Query 011641
Match_columns 480
No_of_seqs 334 out of 3085
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02353 probable UDP-glucose 100.0 2E-101 4E-106 804.0 56.3 473 1-473 1-473 (473)
2 KOG2666 UDP-glucose/GDP-mannos 100.0 8.5E-97 2E-101 696.4 41.9 480 1-480 1-481 (481)
3 COG1004 Ugd Predicted UDP-gluc 100.0 2.1E-95 5E-100 716.3 44.9 412 2-453 1-414 (414)
4 COG0677 WecC UDP-N-acetyl-D-ma 100.0 7.6E-94 1.6E-98 701.3 38.9 418 2-467 10-435 (436)
5 PRK15182 Vi polysaccharide bio 100.0 6.1E-82 1.3E-86 653.1 47.7 407 1-453 6-419 (425)
6 TIGR03026 NDP-sugDHase nucleot 100.0 1.9E-79 4.1E-84 636.9 48.9 406 2-448 1-411 (411)
7 PRK11064 wecC UDP-N-acetyl-D-m 100.0 4.5E-78 9.7E-83 624.6 46.0 394 1-446 3-415 (415)
8 PRK15057 UDP-glucose 6-dehydro 100.0 2.6E-78 5.6E-83 619.1 43.4 374 2-429 1-376 (388)
9 PF03721 UDPG_MGDP_dh_N: UDP-g 100.0 1.2E-37 2.5E-42 288.0 18.7 182 2-194 1-185 (185)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 5.6E-31 1.2E-35 255.5 26.2 248 2-299 1-261 (286)
11 PLN02858 fructose-bisphosphate 100.0 2.2E-29 4.8E-34 291.1 40.4 382 2-464 5-443 (1378)
12 PRK15461 NADH-dependent gamma- 100.0 2.7E-28 5.7E-33 242.8 25.1 252 1-299 1-262 (296)
13 PRK11559 garR tartronate semia 100.0 6.4E-28 1.4E-32 240.4 27.0 250 1-300 2-263 (296)
14 TIGR01505 tartro_sem_red 2-hyd 100.0 5.8E-28 1.3E-32 240.1 26.4 248 3-300 1-260 (291)
15 TIGR01692 HIBADH 3-hydroxyisob 100.0 3.3E-27 7.1E-32 234.3 25.9 245 6-300 1-264 (288)
16 PRK15059 tartronate semialdehy 100.0 5.1E-27 1.1E-31 232.7 26.4 246 2-298 1-258 (292)
17 KOG0409 Predicted dehydrogenas 100.0 4.9E-27 1.1E-31 223.5 22.8 241 2-290 36-289 (327)
18 PF03720 UDPG_MGDP_dh_C: UDP-g 99.9 1E-26 2.2E-31 195.8 11.1 106 328-452 1-106 (106)
19 PRK12490 6-phosphogluconate de 99.9 2E-24 4.4E-29 215.3 27.5 249 2-300 1-267 (299)
20 PLN02350 phosphogluconate dehy 99.9 2.2E-24 4.7E-29 225.7 28.5 252 1-295 6-285 (493)
21 PLN02858 fructose-bisphosphate 99.9 1.2E-24 2.7E-29 251.9 28.8 252 1-300 324-588 (1378)
22 PF00984 UDPG_MGDP_dh: UDP-glu 99.9 4.1E-26 8.8E-31 187.1 11.8 96 209-306 1-96 (96)
23 PRK00094 gpsA NAD(P)H-dependen 99.9 3E-23 6.5E-28 209.3 24.1 281 1-315 1-323 (325)
24 PRK09599 6-phosphogluconate de 99.9 1.1E-22 2.4E-27 203.0 27.7 267 2-318 1-292 (301)
25 TIGR00872 gnd_rel 6-phosphoglu 99.9 4.5E-21 9.8E-26 191.1 27.1 265 2-317 1-289 (298)
26 PTZ00142 6-phosphogluconate de 99.9 1.8E-21 3.9E-26 203.6 24.4 210 1-252 1-219 (470)
27 COG0240 GpsA Glycerol-3-phosph 99.9 3E-20 6.6E-25 182.2 21.3 220 1-253 1-240 (329)
28 PF03446 NAD_binding_2: NAD bi 99.9 1.1E-20 2.4E-25 171.7 14.9 153 1-200 1-155 (163)
29 TIGR00873 gnd 6-phosphoglucona 99.8 7.8E-20 1.7E-24 191.4 22.5 206 3-251 1-215 (467)
30 PRK14618 NAD(P)H-dependent gly 99.8 2.7E-19 5.8E-24 180.9 23.2 275 1-315 4-321 (328)
31 PRK06129 3-hydroxyacyl-CoA deh 99.8 2.5E-17 5.5E-22 165.0 26.4 247 1-290 2-265 (308)
32 PRK09287 6-phosphogluconate de 99.8 1E-17 2.2E-22 174.9 22.5 197 12-251 1-207 (459)
33 PRK14619 NAD(P)H-dependent gly 99.8 1.2E-17 2.6E-22 167.4 21.0 251 2-316 5-300 (308)
34 PRK12439 NAD(P)H-dependent gly 99.8 1.6E-17 3.6E-22 168.5 21.7 220 1-253 7-246 (341)
35 PRK12557 H(2)-dependent methyl 99.8 3.4E-17 7.3E-22 165.2 23.4 257 2-303 1-288 (342)
36 PRK08229 2-dehydropantoate 2-r 99.8 4.7E-17 1E-21 165.4 21.8 261 1-297 2-307 (341)
37 TIGR03376 glycerol3P_DH glycer 99.8 4.6E-17 1E-21 164.0 20.3 217 3-253 1-258 (342)
38 PTZ00345 glycerol-3-phosphate 99.8 5.1E-17 1.1E-21 164.8 20.6 219 2-254 12-268 (365)
39 PRK14620 NAD(P)H-dependent gly 99.7 1.2E-15 2.6E-20 154.2 26.4 215 2-248 1-238 (326)
40 PRK09260 3-hydroxybutyryl-CoA 99.7 1.1E-16 2.3E-21 159.0 16.5 214 1-254 1-220 (288)
41 PRK07531 bifunctional 3-hydrox 99.7 5.9E-16 1.3E-20 164.5 22.5 207 1-255 4-221 (495)
42 COG1023 Gnd Predicted 6-phosph 99.7 4.7E-15 1E-19 137.2 24.5 210 2-259 1-217 (300)
43 PRK07066 3-hydroxybutyryl-CoA 99.7 8.1E-16 1.8E-20 153.6 20.2 211 1-255 7-224 (321)
44 PRK07417 arogenate dehydrogena 99.7 3.1E-15 6.6E-20 147.9 21.2 187 2-233 1-192 (279)
45 PRK08507 prephenate dehydrogen 99.7 1.1E-14 2.5E-19 143.5 24.3 201 2-252 1-207 (275)
46 PRK12921 2-dehydropantoate 2-r 99.7 8.6E-15 1.9E-19 146.4 23.6 212 2-244 1-234 (305)
47 PLN02712 arogenate dehydrogena 99.7 3.3E-13 7.2E-18 147.4 37.6 164 2-210 53-221 (667)
48 PRK08268 3-hydroxy-acyl-CoA de 99.7 5.9E-15 1.3E-19 156.8 21.2 202 2-254 8-225 (507)
49 PRK08293 3-hydroxybutyryl-CoA 99.6 2.5E-14 5.5E-19 141.9 22.0 214 1-254 3-224 (287)
50 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 1E-15 2.2E-20 138.2 10.7 150 3-179 1-152 (157)
51 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.6 2.1E-14 4.6E-19 152.2 21.8 204 1-254 5-223 (503)
52 PRK06130 3-hydroxybutyryl-CoA 99.6 5.9E-14 1.3E-18 140.9 22.6 210 1-254 4-219 (311)
53 PRK07530 3-hydroxybutyryl-CoA 99.6 4.9E-14 1.1E-18 140.2 21.6 207 2-254 5-222 (292)
54 PRK08655 prephenate dehydrogen 99.6 4E-13 8.6E-18 140.6 28.3 202 2-252 1-203 (437)
55 PRK06035 3-hydroxyacyl-CoA deh 99.6 9.1E-14 2E-18 138.3 20.7 205 2-253 4-223 (291)
56 PRK05808 3-hydroxybutyryl-CoA 99.6 1.7E-13 3.6E-18 135.7 21.9 205 1-254 3-221 (282)
57 PRK07819 3-hydroxybutyryl-CoA 99.6 9.2E-14 2E-18 137.6 20.0 203 2-254 6-225 (286)
58 PLN02545 3-hydroxybutyryl-CoA 99.6 4.2E-13 9.2E-18 133.7 22.0 208 1-254 4-222 (295)
59 PRK06522 2-dehydropantoate 2-r 99.5 5.8E-13 1.2E-17 133.1 20.2 209 2-244 1-231 (304)
60 PRK11199 tyrA bifunctional cho 99.5 1.5E-12 3.2E-17 133.8 23.5 224 1-318 98-324 (374)
61 COG1250 FadB 3-hydroxyacyl-CoA 99.5 5.8E-13 1.2E-17 131.2 18.1 206 1-254 3-221 (307)
62 TIGR01724 hmd_rel H2-forming N 99.5 3.2E-12 7E-17 124.8 21.5 254 2-305 1-290 (341)
63 PLN02688 pyrroline-5-carboxyla 99.5 3.3E-12 7.1E-17 125.4 21.5 195 2-253 1-203 (266)
64 COG0362 Gnd 6-phosphogluconate 99.5 1.7E-12 3.7E-17 128.3 18.4 207 2-252 4-220 (473)
65 PRK07502 cyclohexadienyl dehyd 99.5 7.7E-12 1.7E-16 125.4 22.8 166 2-208 7-178 (307)
66 PRK06249 2-dehydropantoate 2-r 99.5 7.8E-12 1.7E-16 125.7 22.8 257 1-290 5-294 (313)
67 PRK11730 fadB multifunctional 99.5 1.8E-12 3.8E-17 143.4 19.4 204 1-253 313-529 (715)
68 TIGR02437 FadB fatty oxidation 99.4 3.8E-12 8.2E-17 140.6 18.9 205 1-254 313-530 (714)
69 PRK06545 prephenate dehydrogen 99.4 1.6E-11 3.5E-16 125.6 21.8 168 2-209 1-174 (359)
70 TIGR02441 fa_ox_alpha_mit fatt 99.4 3.9E-12 8.4E-17 140.8 17.9 202 1-251 335-549 (737)
71 TIGR02440 FadJ fatty oxidation 99.4 6.8E-12 1.5E-16 138.5 19.4 204 1-252 304-520 (699)
72 PRK12491 pyrroline-5-carboxyla 99.4 2E-11 4.3E-16 120.0 20.2 202 2-253 3-206 (272)
73 PRK11880 pyrroline-5-carboxyla 99.4 3.5E-11 7.6E-16 118.1 21.8 198 1-253 2-204 (267)
74 PRK07679 pyrroline-5-carboxyla 99.4 1.9E-11 4E-16 120.9 19.7 195 2-253 4-208 (279)
75 PF02737 3HCDH_N: 3-hydroxyacy 99.4 1.4E-12 3.1E-17 120.2 10.9 169 3-207 1-178 (180)
76 COG0287 TyrA Prephenate dehydr 99.4 1.7E-10 3.7E-15 113.1 25.8 168 1-211 3-173 (279)
77 PRK11154 fadJ multifunctional 99.4 1.3E-11 2.8E-16 136.6 20.0 203 1-252 309-525 (708)
78 PRK06476 pyrroline-5-carboxyla 99.3 9.5E-11 2.1E-15 114.5 19.7 186 2-252 1-194 (258)
79 PLN02256 arogenate dehydrogena 99.3 5.3E-10 1.2E-14 111.5 23.8 166 1-211 36-206 (304)
80 PRK07680 late competence prote 99.3 1.7E-10 3.8E-15 113.7 20.1 197 2-252 1-203 (273)
81 PRK08269 3-hydroxybutyryl-CoA 99.3 1.4E-10 3.1E-15 116.2 18.9 197 12-254 1-218 (314)
82 PRK14806 bifunctional cyclohex 99.3 1.7E-10 3.7E-15 129.1 21.6 169 2-210 4-178 (735)
83 COG1893 ApbA Ketopantoate redu 99.3 3.4E-10 7.3E-15 113.1 20.6 209 2-242 1-231 (307)
84 PRK08818 prephenate dehydrogen 99.3 8.3E-10 1.8E-14 112.4 23.6 231 2-318 5-240 (370)
85 PRK05708 2-dehydropantoate 2-r 99.3 8.5E-11 1.8E-15 117.7 15.8 207 2-243 3-229 (305)
86 KOG2653 6-phosphogluconate deh 99.3 1.4E-10 3E-15 113.1 16.1 207 2-252 7-224 (487)
87 PRK06928 pyrroline-5-carboxyla 99.2 7.1E-10 1.5E-14 109.5 18.8 199 1-252 1-206 (277)
88 PLN02712 arogenate dehydrogena 99.2 4.1E-09 8.8E-14 115.5 26.4 163 2-211 370-539 (667)
89 COG0345 ProC Pyrroline-5-carbo 99.2 1.2E-09 2.5E-14 105.9 18.3 201 1-253 1-203 (266)
90 PRK07634 pyrroline-5-carboxyla 99.2 2.6E-09 5.6E-14 103.4 20.8 196 2-252 5-207 (245)
91 PF03807 F420_oxidored: NADP o 99.1 2.6E-10 5.6E-15 93.9 9.2 87 3-125 1-92 (96)
92 PF02153 PDH: Prephenate dehyd 99.1 9.5E-09 2.1E-13 100.4 21.7 183 16-234 1-184 (258)
93 TIGR01915 npdG NADPH-dependent 99.1 5E-09 1.1E-13 99.9 19.2 99 2-127 1-101 (219)
94 PTZ00431 pyrroline carboxylate 99.1 3.5E-09 7.6E-14 103.6 18.2 194 2-253 4-199 (260)
95 KOG2304 3-hydroxyacyl-CoA dehy 99.1 2.9E-10 6.4E-15 104.7 9.1 212 1-255 11-236 (298)
96 TIGR00745 apbA_panE 2-dehydrop 99.1 4E-09 8.6E-14 104.7 16.5 202 11-244 1-224 (293)
97 TIGR01763 MalateDH_bact malate 99.0 2.2E-09 4.8E-14 107.3 11.8 120 2-136 2-126 (305)
98 COG2085 Predicted dinucleotide 99.0 1.6E-08 3.4E-13 93.7 15.6 167 1-212 1-184 (211)
99 PF10727 Rossmann-like: Rossma 99.0 1.4E-09 3E-14 94.0 6.7 93 2-129 11-106 (127)
100 PRK05479 ketol-acid reductoiso 98.9 8.2E-08 1.8E-12 96.1 19.0 151 2-200 18-174 (330)
101 KOG2305 3-hydroxyacyl-CoA dehy 98.9 2.4E-08 5.1E-13 92.3 13.7 208 2-254 4-224 (313)
102 KOG2711 Glycerol-3-phosphate d 98.9 7.5E-08 1.6E-12 94.3 15.7 190 2-221 22-229 (372)
103 PRK12480 D-lactate dehydrogena 98.8 1E-07 2.3E-12 96.2 15.6 105 2-144 147-251 (330)
104 PRK06223 malate dehydrogenase; 98.8 3.4E-08 7.3E-13 99.1 11.7 122 1-134 2-125 (307)
105 COG4007 Predicted dehydrogenas 98.8 7.8E-07 1.7E-11 83.8 18.7 248 1-290 1-276 (340)
106 cd05294 LDH-like_MDH_nadp A la 98.7 4.3E-08 9.4E-13 98.2 9.8 120 2-133 1-128 (309)
107 PRK07574 formate dehydrogenase 98.7 3.6E-07 7.8E-12 93.8 14.1 109 2-144 193-301 (385)
108 PLN03139 formate dehydrogenase 98.7 4E-07 8.7E-12 93.4 14.2 109 2-144 200-308 (386)
109 PRK13243 glyoxylate reductase; 98.6 4.5E-07 9.9E-12 91.8 14.3 107 2-144 151-257 (333)
110 PRK08605 D-lactate dehydrogena 98.6 1.6E-07 3.6E-12 95.0 10.9 107 2-144 147-253 (332)
111 TIGR00465 ilvC ketol-acid redu 98.6 5.4E-06 1.2E-10 83.1 20.2 151 2-200 4-160 (314)
112 cd01065 NAD_bind_Shikimate_DH 98.6 2.2E-07 4.8E-12 83.2 8.4 111 2-144 20-131 (155)
113 PRK13403 ketol-acid reductoiso 98.6 3.6E-07 7.9E-12 90.4 10.3 90 2-128 17-107 (335)
114 cd05292 LDH_2 A subgroup of L- 98.6 1.2E-06 2.6E-11 87.8 14.3 110 2-133 1-121 (308)
115 PF02558 ApbA: Ketopantoate re 98.5 1.1E-07 2.4E-12 84.9 6.0 114 4-141 1-114 (151)
116 PRK13304 L-aspartate dehydroge 98.5 7.9E-07 1.7E-11 87.2 11.9 69 1-87 1-70 (265)
117 PF00056 Ldh_1_N: lactate/mala 98.5 1.6E-06 3.5E-11 76.7 12.4 120 2-135 1-125 (141)
118 PRK06436 glycerate dehydrogena 98.5 8E-07 1.7E-11 88.6 11.5 104 2-144 123-226 (303)
119 cd01339 LDH-like_MDH L-lactate 98.5 1.2E-06 2.6E-11 87.6 12.8 117 4-133 1-120 (300)
120 PRK13302 putative L-aspartate 98.5 1.3E-06 2.7E-11 86.0 12.1 114 2-152 7-121 (271)
121 PRK06444 prephenate dehydrogen 98.5 5.6E-05 1.2E-09 70.6 22.3 191 2-319 1-193 (197)
122 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 1.2E-05 2.6E-10 75.5 16.8 41 2-44 29-69 (200)
123 COG0111 SerA Phosphoglycerate 98.4 4.7E-06 1E-10 83.8 13.6 132 2-175 143-278 (324)
124 PF01408 GFO_IDH_MocA: Oxidore 98.4 3.9E-06 8.5E-11 71.7 11.1 70 2-89 1-73 (120)
125 PRK13581 D-3-phosphoglycerate 98.4 6.8E-06 1.5E-10 88.3 15.2 107 2-144 141-247 (526)
126 cd00300 LDH_like L-lactate deh 98.4 4.5E-06 9.7E-11 83.4 12.9 115 4-135 1-122 (300)
127 PF02826 2-Hacid_dh_C: D-isome 98.4 7.3E-06 1.6E-10 75.5 13.3 108 2-144 37-144 (178)
128 TIGR01327 PGDH D-3-phosphoglyc 98.4 7.8E-06 1.7E-10 87.9 15.3 108 2-144 139-246 (525)
129 PF14833 NAD_binding_11: NAD-b 98.3 2.5E-06 5.4E-11 73.5 8.8 89 210-300 1-99 (122)
130 cd05291 HicDH_like L-2-hydroxy 98.3 1.1E-05 2.4E-10 80.9 14.4 116 2-135 1-124 (306)
131 KOG2380 Prephenate dehydrogena 98.3 1.4E-05 3E-10 78.3 14.4 193 2-242 53-251 (480)
132 PRK15469 ghrA bifunctional gly 98.3 2.7E-06 5.8E-11 85.3 9.8 107 2-144 137-243 (312)
133 cd05293 LDH_1 A subgroup of L- 98.3 6.7E-06 1.5E-10 82.5 12.4 118 2-133 4-125 (312)
134 TIGR02853 spore_dpaA dipicolin 98.3 3.9E-06 8.4E-11 83.2 10.2 96 2-134 152-247 (287)
135 cd05297 GH4_alpha_glucosidase_ 98.3 7.3E-06 1.6E-10 85.8 12.4 81 2-90 1-86 (423)
136 TIGR00112 proC pyrroline-5-car 98.3 4.4E-05 9.6E-10 74.0 16.6 176 26-253 9-186 (245)
137 PTZ00082 L-lactate dehydrogena 98.2 8.5E-06 1.8E-10 82.1 11.0 111 2-123 7-125 (321)
138 PRK15076 alpha-galactosidase; 98.2 1.9E-05 4E-10 82.7 12.8 81 1-89 1-86 (431)
139 PF07991 IlvN: Acetohydroxy ac 98.2 1.4E-05 3.1E-10 71.2 9.9 89 2-127 5-95 (165)
140 PLN02928 oxidoreductase family 98.2 2.4E-05 5.2E-10 79.7 13.0 120 2-144 160-279 (347)
141 cd00650 LDH_MDH_like NAD-depen 98.1 2.2E-05 4.8E-10 76.9 12.0 122 4-136 1-127 (263)
142 PRK14194 bifunctional 5,10-met 98.1 7.3E-06 1.6E-10 80.9 8.4 73 2-129 160-233 (301)
143 PRK00257 erythronate-4-phospha 98.1 1.2E-05 2.7E-10 82.4 10.3 108 2-144 117-224 (381)
144 PRK11790 D-3-phosphoglycerate 98.1 3.5E-05 7.7E-10 80.2 13.8 105 2-144 152-256 (409)
145 PTZ00117 malate dehydrogenase; 98.1 1.7E-05 3.7E-10 79.9 11.1 116 2-133 6-127 (319)
146 PRK08410 2-hydroxyacid dehydro 98.1 5E-05 1.1E-09 76.2 14.1 103 2-143 146-248 (311)
147 PRK08306 dipicolinate synthase 98.1 2.7E-05 6E-10 77.6 12.0 95 2-133 153-247 (296)
148 PRK15409 bifunctional glyoxyla 98.1 6.3E-05 1.4E-09 75.9 14.0 107 2-144 146-253 (323)
149 cd05290 LDH_3 A subgroup of L- 98.1 4.3E-05 9.3E-10 76.5 12.3 118 3-137 1-128 (307)
150 COG1052 LdhA Lactate dehydroge 98.1 8.9E-05 1.9E-09 74.6 14.5 107 2-144 147-253 (324)
151 PLN02602 lactate dehydrogenase 98.0 5.2E-05 1.1E-09 77.1 12.8 120 2-136 38-162 (350)
152 PRK00066 ldh L-lactate dehydro 98.0 8.6E-05 1.9E-09 74.7 13.2 114 2-134 7-128 (315)
153 TIGR02371 ala_DH_arch alanine 98.0 4E-05 8.6E-10 77.5 10.2 100 2-133 129-228 (325)
154 COG0039 Mdh Malate/lactate deh 97.9 8.4E-05 1.8E-09 73.8 11.7 121 2-137 1-127 (313)
155 PRK15438 erythronate-4-phospha 97.9 5E-05 1.1E-09 77.8 10.2 108 2-144 117-224 (378)
156 COG1748 LYS9 Saccharopine dehy 97.9 8.9E-05 1.9E-09 75.7 11.6 114 1-139 1-135 (389)
157 PRK06141 ornithine cyclodeamin 97.9 5.6E-05 1.2E-09 76.0 10.1 75 2-89 126-200 (314)
158 PF01113 DapB_N: Dihydrodipico 97.9 0.00014 3E-09 62.9 10.9 73 2-86 1-75 (124)
159 PLN02306 hydroxypyruvate reduc 97.9 0.00038 8.3E-09 71.8 15.6 121 2-143 166-288 (386)
160 PRK06932 glycerate dehydrogena 97.9 0.00015 3.2E-09 73.0 12.3 103 2-144 148-250 (314)
161 PRK14188 bifunctional 5,10-met 97.9 4.5E-05 9.8E-10 75.4 8.1 71 2-128 159-231 (296)
162 PRK00048 dihydrodipicolinate r 97.8 9.8E-05 2.1E-09 72.1 10.2 67 1-87 1-69 (257)
163 cd05213 NAD_bind_Glutamyl_tRNA 97.8 9.8E-05 2.1E-09 74.2 10.4 71 2-89 179-249 (311)
164 PRK06487 glycerate dehydrogena 97.8 0.00023 5E-09 71.7 12.9 102 2-144 149-250 (317)
165 cd01338 MDH_choloroplast_like 97.8 0.00015 3.3E-09 73.0 10.7 118 2-135 3-135 (322)
166 TIGR00507 aroE shikimate 5-deh 97.8 0.00019 4E-09 70.7 11.0 111 2-143 118-228 (270)
167 TIGR00036 dapB dihydrodipicoli 97.8 0.00017 3.6E-09 70.8 10.6 74 1-87 1-77 (266)
168 PF10100 DUF2338: Uncharacteri 97.8 0.0031 6.8E-08 63.9 19.4 231 1-254 1-283 (429)
169 TIGR01759 MalateDH-SF1 malate 97.8 0.00035 7.6E-09 70.4 12.8 119 2-136 4-137 (323)
170 PRK13303 L-aspartate dehydroge 97.7 0.00017 3.6E-09 70.8 10.2 70 1-88 1-71 (265)
171 PF02826 2-Hacid_dh_C: D-isome 97.7 0.0002 4.4E-09 65.9 9.4 104 319-456 31-138 (178)
172 COG0569 TrkA K+ transport syst 97.7 0.00015 3.2E-09 69.4 8.6 41 2-44 1-41 (225)
173 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00056 1.2E-08 61.4 11.7 91 2-132 24-115 (162)
174 PF03446 NAD_binding_2: NAD bi 97.7 0.00011 2.4E-09 66.6 7.4 108 325-465 2-118 (163)
175 PRK14179 bifunctional 5,10-met 97.7 0.0001 2.2E-09 72.3 7.5 73 2-129 159-232 (284)
176 cd01337 MDH_glyoxysomal_mitoch 97.7 0.0003 6.5E-09 70.4 11.1 113 2-133 1-122 (310)
177 COG1712 Predicted dinucleotide 97.7 0.00038 8.2E-09 65.0 10.7 67 2-86 1-68 (255)
178 PRK05442 malate dehydrogenase; 97.7 0.00039 8.5E-09 70.1 11.7 122 1-136 4-138 (326)
179 TIGR00936 ahcY adenosylhomocys 97.6 0.00042 9.2E-09 71.6 11.4 89 2-130 196-285 (406)
180 PF01488 Shikimate_DH: Shikima 97.6 0.0002 4.4E-09 62.8 7.8 71 2-89 13-86 (135)
181 PRK07340 ornithine cyclodeamin 97.6 0.00031 6.8E-09 70.3 10.0 100 2-135 126-225 (304)
182 PTZ00075 Adenosylhomocysteinas 97.6 0.0003 6.5E-09 73.6 9.9 89 2-129 255-343 (476)
183 PRK08618 ornithine cyclodeamin 97.6 0.00041 9E-09 70.1 10.7 101 2-134 128-228 (325)
184 PRK05476 S-adenosyl-L-homocyst 97.6 0.00056 1.2E-08 71.1 11.5 89 2-130 213-302 (425)
185 COG0111 SerA Phosphoglycerate 97.6 0.00029 6.2E-09 71.0 8.9 102 321-456 139-244 (324)
186 PTZ00325 malate dehydrogenase; 97.6 0.00074 1.6E-08 67.9 11.7 116 1-137 8-134 (321)
187 PRK04148 hypothetical protein; 97.5 0.00065 1.4E-08 59.1 9.6 91 2-124 18-108 (134)
188 PF01118 Semialdhyde_dh: Semia 97.5 0.00013 2.8E-09 62.8 5.1 95 3-128 1-98 (121)
189 TIGR00518 alaDH alanine dehydr 97.5 0.00048 1E-08 70.9 10.2 106 3-135 169-275 (370)
190 smart00859 Semialdhyde_dh Semi 97.5 0.00034 7.4E-09 60.0 7.7 98 3-129 1-101 (122)
191 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00076 1.7E-08 69.9 11.6 87 2-128 203-290 (413)
192 PRK04207 glyceraldehyde-3-phos 97.5 0.00072 1.6E-08 68.8 10.9 86 1-88 1-88 (341)
193 PRK06407 ornithine cyclodeamin 97.5 0.00092 2E-08 66.8 11.4 101 2-133 118-218 (301)
194 TIGR01035 hemA glutamyl-tRNA r 97.5 0.0007 1.5E-08 70.9 11.0 71 2-90 181-252 (417)
195 TIGR01757 Malate-DH_plant mala 97.5 0.0019 4.2E-08 66.4 13.9 121 2-136 45-178 (387)
196 PRK02318 mannitol-1-phosphate 97.5 0.0008 1.7E-08 69.6 11.2 44 2-47 1-45 (381)
197 TIGR01921 DAP-DH diaminopimela 97.5 0.00072 1.6E-08 67.6 10.4 66 2-89 4-71 (324)
198 PRK05086 malate dehydrogenase; 97.5 0.0012 2.5E-08 66.4 11.9 116 2-136 1-126 (312)
199 PLN02819 lysine-ketoglutarate 97.5 0.00078 1.7E-08 77.0 11.7 75 1-90 569-660 (1042)
200 PRK11579 putative oxidoreducta 97.5 0.0012 2.7E-08 67.2 12.1 68 2-90 5-76 (346)
201 KOG0069 Glyoxylate/hydroxypyru 97.4 0.0028 6E-08 63.5 13.9 107 2-144 163-270 (336)
202 PLN00112 malate dehydrogenase 97.4 0.0023 4.9E-08 66.9 13.7 121 2-136 101-234 (444)
203 cd00704 MDH Malate dehydrogena 97.4 0.00095 2.1E-08 67.3 10.6 120 2-134 1-132 (323)
204 PLN02494 adenosylhomocysteinas 97.4 0.00082 1.8E-08 70.3 10.3 88 2-129 255-343 (477)
205 COG0673 MviM Predicted dehydro 97.4 0.00089 1.9E-08 67.8 10.6 71 1-90 3-79 (342)
206 PRK06823 ornithine cyclodeamin 97.4 0.0011 2.3E-08 66.7 10.7 100 2-133 129-228 (315)
207 PRK05225 ketol-acid reductoiso 97.4 0.00037 8E-09 72.0 7.4 89 2-127 37-131 (487)
208 PRK06046 alanine dehydrogenase 97.4 0.0018 3.9E-08 65.6 11.9 101 2-134 130-230 (326)
209 PRK08291 ectoine utilization p 97.4 0.00095 2.1E-08 67.7 9.9 76 2-89 133-208 (330)
210 COG2423 Predicted ornithine cy 97.4 0.0015 3.2E-08 65.7 10.9 123 2-159 131-253 (330)
211 PF13460 NAD_binding_10: NADH( 97.4 0.00091 2E-08 61.2 8.8 98 4-128 1-99 (183)
212 PRK09496 trkA potassium transp 97.3 0.00058 1.3E-08 72.1 8.4 73 2-88 1-75 (453)
213 PRK07574 formate dehydrogenase 97.3 0.00095 2.1E-08 68.7 9.5 103 321-456 189-295 (385)
214 cd05296 GH4_P_beta_glucosidase 97.3 0.0028 6E-08 66.2 13.1 80 2-89 1-86 (419)
215 TIGR02354 thiF_fam2 thiamine b 97.3 0.00074 1.6E-08 63.3 8.0 32 2-35 22-54 (200)
216 TIGR01327 PGDH D-3-phosphoglyc 97.3 0.0014 3E-08 70.7 10.9 102 321-456 135-240 (525)
217 PRK00436 argC N-acetyl-gamma-g 97.3 0.00093 2E-08 68.1 9.1 34 1-35 2-36 (343)
218 cd01336 MDH_cytoplasmic_cytoso 97.3 0.00085 1.8E-08 67.8 8.6 123 2-133 3-133 (325)
219 PRK07589 ornithine cyclodeamin 97.3 0.0017 3.7E-08 66.0 10.7 103 2-134 130-232 (346)
220 PRK00045 hemA glutamyl-tRNA re 97.3 0.0018 3.9E-08 67.9 11.2 71 2-90 183-254 (423)
221 PRK13301 putative L-aspartate 97.3 0.0033 7.2E-08 60.9 12.0 66 2-87 3-71 (267)
222 PF02423 OCD_Mu_crystall: Orni 97.3 0.0015 3.2E-08 65.7 10.1 102 2-133 129-230 (313)
223 PLN03139 formate dehydrogenase 97.3 0.0014 3E-08 67.5 10.0 103 321-456 196-302 (386)
224 TIGR01772 MDH_euk_gproteo mala 97.3 0.0015 3.3E-08 65.5 9.8 115 3-133 1-121 (312)
225 TIGR01850 argC N-acetyl-gamma- 97.3 0.0012 2.6E-08 67.4 9.1 97 2-128 1-100 (346)
226 PLN00203 glutamyl-tRNA reducta 97.2 0.00073 1.6E-08 72.2 7.5 73 2-89 267-340 (519)
227 TIGR01758 MDH_euk_cyt malate d 97.2 0.0024 5.3E-08 64.4 10.9 121 3-136 1-133 (324)
228 PLN00106 malate dehydrogenase 97.2 0.0018 4E-08 65.2 9.7 114 2-132 19-139 (323)
229 COG2910 Putative NADH-flavin r 97.2 0.0018 3.9E-08 58.8 8.4 72 2-89 1-73 (211)
230 PF02056 Glyco_hydro_4: Family 97.2 0.0011 2.4E-08 61.0 7.2 77 3-87 1-82 (183)
231 TIGR00561 pntA NAD(P) transhyd 97.2 0.0026 5.7E-08 67.5 10.9 116 2-132 165-289 (511)
232 PLN02968 Probable N-acetyl-gam 97.1 0.0014 3E-08 67.6 8.3 96 1-129 38-136 (381)
233 PRK10206 putative oxidoreducta 97.1 0.002 4.3E-08 65.7 9.4 72 1-90 1-76 (344)
234 PRK13243 glyoxylate reductase; 97.1 0.0031 6.6E-08 64.0 10.7 101 321-456 147-251 (333)
235 TIGR01771 L-LDH-NAD L-lactate 97.1 0.0023 5.1E-08 63.8 9.6 113 6-134 1-119 (299)
236 PLN02928 oxidoreductase family 97.1 0.0025 5.5E-08 65.0 9.9 116 320-456 155-273 (347)
237 TIGR02992 ectoine_eutC ectoine 97.1 0.0035 7.5E-08 63.5 10.6 75 2-89 130-205 (326)
238 PRK15409 bifunctional glyoxyla 97.1 0.004 8.6E-08 62.9 10.7 101 321-456 142-247 (323)
239 COG0059 IlvC Ketol-acid reduct 97.1 0.0028 6.1E-08 61.9 9.0 90 2-128 19-110 (338)
240 PRK08410 2-hydroxyacid dehydro 97.1 0.0037 8E-08 62.8 10.3 98 321-456 142-243 (311)
241 PRK00258 aroE shikimate 5-dehy 97.1 0.003 6.4E-08 62.5 9.5 73 2-90 124-197 (278)
242 PRK12480 D-lactate dehydrogena 97.0 0.0031 6.8E-08 63.8 9.7 98 322-455 144-244 (330)
243 PRK13581 D-3-phosphoglycerate 97.0 0.0037 8E-08 67.4 10.7 100 321-455 137-240 (526)
244 TIGR01761 thiaz-red thiazoliny 97.0 0.0061 1.3E-07 61.9 11.2 68 2-89 4-73 (343)
245 PRK09310 aroDE bifunctional 3- 97.0 0.0041 9E-08 66.2 10.4 68 2-88 333-400 (477)
246 COG2084 MmsB 3-hydroxyisobutyr 97.0 0.0034 7.4E-08 61.8 9.0 107 325-463 1-117 (286)
247 PRK13940 glutamyl-tRNA reducta 97.0 0.002 4.4E-08 67.1 7.5 72 2-90 182-254 (414)
248 COG0002 ArgC Acetylglutamate s 96.9 0.0028 6E-08 63.3 8.0 76 1-88 2-80 (349)
249 PRK12549 shikimate 5-dehydroge 96.9 0.0035 7.6E-08 62.1 8.8 75 2-89 128-203 (284)
250 PRK15438 erythronate-4-phospha 96.9 0.0081 1.8E-07 61.7 11.5 99 320-456 112-218 (378)
251 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0075 1.6E-07 59.6 10.5 70 2-89 2-75 (285)
252 TIGR02853 spore_dpaA dipicolin 96.8 0.0075 1.6E-07 59.9 10.2 117 313-463 140-259 (287)
253 PRK11861 bifunctional prephena 96.8 0.021 4.5E-07 63.6 14.7 131 82-233 1-136 (673)
254 PLN03075 nicotianamine synthas 96.8 0.011 2.5E-07 58.4 11.2 133 2-157 125-262 (296)
255 COG0373 HemA Glutamyl-tRNA red 96.8 0.009 1.9E-07 61.7 10.6 70 2-89 179-249 (414)
256 CHL00194 ycf39 Ycf39; Provisio 96.8 0.0025 5.5E-08 64.0 6.5 73 2-88 1-74 (317)
257 PF03435 Saccharop_dh: Sacchar 96.8 0.002 4.3E-08 66.7 5.9 121 4-139 1-134 (386)
258 PRK06436 glycerate dehydrogena 96.8 0.0058 1.2E-07 61.1 8.9 97 321-455 119-219 (303)
259 PRK08605 D-lactate dehydrogena 96.8 0.007 1.5E-07 61.4 9.7 98 321-453 143-244 (332)
260 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.004 8.7E-08 56.7 7.0 53 2-89 45-98 (168)
261 cd05298 GH4_GlvA_pagL_like Gly 96.8 0.0058 1.2E-07 64.1 9.2 77 2-87 1-83 (437)
262 PF02254 TrkA_N: TrkA-N domain 96.8 0.01 2.2E-07 50.1 9.2 69 4-87 1-71 (116)
263 PRK00257 erythronate-4-phospha 96.8 0.013 2.7E-07 60.5 11.4 100 319-456 111-218 (381)
264 PTZ00142 6-phosphogluconate de 96.8 0.0095 2.1E-07 63.1 10.8 121 325-471 2-131 (470)
265 PRK13403 ketol-acid reductoiso 96.8 0.0062 1.4E-07 60.7 8.8 93 321-446 13-105 (335)
266 PRK14194 bifunctional 5,10-met 96.8 0.0092 2E-07 59.1 10.0 89 307-447 143-231 (301)
267 PRK14189 bifunctional 5,10-met 96.7 0.0051 1.1E-07 60.6 7.8 71 2-127 159-230 (285)
268 PRK03659 glutathione-regulated 96.7 0.0063 1.4E-07 66.8 9.5 73 2-89 401-475 (601)
269 cd05197 GH4_glycoside_hydrolas 96.7 0.0064 1.4E-07 63.6 9.1 79 2-88 1-84 (425)
270 PRK08300 acetaldehyde dehydrog 96.7 0.012 2.5E-07 58.5 10.3 36 2-38 5-41 (302)
271 PRK06199 ornithine cyclodeamin 96.7 0.0087 1.9E-07 61.7 9.9 76 2-88 156-233 (379)
272 PRK15461 NADH-dependent gamma- 96.7 0.008 1.7E-07 59.9 9.4 108 325-464 2-118 (296)
273 PRK11790 D-3-phosphoglycerate 96.7 0.008 1.7E-07 62.7 9.7 98 321-455 148-249 (409)
274 PRK09424 pntA NAD(P) transhydr 96.7 0.017 3.6E-07 61.7 12.2 110 2-128 166-286 (509)
275 COG1052 LdhA Lactate dehydroge 96.7 0.013 2.9E-07 59.0 10.9 102 320-456 142-247 (324)
276 PLN02306 hydroxypyruvate reduc 96.7 0.0097 2.1E-07 61.5 10.1 115 321-456 162-283 (386)
277 PRK00961 H(2)-dependent methyl 96.7 0.054 1.2E-06 52.3 14.2 108 64-199 127-235 (342)
278 PF01262 AlaDh_PNT_C: Alanine 96.7 0.0043 9.3E-08 56.5 6.6 111 2-128 21-140 (168)
279 PRK14106 murD UDP-N-acetylmura 96.7 0.04 8.6E-07 58.2 14.7 33 2-36 6-38 (450)
280 COG1486 CelF Alpha-galactosida 96.6 0.0072 1.6E-07 62.5 8.6 78 2-87 4-86 (442)
281 PRK12490 6-phosphogluconate de 96.6 0.013 2.7E-07 58.6 10.3 106 326-464 2-117 (299)
282 PRK14175 bifunctional 5,10-met 96.6 0.0088 1.9E-07 59.0 8.8 53 2-89 159-212 (286)
283 PRK06487 glycerate dehydrogena 96.6 0.0075 1.6E-07 60.8 8.6 96 321-456 145-244 (317)
284 PRK11559 garR tartronate semia 96.6 0.01 2.2E-07 59.0 9.5 95 325-451 3-100 (296)
285 PRK09599 6-phosphogluconate de 96.6 0.015 3.3E-07 58.0 10.7 107 326-465 2-118 (301)
286 PRK15469 ghrA bifunctional gly 96.6 0.007 1.5E-07 60.8 8.2 100 321-455 133-236 (312)
287 PRK00683 murD UDP-N-acetylmura 96.6 0.015 3.3E-07 60.9 10.9 112 2-145 4-128 (418)
288 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.014 3.1E-07 54.3 9.5 74 2-89 29-108 (194)
289 TIGR01723 hmd_TIGR 5,10-methen 96.6 0.063 1.4E-06 51.9 13.7 108 64-199 125-233 (340)
290 COG0686 Ald Alanine dehydrogen 96.6 0.013 2.8E-07 57.6 9.2 104 3-136 170-277 (371)
291 KOG1502 Flavonol reductase/cin 96.6 0.016 3.4E-07 58.0 10.1 81 2-92 7-91 (327)
292 PRK06718 precorrin-2 dehydroge 96.6 0.055 1.2E-06 50.9 13.3 33 2-36 11-43 (202)
293 cd05212 NAD_bind_m-THF_DH_Cycl 96.5 0.029 6.4E-07 49.4 10.7 79 318-447 22-100 (140)
294 PLN02350 phosphogluconate dehy 96.5 0.016 3.5E-07 61.6 10.7 119 324-467 6-133 (493)
295 PRK10669 putative cation:proto 96.5 0.0059 1.3E-07 66.4 7.6 70 3-88 419-491 (558)
296 PRK08306 dipicolinate synthase 96.5 0.029 6.2E-07 56.0 11.6 113 318-464 146-261 (296)
297 TIGR00872 gnd_rel 6-phosphoglu 96.5 0.021 4.5E-07 57.0 10.5 110 326-468 2-120 (298)
298 PRK14874 aspartate-semialdehyd 96.4 0.0091 2E-07 60.6 7.8 69 1-88 1-73 (334)
299 PRK06932 glycerate dehydrogena 96.4 0.012 2.5E-07 59.3 8.5 96 322-456 145-244 (314)
300 KOG1495 Lactate dehydrogenase 96.4 0.018 3.8E-07 55.4 9.1 78 2-91 21-101 (332)
301 TIGR01505 tartro_sem_red 2-hyd 96.4 0.015 3.2E-07 57.8 9.2 107 326-464 1-116 (291)
302 PF02882 THF_DHG_CYH_C: Tetrah 96.4 0.02 4.2E-07 51.7 8.8 73 2-129 37-110 (160)
303 PRK14179 bifunctional 5,10-met 96.4 0.023 5E-07 55.9 9.8 79 318-447 152-230 (284)
304 cd05211 NAD_bind_Glu_Leu_Phe_V 96.4 0.028 6.1E-07 53.4 10.2 33 2-36 24-57 (217)
305 PF03059 NAS: Nicotianamine sy 96.3 0.031 6.7E-07 54.8 10.4 105 2-129 122-232 (276)
306 PRK03562 glutathione-regulated 96.3 0.017 3.7E-07 63.6 9.5 72 2-88 401-474 (621)
307 cd01487 E1_ThiF_like E1_ThiF_l 96.3 0.0086 1.9E-07 54.9 6.1 39 3-43 1-40 (174)
308 PRK09496 trkA potassium transp 96.3 0.02 4.2E-07 60.5 9.5 42 1-44 231-272 (453)
309 PRK03369 murD UDP-N-acetylmura 96.3 0.077 1.7E-06 56.8 14.1 69 2-89 13-81 (488)
310 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.042 9.2E-07 52.6 10.8 118 2-160 32-161 (227)
311 PRK01710 murD UDP-N-acetylmura 96.2 0.064 1.4E-06 56.9 13.3 33 2-36 15-47 (458)
312 PRK15059 tartronate semialdehy 96.2 0.021 4.7E-07 56.8 9.0 106 326-464 2-116 (292)
313 KOG0068 D-3-phosphoglycerate d 96.2 0.11 2.3E-06 51.8 13.2 106 2-143 147-252 (406)
314 KOG3124 Pyrroline-5-carboxylat 96.2 0.1 2.3E-06 50.0 12.8 198 2-252 1-203 (267)
315 PRK12475 thiamine/molybdopteri 96.2 0.018 3.8E-07 58.6 8.2 40 2-43 25-65 (338)
316 PRK10792 bifunctional 5,10-met 96.2 0.021 4.5E-07 56.2 8.4 71 2-127 160-231 (285)
317 PLN02256 arogenate dehydrogena 96.2 0.022 4.7E-07 57.1 8.6 114 301-449 14-129 (304)
318 PRK14191 bifunctional 5,10-met 96.1 0.021 4.4E-07 56.3 8.1 71 2-127 158-229 (285)
319 cd01079 NAD_bind_m-THF_DH NAD 96.1 0.032 7E-07 51.6 8.7 89 2-129 63-158 (197)
320 cd05213 NAD_bind_Glutamyl_tRNA 96.1 0.19 4.2E-06 50.4 15.1 125 310-465 165-293 (311)
321 COG0771 MurD UDP-N-acetylmuram 96.1 0.045 9.7E-07 57.3 10.7 117 1-145 7-136 (448)
322 PRK01438 murD UDP-N-acetylmura 96.1 0.1 2.2E-06 55.7 13.8 33 2-36 17-49 (480)
323 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.048 1E-06 49.1 9.5 92 308-451 21-112 (160)
324 PRK11908 NAD-dependent epimera 96.0 0.028 6.2E-07 57.1 9.1 41 1-42 1-42 (347)
325 PRK08664 aspartate-semialdehyd 96.0 0.037 8E-07 56.6 9.7 81 1-88 3-86 (349)
326 PRK00141 murD UDP-N-acetylmura 96.0 0.069 1.5E-06 56.9 12.2 38 2-41 16-53 (473)
327 cd05212 NAD_bind_m-THF_DH_Cycl 96.0 0.046 9.9E-07 48.2 8.9 70 2-126 29-99 (140)
328 TIGR00873 gnd 6-phosphoglucona 96.0 0.044 9.6E-07 58.1 10.4 118 326-470 1-127 (467)
329 COG4408 Uncharacterized protei 95.9 0.49 1.1E-05 47.0 16.3 228 1-254 4-285 (431)
330 TIGR01546 GAPDH-II_archae glyc 95.9 0.037 8E-07 55.8 9.0 85 4-90 1-87 (333)
331 PRK00421 murC UDP-N-acetylmura 95.9 0.047 1E-06 57.9 10.4 111 2-145 8-133 (461)
332 cd05191 NAD_bind_amino_acid_DH 95.9 0.046 1E-06 43.7 8.0 32 2-34 24-55 (86)
333 PRK14192 bifunctional 5,10-met 95.9 0.038 8.2E-07 54.7 8.8 53 2-89 160-213 (283)
334 PRK14188 bifunctional 5,10-met 95.9 0.05 1.1E-06 54.0 9.6 80 318-448 152-231 (296)
335 PRK11863 N-acetyl-gamma-glutam 95.9 0.035 7.5E-07 55.6 8.5 31 1-32 2-33 (313)
336 PRK06719 precorrin-2 dehydroge 95.9 0.056 1.2E-06 48.7 9.1 38 2-43 14-51 (157)
337 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.032 6.9E-07 50.1 7.4 105 326-449 1-106 (157)
338 COG1063 Tdh Threonine dehydrog 95.8 0.096 2.1E-06 53.5 11.8 41 3-44 171-211 (350)
339 PRK05472 redox-sensing transcr 95.8 0.011 2.4E-07 55.9 4.6 69 2-88 85-156 (213)
340 PF00070 Pyr_redox: Pyridine n 95.8 0.019 4.1E-07 45.2 5.1 33 3-37 1-33 (80)
341 PRK08644 thiamine biosynthesis 95.8 0.031 6.8E-07 52.9 7.3 40 2-43 29-69 (212)
342 KOG1683 Hydroxyacyl-CoA dehydr 95.7 0.014 2.9E-07 58.6 5.0 106 12-133 1-112 (380)
343 TIGR03026 NDP-sugDHase nucleot 95.7 0.052 1.1E-06 56.8 9.7 107 326-450 2-123 (411)
344 PRK14190 bifunctional 5,10-met 95.7 0.049 1.1E-06 53.7 8.6 71 2-127 159-230 (284)
345 PRK14176 bifunctional 5,10-met 95.7 0.047 1E-06 53.8 8.4 72 2-128 165-237 (287)
346 PLN02688 pyrroline-5-carboxyla 95.7 0.076 1.6E-06 51.9 10.0 99 326-457 2-105 (266)
347 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.025 5.5E-07 52.3 6.2 108 326-452 2-124 (185)
348 TIGR01470 cysG_Nterm siroheme 95.6 0.11 2.3E-06 49.0 10.4 65 2-87 10-78 (205)
349 PRK06270 homoserine dehydrogen 95.6 0.1 2.2E-06 53.1 11.1 77 2-89 3-100 (341)
350 PRK01390 murD UDP-N-acetylmura 95.6 0.15 3.2E-06 54.2 12.7 40 2-43 10-49 (460)
351 TIGR02356 adenyl_thiF thiazole 95.6 0.041 9E-07 51.6 7.6 40 2-43 22-62 (202)
352 PRK02006 murD UDP-N-acetylmura 95.6 0.14 3E-06 55.0 12.6 33 2-36 8-40 (498)
353 PRK07417 arogenate dehydrogena 95.6 0.038 8.3E-07 54.5 7.7 93 326-450 2-94 (279)
354 PRK12409 D-amino acid dehydrog 95.6 0.015 3.3E-07 60.5 5.0 34 1-36 1-34 (410)
355 PRK03803 murD UDP-N-acetylmura 95.6 0.17 3.7E-06 53.5 13.0 32 3-36 8-39 (448)
356 TIGR01692 HIBADH 3-hydroxyisob 95.6 0.051 1.1E-06 53.9 8.5 98 345-464 7-113 (288)
357 PRK14183 bifunctional 5,10-met 95.6 0.048 1E-06 53.6 8.0 71 2-127 158-229 (281)
358 PRK14189 bifunctional 5,10-met 95.6 0.094 2E-06 51.7 10.1 79 318-447 152-230 (285)
359 cd01080 NAD_bind_m-THF_DH_Cycl 95.6 0.099 2.1E-06 47.6 9.6 84 315-449 35-118 (168)
360 TIGR01851 argC_other N-acetyl- 95.5 0.054 1.2E-06 54.0 8.4 57 2-88 2-59 (310)
361 PRK14173 bifunctional 5,10-met 95.5 0.11 2.5E-06 51.1 10.6 79 318-447 149-227 (287)
362 TIGR01809 Shik-DH-AROM shikima 95.5 0.044 9.5E-07 54.3 7.8 72 2-89 126-201 (282)
363 COG2344 AT-rich DNA-binding pr 95.5 0.029 6.3E-07 51.2 5.8 69 1-88 84-156 (211)
364 PRK14173 bifunctional 5,10-met 95.5 0.059 1.3E-06 53.1 8.5 71 2-127 156-227 (287)
365 COG1064 AdhP Zn-dependent alco 95.5 0.11 2.4E-06 52.4 10.6 41 2-44 168-208 (339)
366 PRK05671 aspartate-semialdehyd 95.5 0.045 9.8E-07 55.5 7.9 70 1-88 4-76 (336)
367 PRK02705 murD UDP-N-acetylmura 95.5 0.14 3E-06 54.2 12.0 32 3-36 2-33 (459)
368 TIGR00978 asd_EA aspartate-sem 95.5 0.054 1.2E-06 55.2 8.5 33 2-35 1-35 (341)
369 PF13380 CoA_binding_2: CoA bi 95.5 0.075 1.6E-06 45.2 8.0 97 2-144 1-101 (116)
370 KOG0068 D-3-phosphoglycerate d 95.5 0.074 1.6E-06 52.9 8.8 101 319-453 141-244 (406)
371 PRK00711 D-amino acid dehydrog 95.4 0.02 4.2E-07 59.7 5.2 34 2-37 1-34 (416)
372 PRK09287 6-phosphogluconate de 95.4 0.081 1.8E-06 56.0 9.7 107 347-470 3-118 (459)
373 PRK05479 ketol-acid reductoiso 95.4 0.068 1.5E-06 53.9 8.7 93 321-446 14-107 (330)
374 PTZ00075 Adenosylhomocysteinas 95.4 0.1 2.2E-06 55.0 10.3 100 312-449 242-343 (476)
375 PRK14170 bifunctional 5,10-met 95.4 0.068 1.5E-06 52.6 8.4 71 2-127 158-229 (284)
376 PRK14170 bifunctional 5,10-met 95.4 0.14 3E-06 50.4 10.5 79 318-447 151-229 (284)
377 PRK14169 bifunctional 5,10-met 95.4 0.069 1.5E-06 52.6 8.4 71 2-127 157-228 (282)
378 PRK04663 murD UDP-N-acetylmura 95.4 0.25 5.3E-06 52.1 13.3 115 1-145 7-134 (438)
379 PRK01581 speE spermidine synth 95.4 0.82 1.8E-05 46.7 16.2 141 2-158 152-302 (374)
380 PRK14169 bifunctional 5,10-met 95.4 0.14 3E-06 50.4 10.5 79 318-447 150-228 (282)
381 PRK02472 murD UDP-N-acetylmura 95.3 0.3 6.4E-06 51.5 13.8 33 2-36 6-38 (447)
382 PRK14186 bifunctional 5,10-met 95.3 0.071 1.5E-06 52.8 8.4 71 2-127 159-230 (297)
383 PRK06349 homoserine dehydrogen 95.3 0.05 1.1E-06 57.1 7.9 68 2-88 4-82 (426)
384 PRK14182 bifunctional 5,10-met 95.3 0.14 3E-06 50.3 10.3 79 318-447 151-229 (282)
385 PRK14177 bifunctional 5,10-met 95.3 0.08 1.7E-06 52.1 8.5 72 2-128 160-232 (284)
386 PRK08293 3-hydroxybutyryl-CoA 95.2 0.12 2.6E-06 51.3 9.8 127 325-465 4-141 (287)
387 PF02629 CoA_binding: CoA bind 95.2 0.04 8.6E-07 45.2 5.4 66 2-88 4-72 (96)
388 PRK14190 bifunctional 5,10-met 95.2 0.14 3.1E-06 50.4 10.1 81 316-447 150-230 (284)
389 PLN02516 methylenetetrahydrofo 95.2 0.083 1.8E-06 52.4 8.4 71 2-127 168-239 (299)
390 PRK00536 speE spermidine synth 95.2 0.6 1.3E-05 45.6 14.2 101 2-131 74-175 (262)
391 PRK04308 murD UDP-N-acetylmura 95.2 0.27 5.8E-06 51.9 12.9 34 2-37 6-39 (445)
392 PRK14180 bifunctional 5,10-met 95.2 0.08 1.7E-06 52.1 8.1 71 2-127 159-230 (282)
393 PRK05868 hypothetical protein; 95.2 0.022 4.7E-07 58.7 4.5 35 1-37 1-35 (372)
394 PRK08040 putative semialdehyde 95.2 0.055 1.2E-06 54.8 7.2 90 2-128 5-98 (336)
395 PRK14166 bifunctional 5,10-met 95.1 0.15 3.3E-06 50.1 10.0 79 318-447 151-229 (282)
396 PRK14166 bifunctional 5,10-met 95.1 0.079 1.7E-06 52.1 8.0 71 2-127 158-229 (282)
397 PRK14186 bifunctional 5,10-met 95.1 0.18 3.9E-06 50.0 10.5 80 317-447 151-230 (297)
398 PRK06728 aspartate-semialdehyd 95.1 0.064 1.4E-06 54.5 7.5 68 2-88 6-78 (347)
399 PRK14177 bifunctional 5,10-met 95.1 0.17 3.7E-06 49.8 10.2 80 317-447 152-231 (284)
400 PF05368 NmrA: NmrA-like famil 95.1 0.056 1.2E-06 51.5 6.9 72 4-89 1-75 (233)
401 cd05311 NAD_bind_2_malic_enz N 95.1 0.17 3.6E-06 48.4 10.0 74 2-87 26-106 (226)
402 PRK14982 acyl-ACP reductase; P 95.1 0.13 2.8E-06 52.2 9.6 69 2-89 156-226 (340)
403 TIGR01082 murC UDP-N-acetylmur 95.1 0.2 4.4E-06 52.9 11.6 110 3-145 1-125 (448)
404 PRK06598 aspartate-semialdehyd 95.1 0.13 2.8E-06 52.7 9.5 33 1-34 1-37 (369)
405 PRK14172 bifunctional 5,10-met 95.1 0.2 4.3E-06 49.2 10.5 78 318-446 152-229 (278)
406 PRK14172 bifunctional 5,10-met 95.0 0.1 2.3E-06 51.2 8.5 70 2-126 159-229 (278)
407 PF13241 NAD_binding_7: Putati 95.0 0.091 2E-06 43.6 7.1 33 2-36 8-40 (103)
408 PRK07688 thiamine/molybdopteri 95.0 0.084 1.8E-06 53.7 8.1 41 2-44 25-66 (339)
409 PRK09260 3-hydroxybutyryl-CoA 95.0 0.21 4.5E-06 49.5 10.9 121 325-456 2-126 (288)
410 PLN02383 aspartate semialdehyd 95.0 0.061 1.3E-06 54.8 7.1 69 2-88 8-79 (344)
411 PRK07679 pyrroline-5-carboxyla 95.0 0.2 4.3E-06 49.4 10.6 102 323-457 2-109 (279)
412 PRK03806 murD UDP-N-acetylmura 95.0 0.41 8.8E-06 50.4 13.6 32 3-36 8-39 (438)
413 cd00755 YgdL_like Family of ac 95.0 0.27 5.9E-06 47.1 11.1 41 2-44 12-53 (231)
414 TIGR01087 murD UDP-N-acetylmur 95.0 0.28 6E-06 51.6 12.3 33 3-37 1-33 (433)
415 PRK14175 bifunctional 5,10-met 95.0 0.17 3.7E-06 49.9 9.9 82 318-450 152-233 (286)
416 PRK06753 hypothetical protein; 95.0 0.029 6.2E-07 57.5 4.7 34 2-37 1-34 (373)
417 PRK14180 bifunctional 5,10-met 95.0 0.21 4.6E-06 49.2 10.4 88 308-447 143-230 (282)
418 PF00670 AdoHcyase_NAD: S-aden 95.0 0.32 7E-06 43.8 10.7 120 312-467 11-133 (162)
419 PRK14183 bifunctional 5,10-met 95.0 0.18 4E-06 49.5 9.9 79 318-447 151-229 (281)
420 TIGR03466 HpnA hopanoid-associ 94.9 0.023 5.1E-07 56.7 3.8 72 2-87 1-73 (328)
421 PRK14193 bifunctional 5,10-met 94.9 0.11 2.4E-06 51.1 8.3 70 2-126 159-231 (284)
422 PRK14187 bifunctional 5,10-met 94.9 0.11 2.4E-06 51.4 8.3 70 2-126 161-231 (294)
423 PLN02662 cinnamyl-alcohol dehy 94.9 0.14 3E-06 51.1 9.3 35 2-38 5-40 (322)
424 PLN00141 Tic62-NAD(P)-related 94.9 0.064 1.4E-06 51.8 6.7 40 1-42 17-57 (251)
425 PRK14573 bifunctional D-alanyl 94.9 0.27 5.9E-06 56.0 12.6 110 3-144 6-129 (809)
426 PRK14187 bifunctional 5,10-met 94.9 0.21 4.5E-06 49.5 10.1 78 318-446 154-231 (294)
427 PRK12809 putative oxidoreducta 94.9 0.071 1.5E-06 59.0 7.7 34 2-37 311-344 (639)
428 TIGR03649 ergot_EASG ergot alk 94.8 0.094 2E-06 51.6 7.8 35 3-39 1-36 (285)
429 cd01079 NAD_bind_m-THF_DH NAD 94.8 0.21 4.6E-06 46.3 9.4 100 321-449 59-158 (197)
430 PLN02897 tetrahydrofolate dehy 94.8 0.099 2.1E-06 52.7 7.8 71 2-127 215-286 (345)
431 PRK14171 bifunctional 5,10-met 94.8 0.12 2.6E-06 50.9 8.3 71 2-127 160-231 (288)
432 PRK14182 bifunctional 5,10-met 94.8 0.14 2.9E-06 50.5 8.5 71 2-127 158-229 (282)
433 PRK14193 bifunctional 5,10-met 94.7 0.26 5.6E-06 48.6 10.2 79 318-447 152-232 (284)
434 PRK09414 glutamate dehydrogena 94.6 0.45 9.8E-06 50.0 12.5 124 2-160 233-369 (445)
435 PLN02427 UDP-apiose/xylose syn 94.6 0.046 1E-06 56.4 5.2 41 2-43 15-56 (386)
436 PRK14176 bifunctional 5,10-met 94.6 0.27 5.9E-06 48.5 10.2 79 318-447 158-236 (287)
437 PRK14178 bifunctional 5,10-met 94.6 0.12 2.7E-06 50.7 7.8 72 2-128 153-225 (279)
438 PRK14191 bifunctional 5,10-met 94.6 0.23 5E-06 48.9 9.7 79 318-447 151-229 (285)
439 TIGR01035 hemA glutamyl-tRNA r 94.6 1.1 2.5E-05 46.9 15.5 115 320-465 176-297 (417)
440 PLN02516 methylenetetrahydrofo 94.6 0.3 6.5E-06 48.5 10.4 79 318-447 161-239 (299)
441 PRK14171 bifunctional 5,10-met 94.6 0.3 6.6E-06 48.2 10.4 79 318-447 153-231 (288)
442 PF03807 F420_oxidored: NADP o 94.6 0.14 2.9E-06 41.6 6.9 88 326-447 1-94 (96)
443 PRK10792 bifunctional 5,10-met 94.6 0.29 6.2E-06 48.3 10.2 79 318-447 153-231 (285)
444 PRK06392 homoserine dehydrogen 94.6 0.13 2.9E-06 51.9 8.2 21 2-22 1-21 (326)
445 cd00757 ThiF_MoeB_HesA_family 94.4 0.068 1.5E-06 51.2 5.5 41 2-44 22-63 (228)
446 PF01494 FAD_binding_3: FAD bi 94.4 0.044 9.6E-07 55.0 4.5 34 2-37 2-35 (356)
447 PRK11199 tyrA bifunctional cho 94.4 0.42 9.2E-06 49.3 11.7 80 323-449 97-177 (374)
448 PLN00203 glutamyl-tRNA reducta 94.4 1 2.2E-05 48.5 14.8 110 310-447 251-369 (519)
449 TIGR01296 asd_B aspartate-semi 94.4 0.077 1.7E-06 54.0 6.0 66 3-88 1-71 (339)
450 PRK12491 pyrroline-5-carboxyla 94.4 0.28 6E-06 48.3 9.8 115 325-478 3-121 (272)
451 PTZ00188 adrenodoxin reductase 94.4 0.096 2.1E-06 55.5 6.8 85 2-89 40-137 (506)
452 PRK04690 murD UDP-N-acetylmura 94.3 0.69 1.5E-05 49.2 13.4 33 2-36 9-41 (468)
453 TIGR01318 gltD_gamma_fam gluta 94.3 0.17 3.8E-06 53.8 8.8 33 2-36 142-174 (467)
454 PLN02616 tetrahydrofolate dehy 94.3 0.17 3.6E-06 51.3 8.0 70 2-126 232-302 (364)
455 KOG1494 NAD-dependent malate d 94.3 0.17 3.7E-06 49.1 7.6 131 2-145 29-163 (345)
456 PLN02616 tetrahydrofolate dehy 94.3 0.31 6.7E-06 49.4 9.9 89 307-447 215-303 (364)
457 PRK07588 hypothetical protein; 94.2 0.051 1.1E-06 56.1 4.5 34 2-37 1-34 (391)
458 PRK12320 hypothetical protein; 94.2 0.21 4.6E-06 55.4 9.4 34 2-37 1-35 (699)
459 cd01075 NAD_bind_Leu_Phe_Val_D 94.2 0.92 2E-05 42.5 12.5 108 319-464 23-137 (200)
460 PF07991 IlvN: Acetohydroxy ac 94.2 0.15 3.2E-06 45.8 6.7 90 322-444 2-92 (165)
461 PRK12771 putative glutamate sy 94.2 0.13 2.9E-06 56.0 7.8 32 2-35 138-169 (564)
462 PRK12779 putative bifunctional 94.2 0.073 1.6E-06 61.3 5.9 34 2-37 307-340 (944)
463 PRK07538 hypothetical protein; 94.2 0.054 1.2E-06 56.5 4.5 34 2-37 1-34 (413)
464 cd01065 NAD_bind_Shikimate_DH 94.1 0.41 8.8E-06 42.4 9.6 112 321-462 16-135 (155)
465 PRK00094 gpsA NAD(P)H-dependen 94.1 0.18 3.8E-06 50.7 8.1 108 326-452 3-110 (325)
466 PRK12769 putative oxidoreducta 94.1 0.19 4.2E-06 55.8 9.0 34 2-37 328-361 (654)
467 PRK14181 bifunctional 5,10-met 94.1 0.23 5.1E-06 48.9 8.5 73 2-127 154-229 (287)
468 PLN02897 tetrahydrofolate dehy 94.1 0.38 8.1E-06 48.6 10.1 89 307-447 198-286 (345)
469 COG0451 WcaG Nucleoside-diphos 94.1 0.14 2.9E-06 50.8 7.1 37 2-40 1-38 (314)
470 PF13450 NAD_binding_8: NAD(P) 94.1 0.083 1.8E-06 40.3 4.3 29 6-36 1-29 (68)
471 PRK12548 shikimate 5-dehydroge 94.1 0.43 9.3E-06 47.4 10.6 40 2-43 127-170 (289)
472 PRK14184 bifunctional 5,10-met 94.0 0.21 4.6E-06 49.2 8.1 72 2-128 158-234 (286)
473 PRK00377 cbiT cobalt-precorrin 94.0 1.7 3.7E-05 40.4 13.9 114 3-144 43-161 (198)
474 PRK07236 hypothetical protein; 94.0 0.066 1.4E-06 55.3 4.8 34 2-37 7-40 (386)
475 TIGR03219 salicylate_mono sali 94.0 0.059 1.3E-06 56.2 4.5 34 2-37 1-35 (414)
476 PRK11728 hydroxyglutarate oxid 94.0 0.071 1.5E-06 55.2 5.0 35 2-36 3-37 (393)
477 PRK14618 NAD(P)H-dependent gly 94.0 0.4 8.6E-06 48.5 10.2 103 325-450 5-107 (328)
478 PRK08163 salicylate hydroxylas 93.9 0.063 1.4E-06 55.5 4.5 34 2-37 5-38 (396)
479 COG0654 UbiH 2-polyprenyl-6-me 93.9 0.067 1.4E-06 55.4 4.5 33 1-35 2-34 (387)
480 TIGR01724 hmd_rel H2-forming N 93.9 0.21 4.5E-06 49.9 7.6 85 346-450 32-119 (341)
481 PRK06847 hypothetical protein; 93.9 0.067 1.4E-06 54.8 4.5 35 1-37 4-38 (375)
482 PRK07502 cyclohexadienyl dehyd 93.9 0.26 5.6E-06 49.3 8.6 95 324-449 6-102 (307)
483 PRK10538 malonic semialdehyde 93.9 0.75 1.6E-05 44.0 11.6 40 2-43 1-41 (248)
484 PRK14181 bifunctional 5,10-met 93.9 0.53 1.2E-05 46.4 10.5 79 318-447 147-229 (287)
485 PRK06617 2-octaprenyl-6-methox 93.8 0.069 1.5E-06 55.0 4.5 34 1-36 1-34 (374)
486 PRK08655 prephenate dehydrogen 93.8 0.26 5.6E-06 52.0 8.9 91 326-449 2-94 (437)
487 PRK08309 short chain dehydroge 93.8 3.6 7.9E-05 37.7 15.4 40 2-43 1-40 (177)
488 PF00899 ThiF: ThiF family; I 93.8 0.11 2.5E-06 45.1 5.2 34 2-37 3-37 (135)
489 PRK12557 H(2)-dependent methyl 93.8 0.26 5.7E-06 50.2 8.5 85 346-450 32-119 (342)
490 TIGR03855 NAD_NadX aspartate d 93.8 0.66 1.4E-05 44.4 10.8 87 29-153 5-95 (229)
491 PTZ00245 ubiquitin activating 93.8 0.66 1.4E-05 44.8 10.5 114 2-135 27-149 (287)
492 TIGR02717 AcCoA-syn-alpha acet 93.7 0.61 1.3E-05 49.3 11.5 87 2-130 8-100 (447)
493 PRK14174 bifunctional 5,10-met 93.7 0.3 6.6E-06 48.4 8.5 72 2-128 160-236 (295)
494 KOG0022 Alcohol dehydrogenase, 93.7 0.24 5.3E-06 48.9 7.6 72 3-88 195-272 (375)
495 PRK14619 NAD(P)H-dependent gly 93.7 0.26 5.6E-06 49.4 8.3 83 324-452 4-87 (308)
496 PRK14192 bifunctional 5,10-met 93.7 0.51 1.1E-05 46.7 10.1 77 320-447 155-231 (283)
497 COG0493 GltD NADPH-dependent g 93.7 0.11 2.4E-06 54.9 5.8 87 2-90 124-220 (457)
498 PRK00045 hemA glutamyl-tRNA re 93.7 0.61 1.3E-05 49.0 11.3 114 321-465 179-300 (423)
499 PF01266 DAO: FAD dependent ox 93.7 0.1 2.2E-06 52.3 5.4 31 3-35 1-31 (358)
500 COG0665 DadA Glycine/D-amino a 93.7 0.087 1.9E-06 54.0 4.9 33 2-36 5-37 (387)
No 1
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=100.00 E-value=2e-101 Score=804.02 Aligned_cols=473 Identities=93% Similarity=1.429 Sum_probs=436.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+||||+++|..||++++|++|+++|++++++++|++|..++.|+++++++.+...+++++|+++.+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999987446889999999999999999999999999999987644456999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||.+.++.+++..+|++++++++++|+++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987644333458999999999999999999999999999999999999988777644367899999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
