Query 011639
Match_columns 480
No_of_seqs 214 out of 1259
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1E-30 2.2E-35 277.1 24.5 376 74-472 33-447 (472)
2 KOG1338 Uncharacterized conser 100.0 6.2E-29 1.4E-33 243.7 11.9 241 74-338 11-273 (466)
3 PF00856 SET: SET domain; Int 99.7 1.1E-16 2.3E-21 143.6 6.0 51 269-321 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.4 2.7E-12 5.9E-17 112.1 9.7 100 360-464 13-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.4 5.3E-07 1.1E-11 76.4 5.0 50 271-320 67-116 (116)
6 KOG1085 Predicted methyltransf 95.8 0.0078 1.7E-07 58.3 3.6 52 278-330 334-385 (392)
7 KOG4442 Clathrin coat binding 95.0 0.03 6.6E-07 60.5 4.9 45 277-322 193-238 (729)
8 KOG2589 Histone tail methylase 94.7 0.028 6E-07 56.4 3.6 42 278-323 197-239 (453)
9 KOG1080 Histone H3 (Lys4) meth 93.7 0.07 1.5E-06 61.2 4.4 71 249-322 914-984 (1005)
10 KOG1079 Transcriptional repres 92.9 0.1 2.2E-06 56.3 4.0 47 277-323 665-711 (739)
11 COG2940 Proteins containing SE 87.8 0.27 5.9E-06 52.8 1.7 50 274-323 402-451 (480)
12 smart00317 SET SET (Su(var)3-9 85.6 0.9 1.9E-05 37.7 3.4 35 90-127 3-38 (116)
13 KOG1083 Putative transcription 84.6 1 2.3E-05 51.2 4.2 46 277-323 1250-1296(1306)
14 KOG1082 Histone H3 (Lys9) meth 75.9 2.3 4.9E-05 44.0 3.1 47 277-323 272-322 (364)
15 COG1188 Ribosome-associated he 70.6 4.8 0.0001 33.4 3.2 53 242-323 10-62 (100)
16 KOG2084 Predicted histone tail 48.5 24 0.00052 37.1 4.7 63 270-336 198-266 (482)
17 KOG1338 Uncharacterized conser 47.2 22 0.00047 36.8 3.7 71 271-347 269-343 (466)
18 KOG1141 Predicted histone meth 42.0 15 0.00032 41.3 1.8 58 277-334 1189-1253(1262)
19 KOG2461 Transcription factor B 41.2 23 0.00051 37.0 3.1 32 302-334 124-155 (396)
20 KOG1085 Predicted methyltransf 27.1 1.7E+02 0.0037 29.1 6.1 31 87-120 256-287 (392)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1e-30 Score=277.13 Aligned_cols=376 Identities=22% Similarity=0.249 Sum_probs=258.9
Q ss_pred ccccccccc-ccCC--CceEEeeC-CCccEEEEeccCCCccCCceEEEcCccccccccccCCCCCCCCCCCCCchhhhhh
Q 011639 74 DFYKIGYVR-SMRA--YGVEFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDII 149 (480)
Q Consensus 74 ~f~~i~Wl~-~~G~--~~v~i~~~-~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~~~~~l 149 (480)
.+. .|+. +.+. +.++.... ..|.|+.+.+.+.+ |..+...|....++....... .+..+.....
T Consensus 33 g~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 100 (472)
T KOG1337|consen 33 GLV--RWAASESIASSENIKSLKFWLTGNGLSSSKSSLP---GNDIDEWPLLVSIRLIKGEKL-------LLVPPLLLLI 100 (472)
T ss_pred cce--eeeecccCCCccccccceeccccCCcchhhhccc---cccccccchhhhhhhhhhhhh-------ccCCchhhhc
Confidence 455 8888 4442 33333333 34888888888765 577777777766665433210 0111111122
Q ss_pred ccCCCCCchh-HHHHHHHHHHh-CCCCChhhhhhhcCCCCCCCCCccccCHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Q 011639 150 NSTDPETDWD-LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKN 227 (480)
Q Consensus 150 ~~~~~~~~~~-~~Lal~Ll~e~-~~~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~ 227 (480)
+...+...+. ..++++++++. .+..|.|.+|+..||..+ ++|++|...++..|+++.....+..++..++..+.+.
