777677667777777777777777776664 2223345566666777778888999
Q ss_pred hhHHHHHHHHHHHH
Q 011638 189 LWWLSIVAAVMSFT 202 (480)
Q Consensus 189 l~~~s~~~~~~~~~ 202 (480)
..+.-.+..+..+.
T Consensus 168 V~~TD~iQ~iim~i 181 (552)
T TIGR03648 168 VTWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888887655443
No 70
>PRK09395 actP acetate permease; Provisional
Probab=97.58 E-value=0.15 Score=54.01 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred cccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.-.|+.+++...+.+..+.+|++. ++.|-...+.|+.. . +..+...+.. ....++.+-.|+. + .+|+.|.
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~-~~~~~~~~g~~~~~~~~~~~~r~~----g--~~T~~d~ 137 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-L-IYSIGFLVGWPIILFLIAERLRNL----G--KYTFADV 137 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-H-HHHHHHHHHHHHHHHHHHHHHhhC----C--CccHHHH
Confidence 345777888888888888888554 77888877888743 2 1122122222 2233344434432 2 3599999
Q ss_pred HHHhccC-cceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcc
Q 011638 109 VRSNLGG-FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 187 (480)
Q Consensus 109 ~~~~~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (480)
-+.=||+ ..+.+..+...+.........+...+..++.+++ ++...-+++.+++.+.......++
T Consensus 138 l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~ 203 (551)
T PRK09395 138 ASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGML 203 (551)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchH
Confidence 8888884 5777777766666666666667777777766653 222334556666777778888899
Q ss_pred hhhHHHHHHHHHHHH
Q 011638 188 QLWWLSIVAAVMSFT 202 (480)
Q Consensus 188 ~l~~~s~~~~~~~~~ 202 (480)
...+.-.+..+..+.
T Consensus 204 av~~TD~iQ~iim~~ 218 (551)
T PRK09395 204 ATTWVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888877665554
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.55 E-value=0.13 Score=52.34 Aligned_cols=199 Identities=16% Similarity=0.214 Sum_probs=100.7
Q ss_pred ccHHHHHHHhccCcceeehhHH---HHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCC---ccCCCchh-HHHHH
Q 011638 103 YTYVDAVRSNLGGFQVKICGLV---QYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPC---HMNSNPYM-IAFGI 175 (480)
Q Consensus 103 ~~y~~~~~~~~G~~~~~~~~~~---~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~-ii~~~ 175 (480)
.+|+...+..||-++..+-.+. ....-||.. .-..+..+..++.+...+....++.. ..+...++ .+..=
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 5899999999998876554443 333333332 33344445555544332211111100 11111111 11111
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCcccccccCcccchhhHHHHHHHHHHHHHHh
Q 011638 176 VEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKF--RGSLTGISIGTVSETQKIWRSFQALGDIAFAY 253 (480)
Q Consensus 176 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 253 (480)
++-.++..+.+++++++-..+..++... ..++.++-..+.+.. ..+.++ +..+.+...|.+..++..++=.|
T Consensus 180 ~l~~l~~~~g~~~Ir~~~~~a~p~~~~~---~~gl~Iw~~~~a~g~~~~~~~p~---~~~~~~~~~w~~~~~~~~~v~~~ 253 (497)
T COG1953 180 VLQLLVLFKGMESIRKFETWAGPLVYIA---MLGLAIWALVKAGGSSILGELPA---GTVSGSNSSWAFLAGIAAWVGFW 253 (497)
T ss_pred HHHHHHHhcCHHHHHHHHHHhchHHHHH---HHHHHHHHHHhcCCcCccccCCC---CCCCcchhHHHHHHHHHHHHHHH
Confidence 2334556688889998877777666542 333444444333331 111111 11223334455555444443333
Q ss_pred -cccchhHhhhhhcCCCCccchhhhHHHHHHHH----HHHHHHHHHHHHHhhhcCCC--CCccccccc
Q 011638 254 -SYSIILIEIQDTVKSPPSESKTMKKASLISVG----VTTLFYMLCGCFGYAAFGDL--SPGNLLTGF 314 (480)
Q Consensus 254 -~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~----i~~~~Y~~~g~~gy~~fG~~--~~~~il~~~ 314 (480)
+..-|+|...+.-|+|+ .-.+--.++.. +..++=++.+..++..||+. .+.++..++
T Consensus 254 Atl~lN~~DFsRfa~s~~----~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~ 317 (497)
T COG1953 254 ATLALNIPDFTRFAKSQK----AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARF 317 (497)
T ss_pred HHHhcCCchhhcccCChh----hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHh
Confidence 55678899999998874 23322233333 34444445566677899998 445677765
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.41 E-value=0.22 Score=51.89 Aligned_cols=157 Identities=10% Similarity=0.053 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
.-.|+.+++...+.+..+.+++. .+..|....+.|+.. ........+........+.+-.|+..+ ...+..|..|.-
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l 110 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFF 110 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHH
Confidence 34677788888888888877755 466887777778753 211111112122333344433332110 011235889998
Q ss_pred HHhccCcceee---hhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCc
Q 011638 110 RSNLGGFQVKI---CGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDF 186 (480)
Q Consensus 110 ~~~~G~~~~~~---~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (480)
++=||++.+.+ ..+...+.........+...+..++.+++ ++....+++..++.........+
T Consensus 111 ~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 111 ENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhH
Confidence 88899654443 33333333333444555556666665553 22233455566667777788889
Q ss_pred chhhHHHHHHHHHHHHH
Q 011638 187 DQLWWLSIVAAVMSFTY 203 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~ 203 (480)
+...+.-.+..+..+..
T Consensus 177 ~av~~TD~iQ~~i~~~~ 193 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888877665543
No 73
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.40 E-value=0.004 Score=60.58 Aligned_cols=158 Identities=12% Similarity=0.059 Sum_probs=109.4
Q ss_pred CccCCCCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 011638 24 KCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNY 103 (480)
Q Consensus 24 ~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~ 103 (480)
.+..+||.+.-..+.+-.+.+=..++-|+|.+.=|..-.+-||+++.++.++-++...--.....-.... +.+. .
T Consensus 40 A~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv---R~~G--~ 114 (376)
T PF02554_consen 40 AHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV---RHKG--K 114 (376)
T ss_pred eeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh---cCCC--c
Confidence 3344556665556677788888999999999999999999999999999998777766555444432211 1122 2
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCC
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 183 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (480)
|.+|++++..||+++.++.+..++.+.....++....++.+...-. -....++.+...+.+-+..-
T Consensus 115 Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~--------------~~~~~~~~I~~Ai~~G~~~y 180 (376)
T PF02554_consen 115 SIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSPW--------------AATSSLLFIPIAILFGLLVY 180 (376)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--------------HHHHHHHHHHHHHHHhHhhe
Confidence 9999999999999999999999999999999988888877643211 01122334444444444443
Q ss_pred CCcchhhHHHHHHHHHH
Q 011638 184 PDFDQLWWLSIVAAVMS 200 (480)
Q Consensus 184 ~~l~~l~~~s~~~~~~~ 200 (480)
|+=-++...+.++.+..
T Consensus 181 ~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 181 KRGGNLGPATIIGVVLL 197 (376)
T ss_pred ecCCchHhhHHHHHHHH
Confidence 44344566666665544
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.23 Score=52.45 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 34 RTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 34 ~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
|-++......=.+-.+.|.=+ +-+-|....+|...+.++.++|++++..|+.-+...+.+-- ++... +|-=+. +.
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGV-VpaGG--sYfmIS-Rs 188 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGV-VPAGG--SYFMIS-RS 188 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccCCC--eeEEEe-cc
Confidence 333444444444455555433 45889999999999999999999999988887776554322 22222 555444 45
Q ss_pred ccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhH
Q 011638 113 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMA 146 (480)
Q Consensus 113 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 146 (480)
+|+..+..++++..+-.-.....|++-.-+.+-.
