Query 011643
Match_columns 480
No_of_seqs 678 out of 3191
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.8E-62 2.1E-66 484.4 55.7 415 60-477 367-787 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.2E-61 9.1E-66 479.9 58.2 427 47-478 389-846 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-57 5.6E-62 450.4 44.9 412 47-475 142-559 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.1E-57 1.3E-61 458.2 45.9 407 48-471 207-652 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.6E-56 5.7E-61 443.2 47.6 413 49-476 108-526 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 7.3E-56 1.6E-60 450.3 45.8 418 48-477 172-623 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-27 1.1E-31 244.5 52.3 400 62-471 464-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-26 5.8E-31 239.0 53.3 397 69-475 437-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 3.3E-22 7.1E-27 187.1 34.5 301 106-445 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.5E-22 1.6E-26 184.7 34.9 292 176-473 45-347 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.2E-20 2.7E-25 184.9 43.9 318 79-403 60-381 (656)
12 KOG4626 O-linked N-acetylgluco 99.9 7.7E-22 1.7E-26 176.9 32.0 371 95-476 114-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-19 6E-24 176.1 51.8 389 79-475 145-573 (615)
14 PRK11447 cellulose synthase su 99.9 7E-20 1.5E-24 191.8 49.8 382 79-472 287-739 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 3.7E-20 8.1E-25 181.5 42.7 335 98-439 43-382 (656)
16 PRK10049 pgaA outer membrane p 99.9 2.7E-19 5.8E-24 179.3 48.7 408 58-476 10-459 (765)
17 PRK11447 cellulose synthase su 99.9 6E-19 1.3E-23 184.9 50.3 367 103-475 275-702 (1157)
18 KOG4626 O-linked N-acetylgluco 99.9 3.2E-20 6.9E-25 166.6 34.5 381 63-455 116-501 (966)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-17 6E-22 161.9 47.7 369 99-476 129-540 (615)
20 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 168.1 44.1 377 93-477 11-426 (765)
21 PRK14574 hmsH outer membrane p 99.9 4.6E-16 1E-20 153.3 48.8 403 68-477 73-517 (822)
22 PRK14574 hmsH outer membrane p 99.8 8.5E-16 1.9E-20 151.4 47.0 392 78-477 51-483 (822)
23 KOG4422 Uncharacterized conser 99.8 2.7E-15 5.9E-20 129.5 41.8 398 38-439 122-591 (625)
24 KOG2002 TPR-containing nuclear 99.8 9.5E-16 2.1E-20 145.2 37.7 394 79-477 254-749 (1018)
25 PRK09782 bacteriophage N4 rece 99.8 4E-14 8.6E-19 142.7 50.6 189 282-476 521-709 (987)
26 PRK09782 bacteriophage N4 rece 99.8 2.9E-14 6.4E-19 143.6 46.3 356 109-475 354-742 (987)
27 KOG2003 TPR repeat-containing 99.8 5.9E-16 1.3E-20 134.6 28.4 403 62-471 200-687 (840)
28 KOG4422 Uncharacterized conser 99.8 2.5E-13 5.5E-18 117.6 40.6 400 66-472 119-589 (625)
29 KOG0495 HAT repeat protein [RN 99.7 5.4E-13 1.2E-17 121.5 42.0 410 52-476 468-883 (913)
30 KOG2076 RNA polymerase III tra 99.7 1.2E-13 2.6E-18 130.3 38.0 317 79-399 157-508 (895)
31 PRK10747 putative protoheme IX 99.7 5E-14 1.1E-18 130.6 34.1 281 144-435 97-387 (398)
32 KOG2076 RNA polymerase III tra 99.7 4.5E-13 9.8E-18 126.5 39.7 366 103-471 145-553 (895)
33 TIGR00540 hemY_coli hemY prote 99.7 5.3E-14 1.2E-18 131.2 32.9 120 143-265 96-217 (409)
34 PRK10747 putative protoheme IX 99.7 1.8E-13 3.9E-18 127.0 35.9 286 179-474 97-391 (398)
35 TIGR00540 hemY_coli hemY prote 99.7 1.4E-13 3E-18 128.5 33.1 290 179-470 97-396 (409)
36 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 4E-21 140.5 12.3 257 173-435 15-274 (280)
37 PF13429 TPR_15: Tetratricopep 99.7 2E-16 4.3E-21 140.3 12.3 262 205-472 13-276 (280)
38 KOG1915 Cell cycle control pro 99.7 6.5E-12 1.4E-16 110.4 39.6 388 79-475 91-538 (677)
39 KOG0495 HAT repeat protein [RN 99.7 7.6E-12 1.6E-16 114.2 39.5 389 79-476 424-849 (913)
40 KOG2002 TPR-containing nuclear 99.7 9.5E-12 2.1E-16 118.6 41.2 317 79-401 148-479 (1018)
41 COG3071 HemY Uncharacterized e 99.7 2E-12 4.3E-17 111.5 33.0 290 144-442 97-394 (400)
42 KOG1155 Anaphase-promoting com 99.7 7.4E-12 1.6E-16 109.7 36.7 358 95-468 162-531 (559)
43 KOG1126 DNA-binding cell divis 99.7 5E-14 1.1E-18 128.7 24.3 285 182-475 335-622 (638)