||++++++.+|++||+|+.++.+.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++.+|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875444466889999999998744577889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhcC
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+.+|+++++++||+|++|++||+||||||||||+++|++.++++|+++.++++++++++|++||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998767899999999999999999999998877
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.++++||+|||+||||||+|+|+||+++|++.|+++|++|.+|||++..++..+.++..+++|++|++++++|+....++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 78999999999999999999999999999999999999999999999887665566667899999999999998888779
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCccc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWL 473 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
++++++++++++||+||++|+|++|++++|+.+.+.|+.|++|||+||+++++.+++.||+|+|+||+.+|||
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~ 473 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999887789999999999999999999999999999997
No 2
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-97 Score=696.38 Aligned_cols=480 Identities=86% Similarity=1.352 Sum_probs=463.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|||-||+||+|.|..+.+|.++|..+|+++|++..++++||+.+.|+||||+++.+++.+..++.|++|.+.+++++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||++|.||....|.|.+..+|++|++++.+.|+......+||+.+||+|+.+.+.+..+|.+...|..|.++++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999998888888899999999999999999999999999999999999999999997666688999999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+|.+++++++|+|++|||..+.....+.+.+..+|++..+...+.+++.+++|+.||+.|+|++..|+.+|.|..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999987766677888899999999987789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhcC
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+.+|..++++|+|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|++++.+|++|+.+.++++...|+.
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc-cc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV-KQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (480)
..+++||+|||++||.+|.|+|+||++.+.+.|++.++...+|||.+.++++.+++.+..++|+||+|++++++... +.
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~ 400 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ 400 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999965 77
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCcccccCCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+++..++|+|+++|+++||+|+|+||++||+++|.+.|.+|++|||+||++|.+++++.||+.+.||.+.++|+++||++
T Consensus 401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~ 480 (481)
T KOG2666|consen 401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV 480 (481)
T ss_pred eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011641 480 A 480 (480)
Q Consensus 480 ~ 480 (480)
+
T Consensus 481 g 481 (481)
T KOG2666|consen 481 G 481 (481)
T ss_pred C
Confidence 5
No 3
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-95 Score=716.28 Aligned_cols=412 Identities=42% Similarity=0.698 Sum_probs=385.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+..|.+||+. ||+|+++|+++++++.|++|..|++|||+++++.+ ...+++++|+|.+++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999998 99999999999999999999999999999999986 55678999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||...+| +.|+++++++++.|.++++..++||.+|||||||++.+.+.+.+...+.+|.++++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999998865 8999999999999999999889999999999999999988776654445899999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC-CCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP-EDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~-~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
+|+|++++++|+|+|+|.. ++++.+.+++||..+.. ..++..++.++||++||+.|+|++++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 45678889999987532 356888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
.|+|.++|.++++.|+|||.+|++||+||||+|||||+..|+..|++.|++ ..+++++.++|+.|+.++++++.+.++
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999999999875
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.++.... +++
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~ 363 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD 363 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence 89999999999999999999999999999999999999999999998765321 236
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
+.++.++++++++||++|+.|.|++|+++||+.+ .|+.| +|||+||+++++
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~ 414 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD 414 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence 7899999999999999999999999999999998 89988 899999999863
No 4
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.6e-94 Score=701.32 Aligned_cols=418 Identities=35% Similarity=0.480 Sum_probs=378.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||||||||+|+|..||++ |++|+|+|+|+.+++.+|+|..++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999997775 66788999999988 78999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHH-HHHhcCC---CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P 156 (480)
++|||||||.+. ...||+++++++++.|++.|++|++||.+||++||||+++.. ++++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999976 359999999999999999999999999999999999999765 4554343 6799999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||..||+..+.+.+.++| +||. ++++.+.++.+|+.+.. ..+.++++++||++|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998 5777 48899999999999985 47788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++|| .+.++||||+||||+|.||+||++.|+++|.+ +++++.++++|+.||.|++.++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 48899999999999999999999999999998 899999999999999999999988
Q ss_pred Hh---cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.| ++.+++++|+|+|||||+|++|+||||+++|++.|.++|++|.+|||++.... ....+
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~-~~~~~---------------- 374 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP-TREDG---------------- 374 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch-hhhhc----------------
Confidence 55 56889999999999999999999999999999999999999999999998643 11110
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecC
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..++ ..+++++++++|+|||+|+|++|+.+||+.+.+. .+ +|||+||++++.... +.+||+
T Consensus 375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~~-vivDtrnV~~~~~~~-----~~~i~~ 435 (436)
T COG0677 375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--AK-VIVDTRNVWKREREA-----AKGIGR 435 (436)
T ss_pred ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--Cc-EEEECccccchhhhh-----hhcccC
Confidence 1122 3678999999999999999999999999998765 34 999999999977554 566665
No 5
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=100.00 E-value=6.1e-82 Score=653.05 Aligned_cols=407 Identities=23% Similarity=0.308 Sum_probs=358.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+||||++||.+|++ ||+|++||+++++++.|++|..|+.|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcCC---CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNSK---GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~P 156 (480)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+ +.+|+++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999986644 7999999999999999999999999999999999997 4566665322 4679999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||+.+|.+..++.+++++|+|+. +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+|+||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977653 6788899999999863346788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++|++++++++++ ..+.||+ |||||||||+++|++.+++.|+. ++++++++++|+.||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999743 2345666 99999999999999999999988 789999999999999999999999
Q ss_pred Hh---cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+ +++++++||+|||+||||||+|+|+||+++|++.|.++|++|.+|||++..+...+.++
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---------------- 367 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---------------- 367 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC----------------
Confidence 87 35688999999999999999999999999999999999999999999987655433221
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
.... .+.++++||+|||+|+|++|+++||+.+.+.|+.|.+|||+||+++.+
T Consensus 368 ------~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 368 ------IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred ------cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 1001 123578999999999999999999999999887655999999999853
No 6
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=1.9e-79 Score=636.88 Aligned_cols=406 Identities=40% Similarity=0.622 Sum_probs=371.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++|..+++|+++++++.+. ..+++++++++++++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999998 999999999999999999999999999999988652 3466899999998899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHH-HHHHhcC--C-CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE-KILTHNS--K-GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (480)
+||+|||||...++ .+|++++.++++++.+.++++++|+++||++|||++++. +++++.. . +.+|+++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999986644 899999999999999999999999999999999999985 5555522 1 4678999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
|++.+|.+..++.+++++++|++ +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998854 7899999999999862246788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++++++.+++.||+||||+|++||++++.+.|++.|++ .+++++++++|++||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 789999999999999999999999
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.| +.+++++|+|||+||||||+|+|+||++.|++.|+++|++|.+|||++..+....
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~---------------------- 363 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG---------------------- 363 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh----------------------
Confidence 88 5789999999999999999999999999999999999999999999998765321
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
+..+.+++++++++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 364 ---~~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 364 ---LPLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred ---cccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 11256889999999999999999999999999999999887 9999997
No 7
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-78 Score=624.61 Aligned_cols=394 Identities=29% Similarity=0.423 Sum_probs=348.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||++||.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...|+++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 58999999999999999999998 99999999999999999999999999999998764 345778887753 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC---------C-CCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---------K-GIK 149 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~---------~-g~~ 149 (480)
|+||+|||||.+.++ .+|++++++++++|.++++++++||++||++||+++++...+.+.+ + +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999986644 8999999999999999999999999999999999999887665532 1 357
Q ss_pred eEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
|.++|+|||+.+|.+..++.++++++ ||. ++++.++++++|+.+.+ ..++.+++++||++|+++|+|++++|++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999875 775 37899999999999974 4567789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHH
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (480)
+||++.+|+++|+|+.+|+++++++||+ .+++||+||||||||||+++|.+ +.+.. .+++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHH---hcCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 68899999999999999999965 34444 68999999999999999
Q ss_pred HHHHHHHHh-------cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChHHHHHhhhcccc
Q 011641 310 FVNRVVASM-------FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTEDQIQRDLTMNKF 381 (480)
Q Consensus 310 ~~~~~~~~l-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+++++.+.+ ++.++++||+|||+|||+||+|+|+||+++|++.|+++| ++|.+|||++...... +
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~--~----- 371 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK--L----- 371 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh--c-----
Confidence 999999876 456789999999999999999999999999999999996 9999999998653211 0
Q ss_pred CCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 382 DWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
...+. ..++++++++||+||++|+|++|+++||+++ ..| +|||+
T Consensus 372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~ 415 (415)
T PRK11064 372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT 415 (415)
T ss_pred ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence 01223 3789999999999999999999999999875 345 89995
No 8
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-78 Score=619.15 Aligned_cols=374 Identities=25% Similarity=0.365 Sum_probs=331.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||+++|..|+ . ||+|++||+++++++.+++|..++.|+++++++.+. .++++++++..+++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998888 4 899999999999999999999999999999987642 3567778888888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+ +.+.|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999997542 237899999999999988 688999999999999999999877654 357899999999
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHH-hccCCCC-eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY-AHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|++++++++|++||+|+. ++..+++.++| ..+.... +++.+++++||++|+++|+|++++|+|+||++.+|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 34556666666 4433222 2357899999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+ .+++ .+++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999998766 4455 6899999999999999999999873
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++++|+|||+||||||+|+|+||+++|++.|+++|++|.+|||++..... .+
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~-------------------------~~ 346 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF-------------------------FN 346 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh-------------------------cC
Confidence 67899999999999999999999999999999999999999999865431 14
Q ss_pred eEEecCHHhhcccccEEEEEecCccccccc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLD 429 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~ 429 (480)
+.+++++++++++||++++.|.|+||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK15057 347 SRLERDLATFKQQADVIISNRMAEELKDVA 376 (388)
T ss_pred CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence 789999999999999999999999998753
No 9
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=100.00 E-value=1.2e-37 Score=287.97 Aligned_cols=182 Identities=42% Similarity=0.640 Sum_probs=149.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+++|..||++ ||+|+++|+|+++++.|++|..|++||++++++++ ...+++++++|.++++.+||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 99999999999999999999999999999999987 44789999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcCC-CCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNSK-GIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~ 158 (480)
++|+|||||.+.++ .+|++++++++++|+++++++++||++||+||||+++ +.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998754 8999999999999999999999999999999999995 5678887654 468999999999
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDV 194 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l 194 (480)
+.||+++.++.++++|++|+. ++.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence 999999999999999998876 35555566654
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=5.6e-31 Score=255.49 Aligned_cols=248 Identities=21% Similarity=0.235 Sum_probs=208.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++++ ++.+... +.+..+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555441 2455677788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||.+ ..+++++ ..+.+.+++++++|++||+.|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999854 2456666 57889999999999999999999999999998865 34579999
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..++..+..+.+ .|++|++ ++.+++++++|+.+++ ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766655 5889986 8999999999999974 567788889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+++|+|++.+.++++...-.+| +++ .+.|||....+.||+.+..+.|++.|++ .++...+
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~ 261 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALA 261 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHH
Confidence 9999999999999997632222 122 3667899999999999999999999998 4444443
No 11
>PLN02858 fructose-bisphosphate aldolase
Probab=99.98 E-value=2.2e-29 Score=291.11 Aligned_cols=382 Identities=10% Similarity=0.048 Sum_probs=283.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||||||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999998 99999999999999988752 23556788998999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .+++++ +++.+.++++++||++||+.|.+++++.+.+.+.+. ...++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence 999998652 345554 578888889999999999999999999888877541 2456799988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+..+.. .+++||+ ++.+++++++|+.++. ..+++ ++.+++..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765544433 4788986 7899999999999874 34444 7899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHH-----h
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI-----N 303 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N 303 (480)
++.|+|++.++++++..+.-++ .++ .+.+||....+.||+.+..++|++.|++ .++...+.+. +
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS 276 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence 9999999999999987642111 122 3456788999999999999999999998 4444444321 1
Q ss_pred H-----HhHHHHHHHHHHHhc-----------------------CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011641 304 D-----YQKSRFVNRVVASMF-----------------------NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355 (480)
Q Consensus 304 ~-----~~~~~~~~~~~~~l~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~ 355 (480)
. .+. .+++.+.+..+ ++-..++|+++|+.. ....+++.|.+
T Consensus 277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~ 345 (1378)
T PLN02858 277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK 345 (1378)
T ss_pred cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence 1 111 11221111000 011237899999965 78999999999
Q ss_pred CCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcc-cccc--cHHH
Q 011641 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDE-FKTL--DYQR 432 (480)
Q Consensus 356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~--~~~~ 432 (480)
.|++|.+||+.....+.... .+.....++.++++++|+|++++.-++ .+++ ....
T Consensus 346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 99999999986543322211 123346788999999999999999765 2221 1223
Q ss_pred HHHhcCCCCEEEEcCCCCChh------hhhh--cCcEEEE
Q 011641 433 IYDNMQKPAFVFDGRNVVDAN------KLRE--IGFIVYS 464 (480)
Q Consensus 433 ~~~~~~~~~~viD~~~~~~~~------~~~~--~g~~y~~ 464 (480)
+...+++..+|||+..+-... .+.+ .|+.|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 455566667999998776532 2233 5766644
No 12
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.96 E-value=2.7e-28 Score=242.82 Aligned_cols=252 Identities=16% Similarity=0.156 Sum_probs=199.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999887753 1234567778889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||++. +++.+....+.+.+.+++++++|++||++|.+++++.+.+.+.+ +.++.+|....
T Consensus 60 vVi~~vp~~~-----------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV~g~ 124 (296)
T PRK15461 60 FVITMLPNGD-----------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPVGRT 124 (296)
T ss_pred EEEEecCCHH-----------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccCCCC
Confidence 9999998642 12222222245677788899999999999999999988887654 33568888766
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.|..+|+++|.+...+++.++|...+|++.
T Consensus 125 ~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~ 195 (296)
T PRK15461 125 SDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL 195 (296)
T ss_pred HHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 554443322 3678885 7899999999999974 567778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCC-------C-CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHH
Q 011641 241 GANVSQVAFAVGTDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~-------~-~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
|+|++.++++++..+... . .++ .+.++|....+.||+.+..+.|++.|++ .++.+.+
T Consensus 196 Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~ 262 (296)
T PRK15461 196 GLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAAS 262 (296)
T ss_pred CCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHH
Confidence 999999999997543110 1 121 2345788889999999999999999998 4554443
No 13
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=6.4e-28 Score=240.41 Aligned_cols=250 Identities=18% Similarity=0.242 Sum_probs=200.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. +...++++++++++||
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 58999999999999999999998 99999999999998877642 2345677888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+++.+.+.+++.+ +.++++|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence 9999998642 234443 45778888999999999999999999888887643 34578998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+..+..+.. .+++|++ +++++.++++++.++. ..++.++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544332 4778875 7789999999999863 456677889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++++.+.+....-. .++++ .+.+||...++.||..++.+++++.|++ .++++.+.
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 263 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVM 263 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999999754210 11111 2346789999999999999999999998 55555544
No 14
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.96 E-value=5.8e-28 Score=240.11 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=196.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||+|||+|.||.+||..|+++ |++|++||+++++++.+.+. +...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA-------------------GAVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCcccCCHHHHHhcCCEE
Confidence 699999999999999999998 99999999999998887652 122345677788999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||++. .++.++ +++.+.++++++|++.||+.|++++++.+.+++.+ +.++.+|.+.
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g----~~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG----IDYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEecCCCC
Confidence 99998632 233333 45667788899999999999999999888887653 3456789877
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+..+..+.. .+++|++ ++++++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544322 4778875 7899999999999873 45666677999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 240 TGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|+|++++.++++.....++ ++. .+.+||+..|+.||+.++.+.+++.|++ .++++.+.
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~ 260 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ 260 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 99999999999985421111 111 1246799999999999999999999998 55555443
No 15
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.96 E-value=3.3e-27 Score=234.27 Aligned_cols=245 Identities=17% Similarity=0.144 Sum_probs=198.0
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEe
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVS 85 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (480)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999998 99999999999999888752 234567788889999999999
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccccc
Q 011641 86 VNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (480)
Q Consensus 86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
||++. .+++++ +++.+.++++++||++||+.|++++++.+.+++.+ ..++++|....+.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g----~~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG----AVFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEECCCCCCHH
Confidence 99642 235555 67888888999999999999999999988887653 2457899887776
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCC
Q 011641 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5544432 4678886 6789999999999873 45677788999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCCC---------C-----c--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 243 NVSQVAFAVGTDSRIGPK---------F-----L--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 243 d~~~v~~~~~~~~~~~~~---------~-----~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++++.++++..+.-++. . . .+.++|....+.||+.+..+.|++.|++ .++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 264 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR 264 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999865311110 0 1 2345677778899999999999999998 55555443
No 16
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=5.1e-27 Score=232.75 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=193.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. +.....++.++++.||+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999998 999999999875 4444321 23445677788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ .++.+.+.++++||++||+.|.+++++.+.+.+.+ . .++.+|..
T Consensus 59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~--~~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--G--DYLDAPVS 120 (292)
T ss_pred EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEEecCC
Confidence 99999964 2345554 23566678899999999999999999988887764 2 34678877
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..+.. .+++||+ ++++++++++|+.++. ..++.++.+.|..+|+++|.+.+.+++.++|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544433221 4678886 7899999999999974 5677888999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~ 298 (480)
+.|+|+++++++++..+.- +++++ .+.++|....+.||+.+..+.|++.|++ .++.+.
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~ 258 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTAT 258 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHH
Confidence 9999999999999765311 11222 2346789999999999999999999998 444443
No 17
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=223.54 Aligned_cols=241 Identities=17% Similarity=0.235 Sum_probs=198.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++||+||+|.||.+|+.+|.++ ||.|++|||+.++++.+.+. +.++..+|.|+++.||+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988763 23556789999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
||.|||+|.+. ++++ ..+...++++... |++||+.|.+.+++.+.++... ...+.+|.
T Consensus 95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV 156 (327)
T KOG0409|consen 95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV 156 (327)
T ss_pred EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence 99999987543 3333 3444555666655 8999999999999988887653 34679998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
......+..+.+ .|++||+ ++.++.+.++|+.+++ ..++.+..+.+..+|+.+|...+.++..+.|...|+
T Consensus 157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la 227 (327)
T KOG0409|consen 157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA 227 (327)
T ss_pred cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655655554 4788875 8899999999999974 566778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCcc---------CCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLN---------ASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~---------pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+++|+|...+++++++..--++.+.+ +.+||+-..+.||+...++.+.+.+.+
T Consensus 228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999985321222333 345688889999999999999998887
No 18
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=99.94 E-value=1e-26 Score=195.76 Aligned_cols=106 Identities=42% Similarity=0.664 Sum_probs=88.2
Q ss_pred EEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHH
Q 011641 328 AVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAY 407 (480)
Q Consensus 328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (480)
+|||+|||+||+|+|+||++.|++.|.++|++|.+|||+++.+....... ..+++++++++
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE 61 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence 69999999999999999999999999999999999999999887654210 13578889999
Q ss_pred hhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 408 EATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 408 ~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
++++++||+|++|+|++|+.++|+.+...|+++++|||+||++++
T Consensus 62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 999999999999999999999999999999777799999999985
No 19
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.94 E-value=2e-24 Score=215.34 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=197.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. +.+.+.+++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999998887642 23456677776665
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++ ..++++++++.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999864 245777788888898999999999999999999888777653 345789988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+-.+..+. .+++||+ ++++++++++++.++.. ..++.++++.|..+|+++|.+...++..+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554432 3788986 78999999999998731 35677889999999999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHhcCCCCCCC--------CCccCCCCccccchhHhH---HHHHHHHHHCCCChhhHHHHHHH
Q 011641 237 CEATG--ANVSQVAFAVGTDSRIGP--------KFLNASVGFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 237 ~~~~G--id~~~v~~~~~~~~~~~~--------~~~~pg~g~gG~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+++.| +|+.+++++++.....++ .+..-...+.-..+.||. .+.++.|++.|++ .+++..++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~ 267 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASL 267 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHH
Confidence 99999 999999999985431111 111100113446778997 7888999999998 56666654
No 20
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.94 E-value=2.2e-24 Score=225.69 Aligned_cols=252 Identities=13% Similarity=0.088 Sum_probs=200.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
+++|||||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .|. ..+..+.+++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence 47899999999999999999998 99999999999999988752000 000 013356778887765
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||.+ ..++++++++.+.+.++++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 356778888999999999999999999999999888887764 35678998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ + .+++||+ ++++++++++++.++.+ ..+++++.+++..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G---~-~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG---P-SLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC---C-eEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877655443 2 5889996 78999999999998731 3567788999999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------CCc----cCCCCccccchhHhHH------HHHHHHHHCCCChh
Q 011641 233 MSALCEA-TGANVSQVAFA---VGTDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~---~~~~~~~~~------~~~----~pg~g~gG~cl~kD~~------~l~~~a~~~g~~~~ 292 (480)
...++++ +|+|++++.++ ++.++--++ ..+ ..+++|-...+.||.. .....|.++|++
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999998888 444431111 111 1355688889999999 889999999998
Q ss_pred hHH
Q 011641 293 AEY 295 (480)
Q Consensus 293 ~~~ 295 (480)
.++
T Consensus 283 ~p~ 285 (493)
T PLN02350 283 APT 285 (493)
T ss_pred ccH
Confidence 455
No 21
>PLN02858 fructose-bisphosphate aldolase
Probab=99.94 E-value=1.2e-24 Score=251.88 Aligned_cols=252 Identities=13% Similarity=0.114 Sum_probs=201.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|||||+|+||.+||.+|+++ ||+|++||+++++++.+.+. + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887642 1 234567888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||+|. .+++++ .++.+.++++++||++||+.|++++++.+.+++.+ ..+.++++|.
T Consensus 383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 9999999763 234443 45677788999999999999999999988887632 2356789998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+..+.. .+++||+ ++++++++++|+.++. ..++. +++++|+.+|+++|++.+.+++.++|++.+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544332 4788986 7899999999999874 34443 579999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++.|+|+++++++++..+.-+ ++++ .+.++|....+.||+.+..+.+++.|++ .++...+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~ 588 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH 588 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 9999999999999887553211 1122 2346788999999999999999999998 44444433
No 22
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=99.94 E-value=4.1e-26 Score=187.11 Aligned_cols=96 Identities=44% Similarity=0.710 Sum_probs=88.1
Q ss_pred chhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCC
Q 011641 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g 288 (480)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++++||++..++.||+||||+|||||+.+|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhHHh
Q 011641 289 LPEVAEYWKQVIKINDYQ 306 (480)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (480)
.+ ..++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 98 67999999999976
No 23
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.92 E-value=3e-23 Score=209.33 Aligned_cols=281 Identities=19% Similarity=0.226 Sum_probs=198.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+++.. ...+.++.. ...++++++++++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 89999999999999999999998 999999999999999988743 222222211 112467788888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CCCcchHHHHHHHHHhcCCC-CceEEeeCCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG-IKFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (480)
|+||+|||++ .++++++++.+.++++++|+..+ |+.+.+.+.+.+.+++..+. ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 35778889999888889887776 88888777777777664321 1345667787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------hhhhHh
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLAAN 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N 220 (480)
...+..+ ..+..+++++. +.+..++++++|+..+. .+....+....+| .|+.+|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6543221 12233445554 37789999999997652 3344456554444 788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CCCccCCCCccc--------------cchhHhHHHH
Q 011641 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~----~~~--~~~~~pg~g~gG--------------~cl~kD~~~l 280 (480)
...++..+.++|+..+|+++|+|++.+.+.++... ..+ .+...||.-++. .-..||...+
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 99999999999999999999999999988754320 001 111112221222 2346999999
Q ss_pred HHHHHHCCCChhhHHHHHHHH--HhHHhHHHHHHHHH
Q 011641 281 VYICECNGLPEVAEYWKQVIK--INDYQKSRFVNRVV 315 (480)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~ 315 (480)
.++++++|++ .++.+.+.+ .|+.-|+.+++++.
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM 323 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 9999999998 566666554 35566776666653
No 24
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.92 E-value=1.1e-22 Score=203.03 Aligned_cols=267 Identities=16% Similarity=0.140 Sum_probs=199.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. +.+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 7999999999999999999998 99999999999999887642 24556677776664
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++. .++++++.+.+.+++++++|+.||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence 699999998641 34667788888899999999999999999888887777654 344689988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC---CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE---DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+..+..+. .+++||+ ++++++++++|+.+... ..++.++.+++..+|+++|.+...++..+.|...
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERGY----CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554331 4788986 78999999999998731 3567788999999999999999999999999999
Q ss_pred HHHH--hCCCHHHHHHHhcCCCCCCCCCc-------cCCCCcc-ccchhHh---HHHHHHHHHHCCCChhhHHHHHHHH-
Q 011641 236 LCEA--TGANVSQVAFAVGTDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVAEYWKQVIK- 301 (480)
Q Consensus 236 l~~~--~Gid~~~v~~~~~~~~~~~~~~~-------~pg~g~g-G~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~~~- 301 (480)
++++ .|+|+.+++++++....+++.++ .-.+.+. ..-+-|| .+.....|.+.|++ .+.+..+..
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~ 270 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM 270 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999 99999999999986532221111 1112221 1123455 47788889999988 555555321
Q ss_pred -----HhHHhHHHHHHHHHHHh
Q 011641 302 -----INDYQKSRFVNRVVASM 318 (480)
Q Consensus 302 -----~N~~~~~~~~~~~~~~l 318 (480)
.+...+...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHhccCCCcHHHHHHHHHHhc
Confidence 12234555555544444
No 25
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.89 E-value=4.5e-21 Score=191.10 Aligned_cols=265 Identities=15% Similarity=0.148 Sum_probs=192.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH---hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+... ....++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g~-------------------~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDRT-------------------TGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-------------------cccCCHHHHHhhcCC
Confidence 7999999999999999999998 9999999999999998876321 11233333 3457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||+. .++++++++.+.++++++||+.||..+.++.++.+.+++.+ +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence 89999999853 35778899999999999999999998888888777776643 345678876
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+..+..+ ..+++||+ +++++.++++|+.+... ..++.++.+++..+|+++|.+...++..+.|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444433 24788986 78999999999998742 35677889999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCCCCc---------cCCC-Ccccc-chhHhHHHHHHHHHHCCCChhhHHHHHHH---
Q 011641 237 CEAT--GANVSQVAFAVGTDSRIGPKFL---------NASV-GFGGS-CFQKDILNLVYICECNGLPEVAEYWKQVI--- 300 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~~~~~---------~pg~-g~gG~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++. |+|.+++.++++...-+.+.++ .|.. .|-.. --.+|.+..+..|.+.|+| .+.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~ 269 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR 269 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 9997 5799999999987642222221 1110 11111 1234556677778888888 45555433
Q ss_pred --HHhH-HhHHHHHHHHHHH
Q 011641 301 --KIND-YQKSRFVNRVVAS 317 (480)
Q Consensus 301 --~~N~-~~~~~~~~~~~~~ 317 (480)
..+. ..|..+++.....
T Consensus 270 ~~~~~~~~~~~~~~~~~r~~ 289 (298)
T TIGR00872 270 FASRDLDDFANKVLAALRKE 289 (298)
T ss_pred HHhCCCCCcHHHHHHHHHHh
Confidence 1222 4455555544333
No 26
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.89 E-value=1.8e-21 Score=203.64 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=172.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|++|+|||+|.||.+||.+|+++ ||+|++||+++++++.+++.... ++ ..+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence 68999999999999999999998 99999999999999988752100 00 12456778888775
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||.+ ..++++++++.+.+.++++||+.||..+..+.+..+.+.+.+ +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence 589999998853 357888899999999999999999998877777766666653 35678998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ +.+++||+ ++++++++++|+.+..+ ...+.++.+++..+|+++|.+.+..+..+.|
T Consensus 128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 8776555433 25889996 88999999999998742 1467788899999999999999999999999
Q ss_pred HHHHHH-HhCCCHHHHHHHhc
Q 011641 233 MSALCE-ATGANVSQVAFAVG 252 (480)
Q Consensus 233 ~~~l~~-~~Gid~~~v~~~~~ 252 (480)
...+++ +.|+|..++.+++.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 79999999988883
No 27
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=3e-20 Score=182.20 Aligned_cols=220 Identities=24% Similarity=0.299 Sum_probs=178.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||.|.||+++|..|+++ ||+|.+|.++++.++++++. .++-|.|+.. ...++.+++|+++++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 3555666542 245789999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+|+++||+ ..++++++++.+.++++.+++..|. +.++|.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 999999996 3578999999889999998888875 577888889898887654333788999998
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-----------------hhhHh
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELS-----------------KLAAN 220 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~-----------------Kl~~N 220 (480)
..+-.. ..|+.+++++. +++..++++.+|++- ..++ ...|+...|.. ++-.|
T Consensus 138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~--~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSP--YFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCC--cEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 776321 34667888887 588889999999873 2344 44576655544 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+-.++....++||.++...+|.+++++..+.+.
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 888899999999999999999999888777664
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.85 E-value=1.1e-20 Score=171.75 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=122.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. +.+...+++++++.||
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999998 99999999999999988753 3678899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHH--HHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARV--IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||.+ ..+++++.+ +.+.+++++++|++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 456888888 999999999999999999999999999888754 567788887
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
..+..+..+.. .+++||+ ++++++++++|+.++.
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK 155 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence 66544443322 4788986 7899999999999863
No 29
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.85 E-value=7.8e-20 Score=191.38 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=165.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh---ccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---SEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (480)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... + ..+..++++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~----g----------~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK----G----------KKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC----C----------CCceecCCHHHHHhhcCCC
Confidence 489999999999999999998 99999999999999988752100 0 0134455666644 468
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ ..++++++++.+.++++++||+.||+.+..+.+..+.+.+.+ +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence 9999999853 346778899999999999999999987777776666666543 3567899887
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
++..+..+. .+++||+ ++++++++++|+.+..+ ...+.++.+++..+|+++|.+.+..+..+.|..