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 7888888888888877777777888777666554
No 75
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0027 Score=64.79 Aligned_cols=237 Identities=16% Similarity=0.187 Sum_probs=135.8
Q ss_pred hHHHHHHH-HHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 37 TLWTASAH-IITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 37 s~~~~~~~-l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
+|+..++. .+-++.|.= .|-++|...|+|...+++++.++..++..|..=-..-..+-+.+.|. .|--+ .+.+|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yfli-s~slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLI-SRSLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEE-Eeccc
Confidence 45544443 223344432 35689999999999999998888877776655443322222222232 23222 23478
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHH
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 194 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (480)
+..+.-+++...+.+.-.+..|.+.+++...++++... .+ ..+. ...+..++++.++..+ .+|.+.
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--~~------~i~g--i~~vt~~ill~i~~ag----~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--KE------MIDG--IGSVTVLILLAINVAG----VEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--HH------Hhcc--hhHHHHHHHHHhhhcc----chhHHH
Confidence 88888888888888888999999999999999998531 00 1111 1223333344444433 455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhcC----CCCCcccccccCcccc-hhhHHHHHHHHHHHHHHhcccchhHhhhhhcCC
Q 011638 195 VAAVMSFTYSTIGLGLGIAKV-AETG----KFRGSLTGISIGTVSE-TQKIWRSFQALGDIAFAYSYSIILIEIQDTVKS 268 (480)
Q Consensus 195 ~~~~~~~~~~~i~~~~~i~~~-~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~ 268 (480)
+..+..+..+ +.+.-.+... .... .+.+...+.-.++..+ ..+-..+|+.|++++=+.+|.-.=..+.+++++
T Consensus 173 ~q~~ll~il~-iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 173 LQIVLLLILL-IAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHH-HHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCC
Confidence 5544433211 1222111111 1100 0000000000111111 111125566777777788777777888999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHH
Q 011638 269 PPSESKTMKKASLISVGVTTLFYMLCG 295 (480)
Q Consensus 269 p~~~~~~~~~~~~~s~~i~~~~Y~~~g 295 (480)
|+ +..|+....+....+.+|..+.
T Consensus 252 Pq---~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 252 PQ---KAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred ch---hhcccchhhhhhhhhhhhhhhh
Confidence 98 7899999999999999996543
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.92 E-value=0.61 Score=47.79 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHh
Q 011638 68 AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAI 147 (480)
Q Consensus 68 ~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l 147 (480)
...++.++.+.+..+....+. .|. -..+|+ +..|+.++-+||+..++..+...+.+.+..++-++-.+.-++.+
T Consensus 65 y~LLW~llls~~~~~~~Q~~~--~Rl-givTG~---~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 65 YTLLWVILLSNLMAMLLQSLS--AKL-GIATGR---DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hHh-hhhcCC---CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444433332 221 113333 78999999999988887777777677777777777666666554
Q ss_pred h
Q 011638 148 E 148 (480)
Q Consensus 148 ~ 148 (480)
+
T Consensus 139 ~ 139 (439)
T PRK00701 139 F 139 (439)
T ss_pred h
Confidence 4
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.90 E-value=0.084 Score=55.04 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=121.9
Q ss_pred hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHH
Q 011638 55 LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAI 134 (480)
Q Consensus 55 L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i 134 (480)
|-+++...++|++-.+..+++.-.+..+|..-+..-+.+ -.+.|.. -|--+ .+.+|+..+--++.+.++.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTN-GaV~GGG--aYymI-SRsLGpEfGGSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTN-GAVRGGG--AYYMI-SRSLGPEFGGSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CceecCc--eEEEE-EcccCcccCCeeeehhhHHHHhcch
Confidence 456888888998888888877777777766665543322 2233333 33322 2446776555566666666666666
Q ss_pred HHHHHhhhhhhHhhhhhcccCCC-CCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-H
Q 011638 135 GYTIASSISMMAIERSNCFHSKG-DKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLG-I 212 (480)
Q Consensus 135 ~y~i~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~-i 212 (480)
.++.-+-+-+-+.++ ....+ +..+......||-++.+.++..+|+.-.+-.-+-++-.+++.-+. +.+.+. +
T Consensus 164 m~isG~vE~il~nfG---~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~---is~s~~si 237 (945)
T KOG1288|consen 164 MNISGFVEPILDNFG---KEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVV---ISVSLFSI 237 (945)
T ss_pred hhhhhhhHHHHHhcC---ccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH---HHHHHhhh
Confidence 666666555444443 22222 111223345677665554444444322221224444444433221 111110 0
Q ss_pred -HHhhhcCCCCCc-----------------ccccccCcc--------c---chhhHHHHHHHHHHHHHHhcccchhHhhh
Q 011638 213 -AKVAETGKFRGS-----------------LTGISIGTV--------S---ETQKIWRSFQALGDIAFAYSYSIILIEIQ 263 (480)
Q Consensus 213 -~~~~~~~~~~~~-----------------~~~~~~~~~--------~---~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (480)
....-..|.+.. .++.+|.+. + ...+..++-..|++++=+-+|...=-.+.
T Consensus 238 ~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMS 317 (945)
T KOG1288|consen 238 PISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMS 317 (945)
T ss_pred hheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcC
Confidence 000011111100 111111100 0 00011133455666655555665556778
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 300 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~ 300 (480)
.|+|+|+ |.+||-...+++.++++|+++.++.-.
T Consensus 318 gELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 318 GELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred ccccCcc---ccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 9999999 789999999999999999998776544
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.86 E-value=0.01 Score=61.11 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=117.9
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQ--LGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~--~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
++|+.++++-+..-.+..+....+.+...... .++..+++..++..++...-..+...... +.| .++..++
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~----r~G---l~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP----RTG---LPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc----ccC---CCchhcc
Confidence 45555666666555555555555444444322 34455555555555544444444444333 233 2688889
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCC--CCCCCCccCCCchh--HHHHHHHHHhhCCCC
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSK--GDKNPCHMNSNPYM--IAFGIVEIVLSQIPD 185 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~--ii~~~~~~pl~~~~~ 185 (480)
+..||.+|..+..+...+...|-........++.+..+++....+.. ++... ......+. +++.++..+ .....
T Consensus 78 R~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~-~~~~g 155 (440)
T PF02133_consen 78 RASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAII-GIALPLWVCFFIFWLIQTL-FAIYG 155 (440)
T ss_dssp TTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHH-HHCTH
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhh-cchhhHHHHHHHHHHHHHH-HHhcC
Confidence 99999999999999999999999999999999999998874311000 00000 00011111 122222222 23355
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHH-HHHHHHHHHHHHh-cccchhHhhh
Q 011638 186 FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-RSFQALGDIAFAY-SYSIILIEIQ 263 (480)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~faf-~~~~~i~~i~ 263 (480)
++.++.+.......... +.+...++...+.+. ++... . ....... .+..++...+-.+ ..-.+.+...
T Consensus 156 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~--~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Dys 225 (440)
T PF02133_consen 156 MKALRRLAVIAAPILLV---VFIGMLIWALSKAGG--GPLLS--A---PASPSPSGSFLAAIALVIGSWISWAPNASDYS 225 (440)
T ss_dssp HHHHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCC--S-----S----S-HHHHHHHHHCCCHHHHCCCHHHH
T ss_pred HHHHHhHHhhhhHHHHh---hhhheeEEEeecCCc--chhhh--C---cccchhHHHHHHHHHHHHhhhhhhhhccccHH
Confidence 66666665555443332 111222222222111 11000 0 0000101 2233333332222 2334456788
Q ss_pred hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 264 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 264 ~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
+.+|++ ++-.+....++.........+|++|...
T Consensus 226 Ry~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 226 RYAKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp TTC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 888876 5566777777777777777767666553
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.77 E-value=0.91 Score=47.56 Aligned_cols=154 Identities=15% Similarity=0.031 Sum_probs=90.6
Q ss_pred cccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCC-CCCCcccccHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVT-YYTSTLLAACYRSGD-PVTGKRNYTYVD 107 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s-~~s~~~l~~~~~~~~-~~~~~~~~~y~~ 107 (480)
.-.|+.+++...+.+..+.+++.. ++.|....+.|+-. .+..+...+. .....++.+-.+... .+.+ ..|..|
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e 112 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPD 112 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHH
Confidence 446788899899998888888666 66888888888653 1222211122 122222221111100 0111 348888
Q ss_pred HHHHhccCccee---ehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 108 AVRSNLGGFQVK---ICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 108 ~~~~~~G~~~~~---~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
.-++=||++.+. +..+...+.....+..-+...+..++.+++ ++....+++.+++++......
