Query 011638
Match_columns 480
No_of_seqs 135 out of 1515
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 6.7E-17 2.3E-21 164.9 29.6 366 31-436 5-380 (445)
2 3gia_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 139.9 28.6 354 32-434 4-368 (444)
3 4djk_A Probable glutamate/gamm 99.5 7E-12 2.4E-16 130.0 28.7 289 29-343 6-310 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 2E-05 6.8E-10 80.8 27.7 248 31-303 22-279 (501)
5 3dh4_A Sodium/glucose cotransp 98.1 0.0069 2.4E-07 62.4 32.3 152 33-205 19-172 (530)
6 2xq2_A Sodium/glucose cotransp 97.6 0.067 2.3E-06 55.8 30.4 151 33-204 48-200 (593)
7 2a65_A Leutaa, Na(+):neurotran 67.9 1.1E+02 0.0036 30.9 31.4 108 37-151 10-123 (519)
8 3l1l_A Arginine/agmatine antip 35.6 3E+02 0.01 26.3 14.1 48 103-150 260-307 (445)
9 3gia_A Uncharacterized protein 31.5 1.8E+02 0.0061 28.0 9.3 48 104-151 259-306 (444)
10 4ain_A Glycine betaine transpo 27.4 4E+02 0.014 26.8 10.8 169 28-210 88-283 (539)
11 2wsw_A BCCT family betaine/car 20.9 2.2E+02 0.0075 28.4 7.4 98 124-222 411-509 (509)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.79 E-value=6.7e-17 Score=164.88 Aligned_cols=366 Identities=12% Similarity=-0.017 Sum_probs=214.5
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
+++|+.+.++.+...+++++|+|++.+|....+.|.. +++..++.+++.......+.|..++.+. .| +..+..+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHH
Confidence 4567889999999999999999999999998888864 7888888888888888888887766543 22 5667778
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l 189 (480)
+.+||+.+++..+..++........+....++.+..+++... . .+ ..+.+ +..+++.-+...+..|..
T Consensus 79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------D--PW--VLTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------S--HH--HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------c--cH--HHHHHHHHHHHHHHHHHHhchHHH
Confidence 899999999999999988888888888888887765554210 0 00 11111 112222222333555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 269 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 269 (480)
..+..+.....+...++ ..+......++... .+. +. .....+..++..++...+|+|.|........+|+|||
T Consensus 148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p 220 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVG---IAVFGWFWFRGETY-MAA--WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHTTSTTCCCCCC-CCC--------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhChhhc-ccc--cC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence 55554444333322111 11111111111100 011 10 0111124477788999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc----cccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638 270 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN----LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 345 (480)
Q Consensus 270 ~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~----il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 345 (480)
+ |+.+|++..+..++.++|++.........+.+...+ ...-......++...+..+...+....+..-.+...
T Consensus 221 ~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (445)
T 3l1l_A 221 K---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLA 297 (445)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999888777776543211 111000011234444555556666555554444444
Q ss_pred HHHHHHHhcc-cCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhc----cchHHHHHHhhhhhhhhhH
Q 011638 346 FAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLL----PFFNDVVGLLGALGFWPLT 420 (480)
Q Consensus 346 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~----p~~~~v~~l~Ga~~~~~l~ 420 (480)
.+.+...-.+ ..| +. ..+.++.+.| .+-++....+.....+.... ..++.+.++.+ ....+.