44 KOG2003 TPR repeat-containing 99.7 6.1E-13 1.3E-17 116.1 29.1 374 79-459 255-709 (840)
45 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.4E-18 125.5 24.7 287 145-444 333-626 (638)
46 COG2956 Predicted N-acetylgluc 99.6 1.3E-12 2.9E-17 109.1 27.4 291 111-437 49-346 (389)
47 KOG1155 Anaphase-promoting com 99.6 3.8E-11 8.3E-16 105.4 36.7 314 137-475 233-555 (559)
48 COG2956 Predicted N-acetylgluc 99.6 7.5E-12 1.6E-16 104.7 30.6 304 57-368 31-346 (389)
49 COG3071 HemY Uncharacterized e 99.6 7.6E-11 1.6E-15 101.9 36.5 299 103-408 88-395 (400)
50 KOG0547 Translocase of outer m 99.6 2.7E-11 5.8E-16 107.0 33.0 225 245-474 336-567 (606)
51 KOG1915 Cell cycle control pro 99.6 5.1E-10 1.1E-14 98.7 38.4 372 95-475 71-468 (677)
52 KOG0547 Translocase of outer m 99.5 4.6E-10 9.9E-15 99.4 35.0 350 79-437 133-565 (606)
53 PRK12370 invasion protein regu 99.5 5.8E-11 1.3E-15 115.2 29.9 249 182-438 277-535 (553)
54 PRK12370 invasion protein regu 99.5 6.8E-11 1.5E-15 114.7 29.6 266 95-368 254-534 (553)
55 KOG1173 Anaphase-promoting com 99.5 9.2E-10 2E-14 99.3 33.7 286 163-455 241-533 (611)
56 TIGR02521 type_IV_pilW type IV 99.5 7.7E-11 1.7E-15 101.9 26.8 198 272-473 33-232 (234)
57 TIGR02521 type_IV_pilW type IV 99.5 4.5E-11 9.8E-16 103.4 25.0 164 97-262 31-196 (234)
58 KOG4318 Bicoid mRNA stability 99.5 1.3E-11 2.8E-16 116.5 21.1 272 153-459 12-286 (1088)
59 PF12569 NARP1: NMDA receptor- 99.5 8.5E-10 1.8E-14 103.6 32.8 293 103-402 10-333 (517)
60 KOG1156 N-terminal acetyltrans 99.4 5.4E-09 1.2E-13 96.0 36.4 101 371-474 366-469 (700)
61 PF12569 NARP1: NMDA receptor- 99.4 9.7E-10 2.1E-14 103.2 32.2 293 135-435 8-331 (517)
62 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.2E-16 101.9 19.0 228 204-437 227-457 (478)
63 KOG1173 Anaphase-promoting com 99.4 5.9E-10 1.3E-14 100.6 27.9 285 130-420 243-533 (611)
64 KOG1129 TPR repeat-containing 99.4 3.4E-11 7.4E-16 101.0 18.8 231 169-404 226-459 (478)
65 KOG1840 Kinesin light chain [C 99.4 2.5E-10 5.5E-15 105.7 26.2 240 235-474 199-480 (508)
66 KOG2047 mRNA splicing factor [ 99.4 5.5E-08 1.2E-12 89.4 38.9 29 132-160 249-277 (835)
67 KOG1174 Anaphase-promoting com 99.4 1.2E-07 2.6E-12 82.7 38.5 289 179-476 209-503 (564)
68 KOG4162 Predicted calmodulin-b 99.4 1.3E-07 2.8E-12 88.9 41.6 132 343-476 653-786 (799)
69 KOG4318 Bicoid mRNA stability 99.4 3.7E-10 7.9E-15 106.9 24.2 345 89-457 17-392 (1088)
70 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.6E-13 87.9 30.9 269 129-404 230-501 (564)
71 KOG3785 Uncharacterized conser 99.3 1.8E-08 4E-13 85.9 30.5 380 79-477 40-494 (557)
72 KOG2047 mRNA splicing factor [ 99.3 4.6E-07 9.9E-12 83.6 41.0 383 82-471 123-613 (835)
73 PF13041 PPR_2: PPR repeat fam 99.3 4.7E-12 1E-16 78.8 5.6 50 198-247 1-50 (50)
74 KOG1156 N-terminal acetyltrans 99.3 9E-08 1.9E-12 88.2 34.7 381 79-472 59-510 (700)
75 COG3063 PilF Tfp pilus assembl 99.3 7.4E-09 1.6E-13 83.2 24.0 189 241-432 41-230 (250)
76 cd05804 StaR_like StaR_like; a 99.3 8.7E-08 1.9E-12 88.6 35.0 199 97-297 6-213 (355)
77 COG3063 PilF Tfp pilus assembl 99.3 9.4E-09 2E-13 82.6 24.0 197 99-298 37-235 (250)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 76.2 6.6 49 407-455 1-49 (50)
79 KOG1840 Kinesin light chain [C 99.3 5.6E-09 1.2E-13 96.9 25.7 197 240-436 246-477 (508)
80 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3E-13 90.4 26.5 226 214-448 40-274 (296)
81 KOG4340 Uncharacterized conser 99.2 1.2E-08 2.5E-13 85.1 23.1 328 99-436 12-373 (459)
82 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3.1E-13 90.3 25.9 93 134-227 67-159 (296)
83 KOG4340 Uncharacterized conser 99.2 3.8E-08 8.3E-13 82.0 25.9 398 57-472 4-442 (459)
84 cd05804 StaR_like StaR_like; a 99.2 2.1E-07 4.5E-12 86.1 34.5 305 130-437 5-335 (355)
85 KOG0548 Molecular co-chaperone 99.2 1.2E-07 2.5E-12 85.7 28.8 365 79-455 20-470 (539)
86 KOG2376 Signal recognition par 99.1 3.4E-06 7.4E-11 77.3 36.3 108 79-195 30-139 (652)
87 PRK04841 transcriptional regul 99.1 1.2E-06 2.7E-11 91.6 37.0 338 139-476 382-763 (903)