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhh
Confidence 888888865433 333444444444445555556666665553 222344556677777788889
Q ss_pred CcchhhHHHHHHHHHHHH
Q 011638 185 DFDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~ 202 (480)
.++...+.-.+..+..+.
T Consensus 179 Gl~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIF 196 (502)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999988888766554
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.77 Score=46.40 Aligned_cols=106 Identities=18% Similarity=0.112 Sum_probs=65.6
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhcc
Q 011638 36 GTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 114 (480)
Q Consensus 36 ~s~~~~~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (480)
.+.....+....+-+|.|=++--..+. +-|+-+..+ ++..-+..+-...+ +.|.- ..+|+ +..|..++.++
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~v--ills~l~~~~~Q~~--~arLg-ivTG~---~laq~ir~~y~ 88 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWV--ILLSNLMAYILQEL--SARLG-IVTGK---GLAEAIRERYL 88 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHH-HHhCC---cHHHHHHHHcc
Confidence 445566666666677766655444442 344433222 22222222222222 12110 12332 68888888899
Q ss_pred CcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 011638 115 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 149 (480)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (480)
|+..++.-+...+....++++-.+..+--++.++.
T Consensus 89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999988887774
No 81
>PRK10484 putative transporter; Provisional
Probab=96.65 E-value=1.1 Score=47.11 Aligned_cols=158 Identities=7% Similarity=-0.004 Sum_probs=83.5
Q ss_pred CcccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 30 GRLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 30 ~~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
-.-.|+.+++-..+.+..+.++++. ++.|....+.|+... .... .+.+.. .....+.+-.++. + ..|..|
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~-~~~~~~~~~~~~~~p~~~r~----~--~~T~~e 105 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEV-TAAIALIILALIFLPRYLKS----G--ITTIPD 105 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHH-HHHHHHHHHHHHHHHHHHhc----C--CccHHH
Confidence 3456788899888888888777655 668877777776431 1111 111121 2333344333432 2 358999
Q ss_pred HHHHhccCcceeehhHHHHHHHHHHH-HHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchh----HHHHHHHHHhhC
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFGVA-IGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM----IAFGIVEIVLSQ 182 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----ii~~~~~~pl~~ 182 (480)
.-++-||++.+.+......+...... ...+...+..+..++.... .. .++...-. ++.+++......
T Consensus 106 ~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~------gi~~~~~~~~~~~~~~~i~~~Yt~ 177 (523)
T PRK10484 106 FLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LL------GISYGAAIWLLVWLIGIIGAIYAV 177 (523)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hc------CCcHHHHHHHHHHHHHHHHhhhhh
Confidence 99988998877665554433322222 2222222333333321000 00 11111111 122344556677
Q ss_pred CCCcchhhHHHHHHHHHHHHH
Q 011638 183 IPDFDQLWWLSIVAAVMSFTY 203 (480)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~ 203 (480)
...++...+.-.+..+..+..
T Consensus 178 ~GGl~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 178 FGGLKAVAVSDTINGIGLLIG 198 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 788888888888887665543
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=96.22 E-value=0.032 Score=58.20 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCccCCCCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCCCcc
Q 011638 23 PKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAAC-YRSGDPVTGKR 101 (480)
Q Consensus 23 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~-~~~~~~~~~~~ 101 (480)
..+..+||.+.-..+.+-.+-+=..++-|+|.+-=|..-.+-||+++.++.++-.++..--..+..-. +.+ .+.|
T Consensus 70 PA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R----~~Gr 145 (701)
T PRK15015 70 PAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR----RDGR 145 (701)
T ss_pred CceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec----CCCc
Confidence 33444555554444555677888899999999999999999999999999998777665444443321 222 2222
Q ss_pred cccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhh
Q 011638 102 NYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISM 144 (480)
Q Consensus 102 ~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l 144 (480)
|.+|++++..|++++.+..+..++.+......+...+.+.+
T Consensus 146 --Sig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 146 --SLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred --cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888877777777766666555
No 83
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.04 E-value=2 Score=43.56 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH-----HH
Q 011638 34 RTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY-----VD 107 (480)
Q Consensus 34 ~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y-----~~ 107 (480)
++.|.+++.+..+.+.+|.| ++.+|-+.+..| ..++.++-+.+++..-+.+.-.....+..+++++. +| .+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g--~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADG--VFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCC--CEecChHHH
Confidence 44789999999999999998 999999977666 55766666666655544443333332222111111 35 66
Q ss_pred HHHHhccCcceeehhHH
Q 011638 108 AVRSNLGGFQVKICGLV 124 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~ 124 (480)
+-+...||+...+..+.
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 77777777765555555
No 84
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.76 E-value=0.078 Score=54.14 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=92.4
Q ss_pred ccccCCCCCCCccCCCCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011638 14 FDVSLPESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS 93 (480)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~ 93 (480)
...|..++...+..+||++--..+.+..+.+=..++-|+|.+-=|..-+|-||.+|.+++++-+++..--...++--...
T Consensus 30 ~~~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv 109 (575)
T COG1966 30 FRLDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV 109 (575)
T ss_pred eecCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee
Confidence 33444444455566777776666788888899999999999999999999999999999998877766554444432111
Q ss_pred CCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhh
Q 011638 94 GDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISM 144 (480)
Q Consensus 94 ~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l 144 (480)
+.+. .|.+|++++..|+..+.+..+...+........+.......+
T Consensus 110 ---R~~G--~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 110 ---RHGG--KSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred ---ccCC--ccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 299999999999999999888877777666666655555444
No 85
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.70 E-value=2.5 Score=42.07 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=53.6
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhC-
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ- 182 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~- 182 (480)
+..|..++-+||+..+...+...+.......+-+...+.-++.+++ ++...+.++.++..+.+..
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHHH
Confidence 6788888888999988888888888888888877777777665542 2234555555555444444
Q ss_pred -CCCcchhhHHHHHH
Q 011638 183 -IPDFDQLWWLSIVA 196 (480)
Q Consensus 183 -~~~l~~l~~~s~~~ 196 (480)
.++.|.+..+...-
T Consensus 109 ~~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 109 SSGGYRRLERILKVL 123 (358)
T ss_pred HhccchHHHHHHHHH
Confidence 66677766654433
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.42 E-value=3.5 Score=41.84 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHh-hC--hhHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQ-LG--WIAGPSVMFLFSFVTYYTST-LLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~-~G--~~~gii~l~~~~~~s~~s~~-~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
..+..-+.+..-..|+|=|-.|-...+ +| |.++.+.+++.++.--.-.. .+.+. + -+++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-~----------~~~~~l~~~v 72 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-G----------GGIEDLASRV 72 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-C----------CCHHHHhccc
Confidence 356677888888999999999988753 34 88888888887765443332 22221 1 1788888775
Q ss_pred ccCcceeehh
Q 011638 113 LGGFQVKICG 122 (480)
Q Consensus 113 ~G~~~~~~~~ 122 (480)
||+...+..
T Consensus 73 -~~~f~~if~ 81 (427)
T PF05525_consen 73 -GPKFALIFT 81 (427)
T ss_pred -CcHHHHHHH
Confidence 565544444
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=94.67 E-value=5.8 Score=40.38 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHH-hhC--hhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATA-QLG--WIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~-~~G--~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
..+..-+.+..-..|+|=|=.|-... ++| |..+.+.+++.++.-= .+...+.+. + . +++|++++.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~--------~-g--~~~~l~~rv 77 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV--------G-G--GVDSLSTPI 77 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------C-C--CHHHHhhhc
Confidence 46778888889999999999988875 344 7778888777665332 333223221 1 1 788888775
Q ss_pred ccCcceeehh
Q 011638 113 LGGFQVKICG 122 (480)
Q Consensus 113 ~G~~~~~~~~ 122 (480)
||+...+..
T Consensus 78 -~~~f~~~f~ 86 (439)
T PRK15433 78 -GKVAGVLLA 86 (439)
T ss_pred -chHHHHHHH
Confidence 565444433
No 88
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.93 E-value=0.99 Score=45.19 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=58.7
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCC
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 183 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (480)
-..+++++.||+.|+.+..+.+.+.|+.++++.....+|.+..+.+ ..+++.|.++..+..+.++..