T Consensus 298 sR~~~~~a~dg~lP-~~-~~~~~~~~~P---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 364 (445)
T 3l1l_A 298 GQTAKAAADDGLFP-PI-FARVNKAGTP---------VAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVP 364 (445)
T ss_dssp HHHHHHHHHTTSSC-GG-GGCCCTTCCC---------HHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHhCCCCc-HH-HHhcCCCCCC---------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHH
Confidence 4444443322 222 11 1211111122 22222222211111111112 23566666654 345788
Q ss_pred hhhhHHHHHHHhCCCC
Q 011638 421 VYFPVEMYIAQKKIPK 436 (480)
Q Consensus 421 ~ilP~~~~l~~~~~~~ 436 (480)
|.++.+.+++.+++++
T Consensus 365 y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 365 YLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999999888776544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.63 E-value=1.5e-13 Score=139.90 Aligned_cols=354 Identities=9% Similarity=0.026 Sum_probs=205.6
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638 32 LKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 32 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (480)
++|+.+.++.+...+++++|+|++..|. +....|. .+++..++.+++.......+.|...+.+. .| +..+..+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~G----g~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NA----GPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TT----THHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC----cHHHhHH
Confidence 5678899999999999999999998764 4456676 68888889999999999999997776543 22 4667788
Q ss_pred HhccCcc-eeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH---HHHHHHHHhhCCCCc
Q 011638 111 SNLGGFQ-VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI---AFGIVEIVLSQIPDF 186 (480)
Q Consensus 111 ~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i---i~~~~~~pl~~~~~l 186 (480)
+.+||+. ...+.+..++........+....++.+..+++. ....++.. +..++++-+...+..
T Consensus 78 ~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~g~ 144 (444)
T 3gia_A 78 KAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFFGS 144 (444)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899962 223356666666667777777778877766541 01122221 122222223334555
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhc
Q 011638 187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 266 (480)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 266 (480)
|....+........+...++.+...+.+. ++.+ .. +...+.+..+++.++...+|+|.|...+....+|+
T Consensus 145 ~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~-----~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~ 214 (444)
T 3gia_A 145 KAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VI-----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI 214 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TS-----CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cC-----CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 55555555444433332222222222221 1111 10 01112334567788888999999999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----cccccc-cccCCCchHHHHHHHHHHHHHHHhhhhh
Q 011638 267 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP----GNLLTG-FGFYNPYWLLDIANAAIVIHLVGAYQVF 341 (480)
Q Consensus 267 ~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~il~~-~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 341 (480)
|||+ |+.+|++..+..++.++|.+..+......+.+.- ++.+.. ......++...+..+...+....+..-.
T Consensus 215 k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 291 (444)
T 3gia_A 215 ENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNAT 291 (444)
T ss_dssp SSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 7899999999999999999988776665553210 100000 0000012333345555555555555444
Q ss_pred hhchHHHHHHHhcc-cCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhH
Q 011638 342 CQPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLT 420 (480)
Q Consensus 342 ~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~ 420 (480)
+...-+.+.....+ ..|+ .+ .+.++ +.| ....+.. .+++.+++.. .+++.+.++.+. +..+.
T Consensus 292 ~~~~sR~l~a~a~dg~lP~-~f-~~~~~-~~P--------~~a~~~~---~~~~~~~~~~-~~~~~l~~~~~~--~~~~~ 354 (444)
T 3gia_A 292 IYGGANVAYSLAKDGELPE-FF-ERKVW-FKS--------TEGLYIT---SALGVLFALL-FNMEGVASITSA--VFMVI 354 (444)
T ss_dssp HTTTHHHHHHHHHHSSCCS-SC-CTTSC-CSC--------THHHHHH---HHHHHHHHHH-SCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHCCCCCH-HH-hCCCC-CCC--------cHHHHHH---HHHHHHHHHH-cCHHHHHHHHHH--HHHHH
Confidence 44444444443322 2221 11 11110 111 1111111 1222222333 367777777553 35678
Q ss_pred hhhhHHHHHHHhCC
Q 011638 421 VYFPVEMYIAQKKI 434 (480)
Q Consensus 421 ~ilP~~~~l~~~~~ 434 (480)
|.++.+.+++.+++
T Consensus 355 ~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 355 YLFVILSHYILIDE 368 (444)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888776654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.51 E-value=7e-12 Score=129.96 Aligned_cols=289 Identities=11% Similarity=-0.011 Sum_probs=160.8
Q ss_pred CCcccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhh--cCCCCCCcccccH
Q 011638 29 DGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYR--SGDPVTGKRNYTY 105 (480)
Q Consensus 29 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~-~s~~~l~~~~~--~~~~~~~~~~~~y 105 (480)
+.+.+|+.++++.+...++.++| +..+|. ....|.. .++..++.+++.. ..+..+.|... ..+ .| ..