88 PF04733 Coatomer_E: Coatomer 99.1 9.2E-09 2E-13 90.1 17.5 69 321-390 183-251 (290)
89 PF04733 Coatomer_E: Coatomer 99.1 1.9E-08 4.2E-13 88.1 18.7 247 177-438 12-265 (290)
90 KOG0548 Molecular co-chaperone 99.1 2.4E-06 5.1E-11 77.5 31.6 320 95-420 68-470 (539)
91 KOG4162 Predicted calmodulin-b 99.0 1.6E-06 3.6E-11 81.8 30.9 311 114-438 461-783 (799)
92 KOG3785 Uncharacterized conser 99.0 1.6E-06 3.5E-11 74.3 27.4 349 104-470 29-454 (557)
93 KOG0624 dsRNA-activated protei 99.0 9.3E-06 2E-10 69.5 32.8 303 96-404 37-371 (504)
94 KOG1128 Uncharacterized conser 99.0 1.4E-07 3.1E-12 88.2 21.7 218 239-476 402-619 (777)
95 PRK04841 transcriptional regul 99.0 6.5E-06 1.4E-10 86.3 36.6 333 107-439 384-761 (903)
96 KOG1125 TPR repeat-containing 99.0 1.8E-07 3.9E-12 85.3 20.7 250 208-466 293-564 (579)
97 KOG1914 mRNA cleavage and poly 98.9 3.4E-05 7.4E-10 70.3 35.7 407 60-472 17-500 (656)
98 PLN02789 farnesyltranstransfer 98.9 1.9E-06 4.2E-11 76.6 26.1 207 107-317 47-267 (320)
99 KOG0985 Vesicle coat protein c 98.9 2E-05 4.3E-10 76.9 34.0 220 201-456 1105-1325(1666)
100 KOG0624 dsRNA-activated protei 98.9 2.2E-05 4.8E-10 67.3 30.5 303 130-439 37-371 (504)
101 KOG2376 Signal recognition par 98.9 5.1E-05 1.1E-09 69.9 38.6 352 106-470 88-517 (652)
102 KOG1125 TPR repeat-containing 98.9 5.3E-07 1.1E-11 82.3 21.2 248 142-395 296-563 (579)
103 KOG1128 Uncharacterized conser 98.9 2.6E-07 5.6E-12 86.5 19.4 234 201-454 399-633 (777)
104 KOG1070 rRNA processing protei 98.9 1.9E-06 4.1E-11 86.5 26.2 227 235-465 1458-1692(1710)
105 PLN02789 farnesyltranstransfer 98.9 4.7E-06 1E-10 74.2 26.2 204 179-386 50-267 (320)
106 KOG1127 TPR repeat-containing 98.9 1.1E-05 2.4E-10 78.5 29.4 143 323-468 801-947 (1238)
107 KOG1070 rRNA processing protei 98.9 3.6E-06 7.8E-11 84.5 26.7 248 186-436 1444-1698(1710)
108 KOG3617 WD40 and TPR repeat-co 98.8 4.1E-05 8.9E-10 73.2 30.7 211 96-332 756-994 (1416)
109 KOG0985 Vesicle coat protein c 98.8 0.00011 2.4E-09 71.9 34.1 267 165-473 1103-1370(1666)
110 KOG3617 WD40 and TPR repeat-co 98.8 7.3E-06 1.6E-10 78.1 25.3 330 95-472 724-1108(1416)
111 KOG3081 Vesicle coat complex C 98.8 9E-06 2E-10 67.2 22.8 249 139-402 16-270 (299)
112 PRK14720 transcript cleavage f 98.8 4.7E-06 1E-10 82.7 25.0 238 129-420 29-268 (906)
113 TIGR03302 OM_YfiO outer membra 98.8 1.2E-06 2.6E-11 75.7 18.9 187 94-299 30-232 (235)
114 COG5010 TadD Flp pilus assembl 98.8 4.7E-06 1E-10 68.9 20.6 158 101-260 70-227 (257)
115 PRK10370 formate-dependent nit 98.8 3.8E-06 8.3E-11 69.5 20.7 154 277-445 23-179 (198)
116 KOG3616 Selective LIM binding 98.8 8E-06 1.7E-10 76.9 24.5 172 240-435 737-908 (1636)
117 KOG1127 TPR repeat-containing 98.8 1.5E-05 3.2E-10 77.7 26.9 180 113-297 474-657 (1238)
118 COG5010 TadD Flp pilus assembl 98.8 3.1E-06 6.7E-11 69.9 19.2 170 125-298 61-230 (257)
119 KOG2053 Mitochondrial inherita 98.7 0.0003 6.4E-09 68.3 40.4 212 50-265 32-256 (932)
120 TIGR03302 OM_YfiO outer membra 98.7 3E-06 6.5E-11 73.2 19.5 185 129-334 31-232 (235)
121 PRK14720 transcript cleavage f 98.7 9.4E-06 2E-10 80.7 24.7 241 94-385 28-268 (906)
122 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.1E-13 55.0 4.1 32 404-435 2-33 (34)
123 PRK15359 type III secretion sy 98.7 2.4E-06 5.3E-11 66.8 15.8 107 99-206 26-132 (144)
124 PF12854 PPR_1: PPR repeat 98.7 4.2E-08 9.1E-13 54.6 4.1 32 230-261 2-33 (34)
125 PRK15179 Vi polysaccharide bio 98.7 1.5E-05 3.2E-10 78.5 24.3 147 301-451 82-229 (694)
126 PRK10370 formate-dependent nit 98.6 1.9E-06 4E-11 71.4 15.3 119 110-229 52-173 (198)
127 KOG3081 Vesicle coat complex C 98.6 2.6E-05 5.6E-10 64.6 20.8 249 174-437 16-270 (299)
128 KOG3616 Selective LIM binding 98.6 0.00019 4.2E-09 68.0 29.0 110 173-294 739-848 (1636)
129 PRK15359 type III secretion sy 98.6 6.1E-06 1.3E-10 64.6 16.7 95 343-438 27-121 (144)
130 PRK15179 Vi polysaccharide bio 98.6 8E-06 1.7E-10 80.3 20.7 136 93-229 82-217 (694)
131 COG4783 Putative Zn-dependent 98.6 9.7E-05 2.1E-09 66.8 24.6 149 278-448 314-463 (484)