T Consensus 101 ~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (472)
T KOG1337|consen 101 AKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAEL 178 (472)
T ss_pred cccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHH
Confidence 2222222333 67889999998 566699999999999995 7899999999999999999988888777666644333
Q ss_pred hc--cCCccccc---ccCCCHHHHHHHHHhhhccccccccccc---ccccCceeeeeeecccCCCCCCCceEEEEecCCe
Q 011639 228 WH--SGVPLKIK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRM 299 (480)
Q Consensus 228 ~~--~~~p~~~~---~~~~t~e~f~WA~~~v~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~ 299 (480)
.. ...+..+. ...++++.|.||+++|.||+|+...... .......+|+|++||+||+++. +...|+..+++
T Consensus 179 ~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~ 257 (472)
T KOG1337|consen 179 LEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA 257 (472)
T ss_pred HHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc
Confidence 21 11111111 1127899999999999999999988731 1235689999999999999987 45667666665
Q ss_pred EEEEEEecccCCCCcEEEEccCCCCChHHHHHhCCccCCCCCCCeEEecccccccc---chhhchhhhcCCCccccccee
Q 011639 300 LEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL---DSFLSVFNISGLPEEYYHNSK 376 (480)
Q Consensus 300 ~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~~~---d~~~~~l~~~gl~~~~~~~~~ 376 (480)
+.+++.++|++||||||+||++ +|++||.+|||+.++||+|.|.+.+...... ......+...+++...++.+.
T Consensus 258 --~~l~~~~~v~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (472)
T KOG1337|consen 258 --VELVAERDVSAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSIL 334 (472)
T ss_pred --EEEEEeeeecCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEe
Confidence 6789999999999999999999 7999999999999999999999877654211 111223444555544333222
Q ss_pred eccCCCccchHHHHHHHH---hcC------------------CCCCCCCCCCChhHHHHHHHHHHH-HHHHHHhCCCChH
Q 011639 377 ISSDEESFIDGAVIAAAR---TLP------------------TWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSK 434 (480)
Q Consensus 377 l~~~~~~~~d~~Ll~~lr---~l~------------------~~~~~~~~~s~~~E~~~~~~L~~~-~~~~L~~y~ttle 434 (480)
... .. .. .++.+.. .+. .+.....+.+.++|.+.+..+... |...+..+.++++
T Consensus 335 ~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 410 (472)
T KOG1337|consen 335 LTG--EP-VS-EMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALID 410 (472)
T ss_pred ecC--Cc-hh-hhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhh
Confidence 221 11 00 1111111 110 011123355667999999999998 8888899999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011639 435 QDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALD 472 (480)
Q Consensus 435 eD~~~L~~~~~~~~~~~~A~~~R~~eK~IL~~~l~~L~ 472 (480)
+|+..+... .++.+..++..++.++|+||.+++..+.
T Consensus 411 ~~~~vl~~~-~l~~~~~~~~k~~~~~~~iL~~~~~~~~ 447 (472)
T KOG1337|consen 411 EDESVLKDN-ILSKLLELLEKLRTLEKRILEKSLKLLR 447 (472)
T ss_pred hhhhhhccc-ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999988863 5678899999999999999999998776
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=6.2e-29 Score=243.72 Aligned_cols=241 Identities=15% Similarity=0.225 Sum_probs=188.2
Q ss_pred cccccccccccC----CCceEEee---CCC--ccEEEEeccCCCccCCceEEEcCccccccccccCCCCCCCCCCCCCch
Q 011639 74 DFYKIGYVRSMR----AYGVEFKE---GPD--GFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHP 144 (480)
Q Consensus 74 ~f~~i~Wl~~~G----~~~v~i~~---~~~--GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~ 144 (480)
.|. .|++..+ .+.|++.. ..+ |+|++|+++|++ |+.++.+|+++++++.+...-..+| ..