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999887754 234566676666665555543
Q ss_pred CCcchhhHHH
Q 011638 184 PDFDQLWWLS 193 (480)
Q Consensus 184 ~~l~~l~~~s 193 (480)
.++.+-.++
T Consensus 323 -Gl~~Ii~~~ 331 (378)
T TIGR00796 323 -GLTQIISIS 331 (378)
T ss_pred -CHHHHHHHH
Confidence 454444443
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=92.90 E-value=12 Score=38.10 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=105.8
Q ss_pred ccHHHHHH-HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhh
Q 011638 103 YTYVDAVR-SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLS 181 (480)
Q Consensus 103 ~~y~~~~~-~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~ 181 (480)
+|++|... +.--++.|.+..+...+..+...++.+.-.|..+..+++- +...-.++..++++...
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMVYV 169 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHHHH
Confidence 58999754 5545578888888888888888899999999888888751 22334556666677777
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-----ccccc-cc-CcccchhhHHHHHHHHHHHHHHhc
Q 011638 182 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG-----SLTGI-SI-GTVSETQKIWRSFQALGDIAFAYS 254 (480)
Q Consensus 182 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~-----~~~~~-~~-~~~~~~~~~~~~~~~~~~~~faf~ 254 (480)
....|+...|...+.-+....-..+...+...+. ...+.+- ..+.. +. ....+.....+-.+.++.+.--..
T Consensus 170 v~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 170 VLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKL-GGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 8899999999988876655443322222333332 2111100 00000 00 000111111122333333322223
Q ss_pred ccchhHhhh-hhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 255 YSIILIEIQ-DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 255 ~~~~i~~i~-~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
|..-+|.+. +-..-|+- |+-|+++.++......+|+..-+.|+.+
T Consensus 249 GTAgLPHil~RFfTvp~~--k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 249 GTAGLPHILMRFFTVPDA--KEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccCCCCeEEEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445442 22222222 7889999999999999999988888873
No 90
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.47 E-value=13 Score=37.56 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=43.8
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHH---HHHHHHHHhhhcC
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTY---YTSTLLAACYRSG 94 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~l~~~~~~s~---~s~~~l~~~~~~~ 94 (480)
+++++.|.+|+.+.-+.+.+|+|=++ ..-|..-.|. .++.++-+.+++.. |+=..|..-+|+.
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~ 80 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREK 80 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEE
Confidence 34456799999999999999988654 7777765554 48888877777655 4444454444543
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.31 E-value=2.9 Score=41.69 Aligned_cols=116 Identities=16% Similarity=0.302 Sum_probs=80.4
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHh
Q 011638 61 TAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIAS 140 (480)
Q Consensus 61 f~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~ 140 (480)
.-..|++.++.+.++-..+.+.. ..++......+.+..=..+..++.||+.|+.+...++.+.|.-++++.....
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~ 300 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777776666666665555 2222111111112235778889999999999999999999999999999999
Q ss_pred hhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHH
Q 011638 141 SISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIV 195 (480)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~ 195 (480)
+|..+++++ ..++..|.++++++-+.++... ++++-..|.-
T Consensus 301 aefF~~~~p-------------~~SY~~~v~if~i~sflvan~G-L~~Ii~isvP 341 (431)
T COG1114 301 AEFFSKLVP-------------KLSYKTWVIIFTLISFLVANLG-LEQIIKISVP 341 (431)
T ss_pred HHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 999998887 3556778888888777666543 4444444443
No 92
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=90.58 E-value=2 Score=43.60 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=74.6
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHH
Q 011638 58 AWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYT 137 (480)
Q Consensus 58 P~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~ 137 (480)
-....++|.+.++.+.++-+.+.+.....-... .+..++. .-..+++++.+|+.|..+..+.+.+.|+-++++-.
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g~--~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~ 295 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDINGA--ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLI 295 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCHH--HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666655555555444444332221110 1112222 25788899999999999999999999999999999
Q ss_pred HHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 138 IASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 138 i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
...+|..+++++ ..+++.|.++.+++-+.++...
T Consensus 296 ~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~G 329 (427)
T PF05525_consen 296 SACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANLG 329 (427)
T ss_pred HHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHhC
Confidence 999999999886 3456778888887777666543
No 93
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=89.94 E-value=11 Score=38.45 Aligned_cols=264 Identities=16% Similarity=0.184 Sum_probs=127.2
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc-ccccHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGK-RNYTYVDA 108 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~-~~~~y~~~ 108 (480)
.+|+=++++-+..=....++.+..-+....-+.| |..+++.+.+--.+. ...++-.. +.|. -..+++-.
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~---~~f~~lns-----~~G~~yhIsFpv~ 123 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFT---AIFLVLNS-----RPGSDYHISFPVL 123 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHH---HHHHHHcc-----CCCcccccceeee
Confidence 3555578877776666777777766666666777 344444443322221 11121111 1221 12466766
Q ss_pred HHHhccCccee---ehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCC--CCC-CCCccCCCchh--HHHHHHHHHh
Q 011638 109 VRSNLGGFQVK---ICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSK--GDK-NPCHMNSNPYM--IAFGIVEIVL 180 (480)
Q Consensus 109 ~~~~~G~~~~~---~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~--~~~-~~~~~~~~~~~--ii~~~~~~pl 180 (480)
.+..||-++.. +..++.....+|+. .=+.++....++++..-+.. .++ .........++ +++-++.+|.
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 77777766543 23333333333322 23445555555554321111 000 00011122222 3455555555
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHh-cccchh
Q 011638 181 SQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIIL 259 (480)
Q Consensus 181 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i 259 (480)
.+.| ..+++.+-....+.+.. ...+..++...+.++. +..... ....+.....|..+.++..++=.| ....|.
T Consensus 201 ~~~~-p~~ir~lf~~ka~~t~f---A~~g~LIw~l~kAhG~-G~l~~~-~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 201 YWFP-PYKIRHLFTWKAVLTPF---AAFGFLIWLLKKAHGL-GHLFDS-KSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred eecc-HHHhhhHHHHHHhhhHH---HHHHHHHHHHHhcCCc-cccccC-CCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 5443 55566555555444433 2333444444443331 111100 011334445666666655555444 556777
Q ss_pred HhhhhhcCCCCccchhhhHH--HHHHHHHHHHHHHHHHHHHhhhcCCCC--Cccccccc
Q 011638 260 IEIQDTVKSPPSESKTMKKA--SLISVGVTTLFYMLCGCFGYAAFGDLS--PGNLLTGF 314 (480)
Q Consensus 260 ~~i~~em~~p~~~~~~~~~~--~~~s~~i~~~~Y~~~g~~gy~~fG~~~--~~~il~~~ 314 (480)
|..-+--|+|.. .-.... +-+.+.++.++=++.+..++-.||.+- +-+++.++
T Consensus 275 pDFsRF~ksp~a--~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 275 PDFSRFAKSPNA--IWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred chhHhhcCCCCc--cchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 888888888842 222222 223444555555567778888999973 33455554
No 94
>PLN00150 potassium ion transporter family protein; Provisional
Probab=89.81 E-value=34 Score=37.35 Aligned_cols=118 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhH-----HHHHHHH
Q 011638 172 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKI-----WRSFQAL 246 (480)
Q Consensus 172 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 246 (480)
+..+++..|-.+++...=+.-..++-++.+++.. +.+..++.+.+.+|.- ....+ +.....+ ...+..+
T Consensus 217 is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~ff~~~~~~g~~~L 290 (779)
T PLN00150 217 ISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFS-LALIGCYNIIKWDKSV--FLAFN---PLYIVSFFIRNGRQGWESL 290 (779)
T ss_pred hHHHHHHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHH--HhhcC---HHHHHHHHHhCCCceEEEe
Confidence 4433444443344444444445566666666544 3446677776654321 11110 0000011 1334567
Q ss_pred HHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 247 ~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
|-++.|.+|-..+. ++|-|=. ++--+..+..+..-+++-.-+|-..|+.