132 KOG1914 mRNA cleavage and poly 98.5 0.00076 1.6E-08 61.9 33.3 374 95-473 18-464 (656)
133 COG4783 Putative Zn-dependent 98.5 7.4E-05 1.6E-09 67.5 21.9 181 250-436 252-435 (484)
134 TIGR02552 LcrH_SycD type III s 98.5 7.2E-06 1.6E-10 63.8 14.1 94 134-228 20-113 (135)
135 TIGR02552 LcrH_SycD type III s 98.5 1.3E-05 2.7E-10 62.5 15.0 97 341-438 18-114 (135)
136 KOG3060 Uncharacterized conser 98.5 0.00018 3.9E-09 59.3 21.3 163 134-299 55-220 (289)
137 KOG3060 Uncharacterized conser 98.4 0.00012 2.5E-09 60.4 19.0 169 95-265 49-221 (289)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.2E-05 9.1E-10 69.6 17.5 124 274-402 173-296 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.8E-05 8.2E-10 69.9 15.7 125 238-368 172-296 (395)
140 KOG2053 Mitochondrial inherita 98.3 0.0053 1.1E-07 60.0 42.5 61 346-406 442-505 (932)
141 PF09976 TPR_21: Tetratricopep 98.2 7E-05 1.5E-09 58.9 14.2 115 179-295 24-143 (145)
142 PF09976 TPR_21: Tetratricopep 98.2 0.00018 4E-09 56.5 16.2 115 353-469 24-143 (145)
143 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 47.3 4.0 33 202-234 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 46.4 4.5 33 411-443 2-34 (35)
145 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00019 4.1E-09 54.3 13.0 100 100-199 5-109 (119)
146 PF13812 PPR_3: Pentatricopept 98.0 7.8E-06 1.7E-10 45.8 3.9 33 201-233 2-34 (34)
147 PF10037 MRP-S27: Mitochondria 98.0 9.8E-05 2.1E-09 67.6 12.5 121 337-457 63-186 (429)
148 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.7E-10 45.0 4.4 32 411-442 3-34 (34)
149 PF05843 Suf: Suppressor of fo 98.0 0.00012 2.7E-09 64.4 12.8 130 98-228 2-135 (280)
150 cd00189 TPR Tetratricopeptide 98.0 0.00014 3E-09 52.2 11.3 92 101-193 4-95 (100)
151 PF14938 SNAP: Soluble NSF att 98.0 0.0006 1.3E-08 60.4 16.9 125 349-473 123-266 (282)
152 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.5E-09 51.9 11.2 87 382-470 8-94 (100)
153 PLN03088 SGT1, suppressor of 98.0 0.00033 7.2E-09 64.1 15.2 88 349-437 11-98 (356)
154 PF10037 MRP-S27: Mitochondria 98.0 0.00022 4.7E-09 65.4 13.7 122 161-282 61-185 (429)
155 KOG0550 Molecular chaperone (D 97.9 0.013 2.7E-07 52.4 23.6 159 243-404 177-351 (486)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00046 1E-08 52.1 13.2 96 343-438 5-105 (119)
157 KOG0553 TPR repeat-containing 97.9 0.00018 4E-09 61.0 11.3 98 314-414 90-187 (304)
158 PF05843 Suf: Suppressor of fo 97.9 0.00024 5.2E-09 62.6 12.7 142 306-451 2-147 (280)
159 PF08579 RPM2: Mitochondrial r 97.9 0.00034 7.3E-09 50.1 10.7 79 378-456 29-116 (120)
160 KOG2041 WD40 repeat protein [G 97.9 0.024 5.2E-07 54.1 28.1 177 95-294 690-876 (1189)
161 PRK15363 pathogenicity island 97.9 0.0011 2.4E-08 51.3 14.3 91 346-437 41-131 (157)
162 PRK15363 pathogenicity island 97.8 0.00096 2.1E-08 51.6 13.0 98 96-194 34-131 (157)
163 PLN03088 SGT1, suppressor of 97.8 0.00063 1.4E-08 62.3 14.3 97 104-201 9-105 (356)
164 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.7E-09 49.4 10.1 73 279-351 34-115 (120)
165 PRK10866 outer membrane biogen 97.8 0.018 4E-07 49.5 22.7 65 96-160 31-98 (243)
166 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.9E-10 42.2 3.4 29 202-230 2-30 (31)
167 PRK10866 outer membrane biogen 97.8 0.01 2.2E-07 51.1 20.2 53 177-229 43-98 (243)
168 PF12895 Apc3: Anaphase-promot 97.8 5.2E-05 1.1E-09 53.1 5.2 79 354-434 3-83 (84)
169 PRK02603 photosystem I assembl 97.8 0.0021 4.6E-08 52.2 15.3 83 133-215 37-121 (172)
170 PRK02603 photosystem I assembl 97.8 0.0024 5.2E-08 51.9 15.3 88 307-394 37-126 (172)
171 PRK10153 DNA-binding transcrip 97.7 0.0027 5.9E-08 60.8 17.7 142 300-447 332-489 (517)
172 PF12895 Apc3: Anaphase-promot 97.7 7.7E-05 1.7E-09 52.2 5.5 80 319-399 3-83 (84)
173 PRK10153 DNA-binding transcrip 97.7 0.0034 7.3E-08 60.2 18.1 140 335-476 332-485 (517)
174 CHL00033 ycf3 photosystem I as 97.7 0.001 2.2E-08 53.8 12.2 79 133-211 37-117 (168)
175 PF14938 SNAP: Soluble NSF att 97.7 0.011 2.3E-07 52.4 19.4 89 245-334 124-225 (282)
176 PF12688 TPR_5: Tetratrico pep 97.7 0.0023 5E-08 47.7 12.6 90 138-227 8-102 (120)