T Consensus 11 ~fl--~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkk---gE~Lf~~prdsvLsvtts~li~~lp------s~ 79 (466)
T KOG1338|consen 11 RFL--LWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKK---GESLFAYPRDSVLSVTTSALITPLP------SD 79 (466)
T ss_pred HHH--HHHHHhhheeecccccccccchhhhhcccceeeehhhcC---CceEEEecCccEEeeehHHhcccch------HH
Confidence 467 9999887 35677776 233 899999999999 6999999999999998864210011 11
Q ss_pred hhhhhccCCCCCchhHHHHHHHHHHhC-CCCChhhhhhhcCCCCCCCCCccccCHHHHhccCCCcHHHHHHHHHHHHHHH
Q 011639 145 IFDIINSTDPETDWDLRLACLLLYAFD-QDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREF 223 (480)
Q Consensus 145 ~~~~l~~~~~~~~~~~~Lal~Ll~e~~-~~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~ 223 (480)
....+++ ...| ..|++.|++|.+ +..|+|+||++.+|+..++++|+||+++|+..|..+.+++.+.+.++.|.+.
T Consensus 80 ~rv~Lne---~gsw-~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~ 155 (466)
T KOG1338|consen 80 IRVLLNE---VGSW-GMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKD 155 (466)
T ss_pred HHHHhhc---CCcH-HHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHH
Confidence 1123433 3468 567888899985 4449999999999999999999999999999876666667688999999999
Q ss_pred HHHHhc---cCCcccccccCCCHHHHHHHHHhhhcccccccccccc--------cccCceeeeeeecccCCCCC-CCceE
Q 011639 224 WEKNWH---SGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGA--------LVQDANMLIPYADMLNHSFQ-PNCFF 291 (480)
Q Consensus 224 ~~~~~~---~~~p~~~~~~~~t~e~f~WA~~~v~SRaf~~~~~~~~--------~~~~~~~LvP~~Dm~NH~~~-~~~~~ 291 (480)
|...+. ..+|..+. .+++++|..+++++.+.+|.+...... ......+|+|.+||+||+.. .|++.
T Consensus 156 ~i~~i~pf~~~~p~vfs--~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl 233 (466)
T KOG1338|consen 156 FIFVIQPFKQHCPIVFS--RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANL 233 (466)
T ss_pred HHHHHHHHHHhCcchhc--ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccce
Confidence 987663 23443332 378999999999999999999877321 13458999999999999998 66777
Q ss_pred EEEecCCeEEEEEEecccCCCCcEEEEccCCCCChHHHHHhCCccCC
Q 011639 292 HWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSP 338 (480)
Q Consensus 292 ~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~ 338 (480)
.|. ++| +.|.|.|+|.+|+||+++||-+ +|. |++||.+.-
T Consensus 234 ~y~--~Nc--L~mva~r~iekgdev~n~dg~~-p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 234 RYE--DNC--LEMVADRNIEKGDEVDNSDGLK-PMG--LLKLTKALC 273 (466)
T ss_pred ecc--Ccc--eeeeecCCCCCccccccccccC-cch--hhhhhhhcc
Confidence 776 688 5778999999999999999998 788 778887763
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.65 E-value=1.1e-16 Score=143.55 Aligned_cols=51 Identities=39% Similarity=0.757 Sum_probs=43.2
Q ss_pred cCceeeeeeecccCCCCCCCceEEEEe--cCCeEEEEEEecccCCCCcEEEEccC
Q 011639 269 QDANMLIPYADMLNHSFQPNCFFHWRF--KDRMLEVMVNAGQHVRRGEEMTVNYM 321 (480)
Q Consensus 269 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~--~~~~~~~~l~a~r~i~~GeEv~isYG 321 (480)
....+|+|++||+||++.+||.+.+.. .+++ +.++|.|+|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~--~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGC--LVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTE--EEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccce--EEEEECCccCCCCEEEEEEC
Confidence 357999999999999999999888874 3455 78899999999999999998
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.37 E-value=2.7e-12 Score=112.11 Aligned_cols=100 Identities=28% Similarity=0.465 Sum_probs=78.3
Q ss_pred chhhhcCCCcccccceeeccCCCccchHHHHHHHHhcCC----------------CCCCCCCCCChhHHHHHHHHHHHHH
Q 011639 360 SVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPT----------------WSDGDVPLVPSIERKAVKELQEECR 423 (480)
Q Consensus 360 ~~l~~~gl~~~~~~~~~l~~~~~~~~d~~Ll~~lr~l~~----------------~~~~~~~~s~~~E~~~~~~L~~~~~ 423 (480)
+.|+..|+... ..+.+..+++ +|.+|++++|++.. +.....+++..||.+++++|...|.
