Query 011640
Match_columns 480
No_of_seqs 199 out of 313
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 3.3E-43 1.1E-47 297.6 -1.6 87 180-266 5-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 9.7E-42 3.3E-46 285.7 -3.9 82 183-264 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 3.5E-32 1.2E-36 214.1 0.3 59 182-240 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 24.7 14 0.00049 35.3 -0.3 36 198-234 100-135 (269)
5 2dt7_A Splicing factor 3A subu 21.9 21 0.00072 25.6 0.2 12 195-206 19-30 (38)
6 2d8r_A THAP domain-containing 14.2 49 0.0017 27.0 0.7 12 183-194 9-20 (99)
7 4a6q_A Histone deacetylase com 12.6 32 0.0011 31.2 -0.9 29 202-241 20-48 (143)
8 1loi_A Cyclic 3',5'-AMP specif 8.7 61 0.0021 21.6 -0.4 21 224-244 5-25 (26)
9 4frf_A Inositol polyphosphate 7.3 1E+02 0.0035 29.6 0.3 15 134-148 84-98 (275)
10 2iew_A Inositol polyphosphate 7.3 1E+02 0.0035 31.0 0.3 15 134-148 128-142 (363)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.3e-43 Score=297.59 Aligned_cols=87 Identities=59% Similarity=1.041 Sum_probs=80.5
Q ss_pred CCCCcceeeCCCchhhhcchhhhhccccchhhcCCCeEEECCchhhHhHHhhcccCCccccccchhHHHHHHHHHhhhcc
Q 011640 180 TTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK 259 (480)
Q Consensus 180 ~~~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD~~KRSCR~rLa~HN~RRRk 259 (480)
+.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus 5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk 84 (94)
T 1ul4_A 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84 (94)
T ss_dssp ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 011640 260 SQPEAVR 266 (480)
Q Consensus 260 ~~~~~~~ 266 (480)
+++|+..
T Consensus 85 ~~~~~~~ 91 (94)
T 1ul4_A 85 SSGESGP 91 (94)
T ss_dssp CCCC---
T ss_pred CCCCcCC
Confidence 9999864
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=9.7e-42 Score=285.75 Aligned_cols=82 Identities=46% Similarity=0.929 Sum_probs=78.9
Q ss_pred CcceeeCCCchhhhcchhhhhccccchhhcCCCeEEECCchhhHhHHhhcccCCccccccchhHHHHHHHHHhhhccCCc
Q 011640 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262 (480)
Q Consensus 183 ~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD~~KRSCR~rLa~HN~RRRk~~~ 262 (480)
.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc
Q 011640 263 EA 264 (480)
Q Consensus 263 ~~ 264 (480)
+.
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=3.5e-32 Score=214.14 Aligned_cols=59 Identities=64% Similarity=1.203 Sum_probs=57.2
Q ss_pred CCcceeeCCCchhhhcchhhhhccccchhhcCCCeEEECCchhhHhHHhhcccCCcccc
Q 011640 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240 (480)
Q Consensus 182 ~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD 240 (480)
+.++||||||++||+.+|+|||||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=24.67 E-value=14 Score=35.25 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=27.4
Q ss_pred chhhhhccccchhhcCCCeEEECCchhhHhHHhhccc
Q 011640 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234 (480)
Q Consensus 198 ~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 234 (480)
+..+|++++-|..+- .+.+..++...+.|..|+..|
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 456889999998865 456667777788999997654
No 5
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.85 E-value=21 Score=25.63 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=7.9
Q ss_pred hhcchhhhhccc
Q 011640 195 LSSAKDYHRKHR 206 (480)
Q Consensus 195 Ls~~K~YhrRhr 206 (480)
|..+|+||+||-
T Consensus 19 lk~Ike~Hrr~P 30 (38)
T 2dt7_A 19 LKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC
Confidence 556677777763
No 6
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=14.17 E-value=49 Score=27.02 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=8.7
Q ss_pred CcceeeCCCchh
Q 011640 183 AALCQVEGCGLD 194 (480)
Q Consensus 183 ~~~CQVeGC~~d 194 (480)
+..|-|.||...
T Consensus 9 ~~~C~v~gC~n~ 20 (99)
T 2d8r_A 9 PTNCAAAGCATT 20 (99)
T ss_dssp CCCCCSSSCCCS
T ss_pred CCeeEeCCCCCC
Confidence 446888888854
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=12.60 E-value=32 Score=31.21 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=23.0
Q ss_pred hhccccchhhcCCCeEEECCchhhHhHHhhcccCCccccc
Q 011640 202 HRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241 (480)
Q Consensus 202 hrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD~ 241 (480)
--|.|+|+++.+ -||.+=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 458899999764 48866579999999973
No 8
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=8.73 E-value=61 Score=21.63 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=14.9
Q ss_pred hhHhHHhhcccCCccccccch
Q 011640 224 RRFCQQCSRFHGLSEFDEKKR 244 (480)
Q Consensus 224 qRFCQQCsRFH~L~EFD~~KR 244 (480)
--||.-|++=-.+.=+|+-||
T Consensus 5 dffcetcskpwlvgwwdqfkr 25 (26)
T 1loi_A 5 DFFCETCSKPWLVGWWDQFKR 25 (26)
T ss_dssp HHHHHTSSCTTGGGGHHHHTC
T ss_pred HHHHHhcCCchhhhhHHHhcc
Confidence 358999998777766665554
No 9
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=7.32 E-value=1e+02 Score=29.57 Aligned_cols=15 Identities=27% Similarity=0.824 Sum_probs=12.3
Q ss_pred CccccccCCcccccc
Q 011640 134 PLLGLKLGKRMYFED 148 (480)
Q Consensus 134 ~~~~LklG~r~yfed 148 (480)
++++||||.|+|-.+
T Consensus 84 cVlDiKmG~Rt~~~~ 98 (275)
T 4frf_A 84 SVMDVKMGSRTWYPD 98 (275)
T ss_dssp EEEEEEECSSSCCTT
T ss_pred ceeEeeeecEEcCCC
Confidence 479999999999443
No 10
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=7.27 E-value=1e+02 Score=30.98 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=13.3
Q ss_pred CccccccCCcccccc
Q 011640 134 PLLGLKLGKRMYFED 148 (480)
Q Consensus 134 ~~~~LklG~r~yfed 148 (480)
++++||||.|+|-++
T Consensus 128 cVlDiKmG~Rt~~~~ 142 (363)
T 2iew_A 128 NILDIKLGKTLYDSK 142 (363)
T ss_dssp EEEEEEECSCCCCTT
T ss_pred eEEEEEEcCEECCCC
Confidence 479999999999776
Done!