BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011641
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/468 (63%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/468 (63%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/468 (63%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/468 (62%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNP+FLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/468 (62%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPT+T G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTETYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 597 bits (1539), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKS VPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 593 bits (1528), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/468 (62%), Positives = 357/468 (76%), Gaps = 13/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKST PV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 184
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 185 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 244
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 245 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 304
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 305 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 364
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 365 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 415
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 416 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 463
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 565 bits (1457), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/471 (57%), Positives = 354/471 (75%), Gaps = 14/471 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I WNSD+LPIYEPGLD +V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFS+D+ K ++EAD++F+SVNTPTK G G G A DL Y ES +R IA + KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 123 VVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
VVEKSTVPVK AE+I IL N++ +KFQ+LSNPEFLAEGTA++DL NPDRVLIGG
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGE 190
Query: 180 ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
+PEG +AV L +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+CEA
Sbjct: 191 SSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
TGA +S+VA AVG D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+ V
Sbjct: 251 TGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGV 310
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAR 359
I IN++Q+ RF ++++A +FNTV++KKIA+ GFAFKK+TGDTRE+ AI V K L+ + A+
Sbjct: 311 ININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAK 370
Query: 360 LSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCIL 419
LS+YDP+V + Q+ DL D + + ++V D Y A + AH + +L
Sbjct: 371 LSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVL 419
Query: 420 TEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 470
TEWDEF L+Y +I+++MQ PA +FDGR ++D LREIGF ++IG D
Sbjct: 420 TEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 264/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+GYVG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGYVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
K V +N QK +++VA ++ + A+ G AFK +T D RE P+ ++ LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHG 415
AR++ YDP V +++ +R + ++ D P+ ++++S V D +A +DA
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + + E G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/473 (34%), Positives = 263/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+G VG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGSVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
K V +N QK +++VA ++ + A+ G AFK +T D RE P+ ++ LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHG 415
AR++ YDP V +++ +R + ++ D P+ ++++S V D +A +DA
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + + E G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/473 (34%), Positives = 263/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+G VG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGKVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
K V +N QK +++VA ++ + A+ G AFK +T D RE P+ ++ LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHG 415
AR++ YDP V +++ +R + ++ D P+ ++++S V D +A +DA
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + + E G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 248/473 (52%), Gaps = 44/473 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVV 58
V+I IG GYVG +++ C S EV VD +I + + PIYEPGLD +V
Sbjct: 9 VRIAXIGTGYVG-----LVSGACFSDFGHEVVCVDKDARKIELLHQNVXPIYEPGLDALV 63
Query: 59 -KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS 117
+ L F+TD+ + V +AD VF++V TP++ G G A DL+Y +AAR IA+
Sbjct: 64 ASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR---GDGHA-DLSYVFAAAREIAENL 119
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
++V KSTVPV T + +E+I+ + +++SNPEFL EG AI+D PDRV++G
Sbjct: 120 TKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
E + A + +++Y +L T ++EL K AANAFLA +I+ +N ++
Sbjct: 180 ----TEDEFARQVXREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