177 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.9E-08 53.2 12.5 79 307-385 37-117 (168)
178 COG4235 Cytochrome c biogenesi 97.7 0.0039 8.3E-08 53.5 15.3 100 339-439 155-257 (287)
179 PF01535 PPR: PPR repeat; Int 97.7 7.4E-05 1.6E-09 40.7 3.6 29 411-439 2-30 (31)
180 COG4235 Cytochrome c biogenesi 97.6 0.0035 7.7E-08 53.7 14.8 111 118-229 143-256 (287)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00029 6.4E-09 46.9 6.9 53 352-404 3-55 (68)
182 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.047 1E-06 49.5 32.4 131 341-475 398-533 (660)
183 PF04840 Vps16_C: Vps16, C-ter 97.6 0.049 1.1E-06 48.7 24.8 105 309-432 181-285 (319)
184 KOG0550 Molecular chaperone (D 97.6 0.012 2.6E-07 52.5 17.4 298 133-457 51-370 (486)
185 COG4700 Uncharacterized protei 97.6 0.011 2.3E-07 46.8 15.0 131 95-226 87-219 (251)
186 KOG1538 Uncharacterized conser 97.6 0.045 9.7E-07 51.9 21.6 100 306-439 748-847 (1081)
187 PF14559 TPR_19: Tetratricopep 97.6 0.00038 8.2E-09 46.4 6.6 53 108-160 2-54 (68)
188 PF12688 TPR_5: Tetratrico pep 97.5 0.0087 1.9E-07 44.7 14.2 16 318-333 14-29 (120)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00061 1.3E-08 44.9 7.1 57 104-160 4-60 (65)
190 KOG0553 TPR repeat-containing 97.5 0.0023 5E-08 54.5 11.7 89 106-195 90-178 (304)
191 KOG1130 Predicted G-alpha GTPa 97.5 0.0015 3.3E-08 57.8 10.9 131 343-473 198-344 (639)
192 PF13414 TPR_11: TPR repeat; P 97.5 0.00089 1.9E-08 44.7 7.5 65 409-474 3-68 (69)
193 PF13432 TPR_16: Tetratricopep 97.4 0.00067 1.4E-08 44.7 6.6 56 381-437 4-59 (65)
194 PF06239 ECSIT: Evolutionarily 97.4 0.0043 9.4E-08 50.5 12.1 88 372-459 45-153 (228)
195 PF07079 DUF1347: Protein of u 97.4 0.09 2E-06 47.8 36.0 386 79-471 24-522 (549)
196 KOG1258 mRNA processing protei 97.4 0.12 2.7E-06 48.8 29.7 134 95-229 43-180 (577)
197 KOG2796 Uncharacterized conser 97.4 0.066 1.4E-06 45.0 20.9 133 272-404 179-316 (366)
198 PF13414 TPR_11: TPR repeat; P 97.4 0.00099 2.2E-08 44.5 6.8 64 96-159 2-66 (69)
199 KOG1130 Predicted G-alpha GTPa 97.4 0.0028 6.1E-08 56.3 10.9 283 139-437 25-343 (639)
200 KOG2796 Uncharacterized conser 97.3 0.076 1.6E-06 44.6 19.2 140 306-448 178-323 (366)
201 PF06239 ECSIT: Evolutionarily 97.3 0.0072 1.6E-07 49.3 12.0 104 198-320 45-153 (228)
202 PF13525 YfiO: Outer membrane 97.3 0.036 7.7E-07 46.4 17.0 61 100-160 8-71 (203)
203 COG4700 Uncharacterized protei 97.3 0.062 1.3E-06 42.6 17.9 130 303-434 87-218 (251)
204 PRK15331 chaperone protein Sic 97.2 0.036 7.9E-07 43.3 14.5 87 350-437 47-133 (165)
205 PF13525 YfiO: Outer membrane 97.2 0.097 2.1E-06 43.8 18.5 49 415-464 147-198 (203)
206 PF03704 BTAD: Bacterial trans 97.2 0.016 3.5E-07 45.5 12.9 71 376-447 64-139 (146)
207 PRK10803 tol-pal system protei 97.2 0.012 2.6E-07 51.1 12.9 95 100-194 146-245 (263)
208 PRK15331 chaperone protein Sic 97.2 0.04 8.8E-07 43.1 14.2 90 313-403 45-134 (165)
209 PF03704 BTAD: Bacterial trans 97.1 0.0071 1.5E-07 47.6 10.2 71 99-169 64-139 (146)
210 PF13371 TPR_9: Tetratricopept 97.0 0.0054 1.2E-07 41.4 7.8 54 383-437 4-57 (73)
211 PF04840 Vps16_C: Vps16, C-ter 97.0 0.23 4.9E-06 44.6 23.9 111 340-469 177-287 (319)
212 PRK10803 tol-pal system protei 97.0 0.024 5.3E-07 49.2 13.1 87 316-402 154-245 (263)
213 KOG2041 WD40 repeat protein [G 97.0 0.39 8.4E-06 46.4 26.2 286 110-427 747-1075(1189)
214 PF13281 DUF4071: Domain of un 97.0 0.27 6E-06 44.6 19.7 167 271-438 142-334 (374)
215 COG3898 Uncharacterized membra 96.9 0.28 6E-06 43.9 33.0 120 312-439 270-393 (531)
216 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.32 6.8E-06 44.4 26.0 377 79-468 27-490 (660)
217 COG3898 Uncharacterized membra 96.9 0.32 6.9E-06 43.6 29.6 287 178-477 96-396 (531)
218 PF13371 TPR_9: Tetratricopept 96.8 0.012 2.6E-07 39.7 7.9 57 105-161 3-59 (73)
219 PF08631 SPO22: Meiosis protei 96.7 0.37 8E-06 42.6 24.1 163 306-470 85-272 (278)
220 PF08631 SPO22: Meiosis protei 96.7 0.4 8.7E-06 42.4 25.7 122 108-229 4-150 (278)
221 KOG1585 Protein required for f 96.6 0.29 6.3E-06 40.8 15.3 53 413-466 194-249 (308)