T Consensus 291 G~V~L~iTGaEALy---ADlGHFg---~~~Iriaw~~~V~P~LlL~Y~GQaA~ll 339 (779)
T PLN00150 291 GGIVLCMTGTEAMF---ADLGHFT---VKSMQIAFTSLVYPCLLLTYLGQAAYLV 339 (779)
T ss_pred cceeeeecchhhhh---ccccCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 88888888887654 8888775 3333334444444444444455555554
No 95
>PLN00151 potassium transporter; Provisional
Probab=88.88 E-value=40 Score=37.02 Aligned_cols=118 Identities=10% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHH-----HHHHHH
Q 011638 172 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-----RSFQAL 246 (480)
Q Consensus 172 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 246 (480)
+..+++..|-.+++...=+.-..++-++.+++.. +.++.++.+.+.+|.- ....+ +.....++ ..+..+
T Consensus 277 Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~-i~~iGiynI~~~~p~V--l~Aln---P~Y~~~Ff~~~~~~gw~~L 350 (852)
T PLN00151 277 ISVAFLVILFSVQRFGTSKVGFAFGPALALWFCS-LGGIGIYNLVKYDSSV--FRAFN---PVYIYYFFKRNSTKAWSAL 350 (852)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHH--HhhhC---HHHHHHHHHhCCCceEEEe
Confidence 3333333343334443334444556666555444 3446677776654321 11100 00000111 333557
Q ss_pred HHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 247 ~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
|-++.|.+|...+. ++|-|=. ++--+..+..+..-+++-.-+|-..|+.
T Consensus 351 GgVvLciTGaEALf---ADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~ 399 (852)
T PLN00151 351 GGCVLCATGSEAMF---ADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLM 399 (852)
T ss_pred cceeeeeccchhhh---cccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 88888888887654 8887765 3333444444444444444455555654
No 96
>PLN00148 potassium transporter; Provisional
Probab=82.33 E-value=83 Score=34.53 Aligned_cols=120 Identities=9% Similarity=0.053 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhH-----HHHHH
Q 011638 170 MIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKI-----WRSFQ 244 (480)
Q Consensus 170 ~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 244 (480)
..+..+++..|-.+++...=+.-..++-++.+++.. +....++.+.+.+|.- ....+ +.....+ ...+.
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~ff~~~~~~g~~ 271 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLS-IGSIGLYNIIHWNPKI--IHALS---PYYIIKFFRVTGKDGWI 271 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHH-HHHHHHHHHHhcCHHH--hhhcC---HHHHHHHHHhCCCceEE
Confidence 334444444444344444444445566666666544 3446677776654421 11110 0000011 13345
Q ss_pred HHHHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 245 ALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 245 ~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
.+|-++.|.+|-..+. ++|-|=. ++--+..+..+..-+++---+|-..|+.
T Consensus 272 ~LGgV~L~iTGaEALy---ADlGHFg---~~~Iriaw~~~V~P~L~L~Y~GQaA~ll 322 (785)
T PLN00148 272 SLGGILLSITGTEAMF---ADLGHFT---AASIRLAFATVIYPCLVVQYMGQAAFLS 322 (785)
T ss_pred eecchheeccchhhhh---hhccCCC---ccceEEeeeehHHHHHHHHHcchHHHHh
Confidence 6788888888887654 8888765 2333333333333344433345555554
No 97
>PLN00149 potassium transporter; Provisional
Probab=79.37 E-value=1e+02 Score=33.81 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=61.3
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhH-----HHHHHHH
Q 011638 172 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKI-----WRSFQAL 246 (480)
Q Consensus 172 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 246 (480)
+..+++..|-.+++...=+.-..++-++.+++.. +.+..++.+.+.+|.- ....+ +.....+ ...+..+
T Consensus 201 is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~f~~~~~~~g~~~L 274 (779)
T PLN00149 201 VACIILIGLFALQHYGTHRVGFLFAPVVLTWLLC-ISAIGVYNIFHWNPHV--YQALS---PYYMYKFLKKTQRGGWMSL 274 (779)
T ss_pred HHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHH-HHHHHHHHHHhcCHhH--hhhcC---HHHHHHHHHHCCCceeEee
Confidence 3333333333334444434445566666666544 4446677777654421 11110 0000111 1344567
Q ss_pred HHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 247 ~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
|-++.|.+|-..+. ++|-|=. ++--+..+..+..-+++-.-+|-..|+.--
T Consensus 275 GgV~L~iTG~EALy---ADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~ 325 (779)
T PLN00149 275 GGILLCITGSEAMF---ADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLSKH 325 (779)
T ss_pred cchhhcccchhhhh---hcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHhcC
Confidence 88889999887665 8888775 333344444444444444445666666533
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=77.84 E-value=22 Score=36.29 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHH
Q 011638 61 TAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGD-PVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIA 139 (480)
Q Consensus 61 f~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~-~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~ 139 (480)
..++|.+.++.+.++-+.+.+....-- ...+ .+++. .=.....++.+|++++.+..+.+.+.|+-++++-...
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~----~~~~~~~~g~--~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a 301 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSA----SLVDQSANGA--AILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCA 301 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccCCCcHh--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666555555555443111 1011 11121 2455667888999999999999999999999999999
Q ss_pred hhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCC
Q 011638 140 SSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 184 (480)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (480)
.+|.+++.++ .+++.|.++..++.++++...
T Consensus 302 ~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 302 CAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH
Confidence 9999887653 345677778888888777643
No 99
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=63.55 E-value=1.5e+02 Score=31.03 Aligned_cols=46 Identities=24% Similarity=0.136 Sum_probs=41.2
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 149 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (480)
...++-..+.||++...+..++.+..+..+++-++..++....+..
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6788888899999999999999999999999999999988877765
No 100
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=63.04 E-value=1.8e+02 Score=29.60 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHH--HHHHHHhhhhhhhchHHHHH
Q 011638 274 KTMKKASLISVGVTTLF-YMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAI--VIHLVGAYQVFCQPLFAFIE 350 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~-Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~--~i~~~~s~pl~~~p~~~~~~ 350 (480)
++.++.+..+..+.... .++....++..|+. ..++...+.-.+.++.-. +..... ......++|...++.+....
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQNIS-LLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCchHH-HHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 56666455555555555 56788899999996 666666665434444444 333332 33344788888888887766
Q ss_pred HHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011638 351 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYI 429 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~Ga~~~~~l~~ilP~~~~l 429 (480)
..+.--..-.|..++. . ++.+.+..|..........+.+.+...|. +....+..|++.....+-++|.++++
T Consensus 299 SFlgv~lg~~~~~~~~--~-----~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 299 SFLGVYLGLFEGLADL--F-----KKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHhCchhhHHHhhhHH--H-----HhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 5433211110011110 0 11122233444455555666667777775 78888889988889999999999998
Q ss_pred HHhCC
Q 011638 430 AQKKI 434 (480)
Q Consensus 430 ~~~~~ 434 (480)
+-++.
T Consensus 372 ~p~~~ 376 (415)
T COG0814 372 KPRKL 376 (415)
T ss_pred HHHHh
Confidence 86543
No 101
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=62.26 E-value=2.1e+02 Score=30.11 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 37 TLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPS----VMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii----~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
+..+-+...++..+|-| +.-.|+-..+-|-..-++ .+++++.=..+.=..+.+..++.. ...|.+++-.