LCE GA+V +V+ +G D+RIG KFL+A G+GGSCF KD L L N P
Sbjct: 236 LCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYGGSCFPKDTLALXKTAADNETP--LRI 293
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
+ +++ND +K +V+ + V K + +LG FK +T D R+ P++ + L
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSLSIIAALQD 353
Query: 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHG 415
A + YDP+ E Q + LT V V + Y A A
Sbjct: 354 AGATVKAYDPEGVE-QASKXLT---------------------DVEFVENPYAAADGADA 391
Query: 416 VCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ I+TEWD F+ LD RI ++++ P V D RN+ +L G +GKP
Sbjct: 392 LVIVTEWDAFRALDLTRIKNSLKSPVLV-DLRNIYPPAELERAGLQYTGVGKP 443
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 47/459 (10%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVV 58
+ I +G GYVG +++ C + V +D ++I NS +PIYEPGL+ ++
Sbjct: 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMI 57
Query: 59 -KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS 117
+ + L F T++E+ V EADI+F++V TP G +AD++Y AAR I
Sbjct: 58 ARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAM 112
Query: 118 KSDKIVVEKSTVPVKT----AEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDR 173
++V KSTVPV + +AI++ L I F I SNPEFL EG AI D PDR
Sbjct: 113 SRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDR 172
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNA 232
V++G + +A + + +Y + + R+L ++ SAE++K AANA LA RIS +N
Sbjct: 173 VVVG----VDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMND 228
Query: 233 MSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
++ LCE GA+VS V +G+DSRIG KFL G+GGSCF KD+ L+ E NG
Sbjct: 229 VANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR-- 286
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKG 352
E + V ++N+ QKS ++ V + +A+ G +FK T D RE P++ + +
Sbjct: 287 MEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEK 346
Query: 353 LLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKD 412
LL R+ +YDP ++ +R + +V D Y+A +
Sbjct: 347 LLEVGCRVRVYDPVAMKEAQKR---------------------LGDKVEYTTDMYDAVRG 385
Query: 413 AHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451
A + +TEW EF+ D+ + M + V DGRNV +
Sbjct: 386 AEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNVYE 423
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 221/460 (48%), Gaps = 52/460 (11%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-K 59
M + +G GYVG + + V D++ S + + + IYEPGL+ + +
Sbjct: 21 MASLSVLGLGYVG--VVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGR 78
Query: 60 QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
L F+ E+ V+ D F++V TP G +ADL Y E+AAR + ++
Sbjct: 79 ALSSGRLSFAESAEEAVAATDATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRA 133
Query: 120 D---KIVVEKSTVPVKTAEA-IEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
+VV KSTVP T E + + + + G+KF + SNPEFL EG+A++D F PDR++
Sbjct: 134 KGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRIV 193
Query: 176 IGGRETPEGQKAVKALKDVY-AHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + ++A L DVY A P+ L AEL K A+N FLA +IS N +
Sbjct: 194 IGAGD----ERAASFLLDVYKAVDAPK---LVMKPREAELVKYASNVFLALKISFANEVG 246
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
L + G + +V AVG D RIG + A +GFGGSCF KD L + E GL E+A
Sbjct: 247 LLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGL-EMA- 304
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL 354
K V+++N+Y R+ +++ + + + VLG AFK +T D RE+ ++V + LL
Sbjct: 305 ISKAVLRVNEYM-PRYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLL 363
Query: 355 GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAH 414
AR+ ++DP E + V+ V D
Sbjct: 364 ERGARVYVHDPMAMEKA---------------------RAVLGDSVTYVEDPQALLDQVE 402
Query: 415 GVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANK 454
GV I T W +++ LDY + V DGR V A +
Sbjct: 403 GVIIATAWPQYEGLDY--------RGKVVVDGRYVKKARE 434
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 178/376 (47%), Gaps = 30/376 (7%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
++I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q
Sbjct: 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 62 RGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADV 116
R L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I +
Sbjct: 59 RQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREK 113
Query: 117 SKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDR 173
S+ +VV + +P + ++ S G+ F + +NPEFL E TAI+D P
Sbjct: 114 SERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPM 173
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233
+IG + G L+++Y + I+ + AE+ K N + A +++ N +
Sbjct: 174 TVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227
Query: 234 SALCEATGANVSQVAFAVGTDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPE 291
+ +A G + +V + D ++ ++ FGGSC KD+ L Y + L
Sbjct: 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTY--RASQLDV 285
Query: 292 VAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCK 351
+++ N Q + + + + +K+ +LG +FK T D RE+P +++ +
Sbjct: 286 EHPMLGSLMRSNSNQVQKAFD-----LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAE 340
Query: 352 GLLGDKARLSIYDPQV 367