222 KOG1538 Uncharacterized conser 96.5 0.69 1.5E-05 44.3 19.4 128 242-403 710-846 (1081)
223 PF10300 DUF3808: Protein of u 96.5 0.23 5.1E-06 47.4 17.1 121 353-474 246-377 (468)
224 PF13424 TPR_12: Tetratricopep 96.5 0.01 2.2E-07 40.7 5.9 63 411-473 7-75 (78)
225 PF09205 DUF1955: Domain of un 96.5 0.23 5E-06 37.0 13.5 62 343-404 89-150 (161)
226 KOG2280 Vacuolar assembly/sort 96.5 0.98 2.1E-05 44.2 33.5 114 337-468 681-794 (829)
227 PF13281 DUF4071: Domain of un 96.5 0.67 1.4E-05 42.2 20.7 166 237-404 143-335 (374)
228 PF12921 ATP13: Mitochondrial 96.5 0.065 1.4E-06 40.5 10.5 47 371-417 49-96 (126)
229 PF12921 ATP13: Mitochondrial 96.4 0.084 1.8E-06 39.8 11.0 55 403-457 46-101 (126)
230 PF13512 TPR_18: Tetratricopep 96.4 0.1 2.2E-06 39.8 11.3 82 97-178 10-94 (142)
231 PF10300 DUF3808: Protein of u 96.4 0.2 4.3E-06 47.9 15.8 178 149-333 175-375 (468)
232 COG4105 ComL DNA uptake lipopr 96.4 0.51 1.1E-05 40.0 19.9 182 98-299 36-233 (254)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.12 2.7E-06 47.5 13.5 67 94-160 72-141 (453)
234 PF13424 TPR_12: Tetratricopep 96.4 0.012 2.6E-07 40.3 5.7 61 376-436 7-73 (78)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.11 2.4E-06 47.8 13.1 65 339-403 74-141 (453)
236 smart00299 CLH Clathrin heavy 96.3 0.28 6.2E-06 38.1 13.9 40 104-143 14-53 (140)
237 PF04053 Coatomer_WDAD: Coatom 96.1 0.2 4.3E-06 47.2 14.1 73 177-263 329-401 (443)
238 COG3118 Thioredoxin domain-con 96.1 0.79 1.7E-05 39.7 17.1 121 106-227 143-263 (304)
239 PF04053 Coatomer_WDAD: Coatom 96.1 0.2 4.4E-06 47.1 13.9 158 244-434 270-427 (443)
240 KOG0543 FKBP-type peptidyl-pro 96.0 0.18 3.9E-06 45.4 12.4 94 376-472 259-354 (397)
241 KOG0543 FKBP-type peptidyl-pro 96.0 0.14 3E-06 46.1 11.4 95 341-437 258-354 (397)
242 KOG4555 TPR repeat-containing 95.9 0.22 4.8E-06 37.0 10.4 91 349-440 52-146 (175)
243 COG3118 Thioredoxin domain-con 95.9 1 2.2E-05 39.0 16.0 49 178-226 146-194 (304)
244 COG1729 Uncharacterized protei 95.9 0.2 4.3E-06 42.8 11.5 97 99-196 144-245 (262)
245 PRK11906 transcriptional regul 95.8 0.58 1.3E-05 43.4 15.1 78 358-436 322-399 (458)
246 PRK11906 transcriptional regul 95.8 0.95 2.1E-05 42.0 16.1 81 147-228 320-400 (458)
247 KOG1258 mRNA processing protei 95.7 2 4.4E-05 41.0 32.7 185 269-458 296-489 (577)
248 PF13428 TPR_14: Tetratricopep 95.7 0.04 8.7E-07 32.6 5.0 28 133-160 3-30 (44)
249 PF07079 DUF1347: Protein of u 95.7 1.8 3.8E-05 39.9 33.6 121 320-449 395-530 (549)
250 KOG2114 Vacuolar assembly/sort 95.7 1.4 3.1E-05 43.7 17.5 139 245-400 378-516 (933)
251 COG1729 Uncharacterized protei 95.6 0.28 6E-06 41.9 11.2 96 342-438 144-244 (262)
252 KOG1920 IkappaB kinase complex 95.5 3.6 7.9E-05 42.8 24.1 25 203-227 793-819 (1265)
253 KOG2610 Uncharacterized conser 95.5 1.1 2.4E-05 39.4 14.7 152 142-295 114-272 (491)
254 PF13428 TPR_14: Tetratricopep 95.4 0.074 1.6E-06 31.5 5.5 27 377-403 4-30 (44)
255 KOG3941 Intermediate in Toll s 95.4 0.52 1.1E-05 40.3 12.0 84 390-473 88-188 (406)
256 COG3629 DnrI DNA-binding trans 95.2 0.31 6.8E-06 42.3 10.7 77 99-175 155-236 (280)
257 COG4105 ComL DNA uptake lipopr 95.2 1.7 3.7E-05 36.9 19.2 21 382-402 175-195 (254)
258 smart00299 CLH Clathrin heavy 95.1 1.2 2.6E-05 34.6 16.3 83 276-366 13-95 (140)
259 PF02259 FAT: FAT domain; Int 95.0 2.8 6.1E-05 38.6 17.9 62 410-471 147-211 (352)
260 KOG1920 IkappaB kinase complex 95.0 5.4 0.00012 41.6 24.4 107 312-435 946-1052(1265)
261 KOG2610 Uncharacterized conser 95.0 1.1 2.4E-05 39.4 13.1 155 106-261 112-273 (491)
262 COG0457 NrfG FOG: TPR repeat [ 94.9 2.1 4.5E-05 36.3 28.5 87 350-437 177-264 (291)
263 PF09613 HrpB1_HrpK: Bacterial 94.9 1.5 3.2E-05 34.4 13.0 52 352-403 22-73 (160)
264 PF13512 TPR_18: Tetratricopep 94.8 1 2.3E-05 34.5 11.4 71 350-420 20-93 (142)
265 COG0457 NrfG FOG: TPR repeat [ 94.8 2.2 4.7E-05 36.1 29.9 225 249-475 37-267 (291)
266 COG3629 DnrI DNA-binding trans 94.8 0.51 1.1E-05 41.0 10.9 76 376-452 155-235 (280)
267 KOG3941 Intermediate in Toll s 94.8 0.68 1.5E-05 39.6 11.1 116 197-331 64-185 (406)