T Consensus 13 ~lL~~~gl~~~--~~f~l~~~~~--~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~~ 88 (128)
T PF09273_consen 13 QLLEEHGLSGD--QTFDLRADGP--LPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLCE 88 (128)
T ss_dssp HHHHHTTS-SE--EEEEEECCSS--SHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCC--ceeeeeCCCC--CCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHHH
Confidence 45778888765 3355666555 78899999999710 1112346788899999999999999
Q ss_pred HHHHhCCCChHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 011639 424 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFI 464 (480)
Q Consensus 424 ~~L~~y~ttleeD~~~L~~~~~~~~~~~~A~~~R~~eK~IL 464 (480)
.+|+.||||++||+++|++. ....++++|++||++||+||
T Consensus 89 ~~L~~y~TtleeD~~~L~~~-~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 89 ARLSAYPTTLEEDEELLQSN-DLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHTTSSS-HHHHHHHCHTC-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHhcC-CCcHHHHHHHHHHHHhHhcC
Confidence 99999999999999999984 56677999999999999998
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.35 E-value=5.3e-07 Score=76.38 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=42.4
Q ss_pred ceeeeeeecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEcc
Q 011639 271 ANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320 (480)
Q Consensus 271 ~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isY 320 (480)
...+.|+++++||++.||+.+.+...++...+.++|.|+|++||||+++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 44489999999999999998887665554347889999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=95.84 E-value=0.0078 Score=58.31 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=42.8
Q ss_pred ecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEccCCCCChHHHH
Q 011639 278 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330 (480)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL 330 (480)
.-++||+-.+|+......-++.-.+++.|.++|.+|||++..||.+ |-+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR-Skesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR-SKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc-chhHHh
Confidence 3489999999997766555666668899999999999999999998 666554
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.03 Score=60.52 Aligned_cols=45 Identities=33% Similarity=0.565 Sum_probs=36.8
Q ss_pred eecccCCCCCCCceE-EEEecCCeEEEEEEecccCCCCcEEEEccCC
Q 011639 277 YADMLNHSFQPNCFF-HWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 322 (480)
Q Consensus 277 ~~Dm~NH~~~~~~~~-~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 322 (480)
++=|+||++.|||.+ .|.. .+.+.+-+.+.+.|++||||+..|+-
T Consensus 193 laRFiNHSC~PNa~~~KWtV-~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTV-PDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHHhhcCCCCCCceeeeeee-CCeeEEEEeEecccCCCceeeEeccc
Confidence 466899999999977 4655 45666788899999999999988763
No 8
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=94.74 E-value=0.028 Score=56.43 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=33.5
Q ss_pred ecccCCCCCCCceEEEEecC-CeEEEEEEecccCCCCcEEEEccCCC
Q 011639 278 ADMLNHSFQPNCFFHWRFKD-RMLEVMVNAGQHVRRGEEMTVNYMHG 323 (480)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~-~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (480)
+-++||+..+||++.-. + +. ..+++.|||++||||+--||..
T Consensus 197 aafINHDCrpnCkFvs~--g~~t--acvkvlRDIePGeEITcFYgs~ 239 (453)
T KOG2589|consen 197 AAFINHDCRPNCKFVST--GRDT--ACVKVLRDIEPGEEITCFYGSG 239 (453)
T ss_pred HHhhcCCCCCCceeecC--CCce--eeeehhhcCCCCceeEEeeccc
Confidence 35899999998864433 3 33 5779999999999999999974
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=93.66 E-value=0.07 Score=61.21 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=47.9
Q ss_pred HHHhhhcccccccccccccccCceeeeeeecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEccCC
Q 011639 249 AVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 322 (480)
Q Consensus 249 A~~~v~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 322 (480)
...+-.|..|.+...- .-+..-.-=++-++||++.|||....-..++...++++|.|+|.+||||+-+|--
T Consensus 914 ~~gi~~sYlfrid~~~---ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 914 RMGIGDSYLFRIDDEV---VVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred ccCcccceeeecccce---EEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccc
Confidence 4444555555554221 0122233347789999999999665544455556999999999999999999964
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=92.90 E-value=0.1 Score=56.33 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=34.4
Q ss_pred eecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEccCCC
Q 011639 277 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (480)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (480)
.+-++||+.+|||-...-...+.-.+-+.|.|.|.+|||||..|+-.