L+G L I+D V
Sbjct: 341 MLIGKGYELRIFDRNV 356
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 30/375 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q R
Sbjct: 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 63 GKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVS 117
L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I + S
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKS 114
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRV 174
+ +VV + +P + ++ S G+ F + +NPEFL E TAI+D P
Sbjct: 115 ERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPXT 174
Query: 175 LIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
+IG + G L+++Y + I+ + AE K N + A +++ N +
Sbjct: 175 VIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEXIKYTCNVWHAAKVTFANEIG 228
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+ +A G + +V + D ++ + FGGSC KD+ L Y + L
Sbjct: 229 NIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSCLPKDVRALTY--RASQLDVE 286
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKG 352
+ + N Q + + + + +K+ +LG +FK T D RE+P +++ +
Sbjct: 287 HPXLGSLXRSNSNQVQKAFD-----LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEX 341
Query: 353 LLGDKARLSIYDPQV 367
L+G L I+D V
Sbjct: 342 LIGKGYELRIFDRNV 356
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 123/493 (24%), Positives = 211/493 (42%), Gaps = 70/493 (14%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAV-----VDISVSRINAWNSDQLPIY--EPGLD 55
KI +G GYVG P AV+ P E + S +I N + P+ EPGL+
Sbjct: 20 KIGVLGMGYVGIPA-AVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLE 78
Query: 56 GVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD 115
++ + F T +SE D V +++ TP D + R +
Sbjct: 79 ELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANP---KDLEPDFSALIDGIRNVGK 135
Query: 116 VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK----FQILSNPEFLAEGTAIQDLFNP 171
K +VV +ST+ T E + K + G+K F + PE + G ++++
Sbjct: 136 YLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREH 195
Query: 172 DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231
DR+ +GG + ++AV ++Y+ + +++ + +AE++K A N F +I+++N
Sbjct: 196 DRI-VGGIDEASTKRAV----ELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250
Query: 232 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNA----SVGFGGSCFQKDILNLVYICECN 287
++ CEA G NV V G DS G A G GG C KD +L +
Sbjct: 251 QLALYCEAMGINVYDV--RTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 ----GLPEVAE-YWKQVIKINDYQKSRFVNRVVAS---MFNTVSNKKIAVLGFAFKKDTG 339
PE A+ + K+ND+ + N VA+ + + K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPA---IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396
D R TP+ D+C L A + ++DP V ++P
Sbjct: 369 DARNTPSEPYRDLC---LKAGASVMVHDPYVV---------------NYP---------- 400
Query: 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTL--DYQRIYDNMQKPAFVFDGRNVVDANK 454
V + + E ++A + +L + +L D+ + P + DGRNV++ ++
Sbjct: 401 --GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANP-VIIDGRNVIEPDE 457
Query: 455 LREIGFIVYSIGK 467
GF+ IG+
Sbjct: 458 FIGKGFVYKGIGR 470
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/458 (25%), Positives = 199/458 (43%), Gaps = 64/458 (13%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC- 61
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL V ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 62 -RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
GK L ST E +D+ ++V TP ++ D++ A I K
Sbjct: 71 SSGK-LKVSTTPEA----SDVFIIAVPTPNNDDQY---RSCDISLVMRALDSILPFLKKG 122
Query: 121 KIVVEKSTVPVKTAEAIEKILTHN---SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
++ +ST+ KT + K + N + G ++ PE + G +++L + +R+ IG
Sbjct: 123 NTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IG 181
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237
G + ++A K VY +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 182 GVT----KACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236
Query: 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297
NV V R+ G GG C D ++ PE A+ +
Sbjct: 237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIA-----KDPENAKLIQ 289
Query: 298 QVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK 357
+IN+ + V+ + +S K+ V G +K D D RE+PA D+ + LL +
Sbjct: 290 TGREINNSMPAYVVD-TTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYE-LLNQE 347
Query: 358 ARLSI--YDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHG 415
+ + YDP V D ++ D++ A KDA
Sbjct: 348 PDIEVCAYDPHVELDFVEHDMS------------------------------HAVKDASL 377
Query: 416 VCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453
V IL++ EFK L +D M K +FD +NVV ++
Sbjct: 378 VLILSDHSEFKNLSDSH-FDKM-KHKVIFDTKNVVKSS 413
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 173/394 (43%), Gaps = 42/394 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RVIADVSK 118
K L F +KH + + +V + TPT Y+ ++ VI DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
+ +++ KST+PV I++ L GI I S PEFL EG A+ D +P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAVKALKD-VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P L T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
E+ G N Q+ V D RIG + N S G+GG C KD L + +P