268 KOG4555 TPR repeat-containing 94.8 0.72 1.6E-05 34.4 9.8 89 106-194 52-143 (175)
269 KOG1941 Acetylcholine receptor 94.5 2.3 5.1E-05 37.9 14.1 200 97-297 43-273 (518)
270 KOG2114 Vacuolar assembly/sort 94.5 5.8 0.00013 39.7 21.4 143 104-262 375-517 (933)
271 PF04184 ST7: ST7 protein; In 94.4 4.5 9.8E-05 38.0 18.0 63 340-402 259-323 (539)
272 PF09205 DUF1955: Domain of un 94.4 1.6 3.5E-05 32.7 13.0 136 282-441 14-152 (161)
273 PF13170 DUF4003: Protein of u 94.2 3.9 8.5E-05 36.4 20.6 127 287-415 79-223 (297)
274 KOG1941 Acetylcholine receptor 94.1 1.9 4.2E-05 38.4 12.8 126 275-400 127-272 (518)
275 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.33 7.2E-06 33.9 6.3 62 147-208 23-84 (103)
276 KOG1585 Protein required for f 93.9 3.4 7.5E-05 34.8 18.0 209 95-328 29-250 (308)
277 PF13170 DUF4003: Protein of u 93.8 4.6 0.0001 35.9 21.1 128 147-276 78-223 (297)
278 PF02284 COX5A: Cytochrome c o 93.8 0.32 7E-06 34.4 6.1 60 149-208 28-87 (108)
279 PF10602 RPN7: 26S proteasome 93.7 3.2 6.9E-05 33.7 13.3 96 97-194 36-141 (177)
280 PF13176 TPR_7: Tetratricopept 93.6 0.13 2.8E-06 28.8 3.4 23 412-434 2-24 (36)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.69 1.5E-05 32.4 7.2 61 321-381 23-83 (103)
282 KOG4570 Uncharacterized conser 93.4 2.3 4.9E-05 37.2 11.7 99 337-437 61-163 (418)
283 PF13431 TPR_17: Tetratricopep 93.3 0.13 2.8E-06 28.4 3.0 30 365-394 4-33 (34)
284 TIGR02561 HrpB1_HrpK type III 93.3 3 6.5E-05 32.2 11.5 49 318-368 23-72 (153)
285 PF13431 TPR_17: Tetratricopep 93.1 0.14 3E-06 28.2 2.9 23 128-150 10-32 (34)
286 COG4649 Uncharacterized protei 92.9 4 8.6E-05 32.4 13.6 122 212-333 70-195 (221)
287 PF02284 COX5A: Cytochrome c o 92.7 2.3 4.9E-05 30.3 8.8 60 323-382 28-87 (108)
288 PF10602 RPN7: 26S proteasome 92.7 2.6 5.7E-05 34.2 10.9 61 376-436 38-100 (177)
289 KOG2396 HAT (Half-A-TPR) repea 92.6 9.2 0.0002 36.0 33.8 99 370-471 455-557 (568)
290 PF13929 mRNA_stabil: mRNA sta 92.6 3.9 8.4E-05 35.6 12.1 113 79-191 146-263 (292)
291 PF13176 TPR_7: Tetratricopept 92.5 0.34 7.4E-06 27.1 4.1 30 447-476 2-31 (36)
292 PF10345 Cohesin_load: Cohesin 92.5 13 0.00028 37.4 28.6 88 385-472 372-481 (608)
293 KOG2280 Vacuolar assembly/sort 92.5 12 0.00026 37.1 30.9 304 159-473 425-773 (829)
294 COG3947 Response regulator con 92.3 7 0.00015 34.0 14.3 58 203-261 282-339 (361)
295 PF00637 Clathrin: Region in C 92.0 0.0062 1.4E-07 47.7 -4.9 52 104-155 14-66 (143)
296 PF07035 Mic1: Colon cancer-as 91.8 5.6 0.00012 31.7 15.6 99 291-400 15-115 (167)
297 COG4649 Uncharacterized protei 91.6 5.9 0.00013 31.5 16.0 132 97-229 59-196 (221)
298 PRK15180 Vi polysaccharide bio 91.4 3.4 7.4E-05 38.4 11.0 120 316-438 300-420 (831)
299 PF07719 TPR_2: Tetratricopept 91.4 0.77 1.7E-05 24.9 4.7 26 412-437 4-29 (34)
300 COG4785 NlpI Lipoprotein NlpI, 91.0 8 0.00017 32.1 15.0 65 96-160 98-162 (297)
301 PF00515 TPR_1: Tetratricopept 90.8 0.72 1.6E-05 25.1 4.2 26 412-437 4-29 (34)
302 PF00515 TPR_1: Tetratricopept 90.6 0.95 2.1E-05 24.6 4.6 32 445-476 2-33 (34)
303 PF07035 Mic1: Colon cancer-as 90.5 7.7 0.00017 31.0 14.7 101 152-261 15-115 (167)
304 PF09613 HrpB1_HrpK: Bacterial 90.3 7.6 0.00017 30.6 13.7 53 108-160 21-73 (160)
305 PF04097 Nic96: Nup93/Nic96; 90.3 22 0.00047 35.7 21.5 89 241-334 264-356 (613)
306 KOG4570 Uncharacterized conser 90.0 3 6.5E-05 36.5 8.9 104 229-334 58-164 (418)
307 KOG0890 Protein kinase of the 89.4 46 0.00099 38.3 29.6 62 409-473 1670-1731(2382)
308 COG2909 MalT ATP-dependent tra 89.1 28 0.00062 35.5 33.9 88 246-333 426-525 (894)
309 COG1747 Uncharacterized N-term 89.1 21 0.00046 33.9 25.6 63 234-299 65-127 (711)
310 PF11207 DUF2989: Protein of u 89.0 4.9 0.00011 33.0 9.0 70 323-393 124-197 (203)
311 TIGR02561 HrpB1_HrpK type III 89.0 9.2 0.0002 29.6 13.8 52 109-160 22-73 (153)
312 COG2976 Uncharacterized protei 88.9 11 0.00025 30.7 13.5 90 348-439 97-189 (207)
313 KOG4648 Uncharacterized conser 88.7 2.9 6.2E-05 37.1 7.9 51 350-400 107-157 (536)
314 PF04184 ST7: ST7 protein; In 88.7 22 0.00048 33.7 19.7 60 274-333 263-323 (539)