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~------~~~~~~~~p~ 79 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGP------IGAWKRLCPI 79 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS------HHHS-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence 45567788889999987 788999987665332333 223333333333334444333211 1245555543
Q ss_pred hccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Q 011638 112 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS 150 (480)
Q Consensus 112 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~ 150 (480)
.-| +++...+..+..++-|.+..+..+..+..+
T Consensus 80 ~~g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s 112 (523)
T PF00209_consen 80 FKG------IGYAMVLISFLIAIYYSVIVAWALYYFFQS 112 (523)
T ss_dssp HHT------HHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccc------cccccccccccccccccccccccccccccc
Confidence 222 455555555666666777666666555543
No 102
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=56.85 E-value=81 Score=33.45 Aligned_cols=247 Identities=15% Similarity=0.094 Sum_probs=111.4
Q ss_pred ccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
..|++.|+.....+..+.+|++. +++|.--.+.|.-...... .......++.... .+...+....+-.|.-+
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~-----~~l~~~~~~~~~f--~Pvf~~~~v~~~~eYl~ 115 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEW-----NALLSVLLLGWIF--IPVFYRLGVTTMYEYLE 115 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHH-----HHHHHHHhhheEE--EEEEEecCeeehhHHHH
Confidence 35677888888899988888664 6777766666543222111 1111222222111 00000011224455555
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
+-||+..+.+..+...++.+.-...++-.-+-.+++..+ ++.....++..+++.-......++..-
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~GGlkaVi 181 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTALGGLKAVI 181 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHhcCeeEEE
Confidence 557777555555544444333332222222222222222 111122233444444455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hhhcCCCCCcccc---cccCcccchhhHHHHHHH-HHHHHHHhcccchhH
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAK------VAETGKFRGSLTG---ISIGTVSETQKIWRSFQA-LGDIAFAYSYSIILI 260 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~faf~~~~~i~ 260 (480)
+.=.+..+.++.-...++.....+ ..+....++.... ...+ ++-....|..+.. ...-.--|..+++..
T Consensus 182 ~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~d-p~vr~t~W~~~~Gg~~~~l~~~~vnQ~~V 260 (585)
T KOG2349|consen 182 WTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRD-PTVRHTPWSLLFGGTIMWLSYYGVNQLIV 260 (585)
T ss_pred EhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCC-CcccccchhHhcCCcHHHHHHHhhhHHHH
Confidence 665555554443222222111111 1111111111111 1111 2223345665533 344444556677666
Q ss_pred hhhhhcCCCCccchhhhHHHHHHHHHHHHHHHH---HHHHHhhhcCC
Q 011638 261 EIQDTVKSPPSESKTMKKASLISVGVTTLFYML---CGCFGYAAFGD 304 (480)
Q Consensus 261 ~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~---~g~~gy~~fG~ 304 (480)
.=+-.+|+- |+.++.+.......++...+ .|+.-|..|-|
T Consensus 261 QR~lsl~sl----k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 261 QRYLSLPSL----KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred hHHhccccH----HHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 555555544 77888877666655555444 45555555543
No 103
>PHA02764 hypothetical protein; Provisional
Probab=52.56 E-value=2.3e+02 Score=27.64 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred cccccchHHHHHH-HHHhhhhhhhhhHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 011638 31 RLKRTGTLWTASA-HIITAVIGSGVLSLAWATAQL--GWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 107 (480)
Q Consensus 31 ~~~~~~s~~~~~~-~l~~~~iG~GiL~lP~af~~~--G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~ 107 (480)
..-|..+.+.+++ |+.+...|.++ +.|+-++.. |.. .....++.++++...+....+...+.+ ++|.. +.|
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmP-rAGGd-YVY-- 82 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFP-LNGGD-YAY-- 82 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCce-EEE--
Confidence 4556677887777 66665555544 556644433 333 334445556666666666666555543 34442 344
Q ss_pred HHHHhccCcceeehhHHHHHHHHH
Q 011638 108 AVRSNLGGFQVKICGLVQYLNLFG 131 (480)
Q Consensus 108 ~~~~~~G~~~~~~~~~~~~~~~~g 131 (480)
.++++||+.+.+..+..++....
T Consensus 83 -ISRAFGP~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 83 -IRTAFSSKFYTIFGISLWLTYVL 105 (399)
T ss_pred -hHHhhCccHHHHHHHHHHHHHHh
Confidence 34669998888888777755443
No 104
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=51.24 E-value=3.6e+02 Score=29.42 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhh-----HHHHHHHH
Q 011638 172 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQK-----IWRSFQAL 246 (480)
Q Consensus 172 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 246 (480)
+..+++..|-.+++...-+.-..+|-++.+++..+ ....++.+.+.+|. -....+ +..... -+..+..+
T Consensus 171 it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l-~~~Gi~~I~~~~P~--Vl~Aln---P~ya~~f~~~~~~~~~~~L 244 (688)
T TIGR00794 171 ISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLL-AGIGIYNIVKFNPE--VLKALS---PYYAVQFFIEYGTVGWVSL 244 (688)
T ss_pred HHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHH-HHHHHHHHHhcCHH--HHhHhC---HHHHHHHHHHCCCceeeec
Confidence 44444444444444444445556677776665543 34566776662331 111110 000001 11344567
Q ss_pred HHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301 (480)
Q Consensus 247 ~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 301 (480)
|.++.|.+|-..+ +++|-|=. |+--+..+..+..-+++---+|-..|+.
T Consensus 245 G~V~L~iTGaEAL---yADmGHFg---~~~Ir~aw~~~V~P~L~LnY~GQgA~ll 293 (688)
T TIGR00794 245 GGVVLSITGVEAM---FADLGHFG---KLPIQLAWFTFVYPSLILCYIGQAAYLS 293 (688)
T ss_pred cchhheeccHhhh---hcccCCCC---cccceeehHHHHHHHHHHHHcchHHHHh
Confidence 8888888888665 58888775 3333334444444444433345445554
No 105
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=51.23 E-value=1.9e+02 Score=27.26 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=29.0
Q ss_pred HhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011638 260 IEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 304 (480)
Q Consensus 260 ~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 304 (480)
..-.+.+++| ++++.+.+...+..++|...-..+...+++
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667776 589999999999999888775555555554
No 106
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=47.48 E-value=3.3e+02 Score=27.88 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=57.6
Q ss_pred chHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCcccccHHHHHHHhc
Q 011638 36 GTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACY-RSGDPVTGKRNYTYVDAVRSNL 113 (480)
Q Consensus 36 ~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~-~~~~~~~~~~~~~y~~~~~~~~ 113 (480)
.|-..-+....++.+|-| +.-.||...+-|-..-++..++..++-.+- .++.|-. -+....+. ..+|+.+..
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiP-lli~Ef~iGr~~~~~~--~~a~~~l~~--- 82 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIP-LLLAEFAIGRRGRKNA--VGAFRKLAP--- 82 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHH-HHHHHHHhhhhcCCCh--hHHHHHhcc---
Confidence 355566777788899866 577899988877653333333333322232 2333322 11111111 226766664
Q ss_pred cCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 011638 114 GGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 149 (480)
Q Consensus 114 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (480)
++....+.+......+..+.-|.+..|=.+..+..
T Consensus 83 -~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~ 117 (439)
T COG0733 83 -KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVK 117 (439)
T ss_pred -CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666667777777665555544
No 107
>PRK11281 hypothetical protein; Provisional
Probab=47.45 E-value=2.8e+02 Score=32.29 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGD 304 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 304 (480)
.+-++++.++...+....+.+..+||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888888889999987764
No 108
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=47.39 E-value=3.2e+02 Score=27.63 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=54.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceee
Q 011638 43 AHIITAVIGSGVLSLAWATAQLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKI 120 (480)
Q Consensus 43 ~~l~~~~iG~GiL~lP~af~~~G--~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 120 (480)
+....+-+|.|-++ ...+.| +....++.++.+.+..+...-+.- | .--.+|+ +..|..++.++|+.++.
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aa--R-lg~vTg~---~l~~~~r~~~~~~~~~~ 81 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCA--R-LGVVTGL---DLAEVCREHYPKVPRIT 81 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH--H-heeecCC---CHHHHHHHHCCCchHHH
Confidence 44445556777666 223444 334445555555555444444432 2 1113333 79999999999877766
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 011638 121 CGLVQYLNLFGVAIGYTIASSISMMAIE 148 (480)
Q Consensus 121 ~~~~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (480)
.-+...+...+...+-+.-.+.-++.++
T Consensus 82 ~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 82 LWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555566665555555555554
No 109
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=45.76 E-value=3.4e+02 Score=27.55 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHh-hC--hhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQ-LG--WIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 112 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~-~G--~~~gii~l~~~~~~s~-~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (480)
..+..-+.+..-..|+|=+-.|-...+ .| +..+...+++.++.-= .+...+.+. |+ ++++++++.
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~--------g~---~~~~l~~~i 74 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALY--------GG---GVESLATRI 74 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhcc--------CC---CHHHHhhhc
Confidence 456677788888999998888877653 33 5666666666555322 222222221 11 789998885
Q ss_pred ccCcceeehhH
Q 011638 113 LGGFQVKICGL 123 (480)
Q Consensus 113 ~G~~~~~~~~~ 123 (480)
||+.+.+...