T Consensus 127 G~~gA~~G~----~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKGP----SIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcCC----cCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765554432 4788986 78999999999998742 135778889999999999999999999999999
Q ss_pred HHHH-HhCCCHHHHHHHh
Q 011641 235 ALCE-ATGANVSQVAFAV 251 (480)
Q Consensus 235 ~l~~-~~Gid~~~v~~~~ 251 (480)
.+++ +.|+|..++.+++
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 7999999999888
No 30
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.84 E-value=2.7e-19 Score=180.91 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|.||.++|..|+++ ||+|++|++++++++.+++.+ ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999998 999999999999998888532 112212210 012366778888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcch--HHHHHHHHHhcCCCCceEEeeCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKT--AEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
|+||+|||+. .+++++ +.++++.+++..++ +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999853 123333 45567778887777 56554 5667777654110 123445677
Q ss_pred ccccccccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-----------------chhHHHhhhh
Q 011641 157 EFLAEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-----------------LWSAELSKLA 218 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~-~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-----------------~~~ae~~Kl~ 218 (480)
....+...- .+. .++.|++ ++..++++++|+..+. ..+...| .+.+...|+.
T Consensus 136 ~~a~~~~~~----~~~~~~~~~~~-----~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIARF----LPAATVVASPE-----PGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHcC----CCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 655442211 111 2444443 7789999999998652 2222222 3455667888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCCC-----ccC-------CCCccccchhHhHHH
Q 011641 219 ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD-------SRIGPKF-----LNA-------SVGFGGSCFQKDILN 279 (480)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-------~~~~~~~-----~~p-------g~g~gG~cl~kD~~~ 279 (480)
+|...++..+.++|+..+++++|+|++++++.++.. ++.+.++ +.. .++|...-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 999999999999999999999999999999988741 1111111 111 123455567899999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHH--hHHhHHHHHHHHH
Q 011641 280 LVYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVV 315 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
+..++++.|++ .++++.+.++ |+.-|+...+.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999987 5666665543 3345666666554
No 31
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.5e-17 Score=165.01 Aligned_cols=247 Identities=16% Similarity=0.075 Sum_probs=164.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----------CCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|||+|.||.++|..|+++ |++|++||++++.++..++.. -.+.+...+.. .+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence 68999999999999999999998 999999999998877643210 00000001111 13578899
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF 150 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
++++++++||+|++|+|... ......++.+.+..+++.++ .+||.+ -....+.+.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99988899999999998542 12345666776666655544 445543 3455565555332 23
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++..+|-. |.... +-..++++.. +++++++.++++++.++. .++++.....+- +.|- +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~--t~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPW--TAPATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence 56667753 22111 1123555432 258899999999999873 455554333332 4442 466899
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCCC-----CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTDSRI-----GPKFL--NASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~~~~-----~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+|+..++++.|+|++++.+++...... |+..+ ..++||-...+.||..+..+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 999999999999999999999765322 21111 2335566778899999999998888876
No 32
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.79 E-value=1e-17 Score=174.85 Aligned_cols=197 Identities=13% Similarity=0.158 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---CcEEEEeccC
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE---ADIVFVSVNT 88 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt 88 (480)
||.+||.+|+++ ||+|.+|||++++++.+.+.... ..+++.+.+++++++. +|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 0136677888887764 8999999996
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccccccccccc
Q 011641 89 PTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL 168 (480)
Q Consensus 89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~ 168 (480)
+ ..++++++++.+.+.++++||+.||+.+..+++..+.+++.+ +.++.+|...++..+..+
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence 4 356788899999999999999999998888888877777654 356789988876555443
Q ss_pred CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH-HhC
Q 011641 169 FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE-ATG 241 (480)
Q Consensus 169 ~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~G 241 (480)
+.+++||+ ++++++++++|+.+..+. ..++++.+++..+|+++|.+.+..+..+.|...+++ ++|
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G 197 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG 197 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 26889996 889999999999987421 267788899999999999999999999999999999 599
Q ss_pred CCHHHHHHHh
Q 011641 242 ANVSQVAFAV 251 (480)
Q Consensus 242 id~~~v~~~~ 251 (480)
+|..++.+++
T Consensus 198 l~~~~l~~v~ 207 (459)
T PRK09287 198 LSAEEIADVF 207 (459)
T ss_pred CCHHHHHHHH
Confidence 9999998888
No 33
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=1.2e-17 Score=167.40 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=168.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999998 999999999742 245567889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
||+|+|+. .++++++++.++ ++++++|+..|+ +.|.+.+.+.+.+........+.++.+|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 356777888764 677888888776 7777766666655543222233344666543
Q ss_pred cccccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-----------------HHHhhhhHhH
Q 011641 160 AEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-----------------AELSKLAANA 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~-~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~-----------------ae~~Kl~~N~ 221 (480)
.+ +.. ..+. .++.|++ .+..+.++++|+..+. ..+...|+.. +...|+..|.
T Consensus 116 ~e---i~~-~~~~~~~~ag~~-----~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~ 185 (308)
T PRK14619 116 KE---IQQ-GLPAATVVASRD-----LAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNA 185 (308)
T ss_pred HH---Hhc-CCCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccH
Confidence 22 000 0111 2444443 7889999999998641 2333344322 2334588899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-CCC------CCCCccCCCCccccch----------------hHhHH
Q 011641 222 FLAQRISSVNAMSALCEATGANVSQVAFAVGTD-SRI------GPKFLNASVGFGGSCF----------------QKDIL 278 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-~~~------~~~~~~pg~g~gG~cl----------------~kD~~ 278 (480)
..++....++|+..+++++|+|+..+++..+.. ... +.++ .+ ||...-. .||..
T Consensus 186 ~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~~--g~~l~~g~~~~~~~~~~~~~~eG~~~~~ 262 (308)
T PRK14619 186 KAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-QV--GYGLAQGKSLEQILAELEGTAEGVNTAN 262 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-HH--HHHHHCCCCHHHHHHhcCCEeecHHHHH
Confidence 999999999999999999999999998753321 100 1111 22 2211122 68999
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHH--hHHhHHHHHHHHHH
Q 011641 279 NLVYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVVA 316 (480)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~ 316 (480)
.+.+++++.|++ .++.+.+.++ |+--|+.+++.+++
T Consensus 263 ~~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 263 VLVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME 300 (308)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 999999999998 6676665543 44456666666543
No 34
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=1.6e-17 Score=168.52 Aligned_cols=220 Identities=17% Similarity=0.125 Sum_probs=163.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCC-cCC-ChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEP-GLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~-~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||+++|..|+++ | +|++|.++++.++.+++.+... +.+ +. . ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 6889999999999999865322 222 11 0 12357889999888999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||+. +++++++++.+.++++++|+.. -.++.++.+.+.+.+++..++..+.+..+|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999852 4688999999999888755433 3567776666666666543223456678887
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH----------------
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------- 221 (480)
+..+... ..+..+++|+. +++..+.++++|+.-. ...+...|+...||.|.+.|+
T Consensus 143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7654211 12334667776 4678899999998753 234455799999999987665
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 222 -FLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 222 -~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
..++....++|+.++++.+|.++++++...+.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 44667788999999999999999988877664
No 35
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.78 E-value=3.4e-17 Score=165.16 Aligned_cols=257 Identities=12% Similarity=0.015 Sum_probs=182.2
Q ss_pred cEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHH-----HHHcCCCCCcCCChHH
Q 011641 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~ 56 (480)
|||.|.|.|+ -|.+||.+|+++ ||+|++||++++..+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~~~~l~~------------ 66 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEELWKKVED------------ 66 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHHHHHHHH------------
Confidence 8999999994 589999999998 999999999987532 2221
Q ss_pred HHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH-H
Q 011641 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-E 135 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~ 135 (480)
.+++++++..+++++||+||+|+|++. .++++++++.+.++++++|++.||+++.+. +
T Consensus 67 -------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~ 125 (342)
T PRK12557 67 -------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYY 125 (342)
T ss_pred -------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHH
Confidence 246777888888899999999998531 357788899999999999999999988876 6
Q ss_pred HHHHHHHhcCCCCceEEeeCCcc--ccccccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 136 AIEKILTHNSKGIKFQILSNPEF--LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 136 ~l~~~l~~~~~g~~~~v~~~Pe~--~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.+.+.+........+. .+.|-. ..++... .++.|+. ....+++.+++++++++.++ ..+++.+.+
T Consensus 126 ~l~~~l~~~~~~~gi~-~~~p~~v~Gae~g~l-------~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g 195 (342)
T PRK12557 126 SLEGELRTKRKDVGIS-SMHPAAVPGTPQHGH-------YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPAD 195 (342)
T ss_pred HHHHHhcccccccCee-ecCCccccccccchh-------eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHH
Confidence 6666664321111111 112321 1222211 2444431 11124788899999999986 356666789
Q ss_pred hHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 211 ~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
.+..+|+++|.+.++.++...|...++++.|.++.++.+-+....-.+..-+.-.-|+.|--=.-||..|+..|++..+.
T Consensus 196 ~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (342)
T PRK12557 196 VVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLL 275 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcc
Confidence 99999999999999999999999999999999999998877654322222221122333333334889999999998876
Q ss_pred hhhHHHHHHHHHh
Q 011641 291 EVAEYWKQVIKIN 303 (480)
Q Consensus 291 ~~~~~~~~~~~~N 303 (480)
+..+.+..++++=
T Consensus 276 ~~~~~~~~~~~~~ 288 (342)
T PRK12557 276 EKQKDLDAALEIL 288 (342)
T ss_pred hhhhhHHHHHHHH
Confidence 6566676666543
No 36
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=4.7e-17 Score=165.41 Aligned_cols=261 Identities=18% Similarity=0.194 Sum_probs=165.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcC-CChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYE-PGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e-~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++. .+.+++....+.. .+.+.. ...++++++++.+ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 68999999999999999999998 999999999754 5777764433322 111110 0113456677764 57899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+.++....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 256778888888888877654 4566666667666643210 000011111333
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH-------------
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR------------- 226 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (480)
.||....... .++.+|.. +..+.++++|+..+. ...+..|+..+.|.|++.|++..+.
T Consensus 138 ~pg~~~~~~~--g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQGTS--GALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEecCC--CceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 4554432211 23555532 346788899987652 3556679999999999999754444
Q ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHhcCCC--------C----CCCCCccCCCCccccchhHhHH---------
Q 011641 227 -------ISSVNAMSALCEATGANVSQVAFAVGTDS--------R----IGPKFLNASVGFGGSCFQKDIL--------- 278 (480)
Q Consensus 227 -------ia~~nE~~~l~~~~Gid~~~v~~~~~~~~--------~----~~~~~~~pg~g~gG~cl~kD~~--------- 278 (480)
...+.|...++++.|+++..+.++..... . ....+...... ....+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 37899999999999998654332221110 0 00001110111 1356899999
Q ss_pred ---HHHHHHHHCCCChhhHHHH
Q 011641 279 ---NLVYICECNGLPEVAEYWK 297 (480)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~ 297 (480)
++++.|+++|++ .++.+
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~ 307 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNA 307 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHH
Confidence 799999999998 44444
No 37
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.76 E-value=4.6e-17 Score=164.04 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=163.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC--------CeEEEEEC-----CHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
||+|||+|.||+++|..|+++ | |+|.+|.+ +++..+.+++.+ ++.+.|++. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 777888888754 344445532 1246889
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcc--hHHHHHHHHHhcC
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~ 145 (480)
++|+++++++||+||++||+ ..++++++++.++++++++++..+. +.+. +...+.+++++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 3578889999999988887776654 4544 6666777776644
Q ss_pred CCCceEEeeCCccccccccccccCCCCeEEEecCCCcch----HHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-----
Q 011641 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG----QKAVKALKDVYAHWVPEDRI-LTTNLWSAELS----- 215 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~----- 215 (480)
+..+.++++|.+..+-.. ..|..+++++. + .+..+.++++|++-. .++ ...|+...|+.
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~~--frv~~s~Dv~GvEl~galKN 206 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRPY--FRVNVVDDVAGVEIAGALKN 206 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCCC--EEEEEcCCcccchhhHHHHH
Confidence 346778899988765321 34566778876 4 678899999998632 334 34576665554
Q ss_pred ------------hhhHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 011641 216 ------------KLAANAFLAQRISSVNAMSALCEATGANVS--QVAFAVGT 253 (480)
Q Consensus 216 ------------Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~ 253 (480)
++-.|+..++....++||.++++.+|.+++ +++...+.
T Consensus 207 v~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 207 VVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 355778888999999999999999998766 66655553
No 38
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.76 E-value=5.1e-17 Score=164.83 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=164.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-------CeEEEEECCHH-----HHHHHHcC-CCCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++. .++.+.|++. ...++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999987 48888864 3555667663 2357899
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh--hCCCCcEEEEecC-CCcchH--HHHHHHHHh
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~ST-v~~gt~--~~l~~~l~~ 143 (480)
++|++++++++|+|+++||+ ..++++++++.+ .++++.+||..+. +.+.+. ..+.+++++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 246888999988 7777766665543 444432 445666655
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-------
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELS------- 215 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~------- 215 (480)
.. +..+.++++|.+..+-.. ..|..+++++. +.+..+.++++|++-. .++ ...|+...|+.
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~~--frvy~s~Dv~GvEl~galKNvi 217 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRPY--FKINCVPDVIGVEVCGALKNII 217 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCc--EEEEEcCCcccchhhHHHHHHH
Confidence 43 235678899988765321 34667888887 5788899999998632 334 34576655544
Q ss_pred ----------hhhHhHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHhcCC
Q 011641 216 ----------KLAANAFLAQRISSVNAMSALCEATGA--NVSQVAFAVGTD 254 (480)
Q Consensus 216 ----------Kl~~N~~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~~~~~~ 254 (480)
++-.|+..++....++||.++++.+|. ++++++...+..
T Consensus 218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~G 268 (365)
T PTZ00345 218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLA 268 (365)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHh
Confidence 456788889999999999999999974 888888766643
No 39
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=1.2e-15 Score=154.21 Aligned_cols=215 Identities=16% Similarity=0.217 Sum_probs=144.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCC-CCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.+++.+. ..+.++.. ...++++++++.+++ .++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999998 9999999999999999987432 21122210 113567888888766 589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
|+||+|||+. .+.++++++.+ .+.+++.|+ ....+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999852 46788999988 887776554 333443332212222333322112234455776
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH----------------
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------- 221 (480)
+..+... ..+..+++++. +.+..+.+.++|+.-. .......|+...+|.|++.|+
T Consensus 138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~-~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN-LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC-eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5432211 13445666665 3556677888887643 123445699999999998776
Q ss_pred -HHHHHHHHHHHHHHHHHHhCC--CHHHHH
Q 011641 222 -FLAQRISSVNAMSALCEATGA--NVSQVA 248 (480)
Q Consensus 222 -~~~~~ia~~nE~~~l~~~~Gi--d~~~v~ 248 (480)
..++....++|+..+++++|. +.++++
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 344556789999999999987 777775
No 40
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1.1e-16 Score=158.98 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=146.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChH-----HHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-----GVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||.++|..|+++ |++|++||++++.++.+++...++.+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999998 999999999999998876532111111100 00000012457888999888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEEee
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+++||+||+|+|++. .....++.++.+.+++++++ +++||+++..... .++....-...+..
T Consensus 79 ~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~- 141 (288)
T PRK09260 79 VADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFF- 141 (288)
T ss_pred hcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecC-
Confidence 999999999999642 12246677888889999876 7889998865333 33221110011222
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
+|....+ + ..|+++..+ +++++++++++++.++. .++++. +...++.| .+..+++||.+
T Consensus 142 ~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~-----d~~Gf~~n---Rl~~~~~~ea~ 200 (288)
T PRK09260 142 NPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVN-----EFPGFVTS---RISALVGNEAF 200 (288)
T ss_pred CCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEec-----CcccHHHH---HHHHHHHHHHH
Confidence 5654332 1 235666432 58899999999999873 455553 44456666 56678999999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011641 235 ALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+.++...+++++..++...
T Consensus 201 ~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 201 YMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHcCCCCHHHHHHHHHhC
Confidence 99988668899998888544
No 41
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.72 E-value=5.9e-16 Score=164.52 Aligned_cols=207 Identities=19% Similarity=0.200 Sum_probs=142.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-------CCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-------QLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+|||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. ...+....+ ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL------PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh------hhhhceEeeCCHH
Confidence 47999999999999999999998 99999999999988765421 000000000 0124578899998
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEe
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
+++++||+||+|+|+.. +++ ..+++++.+.+++++ |+.+||..+..+ .+.+.+.... ..+.
T Consensus 76 ea~~~aD~Vieavpe~~-----------~vk--~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~----r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DLK--RRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPE----RLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HHH--HHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcc----eEEE
Confidence 88999999999998642 222 456677888888776 456777765543 4444443322 2344
Q ss_pred eCC---ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHH-HHHHH
Q 011641 154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLA-QRISS 229 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~-~~ia~ 229 (480)
.+| ....+ -..++++..+ ++++.++++++|+.++. .+++.. |.+.|.... +..++
T Consensus 137 ~hP~nP~~~~~----------Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 137 AHPYNPVYLLP----------LVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL 195 (495)
T ss_pred EecCCCcccCc----------eEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence 555 33222 1235666532 68899999999999874 344443 455554443 44556
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
++|+..++++.|+|++++.++++..+
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~ 221 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSF 221 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhcc
Confidence 79999999999999999999998775
No 42
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=4.7e-15 Score=137.16 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=154.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh---hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
|+|+.||||.||..+..+|.+. ||+|++||+|++.++.+.... .+.++++++- +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 8999999999999999999998 999999999999999988632 2222333332 345
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
.-+|.++||... .+.++++++++.|.++.+||+-....-..+.+-.+.+++.+ ++++.+-..
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg----i~flD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG----IHFLDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC----CeEEeccCC
Confidence 678999999531 24788999999999999999754322222222233455443 334444333
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
.+.--+..+ -.+||||+ +++.+++.++|+.+.++ .-.+.+..+++..+|+++|-.-.-.++...|-..+
T Consensus 122 GG~~G~~~G----~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGVWGAERG----YCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCchhhhcC----ceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 332222222 24789996 78999999999998652 23456788999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCC
Q 011641 237 CEAT--GANVSQVAFAVGTDSRIGP 259 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~~ 259 (480)
.++. ..|..+|.+..+..+-|++
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrS 217 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRS 217 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHH
Confidence 8874 6889999999998875543
No 43
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=8.1e-16 Score=153.62 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=144.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-----hhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-----QCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||..+|.+|+.+ |++|++||++++..+.+.+... ..++.+.+ ....++++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence 36899999999999999999998 9999999999987765432100 00000100 0012467889999988
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCceEEe
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQIL 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+++||+|+.|+|.. .+++ ..+++++.+.+++++ |+.+||.+. ....+.+.+..... +.+|
T Consensus 81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~Hf--- 142 (321)
T PRK07066 81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHP--- 142 (321)
T ss_pred hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEec---
Confidence 99999999999863 3444 567789999999888 445566532 22334443332111 1111
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
|+|.+..|- -.|| .+.. +++++.+.+.++++.+++ .++.+. -+.-.++.| .+..++++|.
T Consensus 143 fnP~~~~pL---------VEVv-~g~~--T~~e~~~~~~~f~~~lGk-~pV~v~----kd~pGFi~N---Rl~~a~~~EA 202 (321)
T PRK07066 143 FNPVYLLPL---------VEVL-GGER--TAPEAVDAAMGIYRALGM-RPLHVR----KEVPGFIAD---RLLEALWREA 202 (321)
T ss_pred CCccccCce---------EEEe-CCCC--CCHHHHHHHHHHHHHcCC-EeEecC----CCCccHHHH---HHHHHHHHHH
Confidence 455544431 1254 3433 379999999999999873 455542 134457777 6779999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCC
Q 011641 234 SALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
..+.++..++++++..++...+
T Consensus 203 ~~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCC
Confidence 9999998899999999987664
No 44
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.68 E-value=3.1e-15 Score=147.87 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=129.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.++|..|+++ |++|++||++++..+.+.+.. .+ ..+++. +++++||
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~-~~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDL-SLLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCH-hHhcCCC
Confidence 7999999999999999999998 999999999999888766421 11 233444 3578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc--
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-- 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-- 158 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.+...+.+.+... . ++..+|-.
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999999842 34567788988888899998888877655444432211 1 34445543
Q ss_pred --ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 159 --LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....+..+++....+++ +.....+++..+.++++++.++. ..+..+..+..+.++++.|....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333334444443333333 22233367889999999999863 33445566788999999998776666665554
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.68 E-value=1.1e-14 Score=143.53 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|.++ |+ +|++||+++++.+.+.+.. ....+++++++ .+|
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~g------------------~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALELG------------------LVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHCC------------------CCcccCCHHHH-hcC
Confidence 6999999999999999999988 64 7999999999887765421 11123455664 459
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|||.. .+.++++++.+ ++++++|++.+++.....+ .+.+... .. ++..+|..
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~----~~~~~~~-~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKIIE----SVPKHIR-KN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHHH----HHHHhcC-CC-EEecCCcCc
Confidence 9999999853 34667788888 8889988876665433333 3332211 12 45566743
Q ss_pred ---ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.+|..+..+++....+++.. .+..+++..+.++++|+.++. .++..+..+..+.++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~-~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCD-VEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEec-CCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 34555544444333333322 122356788999999999863 344555567789999999987755555554331
Q ss_pred HHHHhCCCHHHHHHHhc
Q 011641 236 LCEATGANVSQVAFAVG 252 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~ 252 (480)
.+.|..++....+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2555555555444
No 46
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.68 E-value=8.6e-15 Score=146.42 Aligned_cols=212 Identities=19% Similarity=0.197 Sum_probs=143.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|+++++ +++++.+++....+.+++.+.. -....+++.+++.+.+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999998 999999999 8889988875444332221110 012345666665689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-cc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-LA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (480)
||+|+|++. ++++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 999999642 467888898888888776543 334555566665554321 01123333333 35
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF------------------ 222 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------ 222 (480)
+|..... .+.++.+|..+.. ..+..+.+.++|...+. ......|+..+.|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 5554433 3456778865322 23455667777776542 234567999999999998863
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCH
Q 011641 223 ---LAQRISSVNAMSALCEATGANV 244 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456678999999999999864
No 47
>PLN02712 arogenate dehydrogenase
Probab=99.68 E-value=3.3e-13 Score=147.41 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=103.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++.... ...+ -++..+++.++.+ .++|
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~-~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSL-AARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHH-HHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 89999999985542 2221 1234566777744 5799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||. ..+.++++++. +.++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999883 23567777776 56888999998876664444444444432 222 566777664
Q ss_pred cccccccccCCCCeEEEe---cCCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 160 AEGTAIQDLFNPDRVLIG---GRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG---~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.+. ...++.....++.+ +. +....+..+.+.++|+.++ .++..++++
T Consensus 172 ~e~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~e 221 (667)
T PLN02712 172 PQS-AKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCT 221 (667)
T ss_pred Ccc-ccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHH
Confidence 331 11111111222221 11 1112345667779999885 466666654
No 48
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.66 E-value=5.9e-15 Score=156.79 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=141.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH------------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN------------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..||.+|+.+ |++|++||++++.++... +|.. .+...+.. ..+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~--~~~~~~~~-----~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKL--TAEQADAA-----LARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHH-----HhCeEEe
Confidence 5799999999999999999998 999999999999888732 1211 11111111 1468899
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++++ +.+||+||.|||... +++ ..++.++...+++++++ +++||+++.. +...+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEE
Confidence 99876 789999999998642 333 44567788888889988 5889998853 3333322111
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQ 225 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|....+ + ..|+++..+ ++++++.+.++++.+++ .++++.+ ++ ++.|-+
T Consensus 142 G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrl--- 196 (507)
T PRK08268 142 GLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRA--- 196 (507)
T ss_pred EEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHH---
Confidence 2222 34433221 1 234565432 68999999999999874 5666654 33 566643
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 226 RISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++++|...++++.++|++++.+++...
T Consensus 197 l~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 197 ARPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35699999999999999999999999654
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=2.5e-14 Score=141.93 Aligned_cols=214 Identities=15% Similarity=0.117 Sum_probs=140.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC---CCCcCCC--h--HHHHhhhcCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ---LPIYEPG--L--DGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~~e~~--l--~~~~~~~~~~~l~~t~d~~ 73 (480)
++||+|||+|.||.++|..|+.+ |++|++||++++.++.+++.. .+...+. + ++... ....++++++|++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence 37999999999999999999998 999999999998877765421 0000000 0 00000 0124688999999
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEE
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+++++||+||+|+|+.. .....+++++.+.++++++| .+.||.++.. +.+.+.... . ++
T Consensus 80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~~---r-~v 139 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRPE---K-FL 139 (287)
T ss_pred HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCcc---c-EE
Confidence 88999999999998642 33467788899999988887 4556665532 222222111 1 23
Q ss_pred eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..+| ..|... .+--.++.+. .+++++.+.+.++++.++. .++.+. .+.-.++.| .+..+++||
T Consensus 140 g~Hf--~~p~~~-----~~lvevv~~~--~t~~~~~~~~~~~~~~~Gk-~pv~v~----~d~pgfi~n---Ri~~~~~~e 202 (287)
T PRK08293 140 ALHF--ANEIWK-----NNTAEIMGHP--GTDPEVFDTVVAFAKAIGM-VPIVLK----KEQPGYILN---SLLVPFLSA 202 (287)
T ss_pred EEcC--CCCCCc-----CCeEEEeCCC--CCCHHHHHHHHHHHHHcCC-eEEEec----CCCCCHhHH---HHHHHHHHH
Confidence 3333 111110 0111223332 2378999999999999863 445442 123345566 567889999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC
Q 011641 233 MSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
...+.++..++++++..++...
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999889999999888644
No 50
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.64 E-value=1e-15 Score=138.22 Aligned_cols=150 Identities=25% Similarity=0.344 Sum_probs=108.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||+|.||+++|..|+++ |++|++|.++++.++.+++.+ ++.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 899999999999999999999 999999999999999999743 334444421 12468899999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||+. .+++.++++.++++++++++..+.. ..++...+.+++++..+...+.++.+|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999863 3578999999999999988876543 4556555666666644323388899998876
Q ss_pred ccccccccCCCCeEEEecC
Q 011641 161 EGTAIQDLFNPDRVLIGGR 179 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~ 179 (480)
+-.. ..|..+++++.
T Consensus 138 Ei~~----~~pt~~~~as~ 152 (157)
T PF01210_consen 138 EIAE----GKPTAVVIASK 152 (157)
T ss_dssp HHHT----T--EEEEEEES
T ss_pred HHHc----CCCeEEEEEec
Confidence 5321 34556778876
No 51
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.63 E-value=2.1e-14 Score=152.20 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=139.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc------------CCCCCcCCChHHHHhhhcCCCEEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
+.||+|||+|.||..||.+|+++ ||+|++||++++.++...+ |... +...+.. ..+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~ 75 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT--AEECERT-----LKRLIP 75 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHH-----HhccEE
Confidence 46899999999999999999998 9999999999998875421 1110 0011111 146888
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC-
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~- 146 (480)
++++++ +.+||+||.|||... +++ +.++.++.+.+++++++. ++||+++. .+...+.....
T Consensus 76 ~~~~~~-l~~aDlVIEav~E~~-----------~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~ 138 (503)
T TIGR02279 76 VTDLHA-LADAGLVIEAIVENL-----------EVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERV 138 (503)
T ss_pred eCCHHH-hCCCCEEEEcCcCcH-----------HHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccce
Confidence 999976 789999999998642 222 456778888888888764 55666653 23333332211
Q ss_pred -CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHH
Q 011641 147 -GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQ 225 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|-...+ + ..|+++..+ ++++++.+.++++.+++ .++++.+... ++.|- +
T Consensus 139 ~G~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nr---l 194 (503)
T TIGR02279 139 AGLHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNR---V 194 (503)
T ss_pred EEEec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHH---H
Confidence 3232 34433221 1 135666433 68999999999999874 5666654222 35663 3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 226 RISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++++|...+.++.+++++++.+++...
T Consensus 195 ~~~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 195 ARPYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35799999999999999999999999754
No 52
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=5.9e-14 Score=140.90 Aligned_cols=210 Identities=16% Similarity=0.172 Sum_probs=135.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC---CCC-cCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ---LPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++.. ... .+.+... . ..+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS---A-GMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH---H-HhhceEEeCCHHHHh
Confidence 47899999999999999999998 999999999999988876520 000 0001000 0 013577888888888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++||+||+|||... .....++..+.+.++++++|+ ++|.... ...+.+.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998542 123566777888777776654 4444333 334544443211 1 222232
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-C-chhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-N-LWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~-~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
. .|..... + ..++.+.. ++++..+.+.++++.++. .++... + ++. +++|. ..++++|..
T Consensus 139 ~--~p~~~~~-l----~~i~~g~~--t~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~----~~~~~~Ea~ 199 (311)
T PRK06130 139 F--TPADVIP-L----VEVVRGDK--TSPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRI----QHALAREAI 199 (311)
T ss_pred C--CCCccCc-e----EEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHH----HHHHHHHHH
Confidence 1 1111110 1 12334332 258899999999999863 344443 2 222 45554 457899999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011641 235 ALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.++++.|+|++++.+++...
T Consensus 200 ~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 200 SLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHcCCCCHHHHHHHHHhc
Confidence 99999999999999999754
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=4.9e-14 Score=140.24 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=134.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+|.||.++|..|+.+ |++|++||++++.++.+.+. ...+.+...+.. ..+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeCC
Confidence 6899999999999999999998 99999999999988764321 001111011111 135788888
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCce
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKF 150 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
+++ +++||+||+|||+.. .....+++++.+.++++++++ ++||+++. .+.+.+.....-...
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 864 899999999998642 123566788999999998876 56666643 344443221110011
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+. +.|....++. .++.|.. +++++++.+.++++.+++ .+++..+.. .+++++ +..+++
T Consensus 141 h~-~~p~~~~~~v---------ei~~g~~---t~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~~~ 198 (292)
T PRK07530 141 HF-MNPVPVMKLV---------ELIRGIA---TDEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLPMI 198 (292)
T ss_pred ec-cCCcccCceE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHHHH
Confidence 11 2333333221 2443322 268899999999999874 455554432 444444 456778
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
||...+.++.-.++.++..++...
T Consensus 199 ~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 199 NEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999988666899998888533
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.61 E-value=4e-13 Score=140.55 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=140.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||.++|..|.++ |++|++||+++++.+.+... .++.++++..+++.+||
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998876554431 12355677777889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|.+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999999842 346778899999999999999888776666666655432 222 355667653
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|... . +....+++. .....+++..+.++++|+.++ ..+..++++ +.-|++.++....++.+...+.. ++++
T Consensus 121 p~~~--~-~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP--S-LKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc--c-cCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3221 1 222233332 222235778899999999875 456666644 67788888777777776665444 4677
Q ss_pred CCCHHHHHHHhc
Q 011641 241 GANVSQVAFAVG 252 (480)
Q Consensus 241 Gid~~~v~~~~~ 252 (480)
|.|..+....++
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888776654443
No 55
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.60 E-value=9.1e-14 Score=138.26 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=133.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc----CCC---------CCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS----DQL---------PIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~---------~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||+|.||.++|..|+++ |++|++||++++.++...+ +.. .+.+...+++ ..++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~ 76 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAI-----MARIRT 76 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHH-----HhCcEe
Confidence 5899999999999999999998 9999999999998875332 100 0001011111 135677
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++. +++++||+||+|+|++. .....+++++.+.++++++++ ++|.. -+...+...+.....
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~tsg-~~~~~la~~~~~~~r~i 140 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTSG-IMIAEIATALERKDRFI 140 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCCC-CCHHHHHhhcCCcccEE
Confidence 8887 46899999999998642 123567788888888888765 22322 233445444432211
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
+.+| +.|....++. .++-|.. +++++.+.+.++++.+++ .++.+.+....-..|+.
T Consensus 141 g~hf---~~P~~~~~~v---------Ev~~g~~---T~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~-------- 196 (291)
T PRK06035 141 GMHW---FNPAPVMKLI---------EVVRAAL---TSEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFI-------- 196 (291)
T ss_pred EEec---CCCcccCccE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHH--------
Confidence 1111 2343333321 2333322 368999999999999874 56666655554444444
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
..++||+..+.++.-++++++..++..
T Consensus 197 ~~~~~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 197 EGWLLEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhh
Confidence 457789999998866789999998854
No 56
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=1.7e-13 Score=135.72 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=135.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH-----------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN-----------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~-----------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|+||+|||+|+||.++|..|+.+ |++|++||+++++++... +.. .+.....+.. ..+++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~-----~~~l~~~ 74 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKG-KMTEADKEAA-----LARITGT 74 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH-----HhCeEEe
Confidence 46899999999999999999998 999999999999885321 110 0000001111 1368888
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCc
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+|+++ +++||+||+|+|... ..-.++++.+.+.++++++|+ ++|.....+ .+.+.+.....
T Consensus 75 ~~~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~r--- 135 (282)
T PRK05808 75 TDLDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPDK--- 135 (282)
T ss_pred CCHHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCcc---
Confidence 89865 899999999998421 222578889999999998773 334333332 45554432211
Q ss_pred eEEe---eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 150 FQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 150 ~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
++. +.|....++. .++-|.. ++++..+.+.++++.++. .++.+. +.-.++.| .+.
T Consensus 136 -~ig~h~~~P~~~~~~v---------ev~~g~~---t~~e~~~~~~~l~~~lGk-~pv~~~-----d~~g~i~~---Ri~ 193 (282)
T PRK05808 136 -VIGMHFFNPVPVMKLV---------EIIRGLA---TSDATHEAVEALAKKIGK-TPVEVK-----NAPGFVVN---RIL 193 (282)
T ss_pred -eEEeeccCCcccCccE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eeEEec-----CccChHHH---HHH
Confidence 122 2333333221 1333322 368999999999999874 455543 33345666 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+++||...+.++.-.+++++..++...
T Consensus 194 ~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 194 IPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 8999999999988778899999888543
No 57
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=9.2e-14 Score=137.64 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=136.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH------------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN------------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..+|..|+.+ |++|++||++++.++... +|.. .+...+.. ..+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~-----~~~l~~~ 76 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKL--TERERDAA-----LARLRFT 76 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccC--ChhhHHHH-----HhCeEee
Confidence 5899999999999999999998 999999999999887622 1211 11111111 2478899
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecCC-CcchHHHHHHHHHhcCC-
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKSTV-PVKTAEAIEKILTHNSK- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv-~~gt~~~l~~~l~~~~~- 146 (480)
+|++ ++++||+||.|+|.. .+++ ..++..+.+.+ +++++++..||. ++.. +...+.....
T Consensus 77 ~~~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~---la~~~~~~~r~ 139 (286)
T PRK07819 77 TDLG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMK---LAAATKRPGRV 139 (286)
T ss_pred CCHH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCccE
Confidence 9995 489999999999853 2333 55677888888 788888765544 4332 2222222111
Q ss_pred -CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHh-ccCCCCeEEeCCchhHHHhhhhHhHHHH
Q 011641 147 -GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA-HWVPEDRILTTNLWSAELSKLAANAFLA 224 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~~ 224 (480)
|.+| ++|....+.. .++.|..+ ++++++.+.+++. .+++ .++.+. +...++.| .
T Consensus 140 ~g~hf---~~P~~~~~lv---------Elv~~~~T---~~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~n---R 195 (286)
T PRK07819 140 LGLHF---FNPVPVLPLV---------ELVPTLVT---SEATVARAEEFASDVLGK-QVVRAQ-----DRSGFVVN---A 195 (286)
T ss_pred EEEec---CCCcccCceE---------EEeCCCCC---CHHHHHHHHHHHHHhCCC-CceEec-----CCCChHHH---H
Confidence 2222 3444433321 35555443 6899999999988 4663 455543 33455666 6
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 225 QRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+..+++||...+.++...+++++..++...
T Consensus 196 i~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 196 LLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 778999999999988778899999888544
No 58
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.56 E-value=4.2e-13 Score=133.71 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=133.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++||+|||+|.||.++|..|+.+ |++|++||+++++++...+. .-.+.+...+.. .+++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADAT-----LGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhceEeeC
Confidence 36799999999999999999998 99999999999887643210 000000000011 13567777
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.+ ++++||+||+|||... + ....+++++.+.++++++|+ +.||+++.. +++.+.....-..
T Consensus 77 ~~~-~~~~aD~Vieav~e~~-----------~--~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g 139 (295)
T PLN02545 77 NLE-ELRDADFIIEAIVESE-----------D--LKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIG 139 (295)
T ss_pred CHH-HhCCCCEEEEcCccCH-----------H--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEE
Confidence 875 5899999999998632 2 23566778888889888875 677776554 3333332111001
Q ss_pred eEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
.+. ++|-...+. ..++++. .++++..+.++++++.++. .++.+.+.. .++.| .+..++
T Consensus 140 ~h~-~~pp~~~~l----------veiv~g~--~t~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~~ 197 (295)
T PLN02545 140 MHF-MNPPPIMKL----------VEIIRGA--DTSDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMPM 197 (295)
T ss_pred Eec-cCCcccCce----------EEEeCCC--CCCHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHHH
Confidence 111 223222111 1234432 2268899999999999874 344444321 23455 566778
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+||...+.++...+++++..++...
T Consensus 198 ~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 198 INEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999999889999998887543
No 59
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.53 E-value=5.8e-13 Score=133.05 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=138.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+.+|..|+++ |++|+++++++++++.+++....+ +.+ + . ...+..+++.++ ++.+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~-~--~----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG-E--I----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC-c--e----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888654433 100 0 0 011234556665 489999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC-cccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (480)
||+|+|+.. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+... -..+.+.+ .+..
T Consensus 70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPERV--LGGVVTHAAELEG 131 (304)
T ss_pred EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCcccE--EEEEEEEeeEecC
Confidence 999998531 467888999988887766543 3345655666655533210 01122222 2344
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
|+...+.. ..++.+|..+.. .+..+.+.++|...+. ......|+..+.|.|++.|+
T Consensus 132 p~~v~~~~--~g~~~ig~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHTG--GGRLKIGEPDGE--SAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEcC--CCCEEEeCCCCC--cHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 55543322 245677865321 2346677888887542 22345689999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCH
Q 011641 222 --FLAQRISSVNAMSALCEATGANV 244 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455677999999999998764
No 60
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.53 E-value=1.5e-12 Score=133.76 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=146.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+++|+||| +|.||.++|..|.++ |++|++||++.. +++++++++|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 47899999 999999999999998 999999998521 1234567899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|.. ...++++++.+ ++++++|++.|++.+...+.+.+.+. + .++..+|-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~--~fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G--PVLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C--CEEeeCCCCC
Confidence 9999998843 23566788888 88999999988876655555443221 1 2566788665
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+-. .+ ....+++...+ ++++.+.+.++++.++ ..+..++ .+..+.+++++-. .++..+.++..+++
T Consensus 202 ~~~~---~~-~~~~vv~~~~~---~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---SL-AKQVVVVCDGR---QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---cc-CCCEEEEcCCC---CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4322 22 22234443221 4678889999999986 3555544 4567888988843 55555556666666
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhH-HHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDI-LNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~-~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
.+.|..++.+..+ +|| +|. ....+.|.+ + +.+|......|.+.. ...+.+.+.
T Consensus 270 -~~~~~~~~~~~~~-------------~~f------r~~la~~tRia~~---~--p~lw~dI~~~N~~~~-~~l~~~~~~ 323 (374)
T PRK11199 270 -ENVDLEQLLALSS-------------PIY------RLELAMVGRLFAQ---D--PQLYADIIMSSPENL-ALIKRYYQR 323 (374)
T ss_pred -cCCCHHHHHHhcC-------------hHH------HHHHHHHHHHHcC---C--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence 7788777654211 111 332 223444433 3 578998888887766 555555554
Q ss_pred h
Q 011641 318 M 318 (480)
Q Consensus 318 l 318 (480)
+
T Consensus 324 l 324 (374)
T PRK11199 324 F 324 (374)
T ss_pred H
Confidence 4
No 61
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.52 E-value=5.8e-13 Score=131.17 Aligned_cols=206 Identities=20% Similarity=0.274 Sum_probs=143.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++||+|||+|.||..+|..+|.. |++|+++|++++.++...+. ...+.+...+..+ ++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l-----~~i~~~~ 75 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAAL-----ARITPTT 75 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH-----hhccccC
Confidence 47999999999999999999996 89999999998776654321 0111111112222 4678888
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++. ++++||+||.+|+.. .|++ +.+++++..++++++|+ .+.|++++... ...+..... |
T Consensus 76 ~~~-~l~~~DlVIEAv~E~-----------levK--~~vf~~l~~~~~~~aIlASNTSsl~it~i---a~~~~rper~iG 138 (307)
T COG1250 76 DLA-ALKDADLVIEAVVED-----------LELK--KQVFAELEALAKPDAILASNTSSLSITEL---AEALKRPERFIG 138 (307)
T ss_pred chh-HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHH---HHHhCCchhEEE
Confidence 887 599999999999853 3444 78899999999999988 55567765432 222221111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||-|-. +++++.+++.++...+++ .++...| .-.++.| .+..
T Consensus 139 ~HF---fNP~~~m~L---------VEvI~g~~---T~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~N---Ril~ 194 (307)
T COG1250 139 LHF---FNPVPLMPL---------VEVIRGEK---TSDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVN---RLLA 194 (307)
T ss_pred Eec---cCCCCccee---------EEEecCCC---CCHHHHHHHHHHHHHcCC-CCEeecC-----CCceehH---hHHH
Confidence 232 466554431 13544433 368999999999999873 4444333 3346778 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|+..+.++..+++++|..++...
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999889999999999764
No 62
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.50 E-value=3.2e-12 Score=124.80 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=145.7
Q ss_pred cEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHH-----HHHcCCCCCcCCChHH
Q 011641 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~ 56 (480)
|||.|.|+|+ -|.+||.+|+++ ||+|++||+++++.+ .+.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 8999999995 588999999998 999999999987653 2332
Q ss_pred HHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+...++++.+++++||+||+|+|++ ..++++++++.+.++++++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 13456778888899999999999964 245667788999999999999999999988765
Q ss_pred -HHHHHHhcCCCCceEE-eeCCccccccccccccCCCCeEEEecCC----CcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 137 -IEKILTHNSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
+.+.|+-.. .++.+ .|+|-- .||..-++ ..++++.. ...+++..+++-++-++... ..+.. .
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~~-vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~-~~~~~-p-- 193 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPAA-VPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTGK-KAYVV-P-- 193 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCCC-CCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhCC-Ceeec-c--
Confidence 445454221 23333 356642 34432221 23344431 23367888888888888752 33322 2
Q ss_pred hHHHhhhhHh---HHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHhcCC-CCCCCCCccCCCCccccchhHhHHHHHHHHH
Q 011641 211 SAELSKLAAN---AFLAQRISSVNAMSALC-EATGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICE 285 (480)
Q Consensus 211 ~ae~~Kl~~N---~~~~~~ia~~nE~~~l~-~~~Gid~~~v~~~~~~~-~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~ 285 (480)
|+++--+.. ..-++.++.+-+....+ +-+|+...-+-..+... ..+ ..+.-.-|+.|--=.-||..|+..|+
T Consensus 194 -a~l~~~v~Dm~s~vta~~~~gil~y~~~~t~i~~ap~~~~~~~~~~~l~~~--a~l~~~~Gi~~~~~~l~p~~l~~sa~ 270 (341)
T TIGR01724 194 -ADVTSAVADMGSLVTAVALAGVLDYYYVGTQIINAPKEMIEKQILMTLQTM--ASLVETSGVEGMAKAINPELLVKSAR 270 (341)
T ss_pred -hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcCHHHHHhhhh
Confidence 122211111 11122222222322222 22333322111111100 000 00111112222222237788998898
Q ss_pred HCCCChhhHHHHHHHHHhHH
Q 011641 286 CNGLPEVAEYWKQVIKINDY 305 (480)
Q Consensus 286 ~~g~~~~~~~~~~~~~~N~~ 305 (480)
+..+.+..+.+..++++=+.
T Consensus 271 sM~~~~~~~~l~~~l~~l~~ 290 (341)
T TIGR01724 271 SMHLLDRQEDLDAALKIISD 290 (341)
T ss_pred hcccchHHHhHHHHHHHHHH
Confidence 88777666677776655443
No 63
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.49 E-value=3.3e-12 Score=125.38 Aligned_cols=195 Identities=11% Similarity=0.142 Sum_probs=120.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC----eEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ |+ +|++| |+++++.+.+.+. +++.+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 8999999999999999999998 77 89999 9999988776542 245667777888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+||| |. .++++++++.+.++++++||.. ++++ .+.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~---~~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT---LADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc---HHHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3577788888888888877632 3333 2333332221 11 12234
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhh--hHhHHHHHHHHHHHHH
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL--AANAFLAQRISSVNAM 233 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl--~~N~~~~~~ia~~nE~ 233 (480)
|..... .. ... .++..+.. .+++..+.++++|+.++ ..++...-..-..+-+ ....|.+..+..+.|
T Consensus 117 P~~~~~---~~--~~~-~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~e- 185 (266)
T PLN02688 117 PNTPCL---VG--EAA-SVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEALAD- 185 (266)
T ss_pred CCcHHH---Hh--Cce-EEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHH-
Confidence 432111 10 011 22222221 24778999999999986 2443321000001111 112233344444444
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 011641 234 SALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~ 253 (480)
.+.+.|+|.++..+++..
T Consensus 186 --a~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 186 --GGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred --HHHHcCCCHHHHHHHHHH
Confidence 488999999999998864
No 64
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.7e-12 Score=128.28 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=151.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH---hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
+.|||||+|.||..+|.+++++ |+.|.+|+|+.++.+.+-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 3599999999999999999999 99999999999999987653211 112333334433 3567
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
..-|+++|... +.+...++++.++|.++.|||+-.. ..+.|.++..+. .+.+ .. |+..+-.
T Consensus 68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~-FvG~GVS 129 (473)
T COG0362 68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--IL-FVGMGVS 129 (473)
T ss_pred CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--Ce-EEecccc
Confidence 78899998753 2356789999999999999998753 466777665443 4432 23 2333332
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC---C--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP---E--DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~---~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
-..+|. ++.|.+|.||. +++.+.++++|..+.- + .+.+.+.-+++..+|+++|-.-.--+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 233332 45566889996 8999999999997642 1 2245566788899999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc
Q 011641 233 MSALCEA-TGANVSQVAFAVG 252 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~~~ 252 (480)
...+.+. +|++..++.+.+.
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999988 8998877766664
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.47 E-value=7.7e-12 Score=125.38 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=110.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..|.+. | ++|++||+++++.+.+++... ....+++.++++++|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 7899999999999999999987 6 489999999998877664211 112345666778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|+|.+ .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999998853 235667788888888998887766655444444333322 112 34445643
Q ss_pred ---ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011641 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~ 208 (480)
.+++.+..+++....+++... ...+++..+.+.++++.++ ..+...+
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~ 178 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMD 178 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcC
Confidence 344444444444444545422 2224778899999999986 3555544
No 66
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.47 E-value=7.8e-12 Score=125.66 Aligned_cols=257 Identities=18% Similarity=0.110 Sum_probs=154.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||+.+|..|+++ |++|+++.+++. +.+++....+....-+.. .....++++.++ ...+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCC
Confidence 38999999999999999999998 999999999863 455543332211100000 011344555543 67899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+..+-.+..
T Consensus 75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~ 137 (313)
T PRK06249 75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG 137 (313)
T ss_pred EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence 9999998642 25677888888888776653 34455666667666644211 0001112223445
Q ss_pred ccccccccCCCCeEEEecCCCcch-----HHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH--------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEG-----QKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA-------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------- 221 (480)
||...+. ...++.+|..+.. + .+..+.+.++|+..+. ......|+...-|.|++.|+
T Consensus 138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 6654432 2234567764321 2 3556677888887542 34456799999999999885
Q ss_pred -------HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCCCCCCccCCCCccccchhHh--HHHHHHHHHHC
Q 011641 222 -------FLAQRISSVNAMSALCEATGAN-----VSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD--ILNLVYICECN 287 (480)
Q Consensus 222 -------~~~~~ia~~nE~~~l~~~~Gid-----~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD--~~~l~~~a~~~ 287 (480)
.+.+..+.+.|+..++++.|++ .+++++.+...+...+.+++ .. -.|.-..-| ..++++.++++
T Consensus 214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~q-D~-~~gr~tEid~i~G~vv~~a~~~ 291 (313)
T PRK06249 214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYH-DF-EEGRPLELEAIYANPLAAARAA 291 (313)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHH-HH-HCCCcccHHHHhhHHHHHHHHh
Confidence 3456677899999999999986 33444444332211111110 00 011222222 24678889999
Q ss_pred CCC
Q 011641 288 GLP 290 (480)
Q Consensus 288 g~~ 290 (480)
|++
T Consensus 292 Gi~ 294 (313)
T PRK06249 292 GCA 294 (313)
T ss_pred CCC
Confidence 987
No 67
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.47 E-value=1.8e-12 Score=143.45 Aligned_cols=204 Identities=17% Similarity=0.225 Sum_probs=141.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. .++++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 36899999999999999999998 99999999999876542210 001111111221 25789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.|||.. .+++ .++++++.+.+++++|+ .++||+++.. +...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVEN-----------PKVK--AAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccCc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence 9965 89999999999853 3444 78999999999999987 4556666543 3333322211 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||.|.. +++++.+.+..+++.+++ .++.+. +.-.++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------VEvv~g~~---T~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~n---Ri~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMPL---------VEVIRGEK---TSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (715)
T ss_pred Eec---CCcccccce---------EEeeCCCC---CCHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHH---HHHH
Confidence 222 455443331 13555543 268999999999999874 566553 45567788 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+++||+..+.++. +++++|..++..