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G----G~ 75 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG----GV 75 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CH
T ss_pred cCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC--CC----Ch
Confidence 34567889999999999999996 567775 4556653 3444444444333 36677777665 443 33 56
Q ss_pred HHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCc--hhH-HHHHHHHHhhC
Q 011638 106 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNP--YMI-AFGIVEIVLSQ 182 (480)
Q Consensus 106 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~i-i~~~~~~pl~~ 182 (480)
...+++.+||+.+++..+..++.......++....++.+..++.. +.. . ...+ +.+ +..++++-+..
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~------~-~~~~~~~~~~~~~~~~~~~in 145 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW---PAL------N-EDPITKTIAALIILWALALTQ 145 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC---GGG------T-SCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccc------c-cCcHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999888888777777777777666544210 000 0 0111 111 12222222334
Q ss_pred CCCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHh
Q 011638 183 IPDFDQLWWLSIVAAVMS-FTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIE 261 (480)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~-~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 261 (480)
.+..|....+..+..... +...++.+...+.....+.+.+.. .++++..+.....+...++...+|+|.|......
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE---MDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC---------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 455555555554433221 111111222222222221111000 0011111111112334567788999999999999
Q ss_pred hhhhcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc---c---ccc-cccCC--CchHHHHHHHHHHH
Q 011638 262 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN---L---LTG-FGFYN--PYWLLDIANAAIVI 332 (480)
Q Consensus 262 i~~em~~p~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~---i---l~~-~~~~~--~~~~~~~~~~~~~i 332 (480)
..+|+|||+ |+++|++..+..++.++|++..+......+++.... . ... +.... ..+...+..+...+
T Consensus 223 ~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 299 (511)
T 4djk_A 223 HVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLL 299 (511)
T ss_dssp GGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHH
T ss_pred HHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 999999997 899999999999999999999888777776643221 1 000 11111 24556666676666
Q ss_pred HHHHhhhhhhh
Q 011638 333 HLVGAYQVFCQ 343 (480)
Q Consensus 333 ~~~~s~pl~~~ 343 (480)
..+.+..-.+.
T Consensus 300 ~~~~~~~~~~~ 310 (511)
T 4djk_A 300 GVLAEIASWIV 310 (511)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 66666544433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.62 E-value=2e-05 Score=80.84 Aligned_cols=248 Identities=11% Similarity=0.050 Sum_probs=137.1
Q ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 011638 31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQ-LGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 109 (480)
Q Consensus 31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~-~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (480)
+++|+.++++-+..-++..++.+.+.+...+.. .++..+++..++..++...-+.++.....+. + .++.++.
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~----G---l~~~v~~ 94 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW----G---INFTVAA 94 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----C---CCHHHHT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----C---CChhhhh
Confidence 345666777777777777777776766655554 2345555555555555544444443333321 1 3799999
Q ss_pred HHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchh
Q 011638 110 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 189 (480)
Q Consensus 110 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (480)
+..||+++..+..+...+.++|-...-....++.+..++.... + ..+...+.+++.++.+++. ...++.+
T Consensus 95 R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g--------~~~~~v~~~i~~~l~~~~~-~~G~~~i 164 (501)
T 2jln_A 95 RMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G--------FTNLPLWIVIFGAIQVVTT-FYGITFI 164 (501)
T ss_dssp TTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------CCCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------cchHHHHHHHHHHHHHHHH-HhCHHHH
Confidence 9999999999999999999999998888889999888775321 1 0001234455666666666 4567777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHH-HHHhcccchhHhhhhhcCC
Q 011638 190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDI-AFAYSYSIILIEIQDTVKS 268 (480)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~i~~i~~em~~ 268 (480)
+.+..+.....+..++......+.+ ....-++... ..+....+.+..++..+ .+.-....+.+...+.+|+
T Consensus 165 ~~~~~~~~p~~~i~~i~~~~~~l~~---~g~~~~~~~~-----~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~ 236 (501)
T 2jln_A 165 RWMNVFASPVLLAMGVYMVYLMLDG---ADVSLGEVMS-----MGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKV 236 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HTCCHHHHTT-----CCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCcchhhhc-----cCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCC
Confidence 7777776655443222222222211 1100000000 00001122344443332 2222444678899999988
Q ss_pred CCc-cchh-------hhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011638 269 PPS-ESKT-------MKKASLISVGVTTLFYMLCGCFGYAAFG 303 (480)
Q Consensus 269 p~~-~~~~-------~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 303 (480)
+++ .+|+ .......+..+...+...+|+......+
T Consensus 237 ~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~ 279 (501)
T 2jln_A 237 DPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVG 279 (501)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 853 1112 2223334455555555555654433333
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.12 E-value=0.0069 Score=62.39 Aligned_cols=152 Identities=10% Similarity=0.139 Sum_probs=85.6
Q ss_pred cccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
.|+.+++...+.+..+.+++. .+.+|-...+.|+......... ++.-...+..+..-.++.+ ..|..|.-++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~------~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG------IYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT------CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC------CccHHHHHHH
Confidence 577788888888888888765 4778988888887543211111 1111122233333334322 3599999999
Q ss_pred hccCcceeehhHHHHH-HHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 112 NLGGFQVKICGLVQYL-NLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 112 ~~G~~~~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
-||++.+.+..+...+ +.+..+.+-+...+..++.+++ ++....+++.++++........++...