T Consensus 75 -~~~fg~~f~~ 84 (431)
T COG1114 75 -GPWFGVLFAI 84 (431)
T ss_pred -cchHHHHHHH
Confidence 7766544443
No 110
>PRK09950 putative transporter; Provisional
Probab=43.11 E-value=4.2e+02 Score=27.83 Aligned_cols=155 Identities=8% Similarity=0.051 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhh
Q 011638 66 WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMM 145 (480)
Q Consensus 66 ~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 145 (480)
.++...+++..+++..++.++.............+. +.++.....+...- ..-.........+..+++...|...
T Consensus 350 ~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~--~~~~a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s 424 (506)
T PRK09950 350 LGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTL--GGETAVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVA 424 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHcc--CcchHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HhhhhhcccCC-CCCCCCccCCCchhHHHHHHHHHhhCCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 011638 146 AIERSNCFHSK-GDKNPCHMNSNPYMIAFGIVEIVLSQIPD-FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG 223 (480)
Q Consensus 146 ~l~~~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~pl~~~~~-l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~ 223 (480)
..+.....+.. +++++..+.+..|.++.+++...|..... ++.++..+.++ ..-+....+.+.....|..++++.|.
T Consensus 425 ~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~-alP~~~i~~l~~~s~~k~l~~d~~~~ 503 (506)
T PRK09950 425 YTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLT-ALPFLVILLIKVYGFIRWLKQDYADV 503 (506)
T ss_pred HHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhcC
Q ss_pred ccc
Q 011638 224 SLT 226 (480)
Q Consensus 224 ~~~ 226 (480)
+..
T Consensus 504 ~~~ 506 (506)
T PRK09950 504 PAH 506 (506)
T ss_pred CCC
No 111
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.95 E-value=31 Score=22.82 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011638 276 MKKASLISVGVTTLFYMLCGCFGYAAFGDL 305 (480)
Q Consensus 276 ~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 305 (480)
+..+..+++.+.+++..+.|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 445566777788888888888888899974
No 112
>PRK09928 choline transport protein BetT; Provisional
Probab=39.76 E-value=4.5e+02 Score=28.66 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhhhhHhhhhhcccCC-CCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 011638 130 FGVAIGYTIASSISMMAIERSNCFHSK-GDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVM 199 (480)
Q Consensus 130 ~g~~i~y~i~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~ 199 (480)
...+..+.+..+|.....+.....+.. +..++..+.+..|.++.+++...|.....++.++..+.++.+=
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alP 486 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLP 486 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344566888888988888876654432 1223445677888888888777777777898888888777554
No 113
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.40 E-value=3.9e+02 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTG 313 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~ 313 (480)
.+-++++..+...+...-..+...||.......++++...
T Consensus 44 ~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~ 83 (340)
T PF12794_consen 44 SHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVA 83 (340)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 6678899999999999999999999998876555555443
No 114
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=38.36 E-value=86 Score=28.09 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=43.2
Q ss_pred hHHHHHHhhhhhhhhhHhhhhHHHHHHHhCCCC----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011638 404 FNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK----------WSTKWLCLQILSVACLIITIAAAAGSIAGVVT 468 (480)
Q Consensus 404 ~~~v~~l~Ga~~~~~l~~ilP~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~ 468 (480)
++.-.-+.|++.++-+..++|+...+..++++. .+.+.....+...+|++-++++..-|..++.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555678888899999999999999887632 12222334444556666666677777766665
No 115
>TIGR00909 2A0306 amino acid transporter.
Probab=37.04 E-value=2.9e+02 Score=27.99 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=40.3
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS 150 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~ 150 (480)
...++.++..|+++..++.+...+.++++..+.+...++.+..+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677778888888889999999999999999999999999877753
No 116
>PRK12768 CysZ-like protein; Reviewed
Probab=37.04 E-value=3.4e+02 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.5
Q ss_pred hhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 011638 262 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG 295 (480)
Q Consensus 262 i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g 295 (480)
-.+++.+| ++++++..+.+.+..++....
T Consensus 8 a~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 8 ALARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 35677776 589999999998888887764
No 117
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.02 E-value=3e+02 Score=24.46 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=25.3
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011638 61 TAQLGWIAGPSVMFLFSFVTYYTSTLLAACYR 92 (480)
Q Consensus 61 f~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~ 92 (480)
|..---..|+|.+++.++...++++++.+-..
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y~y 149 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYYAY 149 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44445668999999999999999999987544
No 118
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=36.59 E-value=1.6e+02 Score=30.78 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH
Q 011638 125 QYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYS 204 (480)
Q Consensus 125 ~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 204 (480)
..+.....+..+.+...|....++....-.. ..++..+.+..|.++.+++...+.....++.++..+.+... -+...
T Consensus 407 ~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~--~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al-PF~~v 483 (537)
T COG1292 407 TSLLALLVIAIFFVTSADSGSYVLAMISSRG--GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL-PFSLV 483 (537)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cHHHH
Confidence 3344455667788889999888887543222 23333556677888777776666667778888887776533 23322
Q ss_pred HHHHHHHHHHhhh
Q 011638 205 TIGLGLGIAKVAE 217 (480)
Q Consensus 205 ~i~~~~~i~~~~~ 217 (480)
.+++....+|...
T Consensus 484 ll~~~~sl~k~l~ 496 (537)
T COG1292 484 LLVMMFSLIKDLK 496 (537)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555443
No 119
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=35.78 E-value=2.1e+02 Score=30.94 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhccC
Q 011638 38 LWTASAHIITAVIGSGVLSLAWAT--AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGG 115 (480)
Q Consensus 38 ~~~~~~~l~~~~iG~GiL~lP~af--~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~ 115 (480)
|+-....++. ...++......+ .+..+...++.+++..+++..+.++..+.-..+. .....+.+..+|-
T Consensus 357 ww~~~~~~~~--~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~-------~~~~~~sqli~g~ 427 (624)
T PF03169_consen 357 WWYLAGLVVS--FVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPV-------SGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHHHH--HHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcc-------hhhhHHHHHHHHH
Confidence 4434444433 334566777888 4566766777777777777777777777544211 2566666666654
No 120
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=34.64 E-value=39 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011638 280 SLISVGVTTLFYMLCGCFGYAAFGDL 305 (480)
Q Consensus 280 ~~~s~~i~~~~Y~~~g~~gy~~fG~~ 305 (480)
...+..+.+++-.+.|..-|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 45566777788888888888899963
No 121
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=33.27 E-value=4e+02 Score=24.75 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcccchhHhhhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCc
Q 011638 241 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY 320 (480)
Q Consensus 241 ~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~ 320 (480)
|....+-++-|-|. |+...=+++--++-+ |+.+|.+-...=++.+.-.++|+..-..+-+...-.-+. +..+
T Consensus 56 nlHP~lMviGfI~l-~GeAiL~YR~~r~~~---k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~Nfy----SLHS 127 (245)
T KOG1619|consen 56 NLHPVLMVIGFIYL-QGEAILIYRVFRYTS---KKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFY----SLHS 127 (245)
T ss_pred CcchHHHHHHHHHh-ccceeeeeehhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccee----eHHH
Confidence 44444444445554 444444566655554 889999999999999999999999988888766622222 2468
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 321 WLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 321 ~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
|+...+-.++..+-...|--++.|.