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~ 529 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEK 529 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 8999999998865 999999998864
No 68
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.43 E-value=3.8e-12 Score=140.56 Aligned_cols=205 Identities=17% Similarity=0.230 Sum_probs=141.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. ..+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGV-----LNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999887653211 001111111111 24789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++ +++||+||.||+.. .+++ ++++.++.+.+++++|+. +.|++++.. +...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVEN-----------PKVK--AAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence 9854 89999999999853 3334 789999999999999874 445666543 3332322111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||-|.. +++++.+.+..++..+++ .++.+. +.-.++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------vEvv~g~~---Ts~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~N---Rl~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMPL---------VEVIRGEK---SSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (714)
T ss_pred Eec---CCCcccCce---------EeecCCCC---CCHHHHHHHHHHHHHcCC-EEEEeC-----CcccchHH---HHHH
Confidence 222 455544431 13554433 378999999999999874 556553 34567888 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|...+.++ |+++++|..++...
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~ 530 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEKQ 530 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence 899999999875 59999999988643
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.43 E-value=1.6e-11 Score=125.65 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=110.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+........+ .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999998 899999999877654433211100 01234677777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc---
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE--- 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe--- 157 (480)
||+|||.. .+.++++++.+ .++++++|++.+++.....+.+.+.+... .. ++..+|-
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~---~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDL---IR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC---Ce-EEeeCCcCcC
Confidence 99999842 35677888887 47888888887877766665554443221 12 3444563
Q ss_pred -cccccccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCc
Q 011641 158 -FLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL 209 (480)
Q Consensus 158 -~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~ 209 (480)
+.++..+..+++.. ..++..+ ...+++..+.++++++.++ ..+..++.
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~--~~~~~~~~~~v~~l~~~lG--a~~v~~~~ 174 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPD--DHTDPDAVAELKDLLSGTG--AKFVVLDA 174 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecC--CCCCHHHHHHHHHHHHHcC--CEEEECCH
Confidence 33333344444433 3344332 2235788999999999986 35544443
No 70
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.42 E-value=3.9e-12 Score=140.82 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=139.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----------CCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.++...+.. ..+.+...+. ..++++.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 407 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL 407 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence 36899999999999999999998 999999999998876533210 0011111111 125789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.||+.. .+++ .++++++.+.+++++|+ .+.||+++.. +...+..... |
T Consensus 408 ~~~-~~~~aDlViEAv~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig 470 (737)
T TIGR02441 408 DYS-GFKNADMVIEAVFED-----------LSLK--HKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG 470 (737)
T ss_pred CHH-HhccCCeehhhcccc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence 996 489999999999853 3444 78999999999999987 4556666544 3333322111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-|.. +++++.+.+..+++.+++ .++.+.+ .-.++.| .+..
T Consensus 471 ~Hf---f~P~~~m~L---------vEvv~g~~---Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~N---Ri~~ 526 (737)
T TIGR02441 471 MHY---FSPVDKMQL---------LEIITHDG---TSKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTT---RCLG 526 (737)
T ss_pred Eec---cCCcccCce---------EEEeCCCC---CCHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHH---HHHH
Confidence 222 455544331 13554433 378999999999999874 5565543 3457778 5668
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Q 011641 228 SSVNAMSALCEATGANVSQVAFAV 251 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~ 251 (480)
++++|+..+.++ |+++++|..++
T Consensus 527 ~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 527 PMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Confidence 999999999876 67999999886
No 71
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.42 E-value=6.8e-12 Score=138.51 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=138.2
Q ss_pred CcEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHh---------hhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.++...... +..++..++ .....+++.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 468999999999999999998 47 999999999998766533210 000111100 00125789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||.. .+++ .+++.++.+.+++++|+. +.|++++.. +...+..... |
T Consensus 378 ~~~-~~~~adlViEav~E~-----------l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~~g 440 (699)
T TIGR02440 378 DYR-GFKDVDIVIEAVFED-----------LALK--HQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPENVIG 440 (699)
T ss_pred ChH-HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcccEEE
Confidence 986 589999999999852 3333 789999999999999874 445666543 3333322211 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| ++|....+- ..||-|.. +++++.+.+..+++.+++ .++.+.+ .-.++.| .+..
T Consensus 441 ~Hf---fnP~~~~~l---------VEvv~g~~---T~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 496 (699)
T TIGR02440 441 LHY---FSPVEKMPL---------VEVIPHAG---TSEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA 496 (699)
T ss_pred Eec---CCccccCce---------EEEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence 222 355443331 13554433 378999999999999874 5665533 4457777 6778
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+++||...+.++ |++++++..++.
T Consensus 497 ~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 497 PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 999999999874 679999998884
No 72
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.41 E-value=2e-11 Score=120.03 Aligned_cols=202 Identities=18% Similarity=0.161 Sum_probs=123.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+|+..|.+++ ..++|+++|+++++.+.+.+. .+++.+++..+++++|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHhhC
Confidence 78999999999999999999871 123799999999998876541 0234566777778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+||| |. .+.++++++.+.++++++|| |....=+.+.+++.+.... .+ .|.
T Consensus 65 DiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~v------vR~ 118 (272)
T PRK12491 65 DILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---KV------IRV 118 (272)
T ss_pred CEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---cE------EEE
Confidence 99999998 42 35778888988888887776 3333333455666553211 11 233
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|-.+..-.... ..+..+ +..+++..+.++.+|+.++. .+.. +-..-...=-+.-+-=+....++..+...+.+
T Consensus 119 MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~ 192 (272)
T PRK12491 119 MPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVL 192 (272)
T ss_pred CCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 332221111111 122222 22356678899999999863 4433 21110111111111113445566777778888
Q ss_pred hCCCHHHHHHHhcC
Q 011641 240 TGANVSQVAFAVGT 253 (480)
Q Consensus 240 ~Gid~~~v~~~~~~ 253 (480)
.|++.++..+++..
T Consensus 193 ~Gl~~~~A~~l~~~ 206 (272)
T PRK12491 193 GGMPRKQAYKFAAQ 206 (272)
T ss_pred cCCCHHHHHHHHHH
Confidence 89998877776653
No 73
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.41 E-value=3.5e-11 Score=118.13 Aligned_cols=198 Identities=16% Similarity=0.158 Sum_probs=124.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC---CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|.||..+|..|.++ | ++|++||+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999987 7 78999999999888776520 2344567777788
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++|+||+|+|.. .+.++++++.+.+ +++|+.. +.++ .+.+++.+.. +.. .+-..|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999742 3577888888776 3455432 3232 2344444431 111 233455
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhh-hhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK-LAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (480)
.... . +......+.-+ ...+++..+.++.+|+.++ ..+...+...-...= +..+ .-+....++..+..
T Consensus 118 ~~p~---~---~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA---L---VGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD 186 (267)
T ss_pred CchH---H---HcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence 3211 0 01111122222 2235788999999999986 355554333222211 2222 12333567788888
Q ss_pred HHHHhCCCHHHHHHHhcC
Q 011641 236 LCEATGANVSQVAFAVGT 253 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~ 253 (480)
.+.+.|++.++..+++..
T Consensus 187 ~~~~~Gl~~~~a~~~~~~ 204 (267)
T PRK11880 187 AGVKLGLPREQARKLAAQ 204 (267)
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 889999999887777653
No 74
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.41 E-value=1.9e-11 Score=120.92 Aligned_cols=195 Identities=12% Similarity=0.185 Sum_probs=123.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ | ++|+++|+++ ++.+.+... .+++.+.++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~~ 63 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKELL 63 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHHH
Confidence 8999999999999999999987 6 8999999975 466666531 1245667777878
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+|||.. .+.++++++.+.++++++||.. +++.+.+.++ .+... .. .+-..
T Consensus 64 ~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~---~~-v~r~m 121 (279)
T PRK07679 64 TDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKD---VP-IIRAM 121 (279)
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCC---Ce-EEEEC
Confidence 9999999999842 2466778888888888888775 7777665444 33221 11 12223
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH--HHhhhh--HhHHHHHHHHHHH
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA--ELSKLA--ANAFLAQRISSVN 231 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~a--e~~Kl~--~N~~~~~~ia~~n 231 (480)
|... .. .. ....++.++.+ .+++..+.++++|+.++. .+... +.- ..+-+. ...| ...++.
T Consensus 122 Pn~~--~~-~~---~~~t~~~~~~~--~~~~~~~~v~~l~~~~G~--~~~v~--e~~~~~~~a~~Gsgpa~---~~~~~e 186 (279)
T PRK07679 122 PNTS--AA-IL---KSATAISPSKH--ATAEHIQTAKALFETIGL--VSVVE--EEDMHAVTALSGSGPAY---IYYVVE 186 (279)
T ss_pred CCHH--HH-Hh---cccEEEeeCCC--CCHHHHHHHHHHHHhCCc--EEEeC--HHHhhhHHHhhcCHHHH---HHHHHH
Confidence 3211 11 10 11135556542 256788999999999863 44432 110 001111 1112 233344
Q ss_pred HHHHHHHHhCCCHHHHHHHhcC
Q 011641 232 AMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~~ 253 (480)
-+...+++.|+|.++..+++..
T Consensus 187 al~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 187 AMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4444689999999888888765
No 75
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.40 E-value=1.4e-12 Score=120.24 Aligned_cols=169 Identities=20% Similarity=0.303 Sum_probs=100.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCC----C-cCCChH-HHHhhhcCCCEEEecCHHHhh
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP----I-YEPGLD-GVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~----~-~e~~l~-~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+. +.... ..+++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADA-ALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHH-HHHTEEEESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhh-hhhhcccccCHHHHh
Confidence 799999999999999999998 99999999999876654321000 0 000000 11111 124789999999865
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CCceEEe
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+||+||.|+|.. +..-+++++.+.+.+++++++. +.|++++.. +...+....+ |.+|
T Consensus 78 -~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf--- 137 (180)
T PF02737_consen 78 -DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF--- 137 (180)
T ss_dssp -TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE---
T ss_pred -hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---
Confidence 999999999852 2333789999999999999884 445555443 2222221111 2222
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT 207 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~ 207 (480)
|+|.+..+- -.|+-|.. +++++.+.+..+++.+++ .++.+.
T Consensus 138 ~~P~~~~~l---------VEvv~~~~---T~~~~~~~~~~~~~~~gk-~pv~v~ 178 (180)
T PF02737_consen 138 FNPPHLMPL---------VEVVPGPK---TSPETVDRVRALLRSLGK-TPVVVK 178 (180)
T ss_dssp -SSTTT--E---------EEEEE-TT---S-HHHHHHHHHHHHHTT--EEEEEE
T ss_pred ccccccCce---------EEEeCCCC---CCHHHHHHHHHHHHHCCC-EEEEec
Confidence 355544331 13555544 378999999999999863 555543
No 76
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.40 E-value=1.7e-10 Score=113.14 Aligned_cols=168 Identities=22% Similarity=0.261 Sum_probs=111.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE--ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH-HHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV-EKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (480)
+|+|+|+|+|.||..+|..|.++ |+.|.++ |++.+..+.-... |+ .-..+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~l-------gv----------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALEL-------GV----------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhc-------Cc----------ccccccchhhhhcc
Confidence 48999999999999999999998 8877555 4444443332211 00 01122332 45578
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||-. ...++++.+.+.++++++|++-+++.....+.+.+.+.+ .. -++..+|-
T Consensus 64 ~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~---~~-~~vg~HPM 124 (279)
T COG0287 64 EADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG---DV-RFVGGHPM 124 (279)
T ss_pred cCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccC---CC-eeEecCCC
Confidence 899999998842 457888999999999999998665554444444333322 12 35667787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
+..+ +..+++.+..+|+ ++....+.+.++.+.++|+.++ ..+..++++.
T Consensus 125 ~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~ee 173 (279)
T COG0287 125 FGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEE 173 (279)
T ss_pred CCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHH
Confidence 6554 4455666666665 4544445778999999999875 4677776553
No 77
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.40 E-value=1.3e-11 Score=136.61 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=139.3
Q ss_pred CcEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+. ...+.+...+. ...+++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDK-----QMALISGT 381 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhcEEEe
Confidence 468999999999999999999 76 99999999999876653210 00111111111 12578999
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|++ ++++||+||.|||.. .+++ +++++++.+++++++|+. ++|++++.. +...+.....
T Consensus 382 ~~~~-~~~~aDlViEav~E~-----------~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~i 444 (708)
T PRK11154 382 TDYR-GFKHADVVIEAVFED-----------LALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVI 444 (708)
T ss_pred CChH-HhccCCEEeeccccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceE
Confidence 9985 589999999999852 3333 789999999999999884 445566544 3322322111
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| |+|.+..+- ..||-|.. +++++.+.+..++..+++ .++.+.| .-.++.| .+.
T Consensus 445 g~Hf---f~P~~~~~l---------VEvv~g~~---Ts~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~ 500 (708)
T PRK11154 445 GLHY---FSPVEKMPL---------VEVIPHAK---TSAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RIL 500 (708)
T ss_pred EEec---CCccccCce---------EEEECCCC---CCHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHH
Confidence 2222 455544331 13554433 378999999999999874 4555432 3456777 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
.+++||...+.++ |++++++..++.
T Consensus 501 ~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 501 APYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 9999999999987 789999988875
No 78
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.34 E-value=9.5e-11 Score=114.52 Aligned_cols=186 Identities=12% Similarity=0.162 Sum_probs=120.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe---EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+. |+. +.++++++++.+.+.+.. +..+.+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999987 643 588999999887766421 124556788887889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+| |. .+.++++++. +.++++||. +..+-+.+.+.+.+.... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 2456666652 456777764 455555667777664321 1 23344542
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-----HHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA-----FLAQRISSVNAM 233 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~ 233 (480)
.. ...... ..+.++ . +.++++|+.++. .+...+. |...++ +.+....++.++
T Consensus 119 ~~-----a~~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~ 175 (258)
T PRK06476 119 FV-----AERKGV-TAIYPP------D---PFVAALFDALGT--AVECDSE------EEYDLLAAASALMATYFGILETA 175 (258)
T ss_pred hh-----hhCCCC-eEecCC------H---HHHHHHHHhcCC--cEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence 11 101111 122221 2 478899999863 4444322 122222 344445688899
Q ss_pred HHHHHHhCCCHHHHHHHhc
Q 011641 234 SALCEATGANVSQVAFAVG 252 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~ 252 (480)
..++++.|+|.++..+++.
T Consensus 176 ~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 176 TGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999988887775
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.31 E-value=5.3e-10 Score=111.48 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=106.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
.|+|+|||+|.||..+|..|.+. |++|++||+++.. +....- ++...++.++++ .++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCC
Confidence 37999999999999999999987 8999999998642 222110 133456777655 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||.. .+.++++++ .+.++++++|++.+++.....+.+.+.+.. +. -++..+|-+
T Consensus 94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~-~~V~~HPma 154 (304)
T PLN02256 94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EF-DILCTHPMF 154 (304)
T ss_pred CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CC-eEEecCCCC
Confidence 9999998842 346777888 567888999887766554444555444432 12 256677766
Q ss_pred ccccccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 159 LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
..+... ..+....+++... ++.++++..+.++++++.++ ..+..++++.
T Consensus 155 G~e~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 155 GPESGK--GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCCc--cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 543211 1111112333221 02225678899999999985 4666666553
No 80
>PRK07680 late competence protein ComER; Validated
Probab=99.31 E-value=1.7e-10 Score=113.66 Aligned_cols=197 Identities=11% Similarity=0.152 Sum_probs=117.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.++|..|.++ | ++|++||+++++.+.+.+.. .++..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 7899999999999999999987 6 47999999998887765410 12456677777789
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||. ..+.++++++.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357788889888888887775442 12455565554321 1223332
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
. ++.+..+. ..++.|.. .+++..+.++++|+.++. .+... +...+. .-+.-+--+....++..+..-
T Consensus 119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G~--~~~i~e~~~~~~--~~l~gs~pa~~~~~~~al~~~ 186 (273)
T PRK07680 119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIST--PLVIEEDITRVS--SDIVSCGPAFFSYLLQRFIDA 186 (273)
T ss_pred h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCCC--EEEEChHhcchh--hhhccchHHHHHHHHHHHHHH
Confidence 1 11111111 12333322 245677899999999863 44442 111111 111111001112222223333
Q ss_pred HHH-hCCCHHHHHHHhc
Q 011641 237 CEA-TGANVSQVAFAVG 252 (480)
Q Consensus 237 ~~~-~Gid~~~v~~~~~ 252 (480)
+.+ .|++.++..+++.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (273)
T PRK07680 187 AVEETNISKEEATTLAS 203 (273)
T ss_pred HHHhcCCCHHHHHHHHH
Confidence 334 8999887776654
No 81
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=1.4e-10 Score=116.21 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHH-------HHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEecC--H
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSR-------INAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD--V 72 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d--~ 72 (480)
||..+|..++.+ |++|++||++++. ++...+. ...+.+...+. ..++++++++ +
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence 799999999998 9999999999853 2211110 00010111111 1246888765 6
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCce
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
.+++++||+||.|||.. .+++ ..++.++.+.+++++++. ||.++-....+...+..... |.+|
T Consensus 74 ~~a~~~aD~ViEav~E~-----------~~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf 138 (314)
T PRK08269 74 ADALADADLVFEAVPEV-----------LDAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHW 138 (314)
T ss_pred HHHhccCCEEEECCcCC-----------HHHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEec
Confidence 67889999999999864 2333 567888999999998873 44444444555544432111 1121
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++|-+..+- ..| +++.. +++++++.+.++++.+++ .++++.+... +....+..+++
T Consensus 139 ---~~Pp~~~~l---------vEV-v~g~~--t~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~~~l 194 (314)
T PRK08269 139 ---LNPAYLMPL---------VEV-SPSDA--TDPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQALAM 194 (314)
T ss_pred ---CCccccCce---------EEE-eCCCC--CCHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHHHHH
Confidence 233322220 123 45543 368999999999999874 5666655432 23457889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+|...++++.++|++++.+++...
T Consensus 195 ~EAl~l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 195 NEAARMVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999999999999999999755
No 82
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.30 E-value=1.7e-10 Score=129.11 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..|.++ | ++|++||+++++++.+.+.+.. ...+++..+++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999987 6 5899999999987776542110 11245667778899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||. ..+.++++.+.+.++++++|++.+++...+.+.+.+.+.... . -++..+|...
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~-r~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--A-GFVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--C-eEEecCCcCc
Confidence 999999984 246788889999888889998888888777777766654321 1 1355677543
Q ss_pred ccc----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 160 AEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 160 ~~G----~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.++ .+...++....+++- .....+++..+.++++++.++ ..+...+.+
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~ 178 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILT-PLAETDPAALARVDRLWRAVG--ADVLHMDVA 178 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEE-CCCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 332 122334333334332 222335678889999999986 355555543
No 83
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.29 E-value=3.4e-10 Score=113.06 Aligned_cols=209 Identities=22% Similarity=0.222 Sum_probs=142.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|+|.||+-+|..|+++ |++|+++-|++. ++++++....+.+..-... -....+.+ .+....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~------~~~~~~~~-~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGGNFT------TPVVAATD-AEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCCccc------cccccccC-hhhcCCCCE
Confidence 8999999999999999999998 889999988766 8999986655543222000 01122233 334679999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce-EEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-QILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~v~~~Pe~~~ 160 (480)
||++|++.. +.++++.+.+.+++++.|+. -....|..+.+.+...+... -+ .+..+-.+-.
T Consensus 71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~i--l~G~~~~~a~~~~ 132 (307)
T COG1893 71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETV--LGGVTTHGAVREG 132 (307)
T ss_pred EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceE--EEEEeeeeeEecC
Confidence 999998642 47889999999999887653 34566777777666655411 01 1223334445
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
+|...+.-. ..+.+|..... .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 133 ~g~v~~~g~--g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~ 208 (307)
T COG1893 133 PGHVVHTGL--GDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLEN 208 (307)
T ss_pred CceEEEecC--CcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcC
Confidence 666544331 24556755321 23567788888876542 33455789999999999886
Q ss_pred --HHHHHHHHHHHHHHHHHHhCC
Q 011641 222 --FLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+.+..+.+.|...++.+.|+
T Consensus 209 ~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 209 PEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHhccC
Confidence 566777889999999999993
No 84
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.28 E-value=8.3e-10 Score=112.38 Aligned_cols=231 Identities=11% Similarity=0.113 Sum_probs=136.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+ |.||..+|..|.+. .+++|+++|++.+ .++++++++++||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 68999999 99999999999975 2899999998410 1235566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh---CCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV---SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|. +.+.++++++.+. ++++++|++-+++.....+.+ ++ .. .. ++..+|-
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~-~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LA-SQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---Hh-cC--CC-EEeeCCC
Confidence 99999884 3457778888875 789999998766654333332 22 21 23 5778887
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+..+.. +++....+++- +.. ..+..+.++++++.++ ..+..++++. -+++-+++-.-+...+++.+ +
T Consensus 112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~----~ 179 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQAMVHATHLAQAG----V 179 (370)
T ss_pred CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 765533 23444445443 221 3455778899999875 4666777653 23333332222222233221 1
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
+.....+..+. ..+.+|.+.-|.-|+..+.+.|.+. ..+|..+...|. .-....+.+.+
T Consensus 180 ~~~~~~~~~~~---------------~~~~~f~~~gFr~d~t~iTRIAss~-----P~mW~dI~~~N~-~i~~~l~~~~~ 238 (370)
T PRK08818 180 LRDYAPLLGEL---------------RALMPYRSASFELDTAVIARILSLN-----PSIYEDIQFGNP-YVGEMLDRLLA 238 (370)
T ss_pred HHhcccchhhh---------------hhhccccchhhHHHhhhcchhhcCC-----HHHHHHHHHhCH-HHHHHHHHHHH
Confidence 11111000010 1112344444444665556666543 578998888887 34444444444
Q ss_pred Hh
Q 011641 317 SM 318 (480)
Q Consensus 317 ~l 318 (480)
.+
T Consensus 239 ~L 240 (370)
T PRK08818 239 QL 240 (370)
T ss_pred HH
Confidence 43
No 85
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.28 E-value=8.5e-11 Score=117.67 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=134.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|+|+|.||+.+|..|++. |++|++++++.++++++++ ++..+...+-.... .... .+.+ ....+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~-~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETAD-AAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCcc-cccccC
Confidence 8999999999999999999998 9999999999889999975 33333221110000 0111 1112 246789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEe-eCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe~~ 159 (480)
+||+||++. | +.++++.+.+.+.++++|+. -....+..+.+.+.+.+... -..+. .+..+.
T Consensus 73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 2 46788999999998886653 34556666667666543210 01122 233445
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH---------------H-
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF---------------L- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~---------------~- 223 (480)
.||...+.... .+.+|... .+..+.+.++|...+- ......|+...-|.|++-|+- +
T Consensus 135 ~pg~v~~~~~g--~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGHG--FTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEeceE--EEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 67766543322 24467542 2345667777876431 233456899999999998861 1
Q ss_pred --HHHHHHHHHHHHHHHHhCCC
Q 011641 224 --AQRISSVNAMSALCEATGAN 243 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~Gid 243 (480)
....+++.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 23457789999999999875
No 86
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.4e-10 Score=113.11 Aligned_cols=207 Identities=13% Similarity=0.165 Sum_probs=149.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh---hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
+.|+.|||+.||..++.+.+++ |+.|.+|+|+.++++.+...... ...+.-..++++- ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 5699999999999999999999 99999999999999876542111 0011122333432 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
...|++-|... +.+...++++.++|.++.+||+-... .+.|.++..+. .+.+ . .+|..+-.
T Consensus 71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~G--i-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKKG--I-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-HhcC--c-EEEecCcc
Confidence 77888888753 23567789999999999999986543 55666666544 3332 1 34444433
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC----C--CeEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP----E--DRILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~----~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
-..+|. +..|.+|.||. +++...++.+|+.+.. + ...++++-+++..+|+++|-.-.--++++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 333432 45566888986 8899999999987531 1 234667888999999999999988999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc
Q 011641 232 AMSALCEA-TGANVSQVAFAVG 252 (480)
Q Consensus 232 E~~~l~~~-~Gid~~~v~~~~~ 252 (480)
|...+... +|.+-.++.+++.
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888777777664
No 87
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.22 E-value=7.1e-10 Score=109.50 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=116.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.++|..|.++ | ++|++|++++ ++.+.+.+.. +....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~~-----------------~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDKY-----------------PTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHHc-----------------CCeEEeCCHHHH
Confidence 79999999999999999999987 6 7899999864 4455443310 123456777777
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHHHHHhcCCCCceEEee
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (480)
++++|+||+|||. ..+.++++++.+.++++++|+. . ..|. .+.+++.+... .+
T Consensus 62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS--~-~aGi~~~~l~~~~~~~----~v---- 115 (277)
T PRK06928 62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVS--I-AAGVSLDDLLEITPGL----QV---- 115 (277)
T ss_pred HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEE--E-CCCCCHHHHHHHcCCC----CE----
Confidence 8999999999983 2357788889888887776653 2 2233 34565554321 11
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.|..|..+..-.... ..+..+ +..+++..+.++.+|+.++. .+.... ..-...--+.-+.-+....++..+.
T Consensus 116 --vR~MPN~~~~~g~g~-t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~tal~gsgPA~~~~~~~al~ 187 (277)
T PRK06928 116 --SRLIPSLTSAVGVGT-SLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE-ENMDIASNLTSSSPGFIAAIFEEFA 187 (277)
T ss_pred --EEEeCccHHHHhhhc-EEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch-hhCceeeeeecCHHHHHHHHHHHHH
Confidence 122332211111111 122222 22356778899999999863 443321 1000111111122233344555566
Q ss_pred HHHHHh-CCCHHHHHHHhc
Q 011641 235 ALCEAT-GANVSQVAFAVG 252 (480)
Q Consensus 235 ~l~~~~-Gid~~~v~~~~~ 252 (480)
.-+.+. |++.++..+++.
T Consensus 188 ~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 188 EAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 666676 688776666554
No 88
>PLN02712 arogenate dehydrogenase
Probab=99.22 E-value=4.1e-09 Score=115.54 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=104.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+- ++...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~-------------------Gv~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL-------------------GVSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc-------------------CCeEeCCHHHHHhcCCC
Confidence 7999999999999999999987 8999999998643 222211 1345567777565 589
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||.. .+..+++++.. .++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 24566777765 5788999998887763333444444332 222 455777655
Q ss_pred cccc-----cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+.. ....++.+ ++++++.. ..+..+.+.+++..++ .++..++++.
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~ee 539 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAE 539 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 4321 12223333 23454321 3445666778998885 4666666654
No 89
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-09 Score=105.93 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=124.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|+||.+|+..|.+++ +..+|++.++++++.+.+.+.. + +..+++..+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g-~~~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------G-VVTTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------C-CcccCcHHHHHhh
Confidence 789999999999999999999982 1269999999999987655420 1 1126777788899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+||+ |. .++++++++.+ ..++++|| |-...=+++.+...+.. . .+ .|
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~-~-----~v----vR 114 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGG-L-----RV----VR 114 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCC-C-----ce----EE
Confidence 999999998 43 25778888888 66788776 33333344556666651 1 11 12
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..|.....-...- ..+..+. ..+++..+.+.++|+.+++ .+.+.. ..-...--+.-.-=+....++..+..-+.
T Consensus 115 ~MPNt~a~vg~g~-t~i~~~~--~~~~~~~~~v~~l~~~~G~--v~~v~E-~~~da~TaisGSgPAyv~~~iEal~~agv 188 (266)
T COG0345 115 VMPNTPALVGAGV-TAISANA--NVSEEDKAFVEALLSAVGK--VVEVEE-SLMDAVTALSGSGPAYVFLFIEALADAGV 188 (266)
T ss_pred eCCChHHHHcCcc-eeeecCc--cCCHHHHHHHHHHHHhcCC--eEEech-HHhhHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2222111000001 1222222 2356778899999999863 444421 00001111111112334556777888888
Q ss_pred HhCCCHHHHHHHhcC
Q 011641 239 ATGANVSQVAFAVGT 253 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~ 253 (480)
+.|++.++..+++..
T Consensus 189 ~~Gl~~~~A~~l~~~ 203 (266)
T COG0345 189 RLGLPREEARELAAQ 203 (266)
T ss_pred HcCCCHHHHHHHHHH
Confidence 999998888777653
No 90
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.19 E-value=2.6e-09 Score=103.44 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=118.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCe-EEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIE-VAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~-V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|++++ ...+ ++++++ ++++.+.+.+. .++..+++.++++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHVTS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHHhc
Confidence 57999999999999999998861 1123 778887 57777766542 123456788888899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|+|.. .+.++++++.+.++ +++||..+ .+. .+.+++.+... .. .+...|.
T Consensus 67 ~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~~---~~-v~r~~Pn 123 (245)
T PRK07634 67 VDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPKG---TP-VAWIMPN 123 (245)
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCCC---Ce-EEEECCc
Confidence 99999998842 34677788887776 55665332 222 23354444321 11 2335664
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH---HHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---FLAQRISSVNAMS 234 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---~~~~~ia~~nE~~ 234 (480)
....- ....+.+..+. ..+++..+.++++|+.++. .+... . +....+.-+ --+....++..+.
T Consensus 124 ~a~~v-----~~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e-~~~~~~~a~~gs~pa~~~~~~~a~~ 189 (245)
T PRK07634 124 TAAEI-----GKSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---E-EEVHQLTAVTGSAPAFLYYFAESLI 189 (245)
T ss_pred HHHHH-----hcCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---H-HHcchHHhhhcchHHHHHHHHHHHH
Confidence 43210 01112222222 1257888999999999863 44332 1 112211111 1123345566677
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 011641 235 ALCEATGANVSQVAFAVG 252 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~ 252 (480)
..+.+.|++.++-.+++.
T Consensus 190 ~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 190 EATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 778889999888777775
No 91
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.13 E-value=2.6e-10 Score=93.89 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=68.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC---CeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+|||+|.||.+++..|.++ | ++|+.+ ++++++.+.+.+.. ...++. +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999998 8 999955 99999999887531 234444 7788899
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
++|+||+|||. . .+.++++++ +...+++++|.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 246778888 66667888874
No 92
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.13 E-value=9.5e-09 Score=100.40 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=111.9
Q ss_pred HHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCC
Q 011641 16 TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGL 95 (480)
Q Consensus 16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~ 95 (480)
+|..|.++++.++|+++|++++.++...+.+. .-...++ .++++++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence 57788888444899999999998877643211 0123344 4568999999999873
Q ss_pred CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccccccccccCCCCeEE
Q 011641 96 GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175 (480)
Q Consensus 96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vv 175 (480)
+.+..+++++.+.++++++|++.+++.....+.+.+.+.........+=.++||..++..+..+++....++
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~i 127 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWI 127 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEE
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEE
Confidence 356889999999999999999988887666666665555211111123345667777766777777776666
Q ss_pred EecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 176 IGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 176 iG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
+- +...++++..+.+.++++.++ ..+..++++ .-+++-++.-.-..+..++++.+.
T Consensus 128 l~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~ 184 (258)
T PF02153_consen 128 LC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTLA 184 (258)
T ss_dssp EE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred Ee-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 333345678999999999885 456666654 334445555544555555555333
No 93
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.13 E-value=5e-09 Score=99.88 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=70.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCC-CcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..+++.+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999998 89999999999998887642110 000000 0012333 446678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||+|||.. .+.++++++.+.++ +++||..+
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence 9999999843 35677778877666 47666543
No 94
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.12 E-value=3.5e-09 Score=103.61 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=116.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+++..|.+++ ...+++++|+++++. ....+.+..+++++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 58 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC 58 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence 89999999999999999999861 013599999876531 122345666777899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|. ..+.++++++.++++++.+|.+.+++...+ ++..+.... . .+ |.
T Consensus 59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~---~-vv-----r~ 111 (260)
T PTZ00431 59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEA---K-IV-----RV 111 (260)
T ss_pred CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCC---e-EE-----EE
Confidence 999999883 246788889988887666666655555433 333332211 1 11 23
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|+.... +.+- ..++... ...+++..+.++.+|+.++. .+.... +.-...--+.-+--+....++..+...+.+
T Consensus 112 mPn~p~~-~g~g-~t~i~~~-~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~ta~~gsgPA~~~~~~~al~~~~v~ 185 (260)
T PTZ00431 112 MPNTPSL-VGQG-SLVFCAN-NNVDSTDKKKVIDIFSACGI--IQEIKE-KDMDIATAISGCGPAYVFLFIESLIDAGVK 185 (260)
T ss_pred CCCchhH-hcce-eEEEEeC-CCCCHHHHHHHHHHHHhCCc--EEEECh-HHcchhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3333311 1111 1233322 22356678899999999863 444421 110111111111123445566677778888
Q ss_pred hCCCHHHHHHHhcC
Q 011641 240 TGANVSQVAFAVGT 253 (480)
Q Consensus 240 ~Gid~~~v~~~~~~ 253 (480)
.|++.++..+.+..
T Consensus 186 ~Gl~~~~a~~l~~~ 199 (260)
T PTZ00431 186 NGLNRDVSKNLVLQ 199 (260)
T ss_pred cCCCHHHHHHHHHH
Confidence 99998887777653
No 95
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.11 E-value=2.9e-10 Score=104.69 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=142.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-----------CCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-----------QLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-----------~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|.+|+|||.|.||..+|+.-+.. |++|+++|.|++.+++..++ +..-.....++++... -.+++.+
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~-l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT-LDRIKTS 87 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH-HHHHHHc
Confidence 35799999999999999999998 99999999999876654321 1111122244444321 1357788
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE-ecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~-- 146 (480)
++..+++.++|+||.++-. +.|++ +..+++|...+++.+++.. .|++. ...+...++....
T Consensus 88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~srf~ 151 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLS---LTDIASATQRPSRFA 151 (298)
T ss_pred CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeeccccee---HHHHHhhccChhhhc
Confidence 9999999999999998764 34555 6788999999998887752 23222 1223333333222
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|.-... ...||- +++ ++++++..+..+-..+++ .++...| ...++.| .+.
T Consensus 152 GlHF---fNPvPvMK---------LvEVir-~~~--TS~eTf~~l~~f~k~~gK-ttVackD-----tpGFIVN---RlL 207 (298)
T KOG2304|consen 152 GLHF---FNPVPVMK---------LVEVIR-TDD--TSDETFNALVDFGKAVGK-TTVACKD-----TPGFIVN---RLL 207 (298)
T ss_pred eeec---cCCchhHH---------Hhhhhc-CCC--CCHHHHHHHHHHHHHhCC-CceeecC-----CCchhhh---HHH
Confidence 4444 45543221 112433 333 378999999888888864 4454433 2345677 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
+-+++|..++.++..+..+++..++..+.
T Consensus 208 iPyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 208 IPYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 99999999999999999999999998664
No 96
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.07 E-value=4e-09 Score=104.72 Aligned_cols=202 Identities=18% Similarity=0.149 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCC
Q 011641 11 YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT 90 (480)
Q Consensus 11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.||+.+|..|+++ |++|++++|+ ++.+.+++++..+..++.+. . . ....+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~--~--~-~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGEF--Q--F-RPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCcE--E--E-cccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999998 9999999997 77888887555443322110 0 0 02345566666 67899999999864
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEee-CCccccccccccccC
Q 011641 91 KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS-NPEFLAEGTAIQDLF 169 (480)
Q Consensus 91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~ 169 (480)
++.++++.+.+.+.++++|+. .....|..+.+.+.+.+... -..+.+ +-.+..||...+..
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~v--~~g~~~~~~~~~~pg~v~~~~- 132 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARRI--LGGVVTHGAVREEPGVVHHAG- 132 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccCE--EEEEEEEeeEEcCCcEEEEec-
Confidence 247788999999988887764 44556666667666543210 111222 22344566544332
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH---------------------HHHHHHH
Q 011641 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------------FLAQRIS 228 (480)
Q Consensus 170 ~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (480)
..++.+|..+.. .+..+.+.++|...+. ......|+....|.|++.|+ .+.+..+
T Consensus 133 -~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 133 -LGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred -cccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 335677875421 2445667777776432 23456799999999999885 3456667
Q ss_pred HHHHHHHHHHHhCCCH
Q 011641 229 SVNAMSALCEATGANV 244 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~ 244 (480)
.++|+..++++.|+++
T Consensus 209 ~~~E~~~v~~a~G~~~ 224 (293)
T TIGR00745 209 LMDEVVRVARAEGVDL 224 (293)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 8999999999999763
No 97
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.01 E-value=2.2e-09 Score=107.27 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=84.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||..+|..++.+ |+ +|+++|++++..+... .++++++.... ...++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~~----~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVGG----FDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---HhhhhhhhccC----CCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999997 65 8999999766433211 11222222111 1246888899887 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++|...++ ++ ..|++.++++.++|.++.+...+|+ -|.|....-.
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~ 126 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY 126 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence 99999999976522 10 1577888999999999875443333 3567666443
No 98
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.99 E-value=1.6e-08 Score=93.69 Aligned_cols=167 Identities=20% Similarity=0.183 Sum_probs=101.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC-HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|+|+|.|.+|.++|.+|++. ||+|+.-.++ ++..+...+... ..++. .+.+++++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence 89999999999999999999998 9999988554 455555444211 12333 3456778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc---c------------h-HHHHHHHHHh
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV---K------------T-AEAIEKILTH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---g------------t-~~~l~~~l~~ 143 (480)
|+||++||.+ ++..+++++...+. ++|||+ .|+|. + + ++.+++.+..
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999853 45677788887776 787776 56661 1 1 2223333332
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA 212 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~a 212 (480)
...-.-|.-+ ....+..+.. .+ ... .+.+.++ +.++.+.+.++-+.++ ..++-.++++.+
T Consensus 125 akVVkAFn~i-~a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~~a 184 (211)
T COG2085 125 AKVVKAFNTI-PAAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLENA 184 (211)
T ss_pred cchhhhhccc-CHHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccccc
Confidence 2100112211 1122222111 11 112 2445566 5789999999999885 455666655443
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.95 E-value=1.4e-09 Score=94.03 Aligned_cols=93 Identities=28% Similarity=0.264 Sum_probs=64.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|..|+..|.++ ||+|.++ .++++..+.+.... +.. ...++.+.++.+|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence 7999999999999999999998 9999875 67777776666421 111 2234567789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh--CCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV--SKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~STv 129 (480)
++|||||.. .+.+++++|... .+++++|+.+|.-
T Consensus 71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 999998842 578899999987 7889999988743
No 100
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.92 E-value=8.2e-08 Score=96.13 Aligned_cols=151 Identities=11% Similarity=0.035 Sum_probs=94.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|++++++.++....... .++.. .+.+++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence 6899999999999999999998 99999988875443322210 12333 377888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||.. ....++ +++.+.++++++|+..+.+..... .....+ +.++ +...|..
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~---~~~p~~---~~~V-i~vaPn~-- 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFG---QIVPPA---DVDV-IMVAPKG-- 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhc---eeccCC---CCcE-EEeCCCC--
Confidence 99999842 125566 778899999998877655443321 111111 2333 2344642
Q ss_pred cccccccc----CCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 011641 161 EGTAIQDL----FNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~~~~----~~~~~vv-iG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
||..+... ...+-++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 33322221 1112233 2221 246788899999999874
No 101
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.92 E-value=2.4e-08 Score=92.30 Aligned_cols=208 Identities=16% Similarity=0.152 Sum_probs=134.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc----CCCCCcCCC-------hHHHHhhhcCCCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS----DQLPIYEPG-------LDGVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~~~~e~~-------l~~~~~~~~~~~l~~t~ 70 (480)
-||+|+|.|.+|..+|..||.. ||+|..||+.++.++...+ ....+.+.| .++-+ ..+..|+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eql-----a~is~t~ 76 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQL-----ALISGTT 76 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHH-----HHHhCCc
Confidence 4899999999999999999998 9999999999876543211 100001111 11111 1234578
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE-ecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
++.|+.+++=.|-.|+|.. +..-+...+++...+.+.+|+.. .||+.|... ..-|... .
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~-------------L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~---s~gL~~k----~ 136 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPED-------------LNLKKQLYKQLDEIADPTTILASSTSTFMPSKF---SAGLINK----E 136 (313)
T ss_pred cHHHHHhhhhhHHhhchHh-------------hHHHHHHHHHHHHhcCCceEEeccccccChHHH---hhhhhhh----h
Confidence 9999999999999999853 22336777888888877666532 245555432 1111111 1
Q ss_pred eEEeeCCccccccccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
-.++.+|.. |-- +-| ..+|-. +-+++++.++.+.+++.++. .++... -|...++-| .+..|
T Consensus 137 q~lvaHPvN--PPy-----fiPLvElVPa---PwTsp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~ln---riq~A 198 (313)
T KOG2305|consen 137 QCLVAHPVN--PPY-----FIPLVELVPA---PWTSPDTVDRTRALMRSIGQ-EPVTLK----REILGFALN---RIQYA 198 (313)
T ss_pred heeEecCCC--CCc-----ccchheeccC---CCCChhHHHHHHHHHHHhCC-CCcccc----cccccceec---cccHH
Confidence 245566642 111 111 123222 22368899999999999873 344332 345555556 67889
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 229 SVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+||-.+++...++++.++...++.+
T Consensus 199 ilne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 199 ILNETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHHHccCcchhhHHHHHhcC
Confidence 99999999999999999999888765
No 102
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.86 E-value=7.5e-08 Score=94.30 Aligned_cols=190 Identities=17% Similarity=0.242 Sum_probs=123.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-----eEEEEECCH------HH-HHHHHcC-CCCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV------SR-INAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~------~~-v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||.|+||+++|+.+..+..++ +|..|-..+ ++ .+-+|+. ++.-|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 47999999999999999998753223 455554322 22 3334443 3444555542 2357899
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC----Ccc-hHHHHHHHHHh
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV----PVK-TAEAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv----~~g-t~~~l~~~l~~ 143 (480)
++|+.+++.+||+++..+|. .++..++++|..+++++...|..+.. .+| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPh---------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPH---------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCCh---------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 99999999999999999984 24678999999999998877655432 233 24456777766
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA 221 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
.. |....++.+|....+-. .+.+- .-.+|+.+. .+.-..++++|++-. ..+....|..+.|++.-+.|.
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa--~~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~-FrV~~~~D~~~VEi~GaLKNV 229 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVA--NEKFC--ETTIGYKDK---KEAGILLKKLFRTPY-FRVVVVEDADGVEICGALKNV 229 (372)
T ss_pred Hh-CCCceeecCCchHHHHH--hcccc--ceeEeccch---hhcchHHHHHhCCCc-eEEEEeccchHhHHhhhHHhH
Confidence 54 34556788887655422 12222 234687632 333345888888743 223445688888888877775
No 103
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.81 E-value=1e-07 Score=96.24 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=76.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++++.... .++.++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999998754211 11234578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... +...+ ..+.+.+.++++.++|+.|-...=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998542 22222 346677888999999986654333345566777653
No 104
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.80 E-value=3.4e-08 Score=99.05 Aligned_cols=122 Identities=24% Similarity=0.275 Sum_probs=79.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..++.. |+ +|+++|+++++.+..... +.+... ......+++.++|++ ++++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~~----~~~~~~~i~~~~d~~-~~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAAP----VEGFDTKITGTNDYE-DIAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhhh----hcCCCcEEEeCCCHH-HHCCC
Confidence 79999999999999999999987 54 999999998875443211 000000 001124567778875 48999
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 80 DIVFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+||+++.+|...+.. ...-.-++..++++++.|.+..++..+|+. |.|....
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~ 125 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM 125 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 9999999887644110 000012456678888888888765544443 5565543
No 105
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.77 E-value=7.8e-07 Score=83.79 Aligned_cols=248 Identities=15% Similarity=0.083 Sum_probs=146.6
Q ss_pred CcEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh
Q 011641 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60 (480)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~ 60 (480)
||||+|.|.|+ -|..||..||+. ||+|++.|.|.+..+ +++.+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~d--------------d~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMD--------------DEHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccC--------------HHHHHH
Confidence 79999999995 478899999998 999999998754321 111222
Q ss_pred hcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHH
Q 011641 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEK 139 (480)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~ 139 (480)
+.+.+++.++|-.++++++++.++.+| +.. .-..+++.|.++++.+.+|.+..|++|=. ...+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTP--FGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTP--FGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecc--cch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 223457888887788999999999954 431 23567899999999999998888886644 334555
Q ss_pred HHHhcCCCCceEEe-eCCccccccccccccCCCCeEEEecCCC----cchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011641 140 ILTHNSKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (480)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.|+-.. .++.+. ++|- ..||...++. +++|+..+ ..+++..+++.++.++.++ . .++.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~~-----yviagr~t~g~elATeEQi~r~velaes~Gk-~-~yv~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHGH-----YVIAGRSTEGKELATEEQIERCVELAESTGK-E-VYVLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCce-----EEEeccCCCceeeccHHHHHHHHHHHHhcCC-c-eEecCHHHHHH
Confidence 554321 233332 3443 4566654443 45665432 2357788899999999873 3 34433322222
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhcCC-CCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 215 SKLAANAFLAQRISSVNAMSALCEA-TGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~Gid~~~v~~~~~~~-~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+.=+.-...+..++.+-+......+ .|+..+.+-+-+-.. ..+ .++--..|++|-.=.-|+..|...++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 2222233344555555555555543 455544332222111 000 1121222445544445788888887776554
No 106
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.73 E-value=4.3e-08 Score=98.22 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=83.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+ |++|..+|..|+.. |+ +|+++|+++ +.+.++....++.+ .+.......++++++|.++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence 89999997 99999999999987 55 599999954 34444444333321 1111000124666677665 999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+|+.+|...+. .+.|+ +.++++.+.|.+..+...+|+..++++..|
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 9999999998875421 13455 778888899998887666777766777665
No 107
>PRK07574 formate dehydrogenase; Provisional
Probab=98.66 E-value=3.6e-07 Score=93.79 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=79.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|... |.+|++||++....+.... .+++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 6899999999999999999986 9999999997532221111 123444678898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-. +++..+. -++....++++.++|+.+....-..+.|.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99998842 2233332 24566778999999998877666667787777764
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=98.65 E-value=4e-07 Score=93.39 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=79.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..|..- |.+|++||++....+.... .++....+++++++.||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5899999999999999999976 9999999987432221111 123445678898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|... ++..+. -+++...++++.++|+.+....-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999988532 223332 24577788999999998776655566677777764
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.64 E-value=4.5e-07 Score=91.80 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=78.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .++++.++.||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 5899999999999999999987 9999999997543211 11 01222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+. -++....++++.++|+.|+...-..+.+.+.|++.
T Consensus 208 V~l~lP~t~~-----------T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTKE-----------TYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCChH-----------Hhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 9999985321 12221 23566778999999999988777777788888764
No 110
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.64 E-value=1.6e-07 Score=94.99 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=78.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|++. .|.+|++||+++... ... .++.++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-~g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKG-YGSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 6899999999999999999542 288999999876432 110 12345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+.. +...+.++++.++|+.|+...-.++.+...|.+.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 21211 3456778999999999998777777777777653
No 111
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.59 E-value=5.4e-06 Score=83.08 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=90.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. +++.+ +..++++.||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 34444444321 23333 4677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+|++|||.. .....+.+++.+.++++.+|.+...+.. ..+...+.+ +.++ +--.|.-
T Consensus 62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~~~---~~~V-vrvmPn~-- 118 (314)
T TIGR00465 62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVPPK---DVDV-VMVAPKG-- 118 (314)
T ss_pred EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccCCC---CCcE-EEECCCC--
Confidence 999999831 1234556778888888887765444332 222222222 1222 2345532
Q ss_pred ccccc-cc---cCCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 011641 161 EGTAI-QD---LFNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~-~~---~~~~~~vv-iG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
|+..+ .. -...+.++ ++.+ .+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~~~---~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVEQD---PTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 23211 00 01112232 2221 246778899999999874
No 112
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.56 E-value=2.2e-07 Score=83.21 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=74.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|++.+ +++|+++|+++++.+.+.+.... .......++..+.++++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 58999999999999999999872 37899999999988776532000 0000123455666789999
Q ss_pred EEEeccCCCC-CCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||.|+|.+.. .+ +.. .. ...++++++|++.|++++.+ .+.+.+++.
T Consensus 85 vi~~~~~~~~~~~--------~~~---~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD--------ELP---LP----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC--------CCC---CC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987643 10 000 00 12257899999999987665 555555543
No 113
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.56 E-value=3.6e-07 Score=90.42 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|+++++.....+.... .++.. .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 5799999999999999999998 9999999875433322221 12333 378889999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
|++++|.+.+ ..++ +.+.+.++++++++..-.
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence 9999996421 2233 568899999998876443
No 114
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.55 E-value=1.2e-06 Score=87.84 Aligned_cols=110 Identities=22% Similarity=0.405 Sum_probs=73.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ | .+|.++|+++++.+. +... .++.++ ....+++++ +
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~-~ 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYA-D 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHH-H
Confidence 7999999999999999999998 6 689999999887654 3322 222111 122356665 4
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||+|++.|..... .+. +.+.+++..+.|.++.+.+.+++. |.|...
T Consensus 65 l~~aDiViita~~~~~~~~----~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~ 121 (308)
T cd05292 65 CKGADVVVITAGANQKPGE----TRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV 121 (308)
T ss_pred hCCCCEEEEccCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 8999999999998865411 122 344456666777776655444443 455544
No 115
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.55 E-value=1.1e-07 Score=84.90 Aligned_cols=114 Identities=23% Similarity=0.273 Sum_probs=77.4
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|+|+|.||+.+|..|++. |++|.++++++ +.+.+++....+....-++.+ .......+..+....+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence 79999999999999999997 99999999988 888888654433322211000 00122233323468899999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHH
Q 011641 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l 141 (480)
+||++. + ++++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 998853 2 46788889999998866543 345566666666555
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.53 E-value=7.9e-07 Score=87.24 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=54.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. +....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987511355 557999999888765421 134567888877899
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+|++|+|
T Consensus 63 DvVvi~a~ 70 (265)
T PRK13304 63 DLVVECAS 70 (265)
T ss_pred CEEEEcCC
Confidence 99999976
No 117
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.51 E-value=1.6e-06 Score=76.71 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=75.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|.++|..|..+..+.++.++|+++++.+..... ++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence 89999999 999999999999875557899999998876654421 1111111 1112334344455699999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+|+++...|..... ++ ..+...+++..+.|.++.+.+ +++. -|.|.....