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 45688999999984433222222236778999999999999999753
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=87.80 E-value=0.27 Score=52.80 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=38.0
Q ss_pred eeeeecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEccCCC
Q 011639 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (480)
Q Consensus 274 LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (480)
...+.=++||+..||+........+-..+..++.++|++||||+++||..
T Consensus 402 ~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 402 AGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred cccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 33445599999999987665443332346778999999999999999976
No 12
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=85.55 E-value=0.9 Score=37.69 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEeeCCC-ccEEEEeccCCCccCCceEEEcCcccccccc
Q 011639 90 EFKEGPD-GFGVFASKDIEPRRRARLVMQIPLELMLTIR 127 (480)
Q Consensus 90 ~i~~~~~-GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~ 127 (480)
++...++ |+||+|+++|++ |++|+..+-..+....
T Consensus 3 ~~~~~~~~G~gl~a~~~i~~---g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 3 EVFKSPGKGWGVRATEDIPK---GEFIGEYVGEIITSEE 38 (116)
T ss_pred EEEecCCCcEEEEECCccCC---CCEEEEEEeEEECHHH
Confidence 3444455 999999999999 6999988887665543
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=84.59 E-value=1 Score=51.17 Aligned_cols=46 Identities=33% Similarity=0.557 Sum_probs=36.6
Q ss_pred eecccCCCCCCCceE-EEEecCCeEEEEEEecccCCCCcEEEEccCCC
Q 011639 277 YADMLNHSFQPNCFF-HWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (480)
Q Consensus 277 ~~Dm~NH~~~~~~~~-~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (480)
.+-+.||+..+||.. .|.. +|-+.+.|.|.|+|.+||||+..|..+
T Consensus 1250 ~~RfinhscKPNc~~qkwSV-NG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1250 GARFINHSCKPNCEMQKWSV-NGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccccCCCCccccccc-cceeeeeeeecCCCCCCceEEEecccc
Confidence 344568999999965 4554 456668889999999999999999765
No 14
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=75.87 E-value=2.3 Score=44.02 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=34.8
Q ss_pred eecccCCCCCCCceEEEEecC----CeEEEEEEecccCCCCcEEEEccCCC
Q 011639 277 YADMLNHSFQPNCFFHWRFKD----RMLEVMVNAGQHVRRGEEMTVNYMHG 323 (480)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~----~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (480)
++=++||+..||..+..-..+ ....+.+.|.++|.+|+|++..||..
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 456899999998754332211 12346778999999999999999976
No 15
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=70.64 E-value=4.8 Score=33.40 Aligned_cols=53 Identities=13% Similarity=0.328 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhhhcccccccccccccccCceeeeeeecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCcEEEEccC
Q 011639 242 DPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 321 (480)
Q Consensus 242 t~e~f~WA~~~v~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG 321 (480)
-.+.|+|+.-++-+|+..-..-++ -.+.++ +. ..++.+.++.||+|.+.||
T Consensus 10 RLDKwL~~aR~~KrRslAk~~~~~-----------------------GrV~vN---G~---~aKpS~~VK~GD~l~i~~~ 60 (100)
T COG1188 10 RLDKWLWAARFIKRRSLAKEMIEG-----------------------GRVKVN---GQ---RAKPSKEVKVGDILTIRFG 60 (100)
T ss_pred ehHHHHHHHHHhhhHHHHHHHHHC-----------------------CeEEEC---CE---EcccccccCCCCEEEEEeC
Confidence 468999999999999987654321 145665 32 3389999999999999999
Q ss_pred CC
Q 011639 322 HG 323 (480)
Q Consensus 322 ~~ 323 (480)
..