T Consensus 128 WlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 128 WLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9888888888888888886665544
No 122
>CHL00020 psbN photosystem II protein N
Probab=32.64 E-value=33 Score=22.35 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011638 279 ASLISVGVTTLFYMLCGCFGYAAFGDL 305 (480)
Q Consensus 279 ~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 305 (480)
+...++.+.+++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 355667777777777888888899974
No 123
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=31.81 E-value=2.9e+02 Score=23.77 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
|+.+|.+-...=...++-.++|+..-..+-++.+-.-+. +.-+|+....-+++.++.+..+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fy----SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMY----SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccc----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 567777888878888888888888777776543322222 24589998899999999999998887775
No 124
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=30.51 E-value=6.7e+02 Score=26.50 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhh-----HHHHHHHHHHHHHHhcccchhHhhhhh
Q 011638 191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQK-----IWRSFQALGDIAFAYSYSIILIEIQDT 265 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~faf~~~~~i~~i~~e 265 (480)
.-..++-++.+++..+. .+.++...++ |. -....+ +....+ -+..+..+|.++.|.+|-..+. ++
T Consensus 154 ig~~FgPim~~WF~~l~-~~G~~~I~~~-p~--Vl~A~n---P~yai~f~~~~~~~~~~~LG~V~L~~TGaEALy---AD 223 (534)
T PF02705_consen 154 IGKLFGPIMLLWFLTLG-VLGLYNIIQH-PE--VLKALN---PYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALY---AD 223 (534)
T ss_pred HHHHHhHHHHHHHHHHH-HHHHHHHhhC-HH--HHHHhC---HHHHHHHHHHcCCchhhhcchHHHHHhhHHHHH---hh
Confidence 33447777776655433 4566776655 31 111100 000111 1245677888889998887665 78
Q ss_pred cCCCC
Q 011638 266 VKSPP 270 (480)
Q Consensus 266 m~~p~ 270 (480)
|-|=.
T Consensus 224 mGHfg 228 (534)
T PF02705_consen 224 MGHFG 228 (534)
T ss_pred hcccc
Confidence 88775
No 125
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=29.21 E-value=4.8e+02 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=42.2
Q ss_pred HHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhh
Q 011638 105 YVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSN 151 (480)
Q Consensus 105 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~ 151 (480)
...+.+...|++...++.+...+.++++..+.+...++.+..+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 306 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDG 306 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccccccc
Confidence 66888888889999999999999999999999999999998888754
No 126
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=28.37 E-value=6.8e+02 Score=25.87 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhccc-CCCCCCCCccCCCchhHHHHHHHHHhhCCCC-cchhhHHHHHHHHHH
Q 011638 128 NLFGVAIGYTIASSISMMAIERSNCFH-SKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD-FDQLWWLSIVAAVMS 200 (480)
Q Consensus 128 ~~~g~~i~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~-l~~l~~~s~~~~~~~ 200 (480)
.....+..|++...|.....+...+-+ ...++++..+.+..|.++.+.+...|..... ++.++..+.++.+=.
T Consensus 361 l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~alP~ 435 (453)
T TIGR00842 361 LALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAALPF 435 (453)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455668888888888777755332 2222234456677888877766666666656 888888887775543
No 127
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=26.33 E-value=4.9e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=51.9
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchh
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (480)
+..+|.++.+++.+++.+..|.+.+++....-+++..++++. .....+-+++ ++..++....+++.+
T Consensus 300 ~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~------------~~~~~~ri~~-i~~~~~G~~~~~~~v 366 (416)
T PF01235_consen 300 STVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGK------------KAIWIYRILF-IAMVFIGAVIDLDLV 366 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------eEEEeeeehh-hhhhhhhhcccchhH
Confidence 344677889999999999999999999999999998887321 0011222222 223334444566666
Q ss_pred hHHHHHHHHHHHH
Q 011638 190 WWLSIVAAVMSFT 202 (480)
Q Consensus 190 ~~~s~~~~~~~~~ 202 (480)
-.++=+.+.++..
T Consensus 367 W~~~Di~~~lmai 379 (416)
T PF01235_consen 367 WDLADIANGLMAI 379 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 128
>PLN02680 carbon-monoxide oxygenase
Probab=25.98 E-value=5.4e+02 Score=23.88 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
|+.+|.+-...=...++..++|+.....+-++. ++. |+- +..+|+....-+++.++.+..+..+..|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~-nfy-SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GID-NFY-SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Ccc-ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 667788888888888888888887755555543 222 221 24589988888889999988887766654
No 129
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.81 E-value=1.5e+02 Score=27.41 Aligned_cols=70 Identities=11% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHh---------hhhhhhhhHhhhhHHHHHHHhCC-CCc--ch--hHHHHHHHHHHHH
Q 011638 387 RTIFVILTTVISMLLPFFNDVVGLL---------GALGFWPLTVYFPVEMYIAQKKI-PKW--ST--KWLCLQILSVACL 452 (480)
Q Consensus 387 ~~~~~~~~~~ia~~~p~~~~v~~l~---------Ga~~~~~l~~ilP~~~~l~~~~~-~~~--~~--~~~~~~~~~~~~~ 452 (480)
+-+.....+++|..++.++-++..+ ||.++.-++++= |..+.+. .+. .. ..|+.|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3444455566666666665555543 666666665553 3222221 111 11 1234556677787
Q ss_pred HHHHHHHH
Q 011638 453 IITIAAAA 460 (480)
Q Consensus 453 ~~~v~g~~ 460 (480)
++.+-+++
T Consensus 235 ll~lr~~i 242 (262)
T KOG4812|consen 235 LLFLRGFI 242 (262)
T ss_pred HHHHHHHH
Confidence 77776665
No 130
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=23.27 E-value=8.3e+02 Score=25.13 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=43.7
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHH---HHHHHHHHhhhcCCC
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTY---YTSTLLAACYRSGDP 96 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~l~~~~~~s~---~s~~~l~~~~~~~~~ 96 (480)
.++..|.+++.+.-+.+.+|+|=++ ..-|.+-.|. .++.++=+.+++.. |.=..|...+|..|+
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~ 126 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDK 126 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC
Confidence 4445689999999999999998655 7777765554 47777766665544 444555555565443
No 131
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.00 E-value=4.7e+02 Score=22.17 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 274 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
|+..|.+-...-...++-.++|+..-..+-++.+ + .++. +.-+|+.....+++..+.+..+..+..|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~--~-~hf~-SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQANG--Y-PDMY-SLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-Cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566778888888888888888877666655432 2 2221 24589998899999999999988877764
No 132
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.70 E-value=4.4e+02 Score=21.41 Aligned_cols=66 Identities=9% Similarity=0.205 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhh---ChhHHHHHHHHHHHHH----HHHHHHHHHhhhcCCCCCCcccccHHHH
Q 011638 37 TLWTASAHIITAVIGSGVLSLAWATAQL---GWIAGPSVMFLFSFVT----YYTSTLLAACYRSGDPVTGKRNYTYVDA 108 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~GiL~lP~af~~~---G~~~gii~l~~~~~~s----~~s~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (480)
.|.+....+.=.++|+..+.+....... |-..-...+++.|+++ .|-.+++..+++.. +-++|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~------~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGY------KGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCC------CCCCHhhC
Confidence 3555555555556666666665444322 1111122233333333 37777777776642 23577765
No 133
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=4.7e+02 Score=21.50 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACY 91 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~ 91 (480)
++||=-.|-.+..++ +-+|.+++.... +.|-+.|.+..++.-++..|+..+-.+-.
T Consensus 31 nERTfl~wl~~~vll-g~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa 86 (126)
T COG5264 31 NERTFLSWLSVTVLL-GGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRA 86 (126)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455443332333333 456777777666 78888788888777778888877766533
No 134
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=20.35 E-value=1e+03 Score=25.03 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhhhhHhhhhhcccCC-CCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 011638 130 FGVAIGYTIASSISMMAIERSNCFHSK-GDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVM 199 (480)
Q Consensus 130 ~g~~i~y~i~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~ 199 (480)
...+..+.+...|.....+....-+.. +.+++..+.+..|.++.+.+...|.....++.++..+.++.+=
T Consensus 412 ~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~alP 482 (504)
T PRK03356 412 FILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCP 482 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344566778888887777766544332 1223335567778887777766666667788888887776544
No 135
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.16 E-value=5.8e+02 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=15.1
Q ss_pred CCCCcchhhHHHHHHHHHHHH
Q 011638 182 QIPDFDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 182 ~~~~l~~l~~~s~~~~~~~~~ 202 (480)
.+|.+.++.+=.++..+|...
T Consensus 122 ~~~~~~~l~~nTiiT~~Ciyi 142 (173)
T PF11085_consen 122 MIKPVTELDWNTIITTLCIYI 142 (173)
T ss_pred CChhhhhCchhHHHHHHHHHH
Confidence 356777777777888887764
Done!