T Consensus 72 ivvitag~~~~~g~---sR~~ll~~N~~i~~~~~~~i~~~~p~~-~viv-vtNPvd~~t 125 (141)
T PF00056_consen 72 IVVITAGVPRKPGM---SRLDLLEANAKIVKEIAKKIAKYAPDA-IVIV-VTNPVDVMT 125 (141)
T ss_dssp EEEETTSTSSSTTS---SHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHHHH
T ss_pred EEEEeccccccccc---cHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEE-eCCcHHHHH
Confidence 99999887754311 11 112344555666677776444 4433 266766433
No 118
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.51 E-value=8e-07 Score=88.62 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=76.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....+++++++.||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 5799999999999999977765 9999999986321 11 0 0112468888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -++....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 12221 24556678999999999988777778888888764
No 119
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.51 E-value=1.2e-06 Score=87.55 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|+||..+|..++.+ |. +|+++|+++++.+...- .+.+.... ....+++.++|.++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999987 65 99999999875433221 01111110 01235677778654 899999
Q ss_pred EEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+|+.+|...+.. +....-++..++++++.|.+..+++.+|+. |.|...
T Consensus 70 VIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di 120 (300)
T cd01339 70 VVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV 120 (300)
T ss_pred EEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 99999888654210 000012566677888888888865554443 355443
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.48 E-value=1.3e-06 Score=86.01 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||||||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 78999999999999999998632478876 7899999877765421 11234567788778899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEE
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+|++|+|+.. ..+..... ++.++-|+..|+......+++.+..++.+ ..+++
T Consensus 70 ~Vvi~tp~~~---------------h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 70 IVVEAAPASV---------------LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred EEEECCCcHH---------------HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 9999987532 12333332 34455455555433334455655555543 34444
No 121
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.48 E-value=5.6e-05 Score=70.58 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=111.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||. |.||..++..|.+. |+.|+ +.+||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999988 88874 13689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.+.++++. .+|++-+++... +. +... + ++..+|-+.
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~---~~~~---~-~vg~HPMfG- 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FK---KYSG---K-IVSIHPLFG- 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HH---HhcC---C-EEecCCCCC-
Confidence 999998832 2334444432 356665544321 22 1111 2 477888764
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|..+..+++. .+++-+. ..+++..+.++++++ + ..+..++++. ++-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~ee-----------HD~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADE-----------HDLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 5555555542 3333222 235677888899988 2 3566667654 233344444443332111
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHC-CCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
-.+. . ..+ .++|| +.++++|+.. +.+ ..+|......|.+- ..++++++.++
T Consensus 142 l~~~---------~----~~~--~t~~f---------r~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI---------K----SDI--KTGSF---------DKLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC---------C----CCC--CCccH---------HHHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 1110 0 012 12222 3455566553 333 68999999999886 66777777664
No 122
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.44 E-value=1.2e-05 Score=75.51 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999998 9999999999998887764
No 123
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.39 E-value=4.7e-06 Score=83.76 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++||||+|.+|..+|..+..- |.+|++||+ .+...+.. .......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~---------------------~~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGV---------------------DGVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhcc---------------------ccceecccHHHHHhhCC
Confidence 5799999999999999999987 999999999 33322111 01233467888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC---CCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|.+.+|-.. ++..+.. .+....++++.++|+.+=.+.=..+.|.+.|++... +.|+ |.+|
T Consensus 200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV---f~~E 263 (324)
T COG0111 200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV---FEEE 263 (324)
T ss_pred EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC---CCCC
Confidence 9999987432 2232322 234456889999998765444444567777766422 2332 5566
Q ss_pred cccccccccccCCCCeEE
Q 011641 158 FLAEGTAIQDLFNPDRVL 175 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv 175 (480)
-..+++ .++..++|+
T Consensus 264 Pl~~~~---pL~~~pnV~ 278 (324)
T COG0111 264 PLPADS---PLWDLPNVI 278 (324)
T ss_pred CCCCCC---hhhcCCCeE
Confidence 554443 334444554
No 124
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.38 E-value=3.9e-06 Score=71.66 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=55.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.+|......+.+..+++++. ++|+++++.+.+.+. -++...+|.++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888764567765 789999988876542 13457788888776 7
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 89999998764
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.37 E-value=6.8e-06 Score=88.32 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=77.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+....- .... ...... ++++.++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 5799999999999999999987 99999999853211 1111 113333 68888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+. -+.....++++.++|+.|..+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~t-----------~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPET-----------RGLI--GAEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChHh-----------hcCc--CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 99999854221 1121 14566778999999998877666667787777764
No 126
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.37 E-value=4.5e-06 Score=83.41 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=74.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|++|.++|..++.+ | .+++++|+++++++.+... +++........++..+++.+ .+++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999987 6 6899999999988777653 11111110112345556665 5999999
Q ss_pred EEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+|..+|..... + +. ....+++..+.|.++.+ +.+|++- |.|.....
T Consensus 70 VIitag~p~~~~~---~-R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~-sNP~d~~~ 122 (300)
T cd00300 70 VVITAGAPRKPGE---T-RLDLINRNAPILRSVITNLKKYGP-DAIILVV-SNPVDILT 122 (300)
T ss_pred EEEcCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEc-cChHHHHH
Confidence 9999998865421 1 12 22334556666666664 4444432 45655433
No 127
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.37 E-value=7.3e-06 Score=75.51 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=71.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||++......... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 5899999999999999999986 9999999998876542221 1233 3588888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..| +.....++++.++|+.+-...=..+.+.+.|++.
T Consensus 95 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccce-----eee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 9999984221111 222 3445678899999975533222234477777663
No 128
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.36 E-value=7.8e-06 Score=87.87 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=77.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+.... +.... ......+++++.++.||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 5799999999999999999876 9999999984211 11111 123444678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+.. +.....++++.++|+.|..+.=..+.|.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985321 112221 3445578999999998887666667787778764
No 129
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.33 E-value=2.5e-06 Score=73.54 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------CC-Cc--cCCCCccccchhHhHHH
Q 011641 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG-------PK-FL--NASVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~-------~~-~~--~pg~g~gG~cl~kD~~~ 279 (480)
+++..+|+++|.+...++..+.|...++++.|+|+++++++++..+.-+ ++ ++ .+.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 3678999999999999999999999999999999999999999765211 11 11 35577999999999999
Q ss_pred HHHHHHHCCCChhhHHHHHHH
Q 011641 280 LVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.+++.|+| .++.+.+.
T Consensus 81 ~~~~a~~~g~~--~p~~~~~~ 99 (122)
T PF14833_consen 81 ALDLAKEAGVP--LPLGSAAR 99 (122)
T ss_dssp HHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHH
Confidence 99999999998 56555543
No 130
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.32 E-value=1.1e-05 Score=80.88 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-EecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.+ | ++|+++|+++++.+.+... +.+.... ...... .+.+.+ .+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~-~l~~ 68 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYS-DCKD 68 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHH-HhCC
Confidence 5899999999999999999988 6 6899999999887766532 1111110 011122 235555 4899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+||+|++.|..... + +. +...+++..+.|.++.+ +.+|++- |.|..+.-
T Consensus 69 aDIVIitag~~~~~g~---~-R~dll~~N~~i~~~~~~~i~~~~~-~~~vivv-sNP~d~~~ 124 (306)
T cd05291 69 ADIVVITAGAPQKPGE---T-RLDLLEKNAKIMKSIVPKIKASGF-DGIFLVA-SNPVDVIT 124 (306)
T ss_pred CCEEEEccCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-cChHHHHH
Confidence 9999999988754311 1 11 22334555566666655 4444432 46665543
No 131
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=78.33 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=112.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~aD 80 (480)
.+|||||.|.||.-+|..|.++ ||.|++.||+. -+.+.+.. |. ...+++.+ .-+..|
T Consensus 53 l~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g~-~~ft~lhdlcerhpD 110 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------GS-AKFTLLHDLCERHPD 110 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------cc-cccccHHHHHhcCCC
Confidence 3699999999999999999999 99999999975 33333210 11 11233333 236899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce---EEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF---QILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~---~v~~~P 156 (480)
+|++|+.. ..++.+++...+. ++.+++++...++.-=..+.+.+.|.+.. |+ +-.++|
T Consensus 111 vvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdf---DIlctHpmfGP 172 (480)
T KOG2380|consen 111 VVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDF---DILCTHPMFGP 172 (480)
T ss_pred EEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcccc---ceEeecCCcCC
Confidence 99999652 2356666666665 78899998765553222233555665532 32 223455
Q ss_pred cccccccccccc-CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDL-FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~-~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
+...++- .++ +-..++-+|- ....++.+|.+.++|...+. ....++.+ |--|++..++.-++.++..--..
T Consensus 173 ksvnh~w--qglpfVydkvRig~--~~~r~ercE~fleIf~cegc--kmVemS~e--eHDkiaAdsQfVTHtagr~lg~a 244 (480)
T KOG2380|consen 173 KSVNHEW--QGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC--KMVEMSYE--EHDKIAADSQFVTHTAGRSLGSA 244 (480)
T ss_pred CcCCCcc--ccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC--eEEEEEee--cccccccchhHHHHHHHHHHHHh
Confidence 5333221 111 0111222342 12236789999999998753 33333332 45667766666666666543333
Q ss_pred HHHHhCC
Q 011641 236 LCEATGA 242 (480)
Q Consensus 236 l~~~~Gi 242 (480)
.++..-+
T Consensus 245 w~~syPi 251 (480)
T KOG2380|consen 245 WAKSYPI 251 (480)
T ss_pred hhhhCce
Confidence 3334333
No 132
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.31 E-value=2.7e-06 Score=85.33 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=73.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||++++... +.+ ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 5899999999999999999987 999999998653211 110 01112467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.. +++..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99999843 2223222 24566778999999986543322345576777654
No 133
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.30 E-value=6.7e-06 Score=82.45 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=73.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..|+..+...++.++|+++++.+..... +...........++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999998773345899999998765543321 000000000124666688886 899999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||++...|..... ++ .-+...+++..+.|.++.+ +.++++- |.|...
T Consensus 75 vvitaG~~~k~g~---~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~ 125 (312)
T cd05293 75 VIVTAGARQNEGE---SRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVV-SNPVDI 125 (312)
T ss_pred EEECCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEc-cChHHH
Confidence 9999887654311 11 1122335556667777754 4444432 456554
No 134
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.29 E-value=3.9e-06 Score=83.19 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=70.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..|... |.+|+++++++++.+.+.+.... .+. ..++.+.++++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~~----------------~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGLI----------------PFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCCe----------------eec-HHHHHHHhccCCE
Confidence 4799999999999999999987 89999999999876655431100 011 1345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|+|.+.- -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 9999875321 1234456788999999998886663
No 135
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.27 E-value=7.3e-06 Score=85.77 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cEEEEECCChhHHHHHH--HHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||+|.||.+++. .++. ..+|++|++||+++++++.+.... ...+... ...+++.++|+++++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~--------~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILA--------KKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--------HHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999999776 3431 123889999999999888765421 1111111 123578899999999
Q ss_pred ccCcEEEEeccCCC
Q 011641 77 SEADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||++++...
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998653
No 136
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.26 E-value=4.4e-05 Score=74.01 Aligned_cols=176 Identities=14% Similarity=0.134 Sum_probs=103.6
Q ss_pred CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHH
Q 011641 26 SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY 105 (480)
Q Consensus 26 G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~ 105 (480)
.++|++++|++++.+.+.+. -+.+.+++..++++++|+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 024556777777889999999998 52 3
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchH
Q 011641 106 WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ 185 (480)
Q Consensus 106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~ 185 (480)
+.++++++.+.+.++++|| |....=+.+.+.+.+.... . + .|..|..+..-.... ..+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~iv--S~~agi~~~~l~~~~~~~~---~--i----vR~mPn~~~~~~~g~-t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLI--SIAAGVTLEKLSQLLGGTR---R--V----VRVMPNTPAKVGAGV-TAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEE--EecCCCCHHHHHHHcCCCC---e--E----EEECCChHHHHhCCe-EEEecCC--CCCH
Confidence 6778888887776677666 3333333455655553211 1 1 233332221111111 2222222 2245
Q ss_pred HHHHHHHHHHhccCCCCeEEeC--CchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 186 KAVKALKDVYAHWVPEDRILTT--NLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 186 ~~~e~~~~l~~~~~~~~~v~~~--~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+..+.++.+|+.++. .+... ....+-.+-=... +....++..+...+.+.|++.++..+++..
T Consensus 122 ~~~~~v~~lf~~~G~--~~~v~E~~~~~~talsgsgP---A~~~~~~~al~~~~v~~Gl~~~~A~~lv~~ 186 (245)
T TIGR00112 122 EDRALVLALFKAVGE--VVELPEALMDAVTALSGSGP---AYVFLFIEALADAGVKQGLPRELALELAAQ 186 (245)
T ss_pred HHHHHHHHHHHhCCC--EEEECHHHcchHHhhccCcH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 677899999999863 44442 1111111111222 344556667777888899998888877763
No 137
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.22 E-value=8.5e-06 Score=82.09 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. |+ +|+++|+++++...-.-.... ..... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~~~--------~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDISH--------SNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHHHh--------hhhccCCCeEEEECCCHH-HhCCC
Confidence 6899999999999999999987 74 899999999864321100000 00000 012466678885 58999
Q ss_pred cEEEEeccCCCCCCCC----CC--CCCCChHHHHHHHHHHHhhCCCCcEE
Q 011641 80 DIVFVSVNTPTKTQGL----GA--GKAADLTYWESAARVIADVSKSDKIV 123 (480)
Q Consensus 80 DvVii~Vptp~~~~~~----~~--~~~~d~~~v~~~~~~i~~~l~~~~iV 123 (480)
|+||++...|.....+ .+ .-..+...+.+.++.|.+..++..++
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~i 125 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVI 125 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999998765432000 00 00113444566667777777544333
No 138
>PRK15076 alpha-galactosidase; Provisional
Probab=98.17 E-value=1.9e-05 Score=82.73 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=57.4
Q ss_pred CcEEEEECCChhHHHHHH--HHH--HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++.+....- +...+... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 789999999999977766 554 223467999999999887743220 11111111 12357889998888
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998765
No 139
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.16 E-value=1.4e-05 Score=71.21 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=60.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|..|.+.|.+|.+. |.+|++-.+..+ ..+..++. +++. .+.+|+++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~~-------------------Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKAD-------------------GFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHHT-------------------T-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHHC-------------------CCee-ccHHHHHhhCC
Confidence 5899999999999999999998 999998887655 34333331 2333 46788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++.+|.. ...++. ++|.++|+++++++...
T Consensus 63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 999998732 123454 88999999999887643
No 140
>PLN02928 oxidoreductase family protein
Probab=98.16 E-value=2.4e-05 Score=79.72 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=72.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||++.........+ +.......+... . .. ..+++++++.||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~~---~-~~-~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL---IPNGDVDDLVDE---K-GG-HEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc---cccccccccccc---c-Cc-ccCHHHHHhhCCE
Confidence 5899999999999999999876 99999999973321110000 000000010000 0 11 2478888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -+.....++++.++|+.+-.+.=..+.|.+.|++.
T Consensus 230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884321 11121 14455678899999986543322344566667653
No 141
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.14 E-value=2.2e-05 Score=76.92 Aligned_cols=122 Identities=21% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 4 ICCIGA-GYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|||+ |.||..+|..|+..+ ...+|+++|+++++++..... +++........++++++|+.+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence 689999 999999999999872 127999999998776654431 111111110235778888778899999
Q ss_pred EEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~--~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...|..... ++ ...-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus 73 iVv~t~~~~~~~g~-~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~ 127 (263)
T cd00650 73 VVIITAGVGRKPGM-GRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY 127 (263)
T ss_pred EEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence 99998765543210 00 001133446667777777774 5555443 577766444
No 142
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=7.3e-06 Score=80.89 Aligned_cols=73 Identities=27% Similarity=0.366 Sum_probs=57.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.| .||.|||.+|.++ |+.|++|++.. .++++.++.||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~t---------------------------------~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSRS---------------------------------TDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCCC---------------------------------CCHHHHHhcCC
Confidence 479999996 9999999999998 99999997631 24667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +.. ..+++|++||+.|+.
T Consensus 205 IVIsavg~~~~--------------v~~------~~ik~GaiVIDvgin 233 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDA------DWLKPGAVVIDVGIN 233 (301)
T ss_pred EEEEecCChhc--------------ccH------hhccCCcEEEEeccc
Confidence 99999987632 111 127889999987654
No 143
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.13 E-value=1.2e-05 Score=82.45 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+..... .+ ... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~~-------------------~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----EG-------------------DGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----cc-------------------Ccc-ccCHHHHHhhCCE
Confidence 5799999999999999999987 99999999753211 00 111 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... + ...+..+. -+.....+++++++|+.|..+.=..+.+.+.|++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999884211 0 01111221 13455678999999998877666666777777653
No 144
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.13 E-value=3.5e-05 Score=80.18 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=75.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999985321 00 123344578899999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|-.. ++..+. -+.....++++.++|+.|-.+.=..+.|.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999988421 222222 13455678899999987766555566677777653
No 145
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.13 E-value=1.7e-05 Score=79.95 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..+|..++.. | .++.++|+++++.+...-...... ... -...+++.++|++ ++++||
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl~~~~-----~~~--~~~~~i~~~~d~~-~l~~AD 75 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDLKHFS-----TLV--GSNINILGTNNYE-DIKDSD 75 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHHhhhc-----ccc--CCCeEEEeCCCHH-HhCCCC
Confidence 6999999999999999999987 6 689999999876543221000000 000 0012456667887 689999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||++...|..... .+. ....+++..+.+.++.++..+|+. |.|...
T Consensus 76 iVVitag~~~~~g~----~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di 127 (319)
T PTZ00117 76 VVVITAGVQRKEEM----TREDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC 127 (319)
T ss_pred EEEECCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence 99999865432200 011 123456677777777654434443 455544
No 146
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.12 E-value=5e-05 Score=76.24 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=69.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+..... + ..+.. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~-----------~------------~~~~~-~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK-----------N------------EEYER-VSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc-----------c------------cCcee-ecHHHHhhcCCE
Confidence 4799999999999999988765 89999999853210 0 01222 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|++++|-.... ..+. -+.....++++.++|+.|=.+.=..+.|.+.|++
T Consensus 200 v~lh~Plt~~T-----------~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEKT-----------KNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCchh-----------hccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 99998843211 1111 1334567889999998654333234557677765
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.11 E-value=2.7e-05 Score=77.56 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=69.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|++|||.|.+|..++..|... |.+|+++|+++++.+...+-.. ......++.+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 5899999999999999999988 8999999999887666543210 01111345566789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. ..+.....++++.+|++.++.+.|+
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987421 1234556678899999888777664
No 148
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.08 E-value=6.3e-05 Score=75.87 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=70.9
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++||||+|.+|..+|..+. .- |.+|.+||+....-.. .. .+.+. .++++.++.||
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f--gm~V~~~~~~~~~~~~-~~-------------------~~~~~-~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF--NMPILYNARRHHKEAE-ER-------------------FNARY-CDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC--CCEEEEECCCCchhhH-Hh-------------------cCcEe-cCHHHHHHhCC
Confidence 57999999999999999986 43 8899999986321100 00 01233 37888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++|-.. ++..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 203 vv~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 203 FVCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999988432 222222 13455678899999986543333345577777654
No 149
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.06 E-value=4.3e-05 Score=76.46 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=71.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC---CCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhcc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD---QLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
||+|||+|.+|.++|..|+.+.-.-++.++|+++++.+..... ..++. ...+.+. +.+++ .+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-----------~~~~~~i~~~~y~-~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-----------YSTNTKIRAGDYD-DCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-----------CCCCEEEEECCHH-HhCC
Confidence 7999999999999999998772224899999998765443321 01110 0012222 45665 4999
Q ss_pred CcEEEEeccCCCCCCCCCCCC-CC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGK-AA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~-~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||++...|..... ++ +. +.+.+++..+.+.++.+ +.+++. -|.|..+...+
T Consensus 69 aDivvitaG~~~kpg~---tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~iv-vsNPvDv~t~~ 128 (307)
T cd05290 69 ADIIVITAGPSIDPGN---TDDRLDLAQTNAKIIREIMGNITKVTK-EAVIIL-ITNPLDIAVYI 128 (307)
T ss_pred CCEEEECCCCCCCCCC---CchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ecCcHHHHHHH
Confidence 9999999887654311 11 12 23445555566666664 444333 46676664443
No 150
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.06 E-value=8.9e-05 Score=74.58 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+..- |.+|..||+.+. -+.-.. .+.++.. +++.++.||+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F--gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF--GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 5899999999999999999943 899999999764 111111 1234544 7888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+.+|-. ++..++.. +.....++++.++|+.+=.+.=..+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99998742 23333322 3455678899999986543333345577777664
No 151
>PLN02602 lactate dehydrogenase
Probab=98.05 E-value=5.2e-05 Score=77.10 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=73.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++......++.++|+++++.+..... +...........++.++++++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998763234899999998766544321 111100000113444467776 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||++...|..... + +.| ...+++..+.|.++.+++ ++++- |.|..+...
T Consensus 109 VVitAG~~~k~g~---t-R~dll~~N~~I~~~i~~~I~~~~p~~-ivivv-tNPvdv~t~ 162 (350)
T PLN02602 109 CIVTAGARQIPGE---S-RLNLLQRNVALFRKIIPELAKYSPDT-ILLIV-SNPVDVLTY 162 (350)
T ss_pred EEECCCCCCCcCC---C-HHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCchHHHHH
Confidence 9999877654310 1 222 233455666666665544 44332 466655433
No 152
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.00 E-value=8.6e-05 Score=74.65 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=69.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.. |. ++.++|+++++++...... ..... .. .+.+. +++++ .+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl--------~~~~~-~~-~~~~i~~~~~~-~~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDL--------SHAVP-FT-SPTKIYAGDYS-DCKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHH--------Hhhcc-cc-CCeEEEeCCHH-HhCC
Confidence 5899999999999999999987 55 8999999988765544311 00000 00 12222 35555 4999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+||++...|..... + +. +...+++..+.+.++.+. .++++- |.|..+.
T Consensus 74 adivIitag~~~k~g~---~-R~dll~~N~~i~~~i~~~i~~~~~~-~~vivv-sNP~d~~ 128 (315)
T PRK00066 74 ADLVVITAGAPQKPGE---T-RLDLVEKNLKIFKSIVGEVMASGFD-GIFLVA-SNPVDIL 128 (315)
T ss_pred CCEEEEecCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc-cCcHHHH
Confidence 9999999887654311 1 11 223345555566655554 444332 4565543
No 153
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.97 E-value=4e-05 Score=77.48 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=70.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..|....+..+|.+||+++++.+.+.+.. ++ ..-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~-~g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SD-YEVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-hCCcEEEeCCHHHHhccCCE
Confidence 479999999999998877765434679999999999988776421 00 00125667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. . ..+ ...+++|+.|...++..|+.
T Consensus 196 VitaT~s~~-P-------~~~-----------~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 196 LVTTTPSRK-P-------VVK-----------ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred EEEecCCCC-c-------Eec-----------HHHcCCCCEEEecCCCCccc
Confidence 999987531 1 011 23568898886555544544
No 154
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.95 E-value=8.4e-05 Score=73.79 Aligned_cols=121 Identities=24% Similarity=0.313 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..|+....+.++.++|+++++.+..... +.....-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D--------L~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD--------LSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc--------hhhcchhccCceEEecCCChhh-hcCCC
Confidence 79999999999999999998765566999999995544322211 10000000 0122333234554 99999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+|+++-.-|..+.. .+. +.+-+++..++|.+..+...++| -|.|..+.-.+
T Consensus 72 iVvitAG~prKpGm----tR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty~ 127 (313)
T COG0039 72 IVVITAGVPRKPGM----TRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTYI 127 (313)
T ss_pred EEEEeCCCCCCCCC----CHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHHH
Confidence 99999977764411 122 33445556666666666333333 47787765443
No 155
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.93 E-value=5e-05 Score=77.81 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=70.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+..- |.+|++||+.... .+ .... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 5899999999999999999987 9999999964210 00 0011 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... + ...+..+. -+.....+++++++|+.|=.+.=..+.+.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999873221 1 01111111 13455678899999986644433345566777653
No 156
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.91 E-value=8.9e-05 Score=75.75 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE--ecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
||||.|||+|.+|.+.|..|+++ | .+|++.||+.++++++.... ..+. - -.+.+ ...+.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~~v~-----~-------~~vD~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGGKVE-----A-------LQVDAADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccccce-----e-------EEecccChHHHHHHH
Confidence 79999999999999999999998 6 89999999999999886531 1110 0 00111 12345668
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHH----------------HHhhC-CCCcEEEEecCCCcchHHHHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARV----------------IADVS-KSDKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------------i~~~l-~~~~iVi~~STv~~gt~~~l~~ 139 (480)
++.|+||.|.|-+. +.+.++++++. +.+.. +.+..++....+.||.+.-+..
T Consensus 67 ~~~d~VIn~~p~~~-----------~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~ 135 (389)
T COG1748 67 KDFDLVINAAPPFV-----------DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAA 135 (389)
T ss_pred hcCCEEEEeCCchh-----------hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHH
Confidence 88999999998543 23333333321 11111 2355667777788887766543
No 157
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=5.6e-05 Score=76.03 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=56.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..+....+..+|++|+|++++.+.+.+.. .+ ....+....++++++++||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999986665323689999999999988876521 00 00135667888888999999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|++++
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98886643
No 158
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.89 E-value=0.00014 Score=62.85 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=47.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | ..+.++... ....+.+++|+++.++.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 488855 5787652100 1 111111110 112467789999988899
Q ss_pred cEEEEec
Q 011641 80 DIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|++|-+.
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
No 159
>PLN02306 hydroxypyruvate reductase
Probab=97.87 E-value=0.00038 Score=71.75 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=72.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|||||+|.+|..+|..+++.+ |.+|++||+.... .+...... ....+.+.. ....+...++++.++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 57999999999999999986432 8999999987532 11110000 000000000 00123345889999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|++++|-.. ++..+. -+.....++++.++|+.+-.+.=....+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~li--n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLI--NKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 122222 1345567899999998653322223446666665
No 160
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.87 E-value=0.00015 Score=72.96 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.... .. ... ..++++.++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 5799999999999999988765 8999999874310 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... +..+. -+.....++++.++|+.+=...=..+.|.+.|++.
T Consensus 201 v~l~~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTET-----------TQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCChH-----------Hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 11111 13445668899999986543333345577777653
No 161
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=4.5e-05 Score=75.42 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=55.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE-CCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|+||| .|.||.+||.+|.++ |+.|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4799999 999999999999998 99999995 321 345668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|++.|.. +.. ..+++|++||+.++
T Consensus 203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence 999999987531 121 12788999998654
No 162
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.85 E-value=9.8e-05 Score=72.12 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=49.5
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+|+ |.||..++..+.+. +++++.+ +|+++++.... . . ..+..++|+++.+++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~--~-----~------------~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ--G-----A------------LGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc--C-----C------------CCccccCCHHHhccC
Confidence 689999998 99999999888764 4777665 88887654322 0 0 124456788887778
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998864
No 163
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.84 E-value=9.8e-05 Score=74.20 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=53.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+... ......++..+++.++|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG----------------GNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC----------------CeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998752 4789999999998877664210 011111345566789999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
No 164
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.83 E-value=0.00023 Score=71.66 Aligned_cols=102 Identities=9% Similarity=0.117 Sum_probs=68.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+... .. ... ..++++.++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 4799999999999999998765 899999998521 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... +..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 201 v~l~lPlt~~-----------T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTEH-----------TRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCChH-----------HhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 11111 13445678899999986543332345577777653
No 165
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=0.00015 Score=73.01 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=69.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. ++..... +........ .+.+++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~~~-~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAME--------LEDCAFPLL-AEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeehh--------hhhcccccc-CceEEecC
Confidence 69999999 99999999999876 44 79999995432 2221110 000000000 12344444
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
..+.+++||+||++-..|..... + +. +.+.+++..+.|.++.+++.+++.- |.|.....
T Consensus 72 ~~~~~~daDivvitaG~~~k~g~---t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t 135 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPGM---E-RADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTNA 135 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHHH
Confidence 44569999999999887654311 1 12 2344566667777777545555443 46655543
No 166
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.78 E-value=0.00019 Score=70.71 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|++++|++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4799999999999999999998 89999999999988776642100 0112222211122457999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
||-|+|.....+ .+-..+ -...++++.+|++.++.|+.| .+.+..++
T Consensus 182 vInatp~gm~~~-------~~~~~~------~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 182 IINATSAGMSGN-------IDEPPV------PAEKLKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred EEECCCCCCCCC-------CCCCCC------CHHHcCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 999987642210 100000 013467788999999998877 24444444
No 167
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.78 E-value=0.00017 Score=70.85 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=47.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECC-HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|+| +|.||..++..+... +++++.+ +|++ ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 78999999 699999999999875 5888665 7743 322100 0000000 00013567788887545
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
.+|+||.|++
T Consensus 68 ~~DvVIdfT~ 77 (266)
T TIGR00036 68 DPDVLIDFTT 77 (266)
T ss_pred CCCEEEECCC
Confidence 6899999975
No 168
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.0031 Score=63.91 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=137.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHH----HHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.+|-|+|+|.++.-+|..|.+++ .+.|=.+.|...+-+ .++++...+. .+.+.-......|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~-v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFE-VSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEE-EeecchhhhhhcCeEEhhHhhcCHH
Confidence 678999999999999999999873 346878888665544 4444221111 1110000011234443 345677
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CC-CCcEEEEecCCCcchHHHHHHHHHhcCCCC---
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SK-SDKIVVEKSTVPVKTAEAIEKILTHNSKGI--- 148 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~-~~~iVi~~STv~~gt~~~l~~~l~~~~~g~--- 148 (480)
++..+=|.+|+|||+. +-.+++++|... |+ -.++|.+++|+. +..-++..+.+.+...
T Consensus 79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtfG--S~~lv~~~l~~~~~~~EVI 141 (429)
T PF10100_consen 79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTFG--SHLLVKGFLNDLGPDAEVI 141 (429)
T ss_pred HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECcccc--hHHHHHHHHHhcCCCceEE
Confidence 7667889999998863 235666766432 22 256777777774 3344555666544211
Q ss_pred ceEEeeCCcccccc----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHh---------
Q 011641 149 KFQILSNPEFLAEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS--------- 215 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~--------- 215 (480)
.|.--++-.+...+ +++.... -.++.+|+... +.....++..+++.++. ......++-.||.-
T Consensus 142 SFStY~gdTr~~d~~~~~~vlt~~v-K~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVHpp 217 (429)
T PF10100_consen 142 SFSTYYGDTRWSDGEQPNRVLTTAV-KKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVHPP 217 (429)
T ss_pred EeecccccceeccCCCcceehhhhh-hceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecCCh
Confidence 12111222222111 1111111 23688887643 34568889999998853 23444567777742
Q ss_pred ----hhh-----------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 216 ----KLA-----------------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 216 ----Kl~-----------------------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++. .-....-+...+.|++.+..++|++.-.+++.++.|
T Consensus 218 lfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 218 LFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred HhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 111 122445667889999999999999999999999976
No 169
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.76 E-value=0.00035 Score=70.39 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=71.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
.||+|||+ |.+|.++|..|... +. ++.++|+++ ++++..........-+ ...+.+++++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~---------~~~~~~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP---------LLAGVVATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHHHhhcccc---------ccCCcEEecC
Confidence 58999998 99999999999876 43 899999964 2232222110000000 0012334344
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
..+.+++||+||++-..|..... + +.| .+.+++..++|.++.+++.+++.- |.|....-.
T Consensus 73 ~~~~~~daDvVVitAG~~~k~g~---t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 137 (323)
T TIGR01759 73 PEEAFKDVDAALLVGAFPRKPGM---E-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNAL 137 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 34559999999999887654311 1 222 344666777777777645555443 467665443
No 170
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.75 E-value=0.00017 Score=70.81 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=45.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+. ++.++.++ +++. ..+...+. + .....+++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~-~~~~~~~~------------~----~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEH-SIDAVRRA------------L----GEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCC-CHHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence 79999999999999999999874 45665543 3321 11111110 0 01246677887753568
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999764
No 171
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.70 E-value=0.0002 Score=65.85 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=74.7
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|+. +-+..+++.|..-|++|.+|||...+.......
T Consensus 31 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---------------------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG----------RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---------------------- 78 (178)
T ss_dssp BS-STTSEEEEESTS----------HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred ccccCCCEEEEEEEc----------CCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence 457899999999974 578999999999999999999999876522221
Q ss_pred ceEEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ ...++++.++.+|+|++..+- ++-++ ++- +..+.|++.+++|++-+ ++|.+.+-
T Consensus 79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~-~~l~~mk~ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLINA-EFLAKMKPGAVLVNVARGELVDEDALL 138 (178)
T ss_dssp TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH-HHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred cc-eeeehhhhcchhhhhhhhhccccccceeeee-eeeeccccceEEEeccchhhhhhhHHH
Confidence 23 245899999999999999885 33333 454 55678888889999866 77765444
No 172
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00015 Score=69.43 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=38.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|.|||+|.+|.++|..|.+. ||+|+++|+++++++...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 8999999999999999999998 9999999999999888443
No 173
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.69 E-value=0.00056 Score=61.39 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=58.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|-|.+|..+|..|... |.+|+++|+||-+. ++...| ++. .+.++++..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~dG--------------------f~v-~~~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMDG--------------------FEV-MTLEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHTT---------------------EE-E-HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhcC--------------------cEe-cCHHHHHhhCC
Confidence 4799999999999999999998 99999999999653 333333 343 35788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
++|.++....- .+ .+..+.++++.++.+.+..+.+
T Consensus 81 i~vtaTG~~~v---------i~--------~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 81 IFVTATGNKDV---------IT--------GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEEECCCCccc---------cC--------HHHHHHhcCCeEEeccCcCcee
Confidence 99988664210 11 2233557889988776555444
No 174
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.69 E-value=0.00011 Score=66.63 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=74.2
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+++|+. .....+++.|.++|++|.+||..-...+... ..+.+.++
T Consensus 2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~----------------------~~g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALA----------------------EAGAEVAD 49 (163)
T ss_dssp BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHH----------------------HTTEEEES
T ss_pred CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhH----------------------Hhhhhhhh
Confidence 489999984 5899999999999999999997543322221 13578899
Q ss_pred CHHhhcccccEEEEEecCcc-cccccHHH--HHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLDYQR--IYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~~~~--~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
++.|+++++|+|++++.+++ .++. +.. +...+++..+|||+..+-.. +.+++.|+.|.--
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 99999999999999998854 3331 122 66667677799999988764 3445678888654
No 175
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.0001 Score=72.33 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=56.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||. |.||.|||..|.++ |+.|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999998 9999998310 125667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|... .. ..+++|++||+.|+.
T Consensus 204 IVI~avg~~~~v--------------~~------~~ik~GavVIDvgin 232 (284)
T PRK14179 204 ILVVAIGRGHFV--------------TK------EFVKEGAVVIDVGMN 232 (284)
T ss_pred EEEEecCccccC--------------CH------HHccCCcEEEEecce
Confidence 999999976321 11 237889999986643
No 176
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.69 E-value=0.0003 Score=70.40 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=67.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-c--CHHHhhc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-T--DVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~--d~~~a~~ 77 (480)
|||+|||+ |.+|.++|..|+..+--.++.++|++ +.+ |..- ++... .....++.+ . |+.+.++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~----g~al----DL~~~---~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP----GVAA----DLSHI---NTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc----eeeh----HhHhC---CCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999876212589999998 221 1100 01000 001135532 2 3345599
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||++...|..... + +. +.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus 68 daDivvitaG~~~k~g~---t-R~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv 122 (310)
T cd01337 68 GADVVVIPAGVPRKPGM---T-RDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNS 122 (310)
T ss_pred CCCEEEEeCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhh
Confidence 99999999988754411 1 22 23445555666666644 444443 3567665
No 177
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.68 E-value=0.00038 Score=64.99 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=50.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|++||+|.+|..+...+...-..+ -|.+||++.+++..+.+.. +.+..+++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999999998777520023 4889999999988776531 1123478888789999
Q ss_pred EEEEec
Q 011641 81 IVFVSV 86 (480)
Q Consensus 81 vVii~V 86 (480)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999994
No 178
>PRK05442 malate dehydrogenase; Provisional
Probab=97.68 E-value=0.00039 Score=70.14 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCC-----eEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
++||+|||+ |.+|.++|..|+..+--- ++.++|++++ +++.... ++........ .+.+++++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~~-~~~~i~~~~ 74 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPLL-AGVVITDDP 74 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhhc-CCcEEecCh
Confidence 369999998 999999999888651112 7999999643 2222111 0111110000 123444454
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+.+++||+||++-..|..... + +. +.+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 75 y~~~~daDiVVitaG~~~k~g~---t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 138 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGM---E-RKDLLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTNAL 138 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHHHH
Confidence 4569999999999876643310 1 22 2234566666777766556655544 366655443
No 179
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.63 E-value=0.00042 Score=71.61 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=64.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +... .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence 4799999999999999999987 89999999999765433321 1222 244667889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
+|.+++++ .++ ......++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99886642 122 23556788899888765543
No 180
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.63 E-value=0.0002 Score=62.78 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCC--EEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN--LFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~--l~~t~d~~~a~~~ 78 (480)
.++.|||+|-+|..++..|+.. |.+ |++++|+.++.+.+.+.. . ... ....++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~------------~---~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF------------G---GVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH------------T---GCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc------------C---ccccceeeHHHHHHHHhh
Confidence 4799999999999999999998 765 999999999998887521 0 011 2234555566889
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||.|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998765
No 181
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00031 Score=70.28 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=69.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..+....+-.+|.+|++++++.+++.+... . ....+. ..+.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999753223579999999999888765210 0 000122 4678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+.|+|++. | + +. ..+++|+.|...++-.|+..|
T Consensus 192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCccc
Confidence 999987642 1 1 11 235788888766665565543
No 182
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.61 E-value=0.0003 Score=73.65 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=63.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+....... +.+. .+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence 4799999999999999999987 89999999998765322211 1222 356778899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|++|+.++.- . -......++++.++++.+-.
T Consensus 313 VI~atGt~~i---------I--------~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKDI---------I--------TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcccc---------c--------CHHHHhccCCCcEEEEcCCC
Confidence 9999654310 1 12445668889999875443
No 183
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.60 E-value=0.00041 Score=70.13 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=68.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... .+ ....+...++.++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ-----------SK-FNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------Hh-cCCcEEEeCCHHHHHhcCCE
Confidence 4799999999999888777643113589999999999887764200 00 01124556788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+|++. . .+. ..+++|+.|+...+..|+..
T Consensus 196 Vi~aT~s~~-p----------------~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 196 IVTVTNAKT-P----------------VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred EEEccCCCC-c----------------chH---HhcCCCcEEEecCCCCcccc
Confidence 999987541 1 111 45678888865544444443
No 184
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.58 E-value=0.00056 Score=71.15 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=64.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +... .+.+++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999987 89999999998775433221 1222 346677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
||.|++++ .++ ......++++.++++.+..+
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 99986542 122 24556788899888765443
No 185
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00029 Score=70.96 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|..-|++|.+|||+...+... ....
T Consensus 139 el~gkTvGIiG~G----------~IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~~ 185 (324)
T COG0111 139 ELAGKTVGIIGLG----------RIGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDGV 185 (324)
T ss_pred cccCCEEEEECCC----------HHHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------cccc
Confidence 5679999999984 467899999999999999999988765221 1234
Q ss_pred EEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
...+++++.++.+|+|+++++- ++=++ ++.++ ...|++..++|.+-+ ++|.+.+-
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~-~a~MK~gailIN~aRG~vVde~aL~ 244 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEE-LAKMKPGAILINAARGGVVDEDALL 244 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHH-HhhCCCCeEEEECCCcceecHHHHH
Confidence 4457899999999999999887 44444 45554 568888889999866 77765444
No 186
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.56 E-value=0.00074 Score=67.91 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=66.5
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHH--HHHcCCCCCcCCChHHHHhhhcCCCEEEecCH---HH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV---EK 74 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~ 74 (480)
|+||+|||+ |.+|..+|..|+.+....++.++|++...-+ .|+... ..-.+..++|. .+
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~---------------~~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHID---------------TPAKVTGYADGELWEK 72 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcC---------------cCceEEEecCCCchHH
Confidence 679999999 9999999999985522468999999321111 111100 00124433331 45
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
++++||+||++...|..... + +.| .+.+.++++.+.++ .++.+|+ .+|.|....-.+
T Consensus 73 ~l~gaDvVVitaG~~~~~~~---t-R~dll~~N~~i~~~i~~~i~~~-~~~~ivi-v~SNPvdv~~~~ 134 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGM---T-RDDLFNTNAPIVRDLVAAVASS-APKAIVG-IVSNPVNSTVPI 134 (321)
T ss_pred HhCCCCEEEECCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHH-CCCeEEE-EecCcHHHHHHH
Confidence 69999999999988754310 0 111 11233334444444 2344443 477777664443
No 187
>PRK04148 hypothetical protein; Provisional
Probab=97.54 E-value=0.00065 Score=59.10 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=62.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.+||+| -|..+|..|++. |++|+++|+|++.++..++....... +.+ +..+++ ..+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 999999999998 99999999999999887754222110 111 223333 4689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV 124 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi 124 (480)
|..+=|.|. +...+-.++.....+-+|.
T Consensus 81 iysirpp~e---------------l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPRD---------------LQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCHH---------------HHHHHHHHHHHcCCCEEEE
Confidence 999877541 3444556666665444443
No 188
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.53 E-value=0.00013 Score=62.75 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=54.8
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhccC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (480)
||+||| .|++|..+...|+++ |.+++.. +.++.+.-..+....... .+. ..+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~~---------~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KGF---------EDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TTT---------EEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--ccc---------cceeEeecchhH-hhcC
Confidence 799999 999999999999986 6777554 555442211222111000 000 1233333 4444 7999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|+|+. ...+... ..++.+..||+.|+
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~---~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAP---KLLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHH---HHHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHH---HHhhCCcEEEeCCH
Confidence 9999997731 1122222 23456778888664
No 189
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.53 E-value=0.00048 Score=70.88 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=68.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.+.++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999988 889999999999887775421 11100 00001234556789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||.|++.|... .+-+ +.+.....++++.+|++-+.-+.|..+
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCVE 275 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence 99998543211 1110 113333556888888887755555543
No 190
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.53 E-value=0.00034 Score=60.04 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
||+||| .|.+|..++..|... +++++..+ +++.++-+.+......+.. .. ...+. .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999999989874 47888776 6554332222211100000 00 00111 2222 2589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|+||+|+|... ..+.+..+.+.+.++++||++|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999988532 233333455556789999988754
No 191
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.52 E-value=0.00076 Score=69.93 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=63.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+..... | ... .+.+++++.+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 4799999999999999999887 88999999999887665432 1 222 234567789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
||.|++++ .++ +.....++++.++++.+.
T Consensus 261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 99997643 122 334567888888877653
No 192
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.50 E-value=0.00072 Score=68.77 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|+|+|.||..++..+..+ ++++|.+ +|++++..+.+.+ ...+.+.+ ..+.........+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 78999999999999999988875 5788775 5667766665543 11222211 1111100111346777777777788
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999764
No 193
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.49 E-value=0.00092 Score=66.78 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=70.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+=.+|.+|++++++.+++.+.. .+.....+...+++++++++||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 469999999999999988886533468999999999988876421 00001236777899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. ...+++++.|....+..|+.
T Consensus 186 V~taT~s~~----------P----~~~-----~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 186 ITSITNSDT----------P----IFN-----RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCceEEecCCCCCCc
Confidence 999976531 1 110 13567787776544445554
No 194
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.49 E-value=0.0007 Score=70.86 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=53.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... | .+|++++++.++.+.+.+... .......+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~g----------------~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKELG----------------GEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHcC----------------CeEeeHHHHHHHHhhCC
Confidence 4799999999999999999987 7 789999999988776654200 01111234556688999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 243 vVi~aT~s~~ 252 (417)
T TIGR01035 243 IVISSTGAPH 252 (417)
T ss_pred EEEECCCCCC
Confidence 9999987653
No 195
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.49 E-value=0.0019 Score=66.36 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=71.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-CCC----eEEEE--ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-PSI----EVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+... .+. .+.++ |+++++++..... +........ .+++++++..
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 38999999 999999999998762 121 34445 8888876654421 111110011 2355444444
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|..... + +.| .+.+++..+.|.++.+++.+|+.- |.|..+.-.
T Consensus 116 ~~~kdaDIVVitAG~prkpg~---t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t~ 178 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGM---E-RADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNAL 178 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHHH
Confidence 569999999999887754311 1 222 344555666666666566655543 466655433
No 196
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.48 E-value=0.0008 Score=69.59 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=39.0
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCC
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQL 47 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~ 47 (480)
|||.++|+|++|. .++..|++. |++|+++|++++.+++|++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence 8999999999998 457888887 8999999999999999997643
No 197
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.48 E-value=0.00072 Score=67.65 Aligned_cols=66 Identities=17% Similarity=0.410 Sum_probs=47.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|+||..++..+.++ ++.++++ +|+++ +++. .+ . ....+.|.++.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6899999999999999988875 6889886 69985 4332 11 1 112234555667889
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998764
No 198
>PRK05086 malate dehydrogenase; Provisional
Probab=97.47 E-value=0.0012 Score=66.40 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-cCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE--ecCHHHhh
Q 011641 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
|||+|||+ |.+|..+|..+.. ...+++++++|+++.. .+. ..+.+... ...++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~~--------~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIPT--------AVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCCC--------CceEEEeCCCCHHHHc
Confidence 89999999 9999999988854 2225789999997542 110 01100000 012232 35655668
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++|+||+|...+..... .+.| .+.+.+..+.+.++. ++.+|+ .+|.|..+.-.
T Consensus 68 ~~~DiVIitaG~~~~~~~----~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t~ 126 (312)
T PRK05086 68 EGADVVLISAGVARKPGM----DRSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTVA 126 (312)
T ss_pred CCCCEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHHH
Confidence 999999999988754310 0112 123344455555553 344444 36778765443
No 199
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.47 E-value=0.00078 Score=77.01 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=54.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCe-------------EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|+||+|||+|.||.+.|..|++. ++.+ |++.|+++++.+.+.++.. +. ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence 46899999999999999999975 3555 9999999999888776421 10 0122
Q ss_pred E-ecCHHHh---hccCcEEEEeccCCC
Q 011641 68 F-STDVEKH---VSEADIVFVSVNTPT 90 (480)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~Vptp~ 90 (480)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3454443 367999999999754
No 200
>PRK11579 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.0012 Score=67.23 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=48.3
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+... ++.+++ ++|+++++... . . +...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~-~----------------~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---D-W----------------PTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---h-C----------------CCCceeCCHHHHhcCC
Confidence 58999999999974 56666653 578876 58999876531 1 0 12345678888775
Q ss_pred cCcEEEEeccCCC
Q 011641 78 EADIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|++|+|+..
T Consensus 64 ~vD~V~I~tp~~~ 76 (346)
T PRK11579 64 NIDLIVIPTPNDT 76 (346)
T ss_pred CCCEEEEcCCcHH
Confidence 5799999988643
No 201
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.44 E-value=0.0028 Score=63.53 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|+|.+|..+|..|..- | .++.| .|++..-+...+- ... ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~-------------------~~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY-------------------YAE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh-------------------ccc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 55555 4433322222110 001 245677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|-. .++..+ +=+.+...++++.++|+.+-......+.+.+.|++.
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999998742 222222 235677889999999876544445556677777664
No 202
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.43 E-value=0.0023 Score=66.93 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=73.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHc-------CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|.++|..|+.. .--.+++++|+++++++...-. +.....-.. .++.++++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 99999999999864 1113799999999887654421 111110011 2355444444
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|.... ..+.| .+.+++..+.|.++..++.+|++- |.|..+.-.
T Consensus 172 e~~kdaDiVVitAG~prkpG----~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGPG----MERADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 55999999999988765431 11222 333455556666643445555443 466655443
No 203
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.43 E-value=0.00095 Score=67.34 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=69.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+..+- .+++.++|+++ ++.+.... ++........ ...+++++..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~~-~~~~i~~~~~ 71 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPLL-KGVVITTDPE 71 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhccccc-CCcEEecChH
Confidence 38999999 9999999999987510 12599999987 43322111 1111100000 1234444555
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+++++||+||++-..|..... ++ ..+.+.+++..+.|.++.+++.+++.- |.|....
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~---tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGM---ERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCC---cHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 679999999999887654311 11 012334556666777775445555443 4665543
No 204
>PLN02494 adenosylhomocysteinase
Probab=97.43 E-value=0.00082 Score=70.26 Aligned_cols=88 Identities=22% Similarity=0.147 Sum_probs=63.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+. +....| ... .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999876 89999999998764 333322 122 24567788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|.++.. -+.......++++.++++.+-.
T Consensus 312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCCC
Confidence 9998765431 0124455678899999886653
No 205
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.42 E-value=0.00089 Score=67.78 Aligned_cols=71 Identities=25% Similarity=0.371 Sum_probs=51.2
Q ss_pred CcEEEEECCChhH-HHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEecCHHHhh
Q 011641 1 MVKICCIGAGYVG-GPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~ 76 (480)
++||||||+|.++ ...+..+... ++ .-|.++|+++++.+.+.+.. ++ .+.+|+++.+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~------------------~~~~~~~~~~~ll 63 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF------------------GIAKAYTDLEELL 63 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc------------------CCCcccCCHHHHh
Confidence 4799999999555 5677778775 12 24667799999988776521 11 4667888877
Q ss_pred cc--CcEEEEeccCCC
Q 011641 77 SE--ADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~--aDvVii~Vptp~ 90 (480)
++ .|+|+||+|+..