T Consensus 92 Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 92 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------CC
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999887766654432 2222333333334445554443 222334456666667778888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011638 191 WLSIVAAVMSFTYST 205 (480)
Q Consensus 191 ~~s~~~~~~~~~~~~ 205 (480)
+.-.+..+..+...+
T Consensus 158 ~TD~iQ~~im~~g~~ 172 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGF 172 (530)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888777655333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.65 E-value=0.067 Score=55.79 Aligned_cols=151 Identities=10% Similarity=0.139 Sum_probs=83.7
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638 33 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 111 (480)
Q Consensus 33 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (480)
.|+.+++.....+..+.+++.. +..|....+.|+........ ..+........+..-.++.+ ..|..|.-++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~------~~T~~e~l~~ 120 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKG------IYTIPEFVEK 120 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTT------CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC------CCCcHHHHHH
Confidence 5677888888888877777554 67888888888743221111 01111112222333333322 3599999998
Q ss_pred hccCcceeehhHHHHH-HHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638 112 NLGGFQVKICGLVQYL-NLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 190 (480)
Q Consensus 112 ~~G~~~~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (480)
-||++.+.+..+...+ ..+......+...+..++.+++ ++.....++.++++........++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 8998877666554332 2333333334445555665553 222333455666667777888898888
Q ss_pred HHHHHHHHHHHHHH
Q 011638 191 WLSIVAAVMSFTYS 204 (480)
Q Consensus 191 ~~s~~~~~~~~~~~ 204 (480)
+.-.+..+..+...
T Consensus 187 ~TD~iQ~iiml~~~ 200 (593)
T 2xq2_A 187 WTDVIQVFFLVLGG 200 (593)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776655433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=67.87 E-value=1.1e+02 Score=30.90 Aligned_cols=108 Identities=16% Similarity=0.021 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHH----HHHHHHHHHHHHHHHHHHHhhh-cCCCCCCcccccHHHHHH
Q 011638 37 TLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGP----SVMFLFSFVTYYTSTLLAACYR-SGDPVTGKRNYTYVDAVR 110 (480)
Q Consensus 37 s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gi----i~l~~~~~~s~~s~~~l~~~~~-~~~~~~~~~~~~y~~~~~ 110 (480)
|-.+-++..++..+|-| +.-.||-..+-|-..-+ ++++++++=-.+.=..+.|-.. +.+ . + ....|..++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~-~-~i~a~~~l~- 85 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-G-T-TPAIFYLLW- 85 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-C-S-HHHHHHHHS-
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-C-C-HHHHHHHhc-
Confidence 45677788889999987 78899999887743223 3333333322233333333111 111 1 1 011343332
Q ss_pred HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhh
Q 011638 111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSN 151 (480)
Q Consensus 111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~ 151 (480)
.+..-..+.+...+..+..++-|.+..+-.+..++.++
T Consensus 86 ---~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~ 123 (519)
T 2a65_A 86 ---RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 123 (519)
T ss_dssp ---CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22112235556666666677777777776666555543
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.63 E-value=3e+02 Score=26.28 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=42.2
Q ss_pred ccHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Q 011638 103 YTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS 150 (480)
Q Consensus 103 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~ 150 (480)
....++.+..+|+++..++.+...+..+++..+++...++.+..+...