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYESVPN--NI 308
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
++ N +K + ++A K + V K + + R + + K +
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKARLSIYDPQVTEDQ-----IQRDLTMNKFDWD 384
+ IY+P + ED+ + RDL K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 173/394 (43%), Gaps = 42/394 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RVIADVSK 118
K L F +KH + + +V + TPT Y+ ++ VI DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
+ +++ KST+PV I++ L GI I S PEFL EG A+ D +P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAVKALKD-VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P L T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
E+ G N Q+ V D RIG + N S G+GG C KD L + +P
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYESVPN--NI 308
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355
++ N +K + ++A K + V K + + R + + K +
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKARLSIYDPQVTEDQ-----IQRDLTMNKFDWD 384
+ IY+P + ED+ + RDL K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 176/387 (45%), Gaps = 44/387 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ ++ + D + EA++V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQ---ILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+++ KST+P+ + + KFQ I+ +PEFL E A+ D P R+++
Sbjct: 113 LII-KSTIPIGFITEMRQ---------KFQTDRIIFSPEFLRESKALYDNLYPSRIIVSC 162
Query: 179 RETPEGQKAVKALKDVYA---------HWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
E + VKA + +A + VP +L AE KL AN +LA R++
Sbjct: 163 EENDSPK--VKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAY 217
Query: 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289
N + E+ N + + D RIG + N S G+GG C KD L + N +
Sbjct: 218 FNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNI 275
Query: 290 PEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAID 348
P+ + ++ N+ +KS +++ + S K + V K ++ + RE+ D
Sbjct: 276 PQTL--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 333
Query: 349 VCKGLLGDKARLSIYDPQV----TEDQ 371
V L ++ IY+P + +EDQ
Sbjct: 334 VIDILKSKDIKIIIYEPMLNKLESEDQ 360
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 175/387 (45%), Gaps = 44/387 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ ++ + D + EA++V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQ---ILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+++ KST+P+ + + KFQ I+ +PEFL E A+ D P R+++
Sbjct: 113 LII-KSTIPIGFITEMRQ---------KFQTDRIIFSPEFLRESKALYDNLYPSRIIVSC 162
Query: 179 RETPEGQKAVKALKDVYA---------HWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
E + VKA + +A + VP +L AE KL AN +LA R++
Sbjct: 163 EENDSPK--VKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAY 217
Query: 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289
N + E+ N + + D RIG + N S G+GG KD L + N +
Sbjct: 218 FNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNI 275
Query: 290 PEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAID 348
P+ + ++ N+ +KS +++ + S K + V K ++ + RE+ D
Sbjct: 276 PQTL--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 333
Query: 349 VCKGLLGDKARLSIYDPQV----TEDQ 371
V L ++ IY+P + +EDQ
Sbjct: 334 VIDILKSKDIKIIIYEPMLNKLESEDQ 360
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGV 57
VK+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VKQCRGKNLFFSTDVEKHVSEADIVFVSV 86
+ + + + D E +S AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGV 57
VK+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VKQCRGKNLFFSTDVEKHVSEADIVFVSV 86
+ + + + D E +S AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 358 ARLSIYDPQVTEDQIQRDLTMNKFDWDHPL----HLQPMSPTMVKQVSVVW 404
A +++Y P + D I LT DWD P+ H QP SPT + + VVW
Sbjct: 154 AIVTLYLPAL--DGIIGSLTSKLVDWDVPMLARTHGQPASPTNLAKEFVVW 202
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 15 PTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-----IYEP---GLDGVVKQCRGKNL 66
P M V A+ P ++VAV + +I+ + LP I+ P GLDG K K
Sbjct: 152 PIMQVNAIHYPGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGN 211
Query: 67 FFSTD 71
F + D
Sbjct: 212 FIAVD 216
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 111 RVIADVSKSDK-----IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSN----PEFLAE 161
RVI D++ + + + TV K +A+E L G + + + N FLAE
Sbjct: 97 RVILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAE 156
Query: 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALK 192
I F+ DR+LI G + + Q+ + L+
Sbjct: 157 WQNITKGFSEDRLLIAGTNSSDLQQILSLLE 187
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 111 RVIADVSKSDK-----IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSN----PEFLAE 161
RVI D++ + + + TV K +A+E L G + + + N FLAE
Sbjct: 97 RVILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAE 156
Query: 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALK 192
I F+ DR+LI G + + Q+ + L+
Sbjct: 157 WQNITKGFSEDRLLIAGTNSSDLQQILSLLE 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,140,293
Number of Sequences: 62578
Number of extensions: 578559
Number of successful extensions: 1690
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 30
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)