T Consensus 64 ~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 64 ADPDIDAVYIATPNAL 79 (342)
T ss_pred cCCCCCEEEEcCCChh
Confidence 64 699999988654
No 206
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.0011 Score=66.70 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=71.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+... +. .-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ---AL----------GFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH---hc----------CCcEEEECCHHHHhcCCCE
Confidence 4699999999999999988865445789999999999887764210 00 1235667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. ...+++|+.|..-++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999976531 1 111 14567898887655555554
No 207
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.40 E-value=0.00037 Score=72.03 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=63.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE------EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
++|+|||+|.+|...|.+|... |++|+ ++|.+.+..+...+. ++.. .+++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999999987 89988 444443333332221 2333 457888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++.||+|++.+|... -..+.+++.++++++.++..+-
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence 999999999987421 1344588999999999886543
No 208
>PRK06046 alanine dehydrogenase; Validated
Probab=97.37 E-value=0.0018 Score=65.56 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=68.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..|+...+-..|.+||+++++.+++.+... +...-.+...++.+++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999999854223578899999998887764210 000112556778888886 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|++|+|+.. | +.. ...+++++.|..-++..|+..
T Consensus 197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~~ 230 (326)
T PRK06046 197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGKQ 230 (326)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCccc
Confidence 999987531 1 111 235678888765555555543
No 209
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.36 E-value=0.00095 Score=67.65 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=56.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|...+..++...+..+|.+|+|++++.+.+.+..... ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~------------~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE------------LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc------------cCceEEEeCCHHHHHccCCE
Confidence 579999999999998888875322368999999999998886521000 00124556888888999999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|+|+.
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99997753
No 210
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0015 Score=65.71 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=85.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
..++|||+|..+......+..-.+--+|.+|+++++..+++.+.- -++ ....+...++.++++++||+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l-----------~~~-~~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL-----------RKR-GGEAVGAADSAEEAVEGADI 198 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH-----------Hhh-cCccceeccCHHHHhhcCCE
Confidence 358999999999999999987655678999999999988877420 000 00125778899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+.|+|+.. |-+ -...+++++.|...++-.|+..+--.+++... +-.++..++..
T Consensus 199 Ivt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 199 VVTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 999977642 221 13567789988776666666654333445443 13456777654
No 211
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.35 E-value=0.00091 Score=61.22 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=63.4
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
|.|+|+ |.+|..++..|.++ |++|+++-|++++.+. ..+ ..+.. +.+.-..+..++++++|.|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789995 99999999999998 8999999999998877 211 11110 0110012345678899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|.+++.+.. |....+.+++.+... +...+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975431 344445555554443 33455555443
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.34 E-value=0.00058 Score=72.14 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHh-hccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...++.. +..+-...++++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999988865 2111110 111111123333 6789
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+|++++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999764
No 213
>PRK07574 formate dehydrogenase; Provisional
Probab=97.34 E-value=0.00095 Score=68.75 Aligned_cols=103 Identities=12% Similarity=0.205 Sum_probs=76.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||.....+....+ ++
T Consensus 189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~ 236 (385)
T PRK07574 189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL 236 (385)
T ss_pred ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence 4689999999984 578899999999999999999986433322221 24
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
++..++++.++.+|+|+++.+-.+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 295 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAVV 295 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHHH
Confidence 556789999999999999988643 233 34 456778998889999865 66765443
No 214
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.33 E-value=0.0028 Score=66.21 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=54.0
Q ss_pred cEEEEECCChhHHHH-HHHHHHc---CCCCeEEEEECC-HHHHHHHHcCCCCCcCCChHHHHhhhc-CCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPT-MAVIALK---CPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCR-GKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~---~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~-~~~l~~t~d~~~a 75 (480)
|||+|||.|..-++- ...|++. .++-+|+++|+| +++++.+.+- ....+++.. .-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 799999999975533 3444442 245789999999 7887654320 011111111 1357889999999
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999997643
No 215
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.33 E-value=0.00074 Score=63.34 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
.||+|+|+|.+|..+|..|++. |+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999998 87 69999998
No 216
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.32 E-value=0.0014 Score=70.67 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=77.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||....+.. .++ ++
T Consensus 135 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 181 (525)
T TIGR01327 135 ELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------GV 181 (525)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 4689999999984 47789999999999999999998654332 211 24
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+.+++++.++++|+|+++.+.. +-++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL~ 240 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIG-AEELAKMKKGVIIVNCARGGIIDEAALY 240 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcC-HHHHhcCCCCeEEEEcCCCceeCHHHHH
Confidence 45568999999999999999874 4444 44 355668988889999865 77765443
No 217
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.31 E-value=0.00093 Score=68.06 Aligned_cols=34 Identities=32% Similarity=0.695 Sum_probs=27.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||||+|||+ |++|..++..|+++ ++++++.+-.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECc
Confidence 689999996 99999999999875 67887664433
No 218
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.30 E-value=0.00085 Score=67.80 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-----CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||+|+|+ |.+|..++..|.... .+.+|.++|+++.. +.+ .+.. -++...... ..++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~~-~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAFP-LLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhcccc-ccCCceecCCHHHH
Confidence 58999998 999999999998741 13589999996531 111 1100 001100000 01244556776667
Q ss_pred hccCcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~--~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||++-..|..... ++. ...+.+.+++..+.|.++.+++.+++.-| .|...
T Consensus 76 l~~aDiVI~tAG~~~~~~~-~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~ 133 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGM-ERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT 133 (325)
T ss_pred hCCCCEEEEeCCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence 9999999999876643210 000 01123344556667777765566555433 45444
No 219
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.29 E-value=0.0017 Score=66.00 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=70.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+..-.+-.+|++|++++++.+++.+... +.+ -.+..+++.++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~~----------~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GPG----------LRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hcC----------CcEEEeCCHHHHHhcCCE
Confidence 3699999999999888777654345689999999999888764210 001 136677899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+++... .| + ++ .+.+++|+.|....+..|+..
T Consensus 197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCcc
Confidence 9999764310 01 1 11 145688887765555555543
No 220
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.29 E-value=0.0018 Score=67.91 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=53.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+... .......+..+.+.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEFG----------------GEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcC----------------CcEeeHHHHHHHhccCC
Confidence 5799999999999999999987 76 89999999998877654210 01111234556678999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 245 vVI~aT~s~~ 254 (423)
T PRK00045 245 IVISSTGAPH 254 (423)
T ss_pred EEEECCCCCC
Confidence 9999988653
No 221
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.28 E-value=0.0033 Score=60.91 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=48.2
Q ss_pred cEEEEECCChhHHHHHHHHHHc-CCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh-hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALK-CPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
+||+|||+|+||..++..+... ..+++ +.++++++++.+.+... ....+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 6999999999999999998763 11354 44688888777766532 3355677773 578
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.|-.
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999943
No 222
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.28 E-value=0.0015 Score=65.71 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=62.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+-.+|.+|++++++.+++.+.... ..-.+..++|.++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------------LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------ccccceeccchhhhcccCCE
Confidence 36999999999999999888765556899999999998887652111 01247788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|+.... |=+ -...+++++.|...+.-.|+.
T Consensus 196 i~taT~s~~~~--------P~~---------~~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTPA--------PVF---------DAEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSEE--------ESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCCC--------ccc---------cHHHcCCCcEEEEecCCCCch
Confidence 99997754200 101 024677888886655554443
No 223
>PLN03139 formate dehydrogenase; Provisional
Probab=97.28 E-value=0.0014 Score=67.53 Aligned_cols=103 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-+..+++.|...|++|.+|||.....+.... .++
T Consensus 196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA 243 (386)
T ss_pred CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence 5789999999974 47789999999999999999997543322221 124
Q ss_pred EEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+.+++++.++++|+|+++.+. ++-++ ++ .++.+.|++..++|++-+ ++|.+.+-
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 302 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFN-KERIAKMKKGVLIVNNARGAIMDTQAVA 302 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhC-HHHHhhCCCCeEEEECCCCchhhHHHHH
Confidence 4556899999999999999885 33333 34 457788998889999854 77765443
No 224
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.26 E-value=0.0015 Score=65.48 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=67.3
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ec--CHHHhhcc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-ST--DVEKHVSE 78 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~--d~~~a~~~ 78 (480)
||+|||+ |.+|.++|..|+.++-..++.++|+++. + |..- ++... ....+++. +. ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a--~----g~a~----DL~~~---~~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA--A----GVAA----DLSHI---PTAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC--c----EEEc----hhhcC---CcCceEEEecCCCchHHHcCC
Confidence 7999999 9999999999988722348999999871 1 2100 01000 00113443 22 23456999
Q ss_pred CcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 79 ADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~--~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||++...|..... .+. -..+.+.+++..+.|.++. ++.++++ -|.|..+
T Consensus 68 aDivvitaG~~~~~g~-~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKPGM-TRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCCCc-cHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 9999999987654311 000 0113344556666666664 4454433 3567665
No 225
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.25 E-value=0.0012 Score=67.38 Aligned_cols=97 Identities=25% Similarity=0.425 Sum_probs=56.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|||+|||+ |++|..++..|.++ |++++. +++.+...-+.+.+-. +.+... ..+.+. .+.++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence 79999998 99999999999976 788888 4565542221121100 000000 011222 244554468
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+|+... .+....+ ...+..||+.|+
T Consensus 69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence 9999999885321 2222222 245788888775
No 226
>PLN00203 glutamyl-tRNA reductase
Probab=97.22 E-value=0.00073 Score=72.21 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... |. +|++++++.++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 5799999999999999999987 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998765
No 227
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.22 E-value=0.0024 Score=64.41 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=68.5
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++.. .+.... . +........ ..+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~~-~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPLL-DGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchhc-CceeccCChHH
Confidence 6999999 9999999999987410 1269999996542 221111 0 100000000 12344445345
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++||+||++-..|..... ++ ..+.+.+++..+.|.++.+++.+++.- |.|......
T Consensus 72 ~~~~aDiVVitAG~~~~~~~---tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 133 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKEGM---ERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTNAL 133 (324)
T ss_pred HhCCCCEEEEcCCCCCCCCC---cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 69999999999887654310 11 112334556666777765455555543 467655433
No 228
>PLN00106 malate dehydrogenase
Probab=97.20 E-value=0.0018 Score=65.15 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHH--HHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~~a 75 (480)
.||+|||+ |.+|..+|..|+.+....++.++|+++..-+ .|..... .-.+. -++|+.++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---------------~~~i~~~~~~~d~~~~ 83 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---------------PAQVRGFLGDDQLGDA 83 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---------------CceEEEEeCCCCHHHH
Confidence 48999999 9999999999996622358999999871100 1111000 01232 23445667
Q ss_pred hccCcEEEEeccCCCCCCC-CCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 76 VSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~-~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
+++||+||++...|..... .+.--..+...+.++.+.+.++. ++.+|+ .+|.|..
T Consensus 84 l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi-vvSNPvD 139 (323)
T PLN00106 84 LKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVN-IISNPVN 139 (323)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE-EeCCCcc
Confidence 9999999999887654310 00000112233444455555554 344443 3567765
No 229
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.19 E-value=0.0018 Score=58.83 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=52.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| .|.+|..++.-..++ ||+|+.+-||++++.... +. .+.+. .+.--+...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~~-~~-~i~q~------------Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAARQ-GV-TILQK------------DIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhccccc-cc-eeecc------------cccChhhhHhhhcCCc
Confidence 8999999 599999999999988 999999999999886642 21 11111 1111122345688999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+...+
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
No 230
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.19 E-value=0.0011 Score=60.98 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=49.8
Q ss_pred EEEEECCChhHHHHHH--HHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhc
Q 011641 3 KICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (480)
||+|||.|..-.+.-. .+... .++.++.++|+|+++++...+- .+.++++ -..-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 8999999988776432 23321 2455899999999998865430 0112222 11234678999999999
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999865
No 231
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.17 E-value=0.0026 Score=67.54 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=69.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-C--------H
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D--------V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (480)
.|+.|+|+|.+|+..+..+... |..|+++|+++++.+..++-.....+....+-- +-..+..+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g-~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG-GSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccc-cccccceeecCHHHHHHHHHHH
Confidence 3799999999999988888887 889999999999988877632222111110000 00011112222 1 2
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
.+.++++|+||.|+--|-.. .| .-+.++..+.++++.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23467899999998222110 11 11235556778899999887654333
No 232
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.14 E-value=0.0014 Score=67.56 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=59.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-E-ecCHHHhhc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-F-STDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~-t~d~~~a~~ 77 (480)
+|||+|+|+ |++|..+...|..+ |+++|+.+..+.+.-+.+......+. .+... + ..+.++ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 479999995 99999999999987 78899999875443222222111110 01111 1 112222 58
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
++|+||+|+|.. +...+.+.+..+..||+.|+-
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 899999998742 234444444567888887763
No 233
>PRK10206 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.002 Score=65.71 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=46.4
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.++.. .+..+....++++|. ++|+++++. ...+.. +...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~-----------------~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY-----------------SHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc-----------------CCCcccCCHHHHhcC
Confidence 689999999997752 344443322357775 689987654 222210 12345678888775
Q ss_pred -cCcEEEEeccCCC
Q 011641 78 -EADIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 63 ~~iD~V~I~tp~~~ 76 (344)
T PRK10206 63 PDVKLVVVCTHADS 76 (344)
T ss_pred CCCCEEEEeCCchH
Confidence 6799999988653
No 234
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.14 E-value=0.0031 Score=64.03 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=74.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||...... ...+ +.
T Consensus 147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~ 193 (333)
T PRK13243 147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA 193 (333)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence 4689999999984 4778999999999999999999765432 1111 12
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ .++++.++++|+|+++++..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL~ 251 (333)
T PRK13243 194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKALV 251 (333)
T ss_pred Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHHH
Confidence 32 478999999999999998754 222 44 356778998889999865 66765443
No 235
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.13 E-value=0.0023 Score=63.84 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=65.9
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccCcEEEE
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEADIVFV 84 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (480)
|||+|.+|.++|..|+.+.-..++.++|+++++++...... ..... ....+.+++ .+++ .+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl--------~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDL--------QHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH--------HHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 69999999999999987622247999999887655433210 00000 001123333 4454 5999999999
Q ss_pred eccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 85 SVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 85 ~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+...|..... + +. +...+++..+.|.++.+ +.+|++- |.|..+.
T Consensus 71 tag~~rk~g~---~-R~dll~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~~ 119 (299)
T TIGR01771 71 TAGAPQKPGE---T-RLELVGRNVRIMKSIVPEVVKSGF-DGIFLVA-TNPVDIL 119 (299)
T ss_pred CCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-CCHHHHH
Confidence 9887654311 1 11 22334555666666644 4444432 4565543
No 236
>PLN02928 oxidoreductase family protein
Probab=97.12 E-value=0.0025 Score=64.97 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=76.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+ ++-+..+++.|...|++|.+|||....+... .++ .|. +........
T Consensus 155 ~~l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~---~~~~~~~~~ 213 (347)
T PLN02928 155 DTLFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPN---GDVDDLVDE 213 (347)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------ccc---ccccccccc
Confidence 3678999999997 3578999999999999999999975432211 000 000 000000000
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.....++++.++.+|+|+++++.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~ 273 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL 273 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 012358999999999999998863 3333322466788998889999854 77866443
No 237
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.10 E-value=0.0035 Score=63.46 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=56.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||+|.+|...+..|+... + .+|++|+|++++.+.+.+... .. ....+...+++++++.+||
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997431 5 579999999999888764210 00 0112455678888899999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999997753
No 238
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.07 E-value=0.004 Score=62.88 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=74.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL-GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-...+++.|. ..|.+|.+|||....+.. ..+ +
T Consensus 142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~ 188 (323)
T PRK15409 142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N 188 (323)
T ss_pred CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence 4689999999984 57789999998 889999999998654321 111 2
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.++ .++++.++.+|+|+++.+..+ -++ ++. +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~vVde~AL~ 247 (323)
T PRK15409 189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-EQFAKMKSSAIFINAGRGPVVDENALI 247 (323)
T ss_pred cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECCCccccCHHHHH
Confidence 333 489999999999999988744 233 454 45678998889999855 77765443
No 239
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.06 E-value=0.0028 Score=61.86 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||.|.-|.+-|.+|.++ |.+|++==+.... .+...+ .++++ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 5899999999999999999998 9997754332221 222221 23443 45688899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~ST 128 (480)
+|++-+|.-.. .++.+ .|.|.|+++..+.....
T Consensus 77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEeccc
Confidence 99999874321 34555 89999999997765443
No 240
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.06 E-value=0.0037 Score=62.79 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=73.3
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||...... ..+
T Consensus 142 ~L~gktvGIiG~G----------~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~ 185 (311)
T PRK08410 142 EIKGKKWGIIGLG----------TIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY 185 (311)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence 3689999999984 4678999999999999999999643210 112
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++.+.. +-++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 186 ~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~-~~~~~Mk~~a~lIN~aRG~vVDe~AL~ 243 (311)
T PRK08410 186 ER-VSLEELLKTSDIISIHAPLNEKTKNLIAY-KELKLLKDGAILINVGRGGIVNEKDLA 243 (311)
T ss_pred ee-ecHHHHhhcCCEEEEeCCCCchhhcccCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 22 47999999999999998874 3344 454 45678998889999765 77865443
No 241
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.06 E-value=0.003 Score=62.47 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=53.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|.+++..|+.. | .+|++++|+.++.+.+.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 4789999999999999999988 7 79999999999988876521100 00122113334578899
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|...
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987654
No 242
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.05 E-value=0.0031 Score=63.83 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+. +-+..+++.|...|.+|.+|||...... . .+.
T Consensus 144 l~g~~VgIIG~G----------~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~------------------------~~~ 187 (330)
T PRK12480 144 VKNMTVAIIGTG----------RIGAATAKIYAGFGATITAYDAYPNKDL--D------------------------FLT 187 (330)
T ss_pred cCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEEeCChhHhh--h------------------------hhh
Confidence 578899999985 4678999999999999999999754321 0 122
Q ss_pred EecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
+..+++++++++|+|+++.+... .+.+=-..+.+.|++..++|++-+ ++|.+.+
T Consensus 188 ~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL 244 (330)
T PRK12480 188 YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDL 244 (330)
T ss_pred ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHH
Confidence 45688999999999999998864 233223567788988889999854 6675544
No 243
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.04 E-value=0.0037 Score=67.40 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=75.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||+...+.. .. .++
T Consensus 137 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~----------------------~g~ 183 (526)
T PRK13581 137 ELYGKTLGIIGLG----------RIGSEVAKRAKAFGMKVIAYDPYISPERA-AQ----------------------LGV 183 (526)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hh----------------------cCC
Confidence 4689999999984 57889999999999999999998654322 11 124
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
++. ++++.++.+|+|+++.+.. +-++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL 240 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIG-AEELAKMKPGVRIINCARGGIIDEAAL 240 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcC-HHHHhcCCCCeEEEECCCCceeCHHHH
Confidence 444 7999999999999999884 3444 34 456788988889999865 6776544
No 244
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.99 E-value=0.0061 Score=61.88 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=52.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC-CCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|||+ .+|...+..+.+. + ++++. ++|+++++.+++.+.. ++...+|+++.+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~ 63 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI 63 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence 58999999 6799899888875 3 56765 5899999988877521 123567888988889
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|++++++||.
T Consensus 64 Di~~V~ipt~ 73 (343)
T TIGR01761 64 DIACVVVRSA 73 (343)
T ss_pred CEEEEEeCCC
Confidence 9999999763
No 245
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.99 E-value=0.0041 Score=66.17 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++++|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999998887764210 00000112222 568999
Q ss_pred EEEeccC
Q 011641 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 394 VInatP~ 400 (477)
T PRK09310 394 IINCLPP 400 (477)
T ss_pred EEEcCCC
Confidence 9999875
No 246
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.99 E-value=0.0034 Score=61.76 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=78.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh-HHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE-DQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+++||. ....+++..|.++|++|.+||..... .+.... .+....
T Consensus 1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA 48 (286)
T ss_pred CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence 379999984 58899999999999999999987665 333322 245677
Q ss_pred cCHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEE
Q 011641 404 WDAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVY 463 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~ 463 (480)
.++.|+++++|+||.+..-+. .++.- ...+.+.+++..++||...+=+. +.+++.|+.|.
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 899999999999999987754 22221 23566677777899999887653 34445677664
No 247
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.95 E-value=0.002 Score=67.12 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=55.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||.|||+|-||..++..|+.+ | .++++++|+.++.+.+.+... .+.....++..+.+..+|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999988 6 579999999999888875310 011122244556688999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999988763
No 248
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0028 Score=63.31 Aligned_cols=76 Identities=30% Similarity=0.537 Sum_probs=46.7
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHh-hc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKH-VS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (480)
|+||+||| .||-|.-+...|+.+ |..+++.+..+..+=+.+.+. .|.+.... .+++.. |.++. .+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~~------~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGLV------DLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Cccccccc------ccccccCChhhhhcc
Confidence 68999999 599999999999987 678877776544322222221 11111100 122222 23332 45
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||+|+|.
T Consensus 70 ~~DvvFlalPh 80 (349)
T COG0002 70 ECDVVFLALPH 80 (349)
T ss_pred cCCEEEEecCc
Confidence 69999999884
No 249
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.94 E-value=0.0035 Score=62.13 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=53.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|.+|.+++..|+.. |. +|+++||+.++.+.+.+...... + ...+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~~~~-~----------~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELNARF-P----------AARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHhhC-C----------CeEEEeccchHhhhCCCC
Confidence 4799999999999999999987 75 79999999999988764210000 0 001222234444578899
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999997653
No 250
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.92 E-value=0.0081 Score=61.71 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=73.2
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-.-.+++.|...|.+|.+|||...... ..
T Consensus 112 ~~L~gktvGIIG~G----------~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~~ 155 (378)
T PRK15438 112 FSLHDRTVGIVGVG----------NVGRRLQARLEALGIKTLLCDPPRADRG--------------------------DE 155 (378)
T ss_pred CCcCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------cc
Confidence 36789999999974 5778999999999999999999543210 00
Q ss_pred eEEecCHHhhcccccEEEEEecCcc------cccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE------FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~------~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
. ...++++.++.+|+|+++++... +.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 156 ~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~ 218 (378)
T PRK15438 156 G-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL 218 (378)
T ss_pred c-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence 1 12478999999999999887532 333454 45678888789999876 88876554
No 251
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.88 E-value=0.0075 Score=59.56 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=46.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHH-HHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.-++..+.+. ++.++. ++|++++... ...+. .|.-...++.++.+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~ 63 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP 63 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence 6899999999999887777653 467766 5788886532 12211 011133456666553
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 64 dIDaV~iaTp~~ 75 (285)
T TIGR03215 64 DIDIVFDATSAK 75 (285)
T ss_pred CCCEEEECCCcH
Confidence 679999998764
No 252
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.84 E-value=0.0075 Score=59.88 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred HHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011641 313 RVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPM 392 (480)
Q Consensus 313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
.+.+..+..+.+++|+|+|... -+..+++.|...|++|.++|..........+++
T Consensus 140 ~al~~~~~~l~gk~v~IiG~G~----------iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g--------------- 194 (287)
T TIGR02853 140 MAIEHTDFTIHGSNVMVLGFGR----------TGMTIARTFSALGARVFVGARSSADLARITEMG--------------- 194 (287)
T ss_pred HHHHhcCCCCCCCEEEEEcChH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC---------------
Confidence 3333333467899999999854 789999999999999999998643322111111
Q ss_pred CcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhhcCcEEE
Q 011641 393 SPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLREIGFIVY 463 (480)
Q Consensus 393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~~g~~y~ 463 (480)
...+. ..++.+.++++|.|+..+++.-+ + ....+.|++..+|||.-.- .+-+.+++.|.+.+
T Consensus 195 ----~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 ----LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKAL 259 (287)
T ss_pred ----Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEE
Confidence 00111 23567788999999999877532 3 3455677877899999763 34466677887664
No 253
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.83 E-value=0.021 Score=63.62 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=85.9
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC----c
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP----E 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (480)
||+|+|. +.+...++++.+.++++++|.+-+++.....+.+.+.+.... .-+|..+| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~---~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARI---GQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccC---CeEEecCCcCcCc
Confidence 6889773 356788999999999999999877666444444444443211 12466666 5
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHhhhhHhHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
..+..++..++++...+++ ++.+.+++++.+.++++++.++ ..+..++++ .-+++-++.-.-+.+..++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il-~p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVL-CALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555567788887777766 4444456788999999999985 466666654 34555555555555555555544
No 254
>PLN03075 nicotianamine synthase; Provisional
Probab=96.83 E-value=0.011 Score=58.44 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=81.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHh---hc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKH---VS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a---~~ 77 (480)
.+|+.||+|..|.+....++.+.++-.++++|++++.++..++.-.. ..++. .+++|. .|..+. ..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999997766666655667899999999988766542100 11221 234442 232221 36
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc-CCCCceEEeeCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN-SKGIKFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~-~~g~~~~v~~~P 156 (480)
+.|+||+.+=-.. |-..-..+++.+.+.+++|.+++..| .-|....+.+.+... ..|.+....+.|
T Consensus 195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 7899999842111 11122678999999999999998876 234444444433221 114444555677
Q ss_pred c
Q 011641 157 E 157 (480)
Q Consensus 157 e 157 (480)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
No 255
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.80 E-value=0.009 Score=61.67 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=55.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|+.|||+|-||.-.|.+|+.+ | .+|++.+|+.++.+.|.+... +....-+++.+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~~----------------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKLG----------------AEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHhC----------------CeeecHHHHHHhhhhCC
Confidence 4799999999999999999998 6 789999999999998876311 12222345566789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999997765
No 256
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.79 E-value=0.0025 Score=64.00 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|.++ ||+|++++|++++...+......+. .+.+.-..++.++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999998 9999999999876554442111111 112221234556788999
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-++..
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
No 257
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.79 E-value=0.002 Score=66.74 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=68.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCC--CCCcCCChHHHHhhhcCCCEEE-ecC---HHHhh
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQ--LPIYEPGLDGVVKQCRGKNLFF-STD---VEKHV 76 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~--~~~~e~~l~~~~~~~~~~~l~~-t~d---~~~a~ 76 (480)
|.|+|+|.+|..++..|+++. .+ +|++.|++.++.+++.+.. ..+. ...+ .+| +++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~--------------~~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVE--------------AVQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEE--------------EEE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcccccee--------------EEEEecCCHHHHHHHH
Confidence 789999999999999999873 35 8999999999999887531 1110 0011 122 44567
Q ss_pred ccCcEEEEeccCCCCCCCC-----CCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecCCCcchHHHHHH
Q 011641 77 SEADIVFVSVNTPTKTQGL-----GAGKAADLTYWESAARVIADVS-KSDKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~-----~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~ 139 (480)
+++|+||-|+|......-. .+....|.+++......+.+.. +.+..++......||.+.-+..
T Consensus 66 ~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~ 134 (386)
T PF03435_consen 66 RGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLAR 134 (386)
T ss_dssp TTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHH
T ss_pred hcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHH
Confidence 8999999999743211000 0011334443333333332222 3577777777888888776543
No 258
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.78 E-value=0.0058 Score=61.11 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=71.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||....... .
T Consensus 119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~ 161 (303)
T PRK06436 119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S 161 (303)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence 4689999999984 56789999998899999999997432100 0
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++.+..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~-~~~l~~mk~ga~lIN~sRG~~vd~~aL 219 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMIN-SKMLSLFRKGLAIINVARADVVDKNDM 219 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcC-HHHHhcCCCCeEEEECCCccccCHHHH
Confidence 113578999999999999988743 333 34 456678888889999865 6665544
No 259
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.78 E-value=0.007 Score=61.38 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=71.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-+..+++.| ...|.+|.+|||...... . ..
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~ 187 (332)
T PRK08605 143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY 187 (332)
T ss_pred eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence 4678999999974 4778899999 567999999999865421 1 11
Q ss_pred eEEecCHHhhcccccEEEEEecCccccc-ccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+....+++++++++|+|+++++...... +--..+.+.|++..++||+.+ +.+..
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 3345689999999999999988765332 211346778888889999866 44443
No 260
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.77 E-value=0.004 Score=56.69 Aligned_cols=53 Identities=28% Similarity=0.531 Sum_probs=43.6
Q ss_pred cEEEEECCChh-HHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|.| |.++|..|.++ |.+|++.+++.+ ++.+.+.++|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99999999998 889999998631 2234588999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999998876
No 261
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.77 E-value=0.0058 Score=64.14 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=52.5
Q ss_pred cEEEEECCChhHHH--HHHHHHHc---CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGP--TMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|.. .+ +...|++. .++-+|+++|+|+++.+.+.+- ..+.+++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA 71 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA 71 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999986 32 33344432 2467999999999988764420 01111111 12357889999999
Q ss_pred hccCcEEEEecc
Q 011641 76 VSEADIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+++||+||.++-
T Consensus 72 l~gADfVi~~ir 83 (437)
T cd05298 72 FTDADFVFAQIR 83 (437)
T ss_pred hCCCCEEEEEee
Confidence 999999999875
No 262
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.77 E-value=0.01 Score=50.14 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=49.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|.|+|.|.+|..++..|.+. +.+|+++|.++++++.+.+...++. ++.-.+.+.+ .-+++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 67999999999999999996 7799999999999999886433221 1111111111 12578999
Q ss_pred EEEecc
Q 011641 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
++++++
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 999965
No 263
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.76 E-value=0.013 Score=60.49 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=73.1
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-+..+++.|...|.+|.+|||...... .
T Consensus 111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~ 154 (381)
T PRK00257 111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G 154 (381)
T ss_pred CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 346789999999984 4678999999999999999999532110 0
Q ss_pred ceEEecCHHhhcccccEEEEEecCc------ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWD------EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~------~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
... ..++++.++++|+|+++++.. .+.=++-+ ..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~-~l~~mk~gailIN~aRG~vVde~AL~ 218 (381)
T PRK00257 155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA-FLASLRPGAWLINASRGAVVDNQALR 218 (381)
T ss_pred Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH-HHhcCCCCeEEEECCCCcccCHHHHH
Confidence 111 247899999999999999873 33335544 5677888779999765 77765554
No 264
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.76 E-value=0.0095 Score=63.15 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=83.5
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .....++..|.++|.+|.+||...+..+...+... +.+ ..+..++
T Consensus 2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH 55 (470)
T ss_pred CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence 379999985 58899999999999999999986554322111000 000 1244567
Q ss_pred CHHhhcc---cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCCc
Q 011641 405 DAYEATK---DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLDP 471 (480)
Q Consensus 405 ~~~~a~~---~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~~ 471 (480)
++.++++ .+|+|++++...+.-+--.+.+...+.+..+|||+.+.... ..+++.|+.|.+.|..+-+
T Consensus 56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 8888886 48999999777654332235677777766799999998753 3455679999988765443
No 265
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.76 E-value=0.0062 Score=60.74 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... .++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF 60 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence 468999999998 478999999999999999999754332222221 123
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
+. .++.++++.+|+|+++.+.++=+++=...+...|++..+++=.
T Consensus 61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC
Confidence 33 3899999999999999987554443225677888776555433
No 266
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.75 E-value=0.0092 Score=59.14 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-++.+++|+|+|.+- ....+++..|.++|++|.+|+-..
T Consensus 143 p~aii~lL-~~~~i~l~Gk~V~vIG~s~---------ivG~PmA~~L~~~gatVtv~~~~t------------------- 193 (301)
T PRK14194 143 PSGCLRLL-EDTCGDLTGKHAVVIGRSN---------IVGKPMAALLLQAHCSVTVVHSRS------------------- 193 (301)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEECCCC-------------------
Confidence 33444433 3334478999999999642 578999999999999999986432
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.+-.-+| +++..+|||.-
T Consensus 194 -----------------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 194 -----------------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred -----------------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 256788899999999999998654333 45567999986
No 267
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.72 E-value=0.0051 Score=60.56 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=54.6
Q ss_pred cEEEEECCChh-HHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|.+ |.|+|..|.++ |..|+++... |.|+.+.++.||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999998877 99999999988 8999986431 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++++|.- +. ...++++.+||+.+
T Consensus 204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG 230 (285)
T PRK14189 204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG 230 (285)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999997631 11 15678999998754
No 268
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.72 E-value=0.0063 Score=66.76 Aligned_cols=73 Identities=14% Similarity=0.317 Sum_probs=53.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+.. +..-.+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4689999999999999999988 9999999999999999886433332 2221221111 125689
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|.++++++++
T Consensus 466 ~~vv~~~~d~ 475 (601)
T PRK03659 466 EAIVITCNEP 475 (601)
T ss_pred CEEEEEeCCH
Confidence 9999997753
No 269
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.72 E-value=0.0064 Score=63.62 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=52.9
Q ss_pred cEEEEECCChh-HHHHHHHHHHc---CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
|||+|||.|.. .-.+...|++. .++.+|+++|+|+++.+.+.+- ...++++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 22233444432 2567999999999987764320 01111111 113578899999999
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999998653
No 270
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.71 E-value=0.012 Score=58.54 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=28.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~ 38 (480)
+||||||+|.+|..++..+.+. ++.++. ++|+|++.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es 41 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPES 41 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhh
Confidence 5799999999999988777763 467765 67898864
No 271
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.71 E-value=0.0087 Score=61.70 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC-CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCC-CEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~a 79 (480)
.+++|||+|..+......++...+ -.+|.+|++++++.+++.+... ...... .+..+++.++++++|
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~-----------~~~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA-----------ETYPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------HhcCCCceEEEeCCHHHHHcCC
Confidence 469999999999999998887433 3589999999999888764210 000001 266789999999999
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+++
T Consensus 225 DIVvtaT~s 233 (379)
T PRK06199 225 DIVTYCNSG 233 (379)
T ss_pred CEEEEccCC
Confidence 999999764
No 272
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.71 E-value=0.008 Score=59.94 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=75.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....++..|.++|.+|.+||+.....+...+ .+...+.
T Consensus 2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~ 49 (296)
T PRK15461 2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA 49 (296)
T ss_pred CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence 3799999865 7899999999999999999986543322111 1244567
Q ss_pred CHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+. .+..- .+.+...+++..+|+|+..+... +.+.+.|+.|..
T Consensus 50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld 118 (296)
T PRK15461 50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD 118 (296)
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 88899999999999998874 33221 12344455556699999888764 234456777754
No 273
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.71 E-value=0.008 Score=62.70 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=73.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|++ +-+..+++.|...|.+|.+|||..... ....
T Consensus 148 ~L~gktvGIiG~G----------~IG~~vA~~~~~fGm~V~~~d~~~~~~--------------------------~~~~ 191 (409)
T PRK11790 148 EVRGKTLGIVGYG----------HIGTQLSVLAESLGMRVYFYDIEDKLP--------------------------LGNA 191 (409)
T ss_pred cCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCCcccc--------------------------cCCc
Confidence 4689999999984 568899999999999999999963210 0123
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+..++++.++.+|+|+++.+..+ -++ ++- +..+.|++.+++|.+-+ ++|.+.+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~~vde~aL 249 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGA-EELALMKPGAILINASRGTVVDIDAL 249 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCH-HHHhcCCCCeEEEECCCCcccCHHHH
Confidence 455689999999999999988743 333 344 45678888889999864 7776544
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.71 E-value=0.017 Score=61.66 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=65.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEE-EecCH------
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLF-FSTDV------ 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~-~t~d~------ 72 (480)
.||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+..+ .+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence 3799999999999887777776 8899999999999998876332211 11000000 000011 11121
Q ss_pred --HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 73 --EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 --~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.++++|++|.|+..|... .+ ..+.++....++++.+|++.+.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEEEEcc
Confidence 12235799999998765321 11 1123556667778888876553
No 275
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.71 E-value=0.013 Score=58.99 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++++|+|+. .-...+++.|..-|.+|.+|||.-.++ ...++ +
T Consensus 142 ~~l~gktvGIiG~G----------rIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~----------------------~ 188 (324)
T COG1052 142 FDLRGKTLGIIGLG----------RIGQAVARRLKGFGMKVLYYDRSPNPE-AEKEL----------------------G 188 (324)
T ss_pred cCCCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCCChH-HHhhc----------------------C
Confidence 46789999999974 567999999999999999999987632 22221 2
Q ss_pred eEEecCHHhhcccccEEEEEecC-cc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEW-DE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~-~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+|.+ +++.++.+|.|++..+- ++ +.=++-+ ..+.|++..++|.+-+ ++|.+.+-
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~-~l~~mk~ga~lVNtaRG~~VDe~ALi 247 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLTPETRHLINAE-ELAKMKPGAILVNTARGGLVDEQALI 247 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH-HHHhCCCCeEEEECCCccccCHHHHH
Confidence 55665 99999999999998876 33 3335554 4568888888998865 77765443
No 276
>PLN02306 hydroxypyruvate reductase
Probab=96.70 E-value=0.0097 Score=61.48 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=75.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEEcCCCChHHHH--HhhhccccCCCCCCCCCCCCcccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL-GDKARLSIYDPQVTEDQIQ--RDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+.+++|+|+|+. +-...+++.|. .-|++|.+|||....+... ..++ ..+. ......
T Consensus 162 ~L~gktvGIiG~G----------~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~-------~~~~~~ 221 (386)
T PLN02306 162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLK-------ANGEQP 221 (386)
T ss_pred CCCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccc-------cccccc
Confidence 4689999999984 46788999985 7899999999987532110 0110 0000 000000
Q ss_pred cceEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..+.+..++++.++.+|+|+++.+... -++ ++- +..+.|++.+++|++-+ ++|.+.+-
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~-~~l~~MK~ga~lIN~aRG~lVDe~AL~ 283 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINK-ERLALMKKEAVLVNASRGPVIDEVALV 283 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 112334689999999999999888743 223 454 45578998889999865 77865543
No 277
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.70 E-value=0.054 Score=52.28 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +..++++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG--~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~ 189 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKG--G------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD 189 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence 35678888788899999999996632 1 11 357899999999999999888887654 4445554
Q ss_pred cCCCCceEE-eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 144 NSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.++ .++.+ .|+|-- .||.. .+..+|. ...+++..+++-+|-++..
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence 332 23333 356642 23221 1233332 2346888899888888875
No 278
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.68 E-value=0.0043 Score=56.48 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=65.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCC----h-----HHHHhhhcCCCEEEecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPG----L-----DGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~----l-----~~~~~~~~~~~l~~t~d~ 72 (480)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+++........+.. . +..... .........+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYY--EHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH--HHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhh--HHHHHhHHHH
Confidence 5899999999999999999887 9999999999998888775322111000 0 000000 0000011234
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.++.+|+||.+.--+... .| .-+.++..+.++++.+|++-|.
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence 55678899999876543221 22 1233455566788999988653
No 279
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.04 Score=58.23 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 5799999999999999999998 99999999985
No 280
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.0072 Score=62.53 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHHHHH--HHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|..+.+--. .+.+ ..++.++.++|+++++.+.+..- .+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--------~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--------AKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEecCHHHHh
Confidence 58999999999987543 2222 13678999999999987743320 11222221 123478899999999
Q ss_pred ccCcEEEEecc
Q 011641 77 SEADIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999974
No 281
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.64 E-value=0.013 Score=58.61 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=74.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.....+.... .+...+++
T Consensus 2 ~Ig~IGlG----------~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLG----------KMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS 49 (299)
T ss_pred EEEEEccc----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999974 47899999999999999999986433221111 13455678
Q ss_pred HHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 406 AYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
+++.+++ +|+|+++++.+ ..+++ ++.+...+++..+|||+.+.-... .+++.|+.|..
T Consensus 50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 8887766 69999999998 44442 345666676666999998876532 33456887765
No 282
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.64 E-value=0.0088 Score=58.96 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=44.1
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|..+ |..|+.+++.. .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999998631 13445688999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
No 283
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.63 E-value=0.0075 Score=60.77 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=72.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||...... .
T Consensus 145 ~l~gktvgIiG~G----------~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~ 186 (317)
T PRK06487 145 ELEGKTLGLLGHG----------ELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P 186 (317)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence 3579999999974 5778999999999999999998643210 1
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
. ..++++.++.+|+|+++.+.. +-++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~-~~~~~mk~ga~lIN~aRG~vVde~AL~ 244 (317)
T PRK06487 187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIGA-RELALMKPGALLINTARGGLVDEQALA 244 (317)
T ss_pred c-ccCHHHHHHhCCEEEECCCCChHHhcCcCH-HHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1 137899999999999998873 3344 454 45678898889999865 88865443
No 284
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.62 E-value=0.01 Score=59.01 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+...++
T Consensus 3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 50 (296)
T PRK11559 3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS 50 (296)
T ss_pred ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999754 6788999999999999999986543221111 1245567
Q ss_pred CHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCC
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~ 451 (480)
++.++++++|+|+++++-+. .+..- .+.+...+++..+|+|+..+..
T Consensus 51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 88999999999999987543 22210 1234555666679999988775
No 285
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.62 E-value=0.015 Score=58.03 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=75.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-...+...+ .+.....+
T Consensus 2 ~Ig~IGlG----------~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLG----------RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS 49 (301)
T ss_pred EEEEEccc----------HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 79999974 47899999999999999999997443222111 23456677
Q ss_pred HHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 406 AYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
+.+.++. +|+|++++..+ ..++. ++.+...+++..+|||+.+.... +.+++.|+.|...
T Consensus 50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 8877765 69999999887 33332 34566666666699999887653 3345668888654
No 286
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.62 E-value=0.007 Score=60.79 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=72.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||......- + ...
T Consensus 133 ~l~g~tvgIvG~G----------~IG~~vA~~l~afG~~V~~~~~~~~~~~~---~---------------------~~~ 178 (312)
T PRK15469 133 HREDFTIGILGAG----------VLGSKVAQSLQTWGFPLRCWSRSRKSWPG---V---------------------QSF 178 (312)
T ss_pred CcCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCCCCCCCC---c---------------------eee
Confidence 4678999999984 57789999999999999999985432110 0 001
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.-..+++++++++|+|+++.+..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~vVde~aL 236 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIIN-QQLLEQLPDGAYLLNLARGVHVVEDDL 236 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhH-HHHHhcCCCCcEEEECCCccccCHHHH
Confidence 113578999999999999988754 223 33 456778988889999865 7776544
No 287
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.58 E-value=0.015 Score=60.87 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|||+|.+|.++|..|.+. |++|+++|++++...... .+. . ....+.+....++|+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~~~~~~-------------~~~----~--~~~~~~~~~~~~~dl 62 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEALQSCP-------------YIH----E--RYLENAEEFPEQVDL 62 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccccchhH-------------HHh----h--hhcCCcHHHhcCCCE
Confidence 5799999999999999999998 899999998765432110 000 0 011222333467998
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHH-hh--CCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIA-DV--SKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~-~~--l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
||.+.+.+. +...++.+.+ .++ .. .....+|-+..|..-.||.. +..+|+..+
T Consensus 63 vV~s~gi~~-----------~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 63 VVRSPGIKK-----------EHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred EEECCCCCC-----------CcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 888865442 1223333332 111 11 11345676777776666655 677787643
No 288
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.57 E-value=0.014 Score=54.28 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=51.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecC---HHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d---~~~a 75 (480)
+++.|+|. |.+|..++..|++. |++|++++|+.++.+.+.+.... ..+ ..+.. ..+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~--~~~----------~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA--RFG----------EGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh--hcC----------CcEEEeeCCCHHHHHHH
Confidence 57999995 99999999999998 89999999999988776542100 000 01111 122 2356
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++++|+||.++|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999987644
No 289
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.57 E-value=0.063 Score=51.90 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +..+++.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~ 187 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED 187 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence 35678888788899999999996632 1 11 357899999999999999888887654 3444544
Q ss_pred cCCCCceEE-eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 144 NSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.++ .++.+ .|+|-- .||.. .. ..++- ...+++..+++-+|-++..
T Consensus 188 l~R-~DvgVsS~HPaa-VPgt~-----~q-~Yi~e---gyAtEEqI~klveL~~sa~ 233 (340)
T TIGR01723 188 LGR-EDLNVTSYHPGC-VPEMK-----GQ-VYIAE---GYASEEAVNKLYELGKKAR 233 (340)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-----Cc-eEeec---ccCCHHHHHHHHHHHHHhC
Confidence 332 23333 356642 34332 11 12222 2336888999888888875
No 290
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.56 E-value=0.013 Score=57.60 Aligned_cols=104 Identities=21% Similarity=0.372 Sum_probs=72.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE--Ee--cCHHHhhcc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF--FS--TDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~--~t--~d~~~a~~~ 78 (480)
||+|||.|.+|+--|....-. |-+|+..|+|.+++.++..- . .+++. .+ .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence 799999999999888776665 89999999999988776531 0 12322 11 246677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|++|=+|=.|-.. .| +-+.+++.+.++++.+||+-.-=..|+.+.
T Consensus 232 aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVAiDqGGc~Et 277 (371)
T COG0686 232 ADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVAIDQGGCFET 277 (371)
T ss_pred ccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEEEcCCCceec
Confidence 99999888666432 23 235677788899999998754323344333
No 291
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.56 E-value=0.016 Score=57.97 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHH---HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI---NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v---~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+|+|-| .|++|..+...|.++ ||.|.+.=|+++.- +.|.+-. +..+.+. +....+.-..+..++++
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~------~a~~~l~-l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLE------GAKERLK-LFKADLLDEGSFDKAID 77 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcc------cCcccce-EEeccccccchHHHHHh
Confidence 7899999 599999999999999 99999999988752 2233210 0000000 00123444567788999
Q ss_pred cCcEEEEeccCCCCC
Q 011641 78 EADIVFVSVNTPTKT 92 (480)
Q Consensus 78 ~aDvVii~Vptp~~~ 92 (480)
+||.||=+ -+|.+.
T Consensus 78 gcdgVfH~-Asp~~~ 91 (327)
T KOG1502|consen 78 GCDGVFHT-ASPVDF 91 (327)
T ss_pred CCCEEEEe-CccCCC
Confidence 99988744 355544
No 292
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.56 E-value=0.055 Score=50.85 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.||...+..|.+. |++|++++.+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 5799999999999999999998 89999998653
No 293
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.55 E-value=0.029 Score=49.41 Aligned_cols=79 Identities=18% Similarity=0.048 Sum_probs=60.5
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|-+ +.-..+++..|.++|++|.+.+-..
T Consensus 22 ~~~~~~gk~v~VvGrs---------~~vG~pla~lL~~~gatV~~~~~~t------------------------------ 62 (140)
T cd05212 22 EGVRLDGKKVLVVGRS---------GIVGAPLQCLLQRDGATVYSCDWKT------------------------------ 62 (140)
T ss_pred cCCCCCCCEEEEECCC---------chHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 4457899999999954 3778899999999999999977422
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+++++||.||.+|..+.+ ++.+. +++..+|+|.-
T Consensus 63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~----ikpGa~Vidvg 100 (140)
T cd05212 63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEW----IKPGATVINCS 100 (140)
T ss_pred ------cCHHHHHhhCCEEEEecCCCCc--cCHHH----cCCCCEEEEcC
Confidence 1457789999999999999965 44433 34456777764
No 294
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.54 E-value=0.016 Score=61.62 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
-.+|+++||+ .....++..|.++|++|.+||...+..+...+.. ...+. ..+..+
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~--------------~~~Ga-~~~~~a 60 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA--------------KKEGN-LPLYGF 60 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh--------------hhcCC-cccccC
Confidence 3579999996 4889999999999999999998655433221100 00000 113356
Q ss_pred cCHHhhccc---ccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecC
Q 011641 404 WDAYEATKD---AHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGK 467 (480)
Q Consensus 404 ~~~~~a~~~---ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
.++.++++. +|+|+++...++--+--++.+...+.+..+|||+.+.... +.+++.|+.|.+.|.
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapV 133 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGV 133 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence 788888876 9999999988763321224566777666699999999743 345567999988865
No 295
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.52 E-value=0.0059 Score=66.45 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=51.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHH-hhccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (480)
+|.|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+.. +..-++. +++ -++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~--------------L~~a~i~~a 482 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEI--------------MQLAHLDCA 482 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHH--------------HHhcCcccc
Confidence 588999999999999999998 9999999999999999886332221 1111111 111 25689
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++++++
T Consensus 483 ~~viv~~~~ 491 (558)
T PRK10669 483 RWLLLTIPN 491 (558)
T ss_pred CEEEEEcCC
Confidence 999999764
No 296
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.49 E-value=0.029 Score=56.01 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=76.1
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
....+.++||+|+|..- -+..++..|.+.|++|.+||...........++ .
T Consensus 146 ~~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~---------------- 196 (296)
T PRK08306 146 TPITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKSAHLARITEMG---L---------------- 196 (296)
T ss_pred CCCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C----------------
Confidence 33456789999999743 779999999999999999999854432222221 0
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC---ChhhhhhcCcEEEE
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV---DANKLREIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~---~~~~~~~~g~~y~~ 464 (480)
.....+++.+.++++|.||..+++.. ++ ++..+.|++..+|||.-.-- +-+..++.|....+
T Consensus 197 -~~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 197 -SPFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred -eeecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 01112456778899999999887643 22 34566788778999986532 22344567776654
No 297
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.46 E-value=0.021 Score=57.02 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=75.0
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.++|.+|.+||......+..... +.....+
T Consensus 2 ~Ig~IGlG----------~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLG----------RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN 49 (298)
T ss_pred EEEEEcch----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence 69999984 478899999999999999999865443222211 1112234
Q ss_pred HHh---hcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEecCC
Q 011641 406 AYE---ATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIGKP 468 (480)
Q Consensus 406 ~~~---a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG~~ 468 (480)
+.+ .++.+|+|+++++.+..++. .+.+...+++..+|||+.+..... .+++.|+.|...+-.
T Consensus 50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence 444 45678999999999855542 356666666556999999986432 334668888777643
No 298
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.44 E-value=0.0091 Score=60.64 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=43.2
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|+| .|++|.-+...|+++ +| ++..+.++.+.-+.+.-+ + ..+.+.......+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~~~-------g----------~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELSFK-------G----------KELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeeeeC-------C----------ceeEEeeCCHHHH
Confidence 68999999 599999999999986 55 446665543321111100 0 1233322111235
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||+|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 789999999774
No 299
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.44 E-value=0.012 Score=59.30 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+. +-...+++.|...|.+|.+||+..... . ...