T Consensus 61 ~~ 62 (100)
T COG1188 61 NK 62 (100)
T ss_pred Cc
Confidence 87
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=48.48 E-value=24 Score=37.14 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=45.8
Q ss_pred CceeeeeeecccCCCCCCCceEEEEecCCeEEEEEEecccCCCCc-EEEEccCCCC-----ChHHHHHhCCcc
Q 011639 270 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGE-EMTVNYMHGQ-----MNDMLMQRYGFS 336 (480)
Q Consensus 270 ~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~Ge-Ev~isYG~~~-----sN~~LL~~YGFv 336 (480)
...+|.|..=++||+..||+.+.++ +.. ..+.+...+.+++ +++++|-... -...|...|.|.
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~ 266 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFD--GRG--LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFS 266 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEEC--Cce--eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhcccee
Confidence 4688999999999999999876665 344 4456777777776 9999998641 133466666673
No 17
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.22 E-value=22 Score=36.82 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=52.8
Q ss_pred ceeeeeeecccCCCCCCC--ceEEEEecCCeEEEEEEecccCCCCcEEEEccCCCCChHHHHHhCC-ccC-CCCCCCeEE
Q 011639 271 ANMLIPYADMLNHSFQPN--CFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG-FSS-PVNPWNVIQ 346 (480)
Q Consensus 271 ~~~LvP~~Dm~NH~~~~~--~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YG-Fv~-~~Np~D~v~ 346 (480)
..+++|+.+|+|-....- +.+-++..++ .+|++.|.+ |.|+-+.|+... +.++...|| |.- +.-|++.+-
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---~tm~~~R~i--l~ql~nt~teld-~~e~~~syd~ftkkE~~p~~g~l 342 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---DTMRNMRLI--LLQLHNTRTELD-INEFHSSYDTFTKKEVKPAIGKL 342 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---chHHHHHHH--HHHhccchhhhh-hHHHHHhhhhhhhccccccceee
Confidence 689999999998876521 1223443222 467888998 999999999995 999999999 544 367888766
Q ss_pred e
Q 011639 347 F 347 (480)
Q Consensus 347 l 347 (480)
+
T Consensus 343 v 343 (466)
T KOG1338|consen 343 V 343 (466)
T ss_pred e
Confidence 5
No 18
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=42.00 E-value=15 Score=41.29 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=37.4
Q ss_pred eecccCCCCCCCceE---EEEecCCeE-EEEEEecccCCCCcEEEEccCCCC---ChHHHHHhCC
Q 011639 277 YADMLNHSFQPNCFF---HWRFKDRML-EVMVNAGQHVRRGEEMTVNYMHGQ---MNDMLMQRYG 334 (480)
Q Consensus 277 ~~Dm~NH~~~~~~~~---~~~~~~~~~-~~~l~a~r~i~~GeEv~isYG~~~---sN~~LL~~YG 334 (480)
+.-++||++.||..+ .++.-+-.+ -|.+.|.+-|++|.|++-.||-.. ...+|+...|
T Consensus 1189 lGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1189 LGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 455899999998743 333222221 244568899999999999998421 2344555544
No 19
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=41.21 E-value=23 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEEEecccCCCCcEEEEccCCCCChHHHHHhCC
Q 011639 302 VMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG 334 (480)
Q Consensus 302 ~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YG 334 (480)
+..+|.|+|.+||||.+.||... +.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~-~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEY-AEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccch-HhHhcccCC
Confidence 56689999999999999999985 888888777
No 20
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=27.05 E-value=1.7e+02 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=23.4
Q ss_pred CceEEeeCCC-ccEEEEeccCCCccCCceEEEcCc
Q 011639 87 YGVEFKEGPD-GFGVFASKDIEPRRRARLVMQIPL 120 (480)
Q Consensus 87 ~~v~i~~~~~-GrGl~At~dI~~~~~Ge~ll~IP~ 120 (480)
.++.+....+ ||||+|+..++. |+.|++--=
T Consensus 256 egl~~~~~dgKGRGv~a~~~F~r---gdFVVEY~G 287 (392)
T KOG1085|consen 256 EGLLEVYKDGKGRGVRAKVNFER---GDFVVEYRG 287 (392)
T ss_pred cceeEEeeccccceeEeeccccc---CceEEEEec
Confidence 4566666555 999999999997 688876543
Done!