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999999999999999888777653
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=31.53 E-value=1.8e+02 Score=27.98 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=39.8
Q ss_pred cHHHHHHHhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhh
Q 011638 104 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSN 151 (480)
Q Consensus 104 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~ 151 (480)
...+..+..+|+++..++.+...+..+++..+.+...++.+..+....
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 306 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDG 306 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHS
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567888888898888888888888999999999888888888777643
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=27.36 E-value=4e+02 Score=26.78 Aligned_cols=169 Identities=9% Similarity=-0.036 Sum_probs=0.0
Q ss_pred CCCcccccchHHHHHHHHHhhhhhhhhh-------------------------HHHHHHHhhChhHHHHHHHHHHHHHHH
Q 011638 28 DDGRLKRTGTLWTASAHIITAVIGSGVL-------------------------SLAWATAQLGWIAGPSVMFLFSFVTYY 82 (480)
Q Consensus 28 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL-------------------------~lP~af~~~G~~~gii~l~~~~~~s~~ 82 (480)
.+++.+..-|.++-+..+..+-+|.|++ ++-+.|-+-|.-+ +.+-..
T Consensus 88 G~~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~--------WAiYav 159 (539)
T 4ain_A 88 GRIDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHP--------WAIYAI 159 (539)
T ss_dssp SCTTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHH--------HHHHHH
T ss_pred CCCCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHH--------HHHHHH
Q ss_pred HHHHHHHhhhcCCCCCCcccccHHHHHHH-hccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCC
Q 011638 83 TSTLLAACYRSGDPVTGKRNYTYVDAVRS-NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNP 161 (480)
Q Consensus 83 s~~~l~~~~~~~~~~~~~~~~~y~~~~~~-~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~ 161 (480)
.+..+.....+.......|..=|+=++++ .-|+.|+.+=-+.++...+|...+.-...-|.-.-+-.-+..+..
T Consensus 160 ~glalaY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~----- 234 (539)
T 4ain_A 160 VGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDP----- 234 (539)
T ss_dssp HHHHHHCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC-----
T ss_pred HHHHHHHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCC-----
Q ss_pred CccCCCchhHHHHHHHHHhhCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Q 011638 162 CHMNSNPYMIAFGIVEIVLSQIPDF-DQLWWLSIVAAVMSFTYSTIGLGL 210 (480)
Q Consensus 162 ~~~~~~~~~ii~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~ 210 (480)
....+..+++...++.-++....+ |.++++|-+...+.+..++.++..
T Consensus 235 -~~~~qi~ii~vit~i~~~Sa~sGl~kGIk~LS~~N~~La~~Ll~fvli~ 283 (539)
T 4ain_A 235 -SDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVV 283 (539)
T ss_dssp -STTTTTHHHHHHHHHHHHHHHC---CCHHHHGGGHCCCCCHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=20.94 E-value=2.2e+02 Score=28.44 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhcccC-CCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 011638 124 VQYLNLFGVAIGYTIASSISMMAIERSNCFHS-KGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT 202 (480)
Q Consensus 124 ~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 202 (480)
.........++.+.+..+|+....+.....+. .++.++..+.+..|.++.+++...|.....++.++..+.++ ..-+.
T Consensus 411 i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~-alPf~ 489 (509)
T 2wsw_A 411 ATMWGFFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAG-GCPLF 489 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HhhHH
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q 011638 203 YSTIGLGLGIAKVAETGKFR 222 (480)
Q Consensus 203 ~~~i~~~~~i~~~~~~~~~~ 222 (480)
...+.+.....+...+++.|
T Consensus 490 ~v~l~~~~sl~k~l~~d~~~ 509 (509)
T 2wsw_A 490 FVNIMVTLSFIKDAKVHWKD 509 (509)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhcCC
Done!