T Consensus 145 l~gktvgIiG~G----------~IG~~va~~l~~fg~~V~~~~~~~~~~-~--------------------------~~~ 187 (314)
T PRK06932 145 VRGSTLGVFGKG----------CLGTEVGRLAQALGMKVLYAEHKGASV-C--------------------------REG 187 (314)
T ss_pred cCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCcccc-c--------------------------ccc
Confidence 589999999974 567899999999999999999853211 0 001
Q ss_pred EecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..++++.++.+|+|+++.+..+ -++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 188 -~~~l~ell~~sDiv~l~~Plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~~Vde~AL~ 244 (314)
T PRK06932 188 -YTPFEEVLKQADIVTLHCPLTETTQNLINA-ETLALMKPTAFLINTGRGPLVDEQALL 244 (314)
T ss_pred -cCCHHHHHHhCCEEEEcCCCChHHhcccCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 2478999999999999988633 333 454 45678898889999855 77765443
No 300
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.43 E-value=0.018 Score=55.44 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=55.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH---cCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.||.|+|.|.+|.+.|..+..++-..++.++|.++++...-. ++..++. ...++..+.|+.. -++
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~-----------~~~~V~~~~Dy~~-sa~ 88 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFL-----------STPNVVASKDYSV-SAN 88 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccc-----------cCCceEecCcccc-cCC
Confidence 489999999999999988876633468999999998654311 1112221 1246777778764 789
Q ss_pred CcEEEEeccCCCC
Q 011641 79 ADIVFVSVNTPTK 91 (480)
Q Consensus 79 aDvVii~Vptp~~ 91 (480)
++++|++......
T Consensus 89 S~lvIiTAGarq~ 101 (332)
T KOG1495|consen 89 SKLVIITAGARQS 101 (332)
T ss_pred CcEEEEecCCCCC
Confidence 9999999876543
No 301
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.43 E-value=0.015 Score=57.77 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=70.1
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....++..|.+.|.+|.+||+....-+.... .+...+.+
T Consensus 1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~ 48 (291)
T TIGR01505 1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET 48 (291)
T ss_pred CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence 589999854 7899999999999999999986533222111 12334567
Q ss_pred HHhhcccccEEEEEecCcc-cccc--cHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTL--DYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~--~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
+.++++++|+|+++++-+. .+.. ....+...+++..+|+|+.+..... .+++.|+.|..
T Consensus 49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8899999999999987642 2221 1122445556667899988766431 23344665544
No 302
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.39 E-value=0.02 Score=51.65 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=49.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-+ .+|.|+|..|.++ |..|+.++... .++++.++.||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~T---------------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSKT---------------------------------KNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TTS---------------------------------SSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCCC---------------------------------Ccccceeeecc
Confidence 589999976 6999999999998 89999987631 34455688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.+++.|..- + ...++++.+||+.++.
T Consensus 82 IVVsa~G~~~~i------------------~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 82 IVVSAVGKPNLI------------------K--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--CE
T ss_pred EEeeeecccccc------------------c--cccccCCcEEEecCCc
Confidence 999999876321 0 2457889999875543
No 303
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.36 E-value=0.023 Score=55.93 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=61.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|+|+|.+ +.-..+++..|.++|++|.++....
T Consensus 152 ~~i~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~t------------------------------ 192 (284)
T PRK14179 152 YNVELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSRT------------------------------ 192 (284)
T ss_pred hCCCCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 3446799999999963 3567899999999999999983211
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.|-.-+| +++..+|||.-
T Consensus 193 ------~~l~~~~~~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 193 ------RNLAEVARKADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 256778899999999999999854332 45557999975
No 304
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.36 E-value=0.028 Score=53.39 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=29.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 66 566789887
No 305
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.31 E-value=0.031 Score=54.83 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=55.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh--hcCCCEEE-ecCHHH---h
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFF-STDVEK---H 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~--~~~~~l~~-t~d~~~---a 75 (480)
.||++||.|.+-++.-.....++++..|.++|++++.++.-++ ++.. -...++++ +.|..+ .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence 3899999999998655444344345679999999998765432 1110 01234544 334322 2
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++|+|+++---.. +-..-..+++.+.+.+++|++|+.+|.-
T Consensus 190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 568899999953321 1123378899999999999999998754
No 306
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.30 E-value=0.017 Score=63.61 Aligned_cols=72 Identities=10% Similarity=0.245 Sum_probs=53.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|-|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+++ +..-.+.+++ .-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES-------------AGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh-------------cCCCcC
Confidence 4689999999999999999998 8999999999999999987433332 1111111110 125689
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++|+++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999764
No 307
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.29 E-value=0.0086 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
||+|||+|.+|..+|..|++. |. +++++|.+.-..+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~ 40 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLN 40 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchh
Confidence 689999999999999999998 76 5999999863333344
No 308
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.27 E-value=0.02 Score=60.52 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=38.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 36899999999999999999998 9999999999999988875
No 309
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.077 Score=56.79 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=47.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|..|.+.+..|... |++|+++|.+++..+.+.+.... +.......+.++++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888887 99999999887766555431111 1111112234678899
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.+-.-|
T Consensus 74 VV~SpGi~ 81 (488)
T PRK03369 74 VVTSPGFR 81 (488)
T ss_pred EEECCCCC
Confidence 88875544
No 310
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.25 E-value=0.042 Score=52.57 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=67.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEEC----------CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|. |.+.+..+++..-.+.. . .+ .+..
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~- 97 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI- 97 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence 6899999999999999999998 89998 5676 55555554432111100 0 00 0111
Q ss_pred CHHHh-hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKH-VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a-~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.++. -.+||+++-|.++..-. ...+.++ + -.+|+ ++...|-| ....+.|.+.+
T Consensus 98 ~~~~i~~~~~Dvlip~a~~~~i~--------------~~~~~~l----~-a~~I~-egAN~~~t-~~a~~~L~~rG---- 152 (227)
T cd01076 98 TNEELLELDCDILIPAALENQIT--------------ADNADRI----K-AKIIV-EAANGPTT-PEADEILHERG---- 152 (227)
T ss_pred CCccceeecccEEEecCccCccC--------------HHHHhhc----e-eeEEE-eCCCCCCC-HHHHHHHHHCC----
Confidence 11221 13899999997643211 1122222 2 33444 44444444 55667777764
Q ss_pred eEEeeCCcccc
Q 011641 150 FQILSNPEFLA 160 (480)
Q Consensus 150 ~~v~~~Pe~~~ 160 (480)
+.+.|.++.
T Consensus 153 --i~~~PD~~a 161 (227)
T cd01076 153 --VLVVPDILA 161 (227)
T ss_pred --CEEEChHHh
Confidence 567787753
No 311
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.064 Score=56.92 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|..|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5899999999999999999998 99999999865
No 312
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.22 E-value=0.021 Score=56.78 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=71.8
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||.....+.. .. .+...+.+
T Consensus 2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s 48 (292)
T PRK15059 2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET 48 (292)
T ss_pred eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence 689999854 7789999999999999999865322221 11 13445678
Q ss_pred HHhhcccccEEEEEecCcc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTL--DYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~--~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
+.++.+++|.|++++..+. .++. ....+...+.+..+|||+..+-.. +.+++.|..|..
T Consensus 49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8898999999999999873 2221 111233334445699999887754 344566777754
No 313
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.19 E-value=0.11 Score=51.82 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=66.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||+|+|.+|.-+|.++..- |..|++||.-.-.- ...+ -++.+. +.+|++..||+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~-~~~a-------------------~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMA-LAEA-------------------FGVQLV-SLEEILPKADF 203 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchH-HHHh-------------------ccceee-eHHHHHhhcCE
Confidence 4689999999999999998876 78899988632111 1111 123433 46788999998
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|-+=+| . .|+++.+.+ ..-...+++|.-||+.|-...=.+..+.+.++.
T Consensus 204 itlH~P--L---------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 204 ITLHVP--L---------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEccC--C---------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 866655 3 233333322 223345788988988764433334456566654
No 314
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.1 Score=49.99 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=100.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHH-HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|++||.|+|...++..+...+ ...+++.+-.+...... ++.- +--++.++ .++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~------------------g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL------------------GVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC------------------Cceeeech-HHHHhh
Confidence 79999999999999999888761 11234443332111111 2211 11233344 677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHHHHHhcCCCCceEE-eeCC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQI-LSNP 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v-~~~P 156 (480)
+|++++||. |. .+.+++.++.+....+++|+- +--|. ...+...+.... .-+.+ .-.|
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNtp 121 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNTP 121 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCCh
Confidence 999999987 42 246677777776667777762 22333 333444443111 01111 2345
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+..++|... +..|+. ...+..+.+++++..++. ...+...----.+.+..- =-+....++.-++.-
T Consensus 122 ~~v~eg~sv--------~~~g~~---~~~~D~~l~~~ll~~vG~--~~evpE~~iDavTgLsGS-gPAy~f~~ieaLadG 187 (267)
T KOG3124|consen 122 SVVGEGASV--------YAIGCH---ATNEDLELVEELLSAVGL--CEEVPEKCIDAVTGLSGS-GPAYVFVAIEALADG 187 (267)
T ss_pred hhhhcCcEE--------EeeCCC---cchhhHHHHHHHHHhcCc--ceeCcHHhhhHHhhccCC-cHHHHHHHHHHHhcc
Confidence 556665431 222322 234556888889988752 221110000001111110 112223344455556
Q ss_pred HHHhCCCHHHHHHHhc
Q 011641 237 CEATGANVSQVAFAVG 252 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~ 252 (480)
.-++|+..+.-.+...
T Consensus 188 gVkmGlPr~lA~~laa 203 (267)
T KOG3124|consen 188 GVKMGLPRQLAYRLAA 203 (267)
T ss_pred ccccCCCHHHHHHHHH
Confidence 6677777665555443
No 315
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.18 E-value=0.018 Score=58.56 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=32.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.+|.|||+|.+|..+|..|+.. |+ +++++|.+.-....|+
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~ 65 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQ 65 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccC
Confidence 4799999999999999999998 76 8999999863333333
No 316
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.021 Score=56.23 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=55.0
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-|. +|.|+|..|..+ |..|++++.. |.++++.++.||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999888 999999999988 8999998752 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.- +. ...++++++||+.+
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG 231 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG 231 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence 99999976531 11 15678899998754
No 317
>PLN02256 arogenate dehydrogenase
Probab=96.16 E-value=0.022 Score=57.06 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=74.7
Q ss_pred HHhHHhHHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccc
Q 011641 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNK 380 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~ 380 (480)
.+...||-..-.++.+++. ..+..+|+|+|++. .+-.++..|.+.|.+|.+||+.-. .+....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~---- 77 (304)
T PLN02256 14 AIDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL---- 77 (304)
T ss_pred cccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc----
Confidence 3444455444455666654 33677999999754 577899999999999999998742 2222221
Q ss_pred cCCCCCCCCCCCCcccccceEEecCHHhhc-ccccEEEEEecCcccccccHHHH-HHhcCCCCEEEEcCCC
Q 011641 381 FDWDHPLHLQPMSPTMVKQVSVVWDAYEAT-KDAHGVCILTEWDEFKTLDYQRI-YDNMQKPAFVFDGRNV 449 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ad~vvi~t~~~~~~~~~~~~~-~~~~~~~~~viD~~~~ 449 (480)
++....+.++.+ .++|+|+++|+-..+.++ ..++ ...+++..+|+|.-.+
T Consensus 78 ------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~v-l~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 78 ------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAV-LRSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred ------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHH-HHhhhhhccCCCCEEEecCCc
Confidence 233456777765 479999999997765442 1233 2334555699999884
No 318
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.021 Score=56.28 Aligned_cols=71 Identities=30% Similarity=0.401 Sum_probs=53.7
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-| .+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999988 8999988532 123445688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG 229 (285)
T PRK14191 203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG 229 (285)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence 999999876321 1 23458899988743
No 319
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.09 E-value=0.032 Score=51.60 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=58.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cC----HHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD----VEK 74 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (480)
++|+||| ...+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-..| .+ +.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 4799999 578999999999998 89999999764322 111100 0 00111 12 556
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
.++.||+||.+++.|.-. .. ...+++|++||+.++.
T Consensus 123 ~~~~ADIVIsAvG~~~~~--------i~-----------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK--------VP-----------TELLKDGAICINFASI 158 (197)
T ss_pred HhhhCCEEEEccCCCCCc--------cC-----------HHHcCCCcEEEEcCCC
Confidence 689999999999976310 01 2456789999875543
No 320
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.07 E-value=0.19 Score=50.45 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCCh-HHHHHhhhccccCCCCCC
Q 011641 310 FVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTE-DQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~ 387 (480)
.++.....+ +.+.+.+|+|+|.+ ..+..+++.|...| .+|.++|+.... .++...++
T Consensus 165 Av~~a~~~~-~~l~~~~V~ViGaG----------~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------- 223 (311)
T cd05213 165 AVELAEKIF-GNLKGKKVLVIGAG----------EMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------- 223 (311)
T ss_pred HHHHHHHHh-CCccCCEEEEECcH----------HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC----------
Confidence 344444333 34688999999963 46788889998876 679999986543 23333322
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC--CCChhhhhhcCcEEEEe
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLREIGFIVYSI 465 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~~~g~~y~~i 465 (480)
......+++++++.++|+||.+|..+++.++..+.+.....++.+|+|..+ -++++-..-.|+.++-|
T Consensus 224 ----------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v 293 (311)
T cd05213 224 ----------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI 293 (311)
T ss_pred ----------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence 011112456788899999999999998733222222222224679999874 24444322235655544
No 321
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.07 E-value=0.045 Score=57.33 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec--CHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (480)
+|||+|+|+|.-|.++|..|.+. |++|+++|.++.. +..... +..++ ++.+.. ...+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~~------------~i~~~~g~~~~~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLLE------------GIEVELGSHDDEDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhcc------------CceeecCccchhcccc
Confidence 47999999999999999999998 9999999987654 111000 00011 111111 11133678
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhC-CCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVS-KSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+|+.+=.-| ++...++.+.+ ++.-.. .+..+|.+..|..-.||-. +..++.+.+
T Consensus 70 ~d~vV~SPGi~-----------~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 70 FDLVVKSPGIP-----------PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCEEEECCCCC-----------CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 99998773333 33334444432 112222 2444777777776655544 567777654
No 322
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.1 Score=55.68 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|..|..+|..|+++ |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999988 99999999654
No 323
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.04 E-value=0.048 Score=49.13 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++.+ +..+-++++++|.|+|-+- .-..+|+..|.++|+.|.+.+....
T Consensus 21 ~aii~lL-~~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T~------------------- 71 (160)
T PF02882_consen 21 LAIIELL-EYYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKTK------------------- 71 (160)
T ss_dssp HHHHHHH-HHTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTSS-------------------
T ss_pred HHHHHHH-HhcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCCC-------------------
Confidence 3344433 3344468999999999543 4578999999999999999776542
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
++++.++.||.||.++..+.|-.-+ ..++.++|||..--+.
T Consensus 72 -----------------~l~~~~~~ADIVVsa~G~~~~i~~~------~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 72 -----------------NLQEITRRADIVVSAVGKPNLIKAD------WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -----------------SHHHHHTTSSEEEE-SSSTT-B-GG------GS-TTEEEEE--CEEE
T ss_pred -----------------cccceeeeccEEeeeeccccccccc------cccCCcEEEecCCccc
Confidence 3566689999999999999885433 2345579999865444
No 324
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.04 E-value=0.028 Score=57.06 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=34.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||||.|.|+ |++|..++..|.++ .|++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence 789999996 99999999999875 169999999987655444
No 325
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.01 E-value=0.037 Score=56.56 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=48.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCC-ChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
|+||+|+| .|++|..+...|.++ +..+++++..+++...+......++.+. ++.... ..+.+. .++++ +.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEV-----ADMEVVSTDPEA-VD 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCcccccccccccccccccc-----cceEEEeCCHHH-hc
Confidence 36899998 899999999999976 5679999866654432211111111100 000000 113332 34444 68
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||.|+|.
T Consensus 76 ~~DvVf~a~p~ 86 (349)
T PRK08664 76 DVDIVFSALPS 86 (349)
T ss_pred CCCEEEEeCCh
Confidence 99999999874
No 326
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.069 Score=56.93 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
+||.|+|+|..|.++|..|.++ |++|+++|++......
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 6799999999999999999998 8999999987665433
No 327
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.99 E-value=0.046 Score=48.19 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=48.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+| ...+|.++|..|.++ |..|+.++.+ |.++++.+++||
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~AD 73 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDAD 73 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 3677777 466777777777776 7777777642 124566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+|+.+++.+.. .+ ...+++|++|++.
T Consensus 74 IVvsAtg~~~~---------i~-----------~~~ikpGa~Vidv 99 (140)
T cd05212 74 VVVVGSPKPEK---------VP-----------TEWIKPGATVINC 99 (140)
T ss_pred EEEEecCCCCc---------cC-----------HHHcCCCCEEEEc
Confidence 99999886521 11 2457899998853
No 328
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.98 E-value=0.044 Score=58.11 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=77.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
.|+|+|+. .....|++.|.++|++|.+||......+...... . .+ ..+....+
T Consensus 1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--~-------------~g--~~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--A-------------KG--KKIVGAYS 53 (467)
T ss_pred CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--c-------------CC--CCceecCC
Confidence 37888884 5889999999999999999998654332211100 0 00 11334456
Q ss_pred HHhhc---ccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCC
Q 011641 406 AYEAT---KDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 406 ~~~a~---~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~ 470 (480)
+.+.+ +.+|+|++++..++.-+--.+.+...+.+..+|||+.|.... ..+.+.|+.|.+.|...-
T Consensus 54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 66644 568999999888543222235666666656699999997643 344567999988876443
No 329
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.49 Score=46.95 Aligned_cols=228 Identities=12% Similarity=0.159 Sum_probs=132.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH----HHHHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR----INAWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~----v~~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.++-++|+|.+..-+|.-+..++ ..++=.+.+-..+ .++++.+.. ++-.+-.+.-+ ..+|+.. +-.+++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~q-l~l~~q~eahr-~leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQ-LYLQGQGEAHR-QLEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCe-EEEEeccHHHH-hhcCceehhHHHhhHH
Confidence 467999999999999999999873 4566667764333 333443321 22222122111 1234443 345677
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhCCC-CcEEEEecCCCcchHHHHHHHHHhcCCCCceE
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-+.+|+|||+. .-.+++++|. +.|+. .++|.+++|+..+. -+...+.+.+ .+..
T Consensus 81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE 141 (431)
T ss_pred HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence 7777889999999863 2355667663 23333 45666777775442 2333333332 2333
Q ss_pred Eee-----CCccc----cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhh------
Q 011641 152 ILS-----NPEFL----AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK------ 216 (480)
Q Consensus 152 v~~-----~Pe~~----~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|++ +-.+. .|-++..... ..|+.+|+... +....+.+..++...+. ......++..||.--
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 332 11111 1222221111 12577886532 34567889999998753 344556777777421
Q ss_pred --h----------------------------hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 217 --L----------------------------AANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 217 --l----------------------------~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+ +.-+...-+...+-|++++..++|+..-.+++.++.+
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 0 1122444556788999999999999999999999876
No 330
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.91 E-value=0.037 Score=55.84 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=54.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|.+|..++..+... ++.+|++ .|.+++....+... +...+. ...+...+.....+....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 69999999999999998764 4777665 67777755444431 112211 11100000112346677788998899999
Q ss_pred EEEeccCCC
Q 011641 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999977543
No 331
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.91 E-value=0.047 Score=57.95 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecCHHHhhc
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|.+.. ..+.|.+. ++++ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 57999999999999 79999988 999999998643 22233321 1222 1222 3366
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|. +...++.+.+ ++ ...+++..+|.+..|..-.||.. +..+|+..+
T Consensus 66 ~~d~vv~spgi~~-----------~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 66 DADVVVYSSAIPD-----------DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 8998887643332 2222332211 12 22333346777777776666554 677887653
No 332
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.91 E-value=0.046 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++++|+|.|.+|.+++..|.+.+ +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 58999999999999999999862 467777765
No 333
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.038 Score=54.69 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=42.2
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|.++ |..|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12334468999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998644
No 334
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.05 Score=54.05 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=60.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|+|+|=+. ....+++..|.++|++|.+++...
T Consensus 152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------ 192 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------ 192 (296)
T ss_pred hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence 33467999999999332 567899999999999999986321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
.++.++++.||+|+.++..+.+-+-+| +++..+|||.--
T Consensus 193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi 231 (296)
T PRK14188 193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI 231 (296)
T ss_pred ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence 135677899999999999998644222 455668999753
No 335
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.87 E-value=0.035 Score=55.62 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.7
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++||+||| .||+|.-+...|.++ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 47999999 699999999999987 44454444
No 336
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.87 E-value=0.056 Score=48.65 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|||.|.+|...+..|.+. |++|++++ ++..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs--p~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVS--PEICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEc--CccCHHHH
Confidence 4799999999999999999998 99999996 34444443
No 337
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.83 E-value=0.032 Score=50.13 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=63.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|- ++-+..++..|..+|.+|.+|.+.-..-+..+..+ . ....+ +. ....+.+...++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~---~-n~~~~---~~-~~l~~~i~~t~d 62 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETR---Q-NPKYL---PG-IKLPENIKATTD 62 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT---S-ETTTS---TT-SBEETTEEEESS
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC---C-CCCCC---CC-cccCcccccccC
Confidence 6888885 46789999999999999999999643222111111 0 00101 11 223356778899
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCC-EEEEcCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPA-FVFDGRNV 449 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~-~viD~~~~ 449 (480)
++++++++|.+++.++-..+++ -.+++....+... +|+=++++
T Consensus 63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999887765 2345554443332 44433444
No 338
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.82 E-value=0.096 Score=53.52 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=33.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+-.++.+...+ ..+|++.|+++++++..++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH
Confidence 6899999999997766555552 3689999999999998876
No 339
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.81 E-value=0.011 Score=55.93 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=44.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+ +....++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999986432224788775 79887655321111 11 111234445443 5
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999885
No 340
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.79 E-value=0.019 Score=45.16 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||.|++|+-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998754
No 341
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.75 E-value=0.031 Score=52.91 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=32.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.+|+|||+|.+|..+|..|++. |. +++++|.+.-..+.|+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~ 69 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLN 69 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEecccccc
Confidence 4799999999999999999998 65 5999999843333344
No 342
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.74 E-value=0.014 Score=58.62 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHHHHH----HHcCCCC-CcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEec
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSV 86 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~V 86 (480)
||..+|..+..+ |++|++.|.|..-++. +..+..+ ..-..+...-..-...+++-+.|..+ ++++|+++-+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999998 9999999999765442 1111000 00000000000000123556677765 89999995543
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcch
Q 011641 87 NTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKT 133 (480)
Q Consensus 87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt 133 (480)
.-|++...+++.+|.+..+++.+. .+.|+.+...
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~ 112 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINV 112 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHH
Confidence 346777889999999999998876 5667776654
No 343
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.74 E-value=0.052 Score=56.77 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=68.6
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc------cccc
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT------MVKQ 399 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 399 (480)
+|+|+|+.| ..+.++..|.+.|.+|.+||+.-..-+. +. ...-|+.. +.-.. ....
T Consensus 2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~~---l~----~g~~~~~e-~~l~~~~~~~~~~g~ 63 (411)
T TIGR03026 2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVDK---LN----KGKSPIYE-PGLDELLAKALAAGR 63 (411)
T ss_pred EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHHH---hh----cCCCCCCC-CCHHHHHHHhhhcCC
Confidence 799999988 6799999999999999999985443221 11 00111100 00000 0122
Q ss_pred eEEecCHHhhcccccEEEEEecCccc--cccc-------HHHHHHhcCCCCEEEEcCCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEF--KTLD-------YQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~--~~~~-------~~~~~~~~~~~~~viD~~~~~ 450 (480)
++...++.++++++|+++++++.+.- ..+| .+.+...+++..+|+|...+.
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 67778888999999999999998742 1122 234555566667899977543
No 344
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.70 E-value=0.049 Score=53.66 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=54.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 689999999999988 8899988631 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- + ...+++|.+||+.+
T Consensus 204 IvI~AvG~p~~i---------~-----------~~~ik~gavVIDvG 230 (284)
T PRK14190 204 ILIVAVGKPKLI---------T-----------ADMVKEGAVVIDVG 230 (284)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 23567899998743
No 345
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.047 Score=53.76 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=54.7
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||-|. +|.|+|..|..+ |..|++++.. |.++.+..++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999888 999999999988 8999998741 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|.-. . ...++++++||+.++
T Consensus 210 Ivv~AvG~p~~i---------~-----------~~~vk~gavVIDvGi 237 (287)
T PRK14176 210 ILVVATGVKHLI---------K-----------ADMVKEGAVIFDVGI 237 (287)
T ss_pred EEEEccCCcccc---------C-----------HHHcCCCcEEEEecc
Confidence 999998866311 0 136788999987543
No 346
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.67 E-value=0.076 Score=51.88 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=66.6
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEE-cCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----RLSIY-DPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|+ ...+..+++.|.+.|. +|.+| |+.-...+.... .++
T Consensus 2 kI~~IG~----------G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~ 49 (266)
T PLN02688 2 RVGFIGA----------GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV 49 (266)
T ss_pred eEEEECC----------cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence 6889886 3578899999999998 89999 774333221111 235
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
....+..++++++|+|+++++-+.+++. +..+...+.+..+||..-.-.+.+.+++
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~~~~~~~v-l~~l~~~~~~~~~iIs~~~g~~~~~l~~ 105 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVKPQVVKDV-LTELRPLLSKDKLLVSVAAGITLADLQE 105 (266)
T ss_pred EEeCChHHHHhcCCEEEEEECcHHHHHH-HHHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence 5677888889999999999965444442 2344444454557787756566666553
No 347
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.66 E-value=0.025 Score=52.32 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=61.7
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc------ccc
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM------VKQ 399 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 399 (480)
||+|+|+.| -.+.++-.|.++|.+|..||..-..-+... .+.-|+.. |.-... ..+
T Consensus 2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-------~g~~p~~E-~~l~~ll~~~~~~~~ 63 (185)
T PF03721_consen 2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEKVEALN-------NGELPIYE-PGLDELLKENVSAGR 63 (185)
T ss_dssp EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHHHHHHH-------TTSSSS-C-TTHHHHHHHHHHTTS
T ss_pred EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHHHHHHh-------hccccccc-cchhhhhcccccccc
Confidence 899999999 679999999999999999998654322221 11123211 000000 145
Q ss_pred eEEecCHHhhcccccEEEEEecCccccc--ccH-------HHHHHhcCCCCEEEEcCCCCCh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKT--LDY-------QRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~--~~~-------~~~~~~~~~~~~viD~~~~~~~ 452 (480)
+.+.++.+++++++|+++|+++-|.-.+ .|. +.+...+++..+|+ .+.-+.+
T Consensus 64 l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 64 LRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp EEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred chhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 7888999999999999999987765432 333 35555556554444 4554443
No 348
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.63 E-value=0.11 Score=49.04 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=45.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec---CHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (480)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .++.+.+. ++++... +.. .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987643 23333321 2232211 222 378
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++++||.|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 8999998854
No 349
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.63 E-value=0.1 Score=53.14 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=44.7
Q ss_pred cEEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEECC----------HHHHHHHHcCCCCCcCCChHHHHhhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDIS----------VSRINAWNSDQLPIYEPGLDGVVKQCR 62 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~----------~~~v~~l~~~~~~~~e~~l~~~~~~~~ 62 (480)
+||+|+|+|.||..++..|.++ +.+.+|. ++|++ .+++..+.+....+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~-------- 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y-------- 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence 6899999999999999998754 1135554 45643 3333333221100000 0
Q ss_pred CCCEEEecCHHHhh--ccCcEEEEeccCC
Q 011641 63 GKNLFFSTDVEKHV--SEADIVFVSVNTP 89 (480)
Q Consensus 63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp 89 (480)
.....+.++++.+ .+.|+|+.|+|+.
T Consensus 73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 73 -PEGGGEISGLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred -ccccccCCHHHHhhccCCCEEEECCcCc
Confidence 0011234777766 3689999998764
No 350
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.15 Score=54.18 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=33.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||.|||+|..|.+.|..|.+. |++|+++|........+.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l~ 49 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKAA 49 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHHH
Confidence 4799999999999998888888 999999998755444343
No 351
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.62 E-value=0.041 Score=51.64 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=32.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.-..+.|+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 4799999999999999999998 75 8999998743333333
No 352
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.14 Score=55.02 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|+|+|..|.++|..|.++ |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999988 99999999754
No 353
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.60 E-value=0.038 Score=54.54 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=62.8
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.- .+..++..|.++|.+|.+||+.....+.....+ .+....+
T Consensus 2 ~I~IIG~G~----------mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~ 50 (279)
T PRK07417 2 KIGIVGLGL----------IGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST 50 (279)
T ss_pred eEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence 699999754 678899999999999999998543222111111 1111223
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
..++++++|.||++++-+..... .+++...+++..+|.|...+-
T Consensus 51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence 33568899999999997765442 456766666667889987754
No 354
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.59 E-value=0.015 Score=60.49 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999864
No 355
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.17 Score=53.48 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 489999999999999999988 99999999764
No 356
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.58 E-value=0.051 Score=53.91 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcc
Q 011641 345 PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
....+++.|.+.|.+|.+||+.....+...+ .+.....++.++++++|+|++++..+.
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence 5678999999999999999986543322221 124456788999999999999999854
Q ss_pred -ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 425 -FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 425 -~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
++++- .+.+...+++..+|||+..+-.. +.+++.|+.|..
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33321 13455556666699999966643 234456777755
No 357
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.048 Score=53.57 Aligned_cols=71 Identities=31% Similarity=0.542 Sum_probs=53.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-+ .+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 479999987 9999999999988 8899876431 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 203 IvV~AvGkp~~i---------~-----------~~~vk~gavvIDvG 229 (281)
T PRK14183 203 IVIVGVGKPNLI---------T-----------EDMVKEGAIVIDIG 229 (281)
T ss_pred EEEEecCccccc---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 24577899998754
No 358
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.094 Score=51.70 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=60.5
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|.|+|-+. .-..+|+..|.++|++|.+.+-.
T Consensus 152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~------------------------------- 191 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK------------------------------- 191 (285)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence 33467899999999654 44689999999999999985421
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
..++.+.+++||.||.++..+.| ++. +.+++.++|||.-
T Consensus 192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG 230 (285)
T PRK14189 192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG 230 (285)
T ss_pred -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence 12466778999999999999987 343 4456667999975
No 359
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.56 E-value=0.099 Score=47.58 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCc
Q 011641 315 VASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSP 394 (480)
Q Consensus 315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
.+.+...+++++|+|+|.+- .-...+++.|.++|++|.+.+...
T Consensus 35 ~~~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~--------------------------- 78 (168)
T cd01080 35 LKRYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT--------------------------- 78 (168)
T ss_pred HHHcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc---------------------------
Confidence 33344578999999999642 236779999999999999877532
Q ss_pred ccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 395 TMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
+++.+.+.+||+||.+|.-+.+ ++.+.+ +...+|||.-.-
T Consensus 79 ---------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~p 118 (168)
T cd01080 79 ---------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGIN 118 (168)
T ss_pred ---------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccCC
Confidence 2346678999999999998874 554443 445689998543
No 360
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.54 E-value=0.054 Score=53.98 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
-||+|+| .||.|.-+...|+.+ |..++....-+.. + . ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence 4899999 599999999999987 6666655432211 0 0 012344457899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999874
No 361
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.11 Score=51.15 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=60.8
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+++..|.++|++|.+.....
T Consensus 149 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T------------------------------ 189 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT------------------------------ 189 (287)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44467899999999543 567899999999999999865432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 190 ------~~l~~~~~~ADIvIsAvGkp~~i~--~~~v----k~GavVIDVG 227 (287)
T PRK14173 190 ------QDLPAVTRRADVLVVAVGRPHLIT--PEMV----RPGAVVVDVG 227 (287)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999854 3333 4456999975
No 362
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.53 E-value=0.044 Score=54.29 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=51.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe---cCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (480)
.++.|||+|-+|.+++..|++. |. +|++++|++++.+.|.+..... ..+... .+..+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~~--------------~~~~~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQV--------------GVITRLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhhc--------------Ccceeccchhhhhhccc
Confidence 3689999999999999999988 65 7999999999998886521000 011111 12234457
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+||-|+|..
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 899999997653
No 363
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.53 E-value=0.029 Score=51.16 Aligned_cols=69 Identities=23% Similarity=0.491 Sum_probs=45.7
Q ss_pred CcEEEEECCChhHHHHHH-HHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGPTMA-VIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~-~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|.++.|||+|++|.+++. .+.++. |++ |-++|++++.+-.-..+ .++++ -++++.-++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~ 144 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKK 144 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHh
Confidence 458999999999999996 455332 666 55799999976432222 33332 123344343
Q ss_pred -cCcEEEEeccC
Q 011641 78 -EADIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|+.|+|||.
T Consensus 145 ~dv~iaiLtVPa 156 (211)
T COG2344 145 NDVEIAILTVPA 156 (211)
T ss_pred cCccEEEEEccH
Confidence 78999999984
No 364
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.059 Score=53.15 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++..++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999987 8899877531 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. + ...+++|.+||+.+
T Consensus 201 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDVG 227 (287)
T PRK14173 201 VLVVAVGRPHLI---------T-----------PEMVRPGAVVVDVG 227 (287)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24578899998743
No 365
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.52 E-value=0.11 Score=52.41 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|-+|. +|..+|++. |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999997777 566666632 8999999999999887665
No 366
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.51 E-value=0.045 Score=55.51 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=41.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||||+|+|+ |++|..+...|.++ .|..++..+... +.. |+ ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 478999995 99999999999965 133444455332 211 21 111111 1133322 2233 58
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 66 ~vD~vFla~p~ 76 (336)
T PRK05671 66 QVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEcCCH
Confidence 89999999873
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.14 Score=54.24 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||.|||+|..|.+.|..|+++ |++|.++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999999889988 99999999864
No 368
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.50 E-value=0.054 Score=55.19 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEE-ECC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~ 35 (480)
|||+|+|+ |++|..++..|..+ +.+++..+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999999886 35788777 554
No 369
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.47 E-value=0.075 Score=45.24 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.7
Q ss_pred cEEEEEC----CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -+.+|.-+...|.++ |++|+.++...+.+ .+.++..+++|.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 799999999999997 99999887643211 24667778777337
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 89999999873 2345666666554 3455666533 3344565555554
No 370
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.47 E-value=0.074 Score=52.86 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=75.8
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++++|+|+.- -.-+++..+..-|..|..|||+.+.+.... .
T Consensus 141 G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~a-----------------------~ 187 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAEA-----------------------F 187 (406)
T ss_pred eeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHHh-----------------------c
Confidence 4467899999999864 346888899999999999999998765432 2
Q ss_pred ceEEecCHHhhcccccEEEEEecC-cccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEW-DEFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~-~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
++++. +++|.+..||-+.++++- |+-+++=-++.+..|++...||.+.+ ++|..
T Consensus 188 gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 188 GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 35554 789999999999998887 55444333455678888778888754 66654
No 371
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.44 E-value=0.02 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|+|||.|.+|+++|..|+++ |++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 7999999999999999999998 999999999753
No 372
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.43 E-value=0.081 Score=55.97 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhccc---ccEEEEEecCc
Q 011641 347 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKD---AHGVCILTEWD 423 (480)
Q Consensus 347 ~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---ad~vvi~t~~~ 423 (480)
..++..|.++|++|.+||-.....+..... .+.-.++..++++.+.+++ +|+|+++....
T Consensus 3 ~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~-----------------~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g 65 (459)
T PRK09287 3 KNLALNIASHGYTVAVYNRTPEKTDEFLAE-----------------EGKGKKIVPAYTLEEFVASLEKPRKILLMVKAG 65 (459)
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----------------hCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCc
Confidence 568899999999999999865543322110 0001246678899998875 89999999887
Q ss_pred ccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCC
Q 011641 424 EFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~ 470 (480)
+--+--++.+...+.+..+|||+.|.... +.+++.|+.|.+.|..+-
T Consensus 66 ~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG 118 (459)
T PRK09287 66 APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118 (459)
T ss_pred hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCC
Confidence 63332235677777766699999997754 344567999998876443
No 373
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.41 E-value=0.068 Score=53.90 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=65.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++|+|+|+ .+.+..++..|.+.|.+|.++++.-... ..... .+
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G 61 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG 61 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence 357899999997 4688999999999999999987653322 11111 12
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
+... +..++++.+|+|+++++-....++-.+.+...+++..+|+=+
T Consensus 62 ~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 62 FEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred CeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 3333 789999999999999987665543325677777655455433
No 374
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.41 E-value=0.1 Score=54.95 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEc--CCCChHHHHHhhhccccCCCCCCCC
Q 011641 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYD--PQVTEDQIQRDLTMNKFDWDHPLHL 389 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+.+++.-+..+.+++|+|+|.+. -...+++.|...|++|.+|| |....+...
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~---------------- 295 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQAAM---------------- 295 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----------------
Confidence 33444434568999999999753 67889999999999999995 433211110
Q ss_pred CCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 390 QPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
.+..+ .+++++++.+|+|+++|..+.. ++. +..+.|++.+++++.-+.
T Consensus 296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence 12222 3678899999999999876543 343 445678888899998665
No 375
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.068 Score=52.58 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=53.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987531 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. . ...+++|.+||+.+
T Consensus 203 IvI~AvG~~~~i---------~-----------~~~vk~GavVIDvG 229 (284)
T PRK14170 203 ILVVATGLAKFV---------K-----------KDYIKPGAIVIDVG 229 (284)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24577899998744
No 376
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.14 Score=50.44 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=60.6
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|.|+|=+- .-..+|+..|.++|++|.+.....
T Consensus 151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 191 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------ 191 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 567889999999999999976532
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- ..+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvI~AvG~~~~i--~~~~v----k~GavVIDvG 229 (284)
T PRK14170 192 ------KDLPQVAKEADILVVATGLAKFV--KKDYI----KPGAIVIDVG 229 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence 24566789999999999999984 43333 4456999975
No 377
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.38 E-value=0.069 Score=52.55 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=53.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++++..+.||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899877431 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-. + ...+++|++||+.+
T Consensus 202 IvI~AvG~p~~i---------~-----------~~~vk~GavVIDvG 228 (282)
T PRK14169 202 ILVVAVGVPHFI---------G-----------ADAVKPGAVVIDVG 228 (282)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 24578899998743
No 378
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.25 Score=52.14 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=65.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++.. .+.|.+| .. +... .+.+ .+.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g-~~-----------------~~~g~~~~~-~~~ 67 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPED-VE-----------------LHSGGWNLE-WLL 67 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcC-CE-----------------EEeCCCChH-Hhc
Confidence 36799999999999999999876423899999976421 1223221 10 1111 1323 367
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|. +...+..+.+ ++...+.+..+|-+..|..-.||.. +..+|...+
T Consensus 68 ~~d~vV~SpgI~~-----------~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 68 EADLVVTNPGIAL-----------ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred cCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 8998777643332 2222333221 2222222356777777776666655 567777643
No 379
>PRK01581 speE spermidine synthase; Validated
Probab=95.37 E-value=0.82 Score=46.71 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=77.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCC-CcCCChHHHHhhhcCCCEEE-ecCHHHhh--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLP-IYEPGLDGVVKQCRGKNLFF-STDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (480)
.+|.|||+|. |..+.. +.++.+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgGd-G~tlre-lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGGD-GLALRE-VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCCH-HHHHHH-HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 4799999984 444444 44442236899999999988877741 000 000000 1123433 23433322
Q ss_pred --ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH---HHHHHHHhcCCCCceE
Q 011641 77 --SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQ 151 (480)
Q Consensus 77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~---~l~~~l~~~~~g~~~~ 151 (480)
...|+||+-+|.|... ...--+-.+.++.+...|+++.+++..++.+..... .+...+++.+.....+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 3469999998766431 111122356778888999999988776654432222 2344555543222233
Q ss_pred EeeCCcc
Q 011641 152 ILSNPEF 158 (480)
Q Consensus 152 v~~~Pe~ 158 (480)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456666
No 380
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.36 E-value=0.14 Score=50.39 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|++|.+.....
T Consensus 150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 190 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------ 190 (282)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34467899999999533 456889999999999999875432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.-
T Consensus 191 ------~~l~~~~~~ADIvI~AvG~p~~i--~~~~v----k~GavVIDvG 228 (282)
T PRK14169 191 ------RNLKQLTKEADILVVAVGVPHFI--GADAV----KPGAVVIDVG 228 (282)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCcEEEEee
Confidence 24567789999999999999984 43333 4456999975
No 381
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.3 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4789999999999999999998 99999999865
No 382
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.071 Score=52.83 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=53.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++++.++.||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899887431 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- + ...+++|.+||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDvG 230 (297)
T PRK14186 204 ILVAAAGRPNLI---------G-----------AEMVKPGAVVVDVG 230 (297)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999876311 1 24578899998743
No 383
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.34 E-value=0.05 Score=57.12 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=45.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcC------C--CCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC------P--SIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|+|+|.||..++..|.++. . +.+ +.++|++.++.+.+. . ....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence 68999999999999998886531 1 234 345688876532110 0 123467888
Q ss_pred HHhhc--cCcEEEEeccC
Q 011641 73 EKHVS--EADIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~--~aDvVii~Vpt 88 (480)
++.+. +.|+|+.|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88775 57999999764
No 384
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.32 E-value=0.14 Score=50.35 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|.|+|=+- .-..+|+..|.++|++|.++....
T Consensus 151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T------------------------------ 191 (282)
T PRK14182 151 ARVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 33467899999999543 567899999999999999976542
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvI~AvGk~~~i~--~~~i----k~gaiVIDvG 229 (282)
T PRK14182 192 ------ADLAGEVGRADILVAAIGKAELVK--GAWV----KEGAVVIDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999999844 3333 4456899975
No 385
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.28 E-value=0.08 Score=52.08 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=55.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.|+++..+.||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999988 8899988631 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|.-- . ...+++|.+||+.++
T Consensus 205 IvIsAvGk~~~i------------------~--~~~ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVGKPEFI------------------K--ADWISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCCCcCcc------------------C--HHHcCCCCEEEEecC
Confidence 999999876311 1 246789999997654
No 386
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.12 Score=51.28 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=76.4
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhh-h-ccccCCCCCCCCCCCC-----cccc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDL-T-MNKFDWDHPLHLQPMS-----PTMV 397 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-----~~~~ 397 (480)
++|+|+|... ....++..|..+|.+|.+||+.....+..... . ....+ .+....+ ....
T Consensus 4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 69 (287)
T PRK08293 4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRY----VRDLEATKEAPAEAAL 69 (287)
T ss_pred cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHH----HHcCCCChhhhHHHHH
Confidence 5899999754 77889999999999999999864432111100 0 00000 0000011 1123
Q ss_pred cceEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCChhhhhhc---CcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREI---GFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~---g~~y~~i 465 (480)
.++++.+++.++++++|.|+.++.-+. ++.--++++....++..+|.+....+....+.+. .-++.|+
T Consensus 70 ~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~ 141 (287)
T PRK08293 70 NRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL 141 (287)
T ss_pred cCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence 567788899999999999999987542 3333345666666655566576666665444432 2345554
No 387
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.23 E-value=0.04 Score=45.17 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=45.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
.+|+|+|+|..|..++..+.+. .|+. +.++|++++++..-- +.+.+..+.+++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 3799999999999998655543 2665 567899987542111 235555566665444
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|+-++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999985
No 388
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.23 E-value=0.14 Score=50.40 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.++-++++++|.|+|=|- .-..+++..|.++|++|.+.+...
T Consensus 150 ~~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t---------------------------- 192 (284)
T PRK14190 150 KEYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT---------------------------- 192 (284)
T ss_pred HHcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc----------------------------
Confidence 3344467999999999543 567889999999999999875321
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 193 --------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG 230 (284)
T PRK14190 193 --------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG 230 (284)
T ss_pred --------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2456778999999999999998 444444 4456999974
No 389
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.19 E-value=0.083 Score=52.37 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=54.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988531 234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|++||+.+
T Consensus 213 Ivv~AvGk~~~i---------~-----------~~~vk~gavVIDvG 239 (299)
T PLN02516 213 IVIAAAGQAMMI---------K-----------GDWIKPGAAVIDVG 239 (299)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 24578899998744
No 390
>PRK00536 speE spermidine synthase; Provisional
Probab=95.19 E-value=0.6 Score=45.62 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=66.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.||-|||.|--|+ +..+.++ ..+|..+|+|++.++..++-. | .+.. ...+.+++......+.- +..|
T Consensus 74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~l-P----~~~~---~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISFF-P----HFHE---VKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHHC-H----HHHH---hhcCCCEEEeehhhhccCCcCC
Confidence 5899999999876 7777776 349999999999998877621 1 1111 12234555544433322 4689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+||+-.. + + .+-.+.+.+.|+++.+++..|+.|-
T Consensus 142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9987621 1 1 2334677888999999988877653
No 391
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.27 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|+|.|..|.+.|..|+++ |++|+++|.++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 5799999999999999999998 999999998653
No 392
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.17 E-value=0.08 Score=52.10 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=53.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+..+.||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 678999999999988 8899887531 235555678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~vk~gavVIDvG 230 (282)
T PRK14180 204 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 230 (282)
T ss_pred EEEEccCCcCcC---------C-----------HHHcCCCcEEEEec
Confidence 999999876311 1 24577899998743
No 393
>PRK05868 hypothetical protein; Validated
Probab=95.16 E-value=0.022 Score=58.70 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=32.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999998 999999998765
No 394
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.15 E-value=0.055 Score=54.85 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=54.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
+||+|||+ |++|.-+...|+++ .|..++..+.-+.+ .|+ ++...+ ..+++. ++++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 68999996 99999999999984 36667777644311 121 111111 124443 2333 2378
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~ST 128 (480)
+|++|+|+|.. +...+.+.+ ..+..||+.|.
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence 99999998742 233344433 45788888663
No 395
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.14 E-value=0.15 Score=50.10 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=60.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 191 (282)
T PRK14166 151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 456889999999999999866432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDvG 229 (282)
T PRK14166 192 ------KDLSLYTRQADLIIVAAGCVNLL--RSDMV----KEGVIVVDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24567789999999999999984 43333 4456999975
No 396
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.14 E-value=0.079 Score=52.12 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=53.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++..+.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999987 8899987641 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- + ...+++|.+||+.+
T Consensus 203 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDvG 229 (282)
T PRK14166 203 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 229 (282)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999876311 1 24567899998744
No 397
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.18 Score=50.02 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=60.5
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-.+++++|.|+|=+- .-..+|+..|.++|++|.+.....
T Consensus 151 ~~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T----------------------------- 192 (297)
T PRK14186 151 SQQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT----------------------------- 192 (297)
T ss_pred HhCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 334467899999999533 457889999999999999975432
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ ++.++|||.-
T Consensus 193 -------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDvG 230 (297)
T PRK14186 193 -------QDLASITREADILVAAAGRPNLI--GAEMV----KPGAVVVDVG 230 (297)
T ss_pred -------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43333 4456999975
No 398
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.12 E-value=0.064 Score=54.46 Aligned_cols=68 Identities=18% Similarity=0.391 Sum_probs=42.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (480)
+||||||+ |++|.-+...|+++ +.++ +..+..... .|+ .+...+ ..+.+. .+.++ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk-~~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGK-TVQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCC-CeeeCC----------cceEEEeCCHHH-h
Confidence 68999995 99999999999964 4677 555544311 121 111111 123332 24443 6
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|.|+|.
T Consensus 67 ~~~Divf~a~~~ 78 (347)
T PRK06728 67 EGVDIAFFSAGG 78 (347)
T ss_pred cCCCEEEECCCh
Confidence 889999999874
No 399
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.11 E-value=0.17 Score=49.83 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=61.2
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+...
T Consensus 152 ~y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T----------------------------- 193 (284)
T PRK14177 152 EYGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT----------------------------- 193 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344478999999999543 567889999999999999977532
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ ++.++|||.-
T Consensus 194 -------~~l~~~~~~ADIvIsAvGk~~~i--~~~~i----k~gavVIDvG 231 (284)
T PRK14177 194 -------QNLPSIVRQADIIVGAVGKPEFI--KADWI----SEGAVLLDAG 231 (284)
T ss_pred -------CCHHHHHhhCCEEEEeCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566689999999999999984 33333 4456999975
No 400
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.11 E-value=0.056 Score=51.49 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=50.4
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+|+ |.+|.+++..|.+. +++|.++-|++. ..+.+.+....+.+-++ .-..++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~------------~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEADY------------DDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-T------------T-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeeccc------------CCHHHHHHHHcCCc
Confidence 789995 99999999999997 999999999863 45666543222111111 11134556789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
No 401
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.10 E-value=0.17 Score=48.44 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=47.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC---eEEEEECC----HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+||.|+|+|.+|..+|..|+.. |. +++++|++ .++.+.|.... .++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~~--------~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPDK--------NEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHHH--------HHHHHHhccCc--ccCCHHH
Confidence 4799999999999999999987 75 59999998 44432221100 01111100001 1135666
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999998876
No 402
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.10 E-value=0.13 Score=52.16 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=51.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|+ |.||..++..|+.+. | .+++++++++++.+.+..... .+.+ .+.++++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998531 3 689999999888877664200 0111 2456778999
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|+.+...+
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999887654
No 403
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.09 E-value=0.2 Score=52.94 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=65.3
Q ss_pred EEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cCHHHhhcc
Q 011641 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
+|-|||.|..|.+ +|..|+++ |++|+++|.+.. ..+.|.+. ++++. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999998 999999997653 22333321 12221 122 23667
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH----------HHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|. +...++.+.+ -+...+++..+|.+..|..-.||.. +..+|+..+
T Consensus 59 ~d~vV~spgi~~-----------~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 59 ADVVVVSAAIKD-----------DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCEEEECCCCCC-----------CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 998887633222 2122232211 1123333446777777776555554 677887653
No 404
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.05 E-value=0.13 Score=52.70 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEEC
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDI 34 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~ 34 (480)
||+|||||+ |++|.-|...+.++ +.++ +..+..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss 37 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST 37 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence 799999995 99999999845543 3676 666544
No 405
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.2 Score=49.25 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=60.0
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------ 192 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------ 192 (278)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44468999999999543 467889999999999999976422
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDv 229 (278)
T PRK14172 193 ------KNLKEVCKKADILVVAIGRPKFI--DEEYV----KEGAIVIDV 229 (278)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCcEEEEe
Confidence 24566789999999999999984 43334 445699998
No 406
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.04 E-value=0.1 Score=51.17 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.++.+..++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999987 8899988641 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-- + ...+++|.+||+.
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDv 229 (278)
T PRK14172 204 ILVVAIGRPKFI---------D-----------EEYVKEGAIVIDV 229 (278)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCcEEEEe
Confidence 999999876311 1 2457889999874
No 407
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.04 E-value=0.091 Score=43.62 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 4799999999999999999998 89999999875
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.02 E-value=0.084 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|||+|.+|.++|..|+.. |. +++++|.+.-....|++
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~R 66 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQR 66 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCc
Confidence 4799999999999999999998 77 89999998655555554
No 409
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.21 Score=49.53 Aligned_cols=121 Identities=10% Similarity=0.031 Sum_probs=69.3
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhh-hccccCCCCCCCC-CCCCcccccceEE
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDL-TMNKFDWDHPLHL-QPMSPTMVKQVSV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 402 (480)
++|+|+|+.. ....++..|.++|.+|.+||+.-+..+..... ........+.... .........+++.
T Consensus 2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 5899999865 77889999999999999999865432221100 0000000000000 0000011234677
Q ss_pred ecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEE-EEcCCCCChhhhh
Q 011641 403 VWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFV-FDGRNVVDANKLR 456 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~v-iD~~~~~~~~~~~ 456 (480)
+++++++++++|+|+.++.-+. .+..-++++.+.+++..+| +|+.. +++..+.
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~ 126 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST-MSPTEIA 126 (288)
T ss_pred eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHH
Confidence 8889999999999999987653 2222234556665555455 45555 5555444
No 410
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.02 E-value=0.061 Score=54.76 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=40.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~ 78 (480)
+||+||| .|++|.-+...|+++ .|..++..+..... .|+ ++...+ ..+.+.. +. +.+.+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~-~~~~~ 69 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTE-DSFDG 69 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCH-HHHcC
Confidence 6899999 599999999999985 12234444432211 011 111111 1123322 33 34689
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||+|+|.
T Consensus 70 ~D~vf~a~p~ 79 (344)
T PLN02383 70 VDIALFSAGG 79 (344)
T ss_pred CCEEEECCCc
Confidence 9999999874
No 411
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.01 E-value=0.2 Score=49.42 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEEcCCCCh--HHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK----ARLSIYDPQVTE--DQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+..||+|+|+ +..+..|++.|.++| .+|.++|+.... +.+...
T Consensus 2 ~~mkI~~IG~----------G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~--------------------- 50 (279)
T PRK07679 2 SIQNISFLGA----------GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK--------------------- 50 (279)
T ss_pred CCCEEEEECc----------cHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh---------------------
Confidence 3458999997 468899999999998 789999975321 111111
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
.++....+..++++++|+||+++.-+.+.+. .+.+....++..+|||.-+=+..+.+++
T Consensus 51 -~g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 51 -YGVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred -cCceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 1345567888888999999999998877652 3556555554459999866557776665
No 412
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.41 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|+|+|..|.+.+..|+++ |++|+++|.++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999988888 99999999754
No 413
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.99 E-value=0.27 Score=47.15 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=33.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|..+|..|++. |. +++++|.+.=....+++
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR 53 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR 53 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence 4799999999999999999998 64 89999987644444544
No 414
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.98 E-value=0.28 Score=51.57 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=29.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||+|..|.++|..|.++ |++|+++|.++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 589999999999999999998 999999997643
No 415
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.17 Score=49.94 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=61.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-.+++++|+|+|-+- .-..+++..|.++|++|.+.+-..
T Consensus 152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------ 192 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------ 192 (286)
T ss_pred cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence 34468999999999532 367899999999999999876321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
.++.+.+++||.||.++..+.|- ..+. .++..+|||.-.-.
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~i--~~~~----vk~gavVIDvGi~~ 233 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGLV--TKDV----VKEGAVIIDVGNTP 233 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCccc--CHHH----cCCCcEEEEcCCCc
Confidence 24567789999999999999874 3333 34456999986543
No 416
>PRK06753 hypothetical protein; Provisional
Probab=94.97 E-value=0.029 Score=57.52 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=32.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999998 999999998865
No 417
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.21 Score=49.16 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++. ++..+-++++++|.|+|=+. .-..+|+..|.++|++|.+.+-..
T Consensus 143 ~aii~l-L~~y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T-------------------- 192 (282)
T PRK14180 143 KGIMTM-LREYGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT-------------------- 192 (282)
T ss_pred HHHHHH-HHHhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC--------------------
Confidence 334443 33344478999999999543 567889999999999999875432
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+-+++||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 193 ----------------~dl~~~~k~ADIvIsAvGkp~~i--~~~~v----k~gavVIDvG 230 (282)
T PRK14180 193 ----------------TDLKSHTTKADILIVAVGKPNFI--TADMV----KEGAVVIDVG 230 (282)
T ss_pred ----------------CCHHHHhhhcCEEEEccCCcCcC--CHHHc----CCCcEEEEec
Confidence 24455689999999999999984 44334 4456999974
No 418
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.96 E-value=0.32 Score=43.78 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=69.2
Q ss_pred HHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCC
Q 011641 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQP 391 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
+-+.+..+-.+.++++.|+|... -...+++.|...|+.|.++|-- +....+.
T Consensus 11 d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~D--Pi~alqA---------------- 62 (162)
T PF00670_consen 11 DGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEID--PIRALQA---------------- 62 (162)
T ss_dssp HHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SS--HHHHHHH----------------
T ss_pred HHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECC--hHHHHHh----------------
Confidence 34444444467899999999765 5689999999999999998742 2111111
Q ss_pred CCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC---ChhhhhhcCcEEEEecC
Q 011641 392 MSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV---DANKLREIGFIVYSIGK 467 (480)
Q Consensus 392 ~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~---~~~~~~~~g~~y~~iG~ 467 (480)
..++++.. +++++++.+|.+|-.|..... ++.+. .+.|+..+++.+.-..= +-+.+++.+..-..+..
T Consensus 63 ----~~dGf~v~-~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~ 133 (162)
T PF00670_consen 63 ----AMDGFEVM-TLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP 133 (162)
T ss_dssp ----HHTT-EEE--HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred ----hhcCcEec-CHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence 12445554 689999999999999999764 23333 45678887777765542 23344445555555543
No 419
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.96 E-value=0.18 Score=49.51 Aligned_cols=79 Identities=22% Similarity=0.108 Sum_probs=59.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|++|.+..-..
T Consensus 151 ~~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T------------------------------ 191 (281)
T PRK14183 151 YEIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT------------------------------ 191 (281)
T ss_pred cCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 33467999999999532 456889999999999999865321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.+++|-. .+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvGkp~~i~--~~~v----k~gavvIDvG 229 (281)
T PRK14183 192 ------KDLKAHTKKADIVIVGVGKPNLIT--EDMV----KEGAIVIDIG 229 (281)
T ss_pred ------cCHHHHHhhCCEEEEecCcccccC--HHHc----CCCcEEEEee
Confidence 245667899999999999999844 3333 4456899975
No 420
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.91 E-value=0.023 Score=56.72 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| +|++|..++..|+++ |++|++++++++....+........ .+.+.-..+++++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999998 9999999998765433221110000 011111123455667889
Q ss_pred EEEEecc
Q 011641 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9888764
No 421
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.11 Score=51.15 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=52.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++++||| .+.+|.|+|..|.+ + +..|+.+... |.++++.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 68899999999987 5 7788877531 2355666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
||+||.+++.|.-- . ..++++|.+||+.
T Consensus 204 ADIvV~AvGkp~~i---------~-----------~~~ik~GavVIDv 231 (284)
T PRK14193 204 ADIIVAAAGVAHLV---------T-----------ADMVKPGAAVLDV 231 (284)
T ss_pred CCEEEEecCCcCcc---------C-----------HHHcCCCCEEEEc
Confidence 99999999876311 1 2467889999864
No 422
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.11 Score=51.39 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899987641 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-. + ...+++|++||+.
T Consensus 206 IvVsAvGkp~~i---------~-----------~~~ik~gaiVIDV 231 (294)
T PRK14187 206 ILVAAVGIPNFV---------K-----------YSWIKKGAIVIDV 231 (294)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEe
Confidence 999999876311 1 2456789999864
No 423
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.89 E-value=0.14 Score=51.14 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=31.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|.|.| +|++|..++..|.++ |++|++++++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 6899999 699999999999998 9999999987653
No 424
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.89 E-value=0.064 Score=51.81 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=35.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+|+|.|+| .|.+|..++..|+++ |++|+++.|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 57899999 599999999999998 99999999998876554
No 425
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.87 E-value=0.27 Score=56.04 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred EEEEECCChhHHHH-HHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccC
Q 011641 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
+|.|||+|..|.+. |..|.++ |++|+++|.++. ..+.|.+. ++++. ....+.+.++
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~-------------------gi~~~~g~~~~~~~~~ 64 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAK-------------------GARFFLGHQEEHVPED 64 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHcCCC
Confidence 49999999999998 8899988 999999997642 23334331 11211 1112336678
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcchHHH-HHHHHHhc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
|+||++-.-|. +...+..+.+ ++ ...++...+|.+..|..-.||.. +..+|+..
T Consensus 65 d~vV~SpgI~~-----------~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 65 AVVVYSSSISK-----------DNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred CEEEECCCcCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98887633222 2122333221 11 22333335777777776666555 56777764
No 426
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.21 Score=49.49 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=59.9
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------ 194 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------ 194 (294)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 457889999999999999876532
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.
T Consensus 195 ------~~l~~~~~~ADIvVsAvGkp~~i--~~~~i----k~gaiVIDV 231 (294)
T PRK14187 195 ------RDLADYCSKADILVAAVGIPNFV--KYSWI----KKGAIVIDV 231 (294)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEe
Confidence 24566789999999999999984 43334 345699997
No 427
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.86 E-value=0.071 Score=59.03 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|++. |++|++|++.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 5799999999999999999998 999999998764
No 428
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.83 E-value=0.094 Score=51.57 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.4
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHH
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
+|.|+|+ |++|..++..|.+. |++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889996 99999999999998 99999999998754
No 429
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.82 E-value=0.21 Score=46.27 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=62.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|.|+|=+- .-..+|+..|.++|++|.+.|-..... +.. ....+|..+. ..
T Consensus 59 ~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~--~~~--------~~~~~hs~t~---~~-- 114 (197)
T cd01079 59 RLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQV--FTR--------GESIRHEKHH---VT-- 114 (197)
T ss_pred CCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCcccc--ccc--------cccccccccc---cc--
Confidence 57899999999543 567899999999999999997433211 000 0001111000 00
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
....++.+.+++||+||.++..++|+ +..+.+ ++.++|||.---
T Consensus 115 ~~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi~ 158 (197)
T cd01079 115 DEEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFASI 158 (197)
T ss_pred chhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCCC
Confidence 00112567899999999999999983 233333 445689997543
No 430
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.81 E-value=0.099 Score=52.67 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=53.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+++... |.|+++..+.||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899887531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-. . ...+++|.+||+.+
T Consensus 260 IvIsAvGkp~~v---------~-----------~d~vk~GavVIDVG 286 (345)
T PLN02897 260 IVIAAAGIPNLV---------R-----------GSWLKPGAVVIDVG 286 (345)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24578899998743
No 431
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.12 Score=50.93 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=53.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+..+.||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887531 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- . ...+++|.+||+.+
T Consensus 205 IvV~AvGkp~~i---------~-----------~~~vk~GavVIDvG 231 (288)
T PRK14171 205 IVVAAIGSPLKL---------T-----------AEYFNPESIVIDVG 231 (288)
T ss_pred EEEEccCCCCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 24578899998743
No 432
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.14 Score=50.46 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=53.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 7899887431 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++|.+++.|.-- . ...++++++||+.+
T Consensus 203 IvI~AvGk~~~i---------~-----------~~~ik~gaiVIDvG 229 (282)
T PRK14182 203 ILVAAIGKAELV---------K-----------GAWVKEGAVVIDVG 229 (282)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865311 1 24577899998743
No 433
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.26 Score=48.61 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=60.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG--DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
.+-++.+++|.|+|=+- .-..+|+..|.+ ++++|.+..-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T---------------------------- 194 (284)
T PRK14193 152 YDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT---------------------------- 194 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC----------------------------
Confidence 34467899999999643 567889999998 799999875421
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- ..+.+ ++.++|||.-
T Consensus 195 --------~~l~~~~k~ADIvV~AvGkp~~i--~~~~i----k~GavVIDvG 232 (284)
T PRK14193 195 --------RDLAAHTRRADIIVAAAGVAHLV--TADMV----KPGAAVLDVG 232 (284)
T ss_pred --------CCHHHHHHhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence 24677789999999999999984 43334 4456999975
No 434
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.64 E-value=0.45 Score=49.99 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-E----------CCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
++|+|.|.|++|..+|..|.+. |.+|+++ | +|.+.+.+.++.. ..+ ..+... .+.+..
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l-----~~~~~~---~~~~~i 302 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRI-----SEYAEE---FGAEYL 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCch-----hhhhhh---cCCeec
Confidence 5899999999999999999998 8999988 8 7777666655421 111 111000 011222
Q ss_pred cCHHHhh-ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCC
Q 011641 70 TDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGI 148 (480)
Q Consensus 70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~ 148 (480)
+ .++.+ .+||+++-|-.+.. .+ .+....+.. .+.-+|.+.-..|-| ..-.++|.+.+
T Consensus 303 ~-~~~i~~~d~DVliPaAl~n~----------It----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG--- 360 (445)
T PRK09414 303 E-GGSPWSVPCDIALPCATQNE----------LD----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG--- 360 (445)
T ss_pred C-CccccccCCcEEEecCCcCc----------CC----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence 2 22222 37999999965432 11 122333321 133344455444444 44556777654
Q ss_pred ceEEeeCCcccc
Q 011641 149 KFQILSNPEFLA 160 (480)
Q Consensus 149 ~~~v~~~Pe~~~ 160 (480)
+.+.|..+.
T Consensus 361 ---I~~vPD~la 369 (445)
T PRK09414 361 ---VLFAPGKAA 369 (445)
T ss_pred ---cEEECchhh
Confidence 456787753
No 435
>PLN02427 UDP-apiose/xylose synthase
Probab=94.64 E-value=0.046 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=34.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|.| +|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999999 5999999999999861 499999999877665544
No 436
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.27 Score=48.46 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-.+.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 198 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------ 198 (287)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence 34467999999999532 357889999999999999977322
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..|.|-. .+ ..++.++|||.-
T Consensus 199 ------~~l~~~~~~ADIvv~AvG~p~~i~--~~----~vk~gavVIDvG 236 (287)
T PRK14176 199 ------DDLKKYTLDADILVVATGVKHLIK--AD----MVKEGAVIFDVG 236 (287)
T ss_pred ------CCHHHHHhhCCEEEEccCCccccC--HH----HcCCCcEEEEec
Confidence 245667899999999999998743 32 335556999975
No 437
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.12 Score=50.68 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.++|..|... |..|+.+..+ +.++.+.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~---------------------------------t~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSK---------------------------------TENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecC---------------------------------hhHHHHHHhhCC
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|.-. -...++++++||+.+.
T Consensus 198 IvI~Avgk~~lv--------------------~~~~vk~GavVIDVgi 225 (279)
T PRK14178 198 ILVSAAGKAGFI--------------------TPDMVKPGATVIDVGI 225 (279)
T ss_pred EEEECCCccccc--------------------CHHHcCCCcEEEEeec
No 438
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.23 Score=48.94 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=59.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=+- .-..+++..|.++|++|.+.+-..
T Consensus 151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------ 191 (285)
T PRK14191 151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------ 191 (285)
T ss_pred hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence 34467899999999532 467889999999999999974321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~p~~i~--~~~v----k~GavVIDvG 229 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGKPDLIK--ASMV----KKGAVVVDIG 229 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCCCCcCC--HHHc----CCCcEEEEee
Confidence 234567899999999999999844 3333 4456899975
No 439
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.59 E-value=1.1 Score=46.87 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=74.6
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.+.+++|+|+|.+ .-+..++..|...| .+|.++|...... .+...++ +
T Consensus 176 ~~l~~~~VlViGaG----------~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g-----~-------------- 226 (417)
T TIGR01035 176 GSLKGKKALLIGAG----------EMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG-----G-------------- 226 (417)
T ss_pred CCccCCEEEEECCh----------HHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-----C--------------
Confidence 35788999999963 47788999999999 7899999865432 2222221 0
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcC---CCCEEEEcCCC--CChhhhhhcCcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ---KPAFVFDGRNV--VDANKLREIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~---~~~~viD~~~~--~~~~~~~~~g~~y~~i 465 (480)
..+ ...++.+++.++|+||.+|..++.- ++.+.+...+. .|.+++|...- +++.-..-.|..++.+
T Consensus 227 ~~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~v 297 (417)
T TIGR01035 227 EAV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDV 297 (417)
T ss_pred eEe-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEH
Confidence 011 1246778889999999999887753 45555555443 35699999742 3443222235655554
No 440
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.59 E-value=0.3 Score=48.50 Aligned_cols=79 Identities=20% Similarity=0.098 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------ 201 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------ 201 (299)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467889999999999999975432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-.-+ .+ ++.++|||.-
T Consensus 202 ------~nl~~~~~~ADIvv~AvGk~~~i~~~--~v----k~gavVIDvG 239 (299)
T PLN02516 202 ------PDPESIVREADIVIAAAGQAMMIKGD--WI----KPGAAVIDVG 239 (299)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCccCHH--Hc----CCCCEEEEee
Confidence 24577789999999999999875432 23 4456899975
No 441
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.3 Score=48.17 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=59.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+..-..
T Consensus 153 y~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T------------------------------ 193 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT------------------------------ 193 (288)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 456889999999999999865322
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 194 ------~~L~~~~~~ADIvV~AvGkp~~i~--~~~v----k~GavVIDvG 231 (288)
T PRK14171 194 ------HNLSSITSKADIVVAAIGSPLKLT--AEYF----NPESIVIDVG 231 (288)
T ss_pred ------CCHHHHHhhCCEEEEccCCCCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999998754 3333 4456999975
No 442
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.57 E-value=0.14 Score=41.57 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CEEE-EEcCCCChHHHH-HhhhccccCCCCCCCCCCCCcccccce
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK---ARLS-IYDPQVTEDQIQ-RDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|. ...+..|++.|.+.| .+|. ++++.-...... .++ ..
T Consensus 1 kI~iIG~----------G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~ 48 (96)
T PF03807_consen 1 KIGIIGA----------GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV 48 (96)
T ss_dssp EEEEEST----------SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred CEEEECC----------CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence 6888886 357899999999999 9999 558865432221 211 13
Q ss_pred EEec-CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 401 SVVW-DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~~~-~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.... +..++++.+|+|++.++...+.++- +.+....+ ..+|||.-
T Consensus 49 ~~~~~~~~~~~~~advvilav~p~~~~~v~-~~i~~~~~-~~~vis~~ 94 (96)
T PF03807_consen 49 QATADDNEEAAQEADVVILAVKPQQLPEVL-SEIPHLLK-GKLVISIA 94 (96)
T ss_dssp EEESEEHHHHHHHTSEEEE-S-GGGHHHHH-HHHHHHHT-TSEEEEES
T ss_pred ccccCChHHhhccCCEEEEEECHHHHHHHH-HHHhhccC-CCEEEEeC
Confidence 3444 7899999999999999998887643 23323323 34888864
No 443
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.57 E-value=0.29 Score=48.32 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------ 193 (285)
T PRK10792 153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------ 193 (285)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence 34467899999999532 357889999999999999975421
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- .. +..+..++|||.-
T Consensus 194 ------~~l~~~~~~ADIvi~avG~p~~v--~~----~~vk~gavVIDvG 231 (285)
T PRK10792 194 ------KNLRHHVRNADLLVVAVGKPGFI--PG----EWIKPGAIVIDVG 231 (285)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcccc--cH----HHcCCCcEEEEcc
Confidence 24567789999999999999974 33 3345567999986
No 444
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.56 E-value=0.13 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.9
Q ss_pred cEEEEECCChhHHHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIAL 22 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~ 22 (480)
|||+|||+|.||..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999987
No 445
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.43 E-value=0.068 Score=51.17 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=33.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.=....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 4799999999999999999998 65 79999877544444443
No 446
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.43 E-value=0.044 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 4799999999999999999999 999999998754
No 447
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.42 E-value=0.42 Score=49.31 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=60.0
Q ss_pred CCCeEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..++|+|+| +. ...-.++..|.++|.+|.+||+...
T Consensus 97 ~~~~I~IiGG~G----------lmG~slA~~l~~~G~~V~~~d~~~~--------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKG----------QLGRLFAKMLTLSGYQVRILEQDDW--------------------------------- 133 (374)
T ss_pred ccceEEEEcCCC----------hhhHHHHHHHHHCCCeEEEeCCCcc---------------------------------
Confidence 447999998 64 3678889999999999999997310
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
++++++++++|+||++++.+...+. +.++.. +++..+|+|.-.+
T Consensus 134 --~~~~~~~~~aDlVilavP~~~~~~~-~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 134 --DRAEDILADAGMVIVSVPIHLTEEV-IARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred --hhHHHHHhcCCEEEEeCcHHHHHHH-HHHHhC-CCCCcEEEECCCc
Confidence 1346778899999999998875432 345555 5666799999665
No 448
>PLN00203 glutamyl-tRNA reductase
Probab=94.41 E-value=1 Score=48.47 Aligned_cols=110 Identities=8% Similarity=0.046 Sum_probs=69.4
Q ss_pred HHHHHHHHhcC-cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCCChHH-HHHhhhccccCCCCC
Q 011641 310 FVNRVVASMFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQVTEDQ-IQRDLTMNKFDWDHP 386 (480)
Q Consensus 310 ~~~~~~~~l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~ 386 (480)
.++...+.++. ++.+++|+|+|.+ ..+..+++.|...|+ +|.++++.....+ +...++
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--------- 311 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--------- 311 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------
Confidence 33444444432 4789999999974 478889999999997 6999998765432 222110
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhc------CCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM------QKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~------~~~~~viD~~ 447 (480)
+..-.+...+++.+++.++|+||.+|.-+.+- +..+.+...+ .+|.++||.-
T Consensus 312 --------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 312 --------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred --------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeC
Confidence 00001112356778899999999999665542 3444444433 1467999974
No 449
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.38 E-value=0.077 Score=53.97 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=40.0
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeE---EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEV---AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V---~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
||+||| .|++|.-+...|+++ +|++ ..+..+.+.-+.+. ..+ ..+.+. .+. +.++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~-~~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKI-ESFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCCh-HHhc
Confidence 689999 799999999999986 6653 34444322111111 001 012222 133 3468
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999774
No 450
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.37 E-value=0.28 Score=48.33 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=76.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.||+|+|+. ..+..++..|.++|. +|.+||+.....+...+ ..++
T Consensus 3 ~~IgfIG~G----------~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---------------------~~g~ 51 (272)
T PRK12491 3 KQIGFIGCG----------NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---------------------KYGI 51 (272)
T ss_pred CeEEEECcc----------HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---------------------hcCc
Confidence 479999984 478999999999884 69999985433221110 0124
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCcccccCCC
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 478 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~ 478 (480)
..+.+..+.++++|+|++++.-+.+.++ .+.+....++..+|||.-.=++-+.+++. +| +..++.+-||.
T Consensus 52 ~~~~~~~e~~~~aDiIiLavkP~~~~~v-l~~l~~~~~~~~lvISi~AGi~i~~l~~~------l~-~~~~vvR~MPN 121 (272)
T PRK12491 52 TITTNNNEVANSADILILSIKPDLYSSV-INQIKDQIKNDVIVVTIAAGKSIKSTENE------FD-RKLKVIRVMPN 121 (272)
T ss_pred EEeCCcHHHHhhCCEEEEEeChHHHHHH-HHHHHHhhcCCcEEEEeCCCCcHHHHHHh------cC-CCCcEEEECCC
Confidence 5567788888999999999996555542 24555444444599999888887777652 12 12345666664
No 451
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.36 E-value=0.096 Score=55.54 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh----hcC------CCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ----CRG------KNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~----~~~------~~l~~t~ 70 (480)
.||+|||.|.-|+..|..|+ +. |++|.+||+.+.---.++-|..|.+ +....+... ... +++.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 48999999999999999776 45 8999999998765444444544433 333222111 111 2334434
Q ss_pred C--HHHhhccCcEEEEeccCC
Q 011641 71 D--VEKHVSEADIVFVSVNTP 89 (480)
Q Consensus 71 d--~~~a~~~aDvVii~Vptp 89 (480)
| .++..+..|.||+++...
T Consensus 117 Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 117 DLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred ccCHHHHHhcCCEEEEEcCCC
Confidence 3 566556899999998754
No 452
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.69 Score=49.24 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||+|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999653
No 453
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.29 E-value=0.17 Score=53.78 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
No 454
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.28 E-value=0.17 Score=51.33 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++.+..+.||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999988 8899987431 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-. + ...+++|.+||+.
T Consensus 277 IVIsAvGkp~~i---------~-----------~d~vK~GAvVIDV 302 (364)
T PLN02616 277 IIISAVGQPNMV---------R-----------GSWIKPGAVVIDV 302 (364)
T ss_pred EEEEcCCCcCcC---------C-----------HHHcCCCCEEEec
Confidence 999999876321 1 2457889999864
No 455
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.26 E-value=0.17 Score=49.08 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=73.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|+| .|-+|.|++..|..+ |. -+..+||+.... -+.....++..+.. + ....-...++++++++
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~--GVaaDlSHI~T~s~------V--~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTP--GVAADLSHINTNSS------V--VGFTGADGLENALKGA 97 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCC--cccccccccCCCCc------e--eccCChhHHHHHhcCC
Confidence 5899999 599999999888764 33 367889985211 11111111111000 0 0111124577889999
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 80 DIVFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 80 DvVii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
|+|+|+-.-|...... |+--..+-.-+......+++.++.-.+.++ |.|+.++-- ..++|.+.+
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vI--sNPVNstVPIaaevlKk~G 163 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVI--SNPVNSTVPIAAEVLKKAG 163 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEee--cCcccccchHHHHHHHHcC
Confidence 9999998877654210 000122334556666777777775554444 455555433 345666654
No 456
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.26 E-value=0.31 Score=49.43 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-++++++|.|+|=+- --..+|+..|.++|++|.+..-..
T Consensus 215 p~avielL-~~y~i~l~GK~vvVIGRS~---------iVGkPLa~LL~~~~ATVTicHs~T------------------- 265 (364)
T PLN02616 215 PKGCIELL-HRYNVEIKGKRAVVIGRSN---------IVGMPAALLLQREDATVSIVHSRT------------------- 265 (364)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCeEEEeCCCC-------------------
Confidence 34444443 3344578999999999533 456789999999999999975432
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.|- +.+.+ ++.++|||.-
T Consensus 266 -----------------~nl~~~~r~ADIVIsAvGkp~~i--~~d~v----K~GAvVIDVG 303 (364)
T PLN02616 266 -----------------KNPEEITREADIIISAVGQPNMV--RGSWI----KPGAVVIDVG 303 (364)
T ss_pred -----------------CCHHHHHhhCCEEEEcCCCcCcC--CHHHc----CCCCEEEecc
Confidence 24567789999999999999984 43333 4456999975
No 457
>PRK07588 hypothetical protein; Provisional
Probab=94.22 E-value=0.051 Score=56.15 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999998 999999998754
No 458
>PRK12320 hypothetical protein; Provisional
Probab=94.22 E-value=0.21 Score=55.37 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|.| +|++|..++..|.+. ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
No 459
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.21 E-value=0.92 Score=42.46 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=69.1
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHH-HHhhhccccCCCCCCCCCCCCcccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQI-QRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.++++++|+|.|+. .-+..+++.|.+.|++|.++|......+. ...+
T Consensus 23 ~~~l~gk~v~I~G~G----------~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--------------------- 71 (200)
T cd01075 23 TDSLEGKTVAVQGLG----------KVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--------------------- 71 (200)
T ss_pred CCCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence 457889999999985 26788999999999999999986432111 1111
Q ss_pred cceEEecCHHhhcc-cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC-CC----hhhhhhcCcEEEE
Q 011641 398 KQVSVVWDAYEATK-DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV-VD----ANKLREIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~-~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~-~~----~~~~~~~g~~y~~ 464 (480)
+.+..++ ++.+. ++|+++-++-... ++-+.+ +.++.+ +|+++-|- +. .+.+++.|+.|.-
T Consensus 72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILYAP 137 (200)
T ss_pred -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEeC
Confidence 1222322 33333 7899886655433 454554 455655 89999996 22 2345577888843
No 460
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.21 E-value=0.15 Score=45.85 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=56.8
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCC-hHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT-EDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++|+|+|. .|....-+..|++.|.+|.+-...-+ ..+..++ +++
T Consensus 2 l~~k~IAViGy----------GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~----------------------~Gf 49 (165)
T PF07991_consen 2 LKGKTIAVIGY----------GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA----------------------DGF 49 (165)
T ss_dssp HCTSEEEEES-----------SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH----------------------TT-
T ss_pred cCCCEEEEECC----------ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH----------------------CCC
Confidence 36899999995 57789999999999999998766555 2222222 234
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEE
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVF 444 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~vi 444 (480)
+. .+..||++.||+|+++++-..-.++=-+++...|+....++
T Consensus 50 ~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 50 EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEE
T ss_pred ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEE
Confidence 33 47899999999999998654333332257788887654443
No 461
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.20 E-value=0.13 Score=56.02 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=29.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+|+|||.|..|+..|..|++. |++|+++|..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 4799999999999999999998 9999999964
No 462
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.17 E-value=0.073 Score=61.35 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|.-|++.|..|++. ||+|++||..+.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~ 340 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHD 340 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Confidence 5899999999999999999998 999999998643
No 463
>PRK07538 hypothetical protein; Provisional
Probab=94.16 E-value=0.054 Score=56.53 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999998 999999999764
No 464
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.14 E-value=0.41 Score=42.36 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=68.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
..++++|+|+|.. ..+..+++.|.+.| .+|.++|+.....+ ....++. ..-
T Consensus 16 ~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~~ 68 (155)
T cd01065 16 ELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LGI 68 (155)
T ss_pred CCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------ccc
Confidence 4578899999963 36788999999986 88999998654322 1222110 000
Q ss_pred ceEEecCHHhhcccccEEEEEecCccc--ccccHHHHHHhcCCCCEEEEcCCCCCh----hhhhhcCcEE
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEF--KTLDYQRIYDNMQKPAFVFDGRNVVDA----NKLREIGFIV 462 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~--~~~~~~~~~~~~~~~~~viD~~~~~~~----~~~~~~g~~y 462 (480)
.. ...+..+.++++|+||.+|+-+.. ...... ...++...+|+|.-..-.. +.+++.|..+
T Consensus 69 ~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 69 AI-AYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKT 135 (155)
T ss_pred ce-eecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCce
Confidence 01 234666778999999999988764 111111 1123445689999655321 3445566644
No 465
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.13 E-value=0.18 Score=50.69 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=68.7
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....++..|.+.|.+|.+||..-...+.....+ .++... +. .....++....+
T Consensus 3 kI~iiG~G----------~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~-~~-~~~~~~~~~~~~ 64 (325)
T PRK00094 3 KIAVLGAG----------SWGTALAIVLARNGHDVTLWARDPEQAAEINADR------ENPRYL-PG-IKLPDNLRATTD 64 (325)
T ss_pred EEEEECCC----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC------cccccC-CC-CcCCCCeEEeCC
Confidence 79999984 5889999999999999999998543222111110 000000 00 011124666778
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
+.++++++|+|+++++.+...+ -++.+.....+..+|++..|=+++
T Consensus 65 ~~~~~~~~D~vi~~v~~~~~~~-v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 65 LAEALADADLILVAVPSQALRE-VLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred HHHHHhCCCEEEEeCCHHHHHH-HHHHHHhhcCCCCEEEEEeecccC
Confidence 8888999999999999864433 224555555555689999865554
No 466
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.11 E-value=0.19 Score=55.79 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|+|||.|..|++.|..|++. |++|++||..+.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~ 361 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPE 361 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4799999999999999999998 999999998643
No 467
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.23 Score=48.93 Aligned_cols=73 Identities=19% Similarity=0.398 Sum_probs=52.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCC--CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~--G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| ...+|.|+|..|.++++ +..|+.+.. .|.++++.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs---------------------------------~T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS---------------------------------QSENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC---------------------------------CCCCHHHHHhh
Confidence 4799999 57899999999987621 356776532 12456667899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
||+||.+++.|.-. . ...+++|++||+.+
T Consensus 201 ADIvV~AvG~p~~i---------~-----------~~~ik~GavVIDvG 229 (287)
T PRK14181 201 ADIIIAAIGVPLFI---------K-----------EEMIAEKAVIVDVG 229 (287)
T ss_pred CCEEEEccCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 99999999876311 1 24578899998743
No 468
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.11 E-value=0.38 Score=48.57 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-.+++++|.|+|=+- --..+++..|.++|++|.+..-..
T Consensus 198 p~avi~LL-~~~~i~l~GK~vvVIGRS~---------iVGkPla~LL~~~~ATVTicHs~T------------------- 248 (345)
T PLN02897 198 PKGCVELL-IRSGVEIAGKNAVVIGRSN---------IVGLPMSLLLQRHDATVSTVHAFT------------------- 248 (345)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCEEEEEcCCC-------------------
Confidence 44555544 3344578999999999532 356788899999999998865322
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 249 -----------------~nl~~~~~~ADIvIsAvGkp~~v~--~d~v----k~GavVIDVG 286 (345)
T PLN02897 249 -----------------KDPEQITRKADIVIAAAGIPNLVR--GSWL----KPGAVVIDVG 286 (345)
T ss_pred -----------------CCHHHHHhhCCEEEEccCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999844 3333 4456999975
No 469
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.14 Score=50.75 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRIN 40 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
|+|-|.| .|++|..++..|.++ ||+|+++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5699999 599999999999998 999999999766543
No 470
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.10 E-value=0.083 Score=40.33 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.3
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.-|+..|..|+++ |++|++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999998 99999999864
No 471
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.09 E-value=0.43 Score=47.40 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCH---HHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---SRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~ 43 (480)
+++.|+|+|.+|.+++..|++. |.. |++++|++ ++.+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 3688999999999999999988 875 99999996 5655554
No 472
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.05 E-value=0.21 Score=49.22 Aligned_cols=72 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+.+..+ |.++.+.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~---------------------------------t~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSR---------------------------------TPDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||+||.+++.|.-- -...++++.+||+.+.
T Consensus 203 ~~ADIVI~AvG~p~li--------------------~~~~vk~GavVIDVGi 234 (286)
T PRK14184 203 READFLFVAIGRPRFV--------------------TADMVKPGAVVVDVGI 234 (286)
T ss_pred HhCCEEEEecCCCCcC--------------------CHHHcCCCCEEEEeee
No 473
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.02 E-value=1.7 Score=40.40 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh---h-c
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---V-S 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~-~ 77 (480)
+|.-+|+|.-..++..... .+++..|+++|++++.++..++..... ++ ..++.+ ..|..+. . .
T Consensus 43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence 5788888772222222111 112468999999999888665321000 00 012222 2233222 1 4
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.||+..... .+..+++.+...++++..++. .+...++.+++.+.+++.
T Consensus 111 ~~D~V~~~~~~~---------------~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 111 KFDRIFIGGGSE---------------KLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCEEEECCCcc---------------cHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 589998864321 135667777788888665554 333445556666666554
No 474
>PRK07236 hypothetical protein; Provisional
Probab=94.02 E-value=0.066 Score=55.30 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999998 999999998753
No 475
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.00 E-value=0.059 Score=56.20 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~ 37 (480)
|||.|||.|.-|+++|..|+++ | .+|++|++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 7 49999999764
No 476
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.99 E-value=0.071 Score=55.24 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999865689999999864
No 477
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.96 E-value=0.4 Score=48.47 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.||+|+|. .+....++..|.+.|.+|.+||+.....+.....+....+. . .......+...+
T Consensus 5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~------~--g~~~~~~~~~~~ 66 (328)
T PRK14618 5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYL------P--GVALPAELYPTA 66 (328)
T ss_pred CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccC------C--CCcCCCCeEEeC
Confidence 48999997 57899999999999999999999544322212111000000 0 001112355667
Q ss_pred CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 405 DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
++.++++++|.|+++++.... ..+.+.+++..+++|..+=+
T Consensus 67 ~~~e~~~~aD~Vi~~v~~~~~-----~~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 67 DPEEALAGADFAVVAVPSKAL-----RETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CHHHHHcCCCEEEEECchHHH-----HHHHHhcCcCCEEEEEeecc
Confidence 888889999999999998864 33445555556889988833
No 478
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.95 E-value=0.063 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4799999999999999999998 999999998764
No 479
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.89 E-value=0.067 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+++|.|||.|..|+.+|..|+++ |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36799999999999999999999 9999999997
No 480
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=93.88 E-value=0.21 Score=49.88 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCChH--HHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCc
Q 011641 346 AIDVCKGLLGDKARLSIYDPQVTED--QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
...+++.|.++|++|.+||+.-... +.+..+. ..+...++++.++++++|+|++++.-+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence 4789999999999999999854321 1111111 124567788999999999999999876
Q ss_pred cc-ccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 424 EF-KTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
+- +++ ...+...++...+|||+.-+-
T Consensus 93 aaV~eV-l~GLaa~L~~GaIVID~STIs 119 (341)
T TIGR01724 93 KGTFSI-ARTIIEHVPENAVICNTCTVS 119 (341)
T ss_pred HHHHHH-HHHHHhcCCCCCEEEECCCCC
Confidence 52 233 245666677667999995544
No 481
>PRK06847 hypothetical protein; Provisional
Probab=93.88 E-value=0.067 Score=54.80 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 36899999999999999999998 999999998754
No 482
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.87 E-value=0.26 Score=49.33 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=63.8
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA--RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+|+|+|+. .-+..++..|.+.|. +|.+||+.....+.....+ ....
T Consensus 6 ~~~I~IIG~G----------~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g--------------------~~~~ 55 (307)
T PRK07502 6 FDRVALIGIG----------LIGSSLARAIRRLGLAGEIVGADRSAETRARARELG--------------------LGDR 55 (307)
T ss_pred CcEEEEEeeC----------HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC--------------------CCce
Confidence 4689999974 477889999999985 8999998644322222111 0012
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
...+.+++++++|+||++|+-.....+ .+.+...+++..+|+|.-++
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~~~~v-~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGASGAV-AAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHHHHHH-HHHHHhhCCCCCEEEeCccc
Confidence 345677888999999999987654432 24455556655688997554
No 483
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.86 E-value=0.75 Score=44.05 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=35.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|+| .|.+|..+|..|+++ |++|+++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 7899999 599999999999998 999999999988766554
No 484
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.86 E-value=0.53 Score=46.45 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=59.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD----KARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+-++++++|.|+|=+- .-..+|+..|.++ +++|.+..-..
T Consensus 147 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~AtVtvchs~T-------------------------- 191 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSN---------IVGKPLAALLMQKHPDTNATVTLLHSQS-------------------------- 191 (287)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHhCcCCCCCEEEEeCCCC--------------------------
Confidence 33467899999999532 4678899999998 78999854321
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ----------~~l~~~~~~ADIvV~AvG~p~~i~--~~~i----k~GavVIDvG 229 (287)
T PRK14181 192 ----------ENLTEILKTADIIIAAIGVPLFIK--EEMI----AEKAVIVDVG 229 (287)
T ss_pred ----------CCHHHHHhhCCEEEEccCCcCccC--HHHc----CCCCEEEEec
Confidence 246777899999999999999844 3333 4456999975
No 485
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.85 E-value=0.069 Score=54.96 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCCC
Confidence 67899999999999999999998 99999999753
No 486
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.85 E-value=0.26 Score=51.96 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred eEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 326 KIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 326 ~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+|+|+| +. ..+..++..|.++|.+|.+||+..... +....+ ++.+.
T Consensus 2 kI~IIGG~G----------~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----------------------gv~~~ 49 (437)
T PRK08655 2 KISIIGGTG----------GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----------------------GVEYA 49 (437)
T ss_pred EEEEEecCC----------HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----------------------CCeec
Confidence 688886 42 467889999999999999999754321 121211 24456
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
.+..++++++|+|+++++-+...+ -.+++...+++..+|+|..++
T Consensus 50 ~~~~e~~~~aDvVIlavp~~~~~~-vl~~l~~~l~~~~iViDvsSv 94 (437)
T PRK08655 50 NDNIDAAKDADIVIISVPINVTED-VIKEVAPHVKEGSLLMDVTSV 94 (437)
T ss_pred cCHHHHhccCCEEEEecCHHHHHH-HHHHHHhhCCCCCEEEEcccc
Confidence 678888999999999998765543 235666667767799999875
No 487
>PRK08309 short chain dehydrogenase; Provisional
Probab=93.84 E-value=3.6 Score=37.66 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=34.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++.|+|...+|..++..|++. |++|++.++++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~--G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK--GFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--cCEEEEEECCHHHHHHHH
Confidence 7899999766777899999998 999999999988766554
No 488
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.80 E-value=0.11 Score=45.15 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
.||+|+|+|.+|..+|..|++. |. +++++|.+.=
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcce
Confidence 5899999999999999999998 76 7999998643
No 489
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=93.79 E-value=0.26 Score=50.16 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCChH--HHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCc
Q 011641 346 AIDVCKGLLGDKARLSIYDPQVTED--QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
...++..|.++|.+|.+||+.-..- +....+ ...++....+..++++++|+||++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l-------------------~~~Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKV-------------------EDAGVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHH-------------------HHCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence 4789999999999999999865421 011111 0134667778889999999999999977
Q ss_pred c-cccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 424 E-FKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
. .+++ ++.+...++...+|+|+..+-
T Consensus 93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~ 119 (342)
T PRK12557 93 KKTVEI-AKNILPHLPENAVICNTCTVS 119 (342)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence 6 3432 346667776667899987653
No 490
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=93.78 E-value=0.66 Score=44.44 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCcEEEEeccCCCCCCCCCCCCCCChHHHH
Q 011641 29 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (480)
Q Consensus 29 V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~ 107 (480)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|.|+..+
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~H---------------- 50 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEAV---------------- 50 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHHH----------------
Confidence 567999999988776521 134567788754 579999999876421
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCcch---HHHHHHHHHhcCCCCceEEe
Q 011641 108 SAARVIADVSKSDKIVVEKSTVPVKT---AEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 108 ~~~~~i~~~l~~~~iVi~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (480)
.+.....++.|+-|+..|.....+ .+++.+..++. |..+++.
T Consensus 51 --~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 51 --KEYAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred --HHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 223333444555454456543333 44455555554 3445554
No 491
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=93.78 E-value=0.66 Score=44.81 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=68.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHH---H---HhhhcCCCEEEecCH--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDG---V---VKQCRGKNLFFSTDV-- 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~---~---~~~~~~~~l~~t~d~-- 72 (480)
.+|.|||+|.+|.+.|.+|+.. |. .++++|-+.-....|++....-.+.|-.. . +.+++ ..+++..-.
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLN-P~V~V~~i~~r 103 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLN-PHVSVYDAVTK 103 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHC-CCcEEEEcccc
Confidence 3799999999999999999998 64 69999987766666655321111112111 1 11111 223322111
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
-+.....++++++..+ +++..+.+...++.-.+++..+|..+-|..
T Consensus 104 ld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~ 149 (287)
T PTZ00245 104 LDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA 149 (287)
T ss_pred cCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence 1123466777777542 355666776667767788888888766544
No 492
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.74 E-value=0.61 Score=49.33 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=57.8
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.+|+|||. |.+|..+..+|.+. || +|+.++...+.+ .++.+..++++.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~--gf~g~v~~Vnp~~~~i------------------------~G~~~~~sl~~l 61 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG--GYKGKIYPVNPKAGEI------------------------LGVKAYPSVLEI 61 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC--CCCCcEEEECCCCCcc------------------------CCccccCCHHHC
Confidence 47999999 88999999999987 77 565555432211 124555667775
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
-...|++++|+|.. .+..+++++... .-..+|++.|.++
T Consensus 62 p~~~Dlavi~vp~~---------------~~~~~l~e~~~~-gv~~~vi~s~gf~ 100 (447)
T TIGR02717 62 PDPVDLAVIVVPAK---------------YVPQVVEECGEK-GVKGAVVITAGFK 100 (447)
T ss_pred CCCCCEEEEecCHH---------------HHHHHHHHHHhc-CCCEEEEECCCcc
Confidence 56789999999842 345666666553 3345666666553
No 493
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.3 Score=48.45 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=0.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+....+ +.++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~---------------------------------t~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA---------------------------------TKDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||++|.+++.|.-- -...+++|.+||+.+.
T Consensus 205 ~~ADIvI~Avg~~~li--------------------~~~~vk~GavVIDVgi 236 (295)
T PRK14174 205 RQADILIAAIGKARFI--------------------TADMVKPGAVVIDVGI 236 (295)
T ss_pred HhCCEEEEecCccCcc--------------------CHHHcCCCCEEEEeec
No 494
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.71 E-value=0.24 Score=48.95 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-----
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV----- 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----- 76 (480)
.++|+|||.+|++.+.--...+ .-+++++|+|+++.+.-++ |-..+..|. .....+.|.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-------------d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-------------DLKKPIQEVIIEMTD 260 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-------------hccccHHHHHHHHhc
Confidence 6899999999999988776663 3589999999999888775 322222221 0011122222
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.+.|+-|-|+..
T Consensus 261 gGvDysfEc~G~ 272 (375)
T KOG0022|consen 261 GGVDYSFECIGN 272 (375)
T ss_pred CCceEEEEecCC
Confidence 478999999874
No 495
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.71 E-value=0.26 Score=49.39 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=62.0
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+.+|+|+|. .+.+..++..|.+.|.+|.+||....
T Consensus 4 ~m~I~iiG~----------G~~G~~lA~~l~~~G~~V~~~~r~~~----------------------------------- 38 (308)
T PRK14619 4 PKTIAILGA----------GAWGSTLAGLASANGHRVRVWSRRSG----------------------------------- 38 (308)
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------------
Confidence 468999998 46889999999999999999997421
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHH-hcCCCCEEEEcCCCCCh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYD-NMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~-~~~~~~~viD~~~~~~~ 452 (480)
.++.++++++|+|+++++.+..+++ .+.+.. .+++..+|+|+.+=+++
T Consensus 39 ~~~~~~~~~advvi~~vp~~~~~~v-~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSMKGVRPV-AEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred CCHHHHHhcCCEEEEECChHHHHHH-HHHHHHhcCCCCcEEEEeCCcccC
Confidence 2467788999999999998755543 244544 24555689998763443
No 496
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.51 Score=46.74 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=57.4
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
-.+++++|+|+|-+- --+.+++..|.++|++|.+++-..
T Consensus 155 i~l~Gk~vvViG~gg---------~vGkpia~~L~~~gatVtv~~~~t-------------------------------- 193 (283)
T PRK14192 155 IELAGKHAVVVGRSA---------ILGKPMAMMLLNANATVTICHSRT-------------------------------- 193 (283)
T ss_pred CCCCCCEEEEECCcH---------HHHHHHHHHHHhCCCEEEEEeCCc--------------------------------
Confidence 357899999999421 267899999999999999987521
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.+|..+.+ ++.+. +++..+|+|.-
T Consensus 194 ----~~L~~~~~~aDIvI~AtG~~~~--v~~~~----lk~gavViDvg 231 (283)
T PRK14192 194 ----QNLPELVKQADIIVGAVGKPEL--IKKDW----IKQGAVVVDAG 231 (283)
T ss_pred ----hhHHHHhccCCEEEEccCCCCc--CCHHH----cCCCCEEEEEE
Confidence 1345667899999999998875 44433 45556999975
No 497
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.70 E-value=0.11 Score=54.90 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=55.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCC-C-hHHHHhhhcCCCEEE--------ecC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-G-LDGVVKQCRGKNLFF--------STD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~-l~~~~~~~~~~~l~~--------t~d 71 (480)
.+|+|||.|--|++.|..|++. ||.|++|++.+.-.-.+.-|...+..+ . ++..+..+...++++ .-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 5899999999999999999999 999999998765444343332222211 1 112222111111322 234
Q ss_pred HHHhhccCcEEEEeccCCC
Q 011641 72 VEKHVSEADIVFVSVNTPT 90 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~ 90 (480)
.++..++.|.|++|+.+..
T Consensus 202 ~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 202 LEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHhhCEEEEeccccC
Confidence 5666677899999988754
No 498
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.67 E-value=0.61 Score=48.99 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=73.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.+.+++|+|+|.+ ..+..++..|...|+ +|.+++....... +...++ .
T Consensus 179 ~~~~~~vlViGaG----------~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------------------~ 228 (423)
T PRK00045 179 DLSGKKVLVIGAG----------EMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------------------G 228 (423)
T ss_pred CccCCEEEEECch----------HHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------------------C
Confidence 4678999999963 467888999999997 7999998654322 222221 0
Q ss_pred ceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhc----CCCCEEEEcCC--CCChhhhhhcCcEEEEe
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM----QKPAFVFDGRN--VVDANKLREIGFIVYSI 465 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~----~~~~~viD~~~--~~~~~~~~~~g~~y~~i 465 (480)
......++.+++.++|+||.+|..+.+- ++.+.+...+ ..|.+++|.-. =+++.-..-.|..++.+
T Consensus 229 ~~~~~~~~~~~l~~aDvVI~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~v 300 (423)
T PRK00045 229 EAIPLDELPEALAEADIVISSTGAPHPI-IGKGMVERALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDV 300 (423)
T ss_pred cEeeHHHHHHHhccCCEEEECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEH
Confidence 1111245677889999999999987754 4555555543 24679999975 24443222235555554
No 499
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.67 E-value=0.1 Score=52.35 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|+|||.|..|+++|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999986
No 500
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.66 E-value=0.087 Score=54.05 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|.+|++.|..|++. |++|+++|...
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 6899999999999999999999 89999999764
Done!