315 COG4455 ImpE Protein of avirul 88.6 3 6.4E-05 34.5 7.5 57 101-157 5-61 (273)
316 KOG4234 TPR repeat-containing 88.5 8.2 0.00018 31.6 9.7 95 348-445 103-202 (271)
317 PF07719 TPR_2: Tetratricopept 88.2 1.5 3.2E-05 23.7 4.2 29 375-403 2-30 (34)
318 COG5187 RPN7 26S proteasome re 88.2 17 0.00036 31.7 16.3 24 35-58 45-68 (412)
319 PF11207 DUF2989: Protein of u 88.0 8.6 0.00019 31.6 9.8 74 146-220 121-198 (203)
320 PF13929 mRNA_stabil: mRNA sta 87.7 18 0.0004 31.6 15.7 64 370-433 198-262 (292)
321 COG1747 Uncharacterized N-term 87.7 26 0.00056 33.3 22.6 184 195-385 61-250 (711)
322 KOG0276 Vesicle coat complex C 87.6 11 0.00024 36.4 11.5 99 316-434 648-746 (794)
323 COG4785 NlpI Lipoprotein NlpI, 87.6 15 0.00033 30.5 16.6 25 342-366 239-263 (297)
324 PF13374 TPR_10: Tetratricopep 87.3 1.8 3.9E-05 24.7 4.4 27 410-436 3-29 (42)
325 KOG4077 Cytochrome c oxidase, 87.2 3.4 7.3E-05 30.7 6.3 58 150-207 68-125 (149)
326 PF06552 TOM20_plant: Plant sp 87.0 7.9 0.00017 31.1 8.8 63 369-439 64-137 (186)
327 KOG0276 Vesicle coat complex C 86.9 15 0.00032 35.6 11.9 152 108-297 597-748 (794)
328 KOG1586 Protein required for f 86.8 18 0.00039 30.5 18.4 89 354-444 128-228 (288)
329 PF13374 TPR_10: Tetratricopep 86.6 1.9 4.1E-05 24.6 4.3 33 444-476 2-34 (42)
330 KOG4642 Chaperone-dependent E3 86.3 19 0.00042 30.4 11.1 119 315-435 20-143 (284)
331 PF00637 Clathrin: Region in C 85.8 0.38 8.3E-06 37.5 1.2 54 137-190 13-66 (143)
332 COG4455 ImpE Protein of avirul 85.2 8 0.00017 32.1 8.2 74 309-383 5-81 (273)
333 PF13181 TPR_8: Tetratricopept 85.2 2.9 6.3E-05 22.6 4.3 30 446-475 3-32 (34)
334 PF02259 FAT: FAT domain; Int 84.9 31 0.00068 31.6 25.4 65 269-333 145-212 (352)
335 KOG1586 Protein required for f 84.7 23 0.0005 29.9 20.8 59 346-404 160-225 (288)
336 KOG1550 Extracellular protein 84.6 44 0.00096 33.1 24.7 246 182-439 228-505 (552)
337 PF08424 NRDE-2: NRDE-2, neces 84.6 31 0.00067 31.3 17.1 116 359-475 50-185 (321)
338 PF07575 Nucleopor_Nup85: Nup8 84.3 47 0.001 33.1 17.3 31 92-123 144-174 (566)
339 COG2909 MalT ATP-dependent tra 84.3 53 0.0011 33.7 27.8 224 176-399 425-684 (894)
340 KOG4648 Uncharacterized conser 83.9 4.2 9.1E-05 36.1 6.5 93 381-476 104-197 (536)
341 PRK09687 putative lyase; Provi 83.9 30 0.00066 30.6 27.6 218 95-333 35-262 (280)
342 KOG4077 Cytochrome c oxidase, 83.6 8.6 0.00019 28.7 7.0 57 323-379 67-123 (149)
343 COG5159 RPN6 26S proteasome re 83.2 27 0.00058 30.4 10.8 32 239-270 129-164 (421)
344 PF13181 TPR_8: Tetratricopept 82.5 4.5 9.8E-05 21.8 4.4 25 377-401 4-28 (34)
345 TIGR03504 FimV_Cterm FimV C-te 82.2 3.6 7.7E-05 24.3 3.9 22 415-436 5-26 (44)
346 KOG4234 TPR repeat-containing 82.2 27 0.00058 28.8 12.0 92 313-404 103-198 (271)
347 PF08424 NRDE-2: NRDE-2, neces 81.9 40 0.00087 30.6 16.8 81 95-176 17-109 (321)
348 TIGR03504 FimV_Cterm FimV C-te 80.8 4.5 9.8E-05 23.8 4.0 26 379-404 4-29 (44)
349 KOG1550 Extracellular protein 80.4 64 0.0014 32.0 24.6 46 114-159 229-277 (552)
350 COG2976 Uncharacterized protei 79.5 33 0.00072 28.1 14.2 92 379-475 94-190 (207)
351 cd08819 CARD_MDA5_2 Caspase ac 79.4 15 0.00033 25.4 6.6 65 116-185 21-85 (88)
352 KOG4507 Uncharacterized conser 79.3 13 0.00028 35.9 8.3 57 173-229 649-705 (886)
353 PF07163 Pex26: Pex26 protein; 78.8 32 0.00069 30.0 9.8 87 242-328 90-181 (309)
354 PF07721 TPR_4: Tetratricopept 78.5 3 6.4E-05 21.1 2.5 19 136-154 6-24 (26)
355 PF07163 Pex26: Pex26 protein; 78.4 39 0.00084 29.5 10.1 90 204-293 87-181 (309)
356 PHA02875 ankyrin repeat protei 77.8 64 0.0014 30.5 14.7 78 175-259 8-89 (413)
357 PRK09687 putative lyase; Provi 77.7 50 0.0011 29.2 27.9 137 304-455 141-278 (280)
358 PF13174 TPR_6: Tetratricopept 77.6 5.6 0.00012 21.0 3.7 24 136-159 5-28 (33)
359 PF10579 Rapsyn_N: Rapsyn N-te 77.5 9 0.00019 25.9 5.0 19 448-466 47-65 (80)
360 KOG1464 COP9 signalosome, subu 76.6 50 0.0011 28.6 19.1 207 195-401 21-259 (440)
361 KOG2063 Vacuolar assembly/sort 76.3 1E+02 0.0023 32.1 17.4 38 280-317 601-638 (877)
362 KOG0890 Protein kinase of the 76.2 1.6E+02 0.0035 34.3 30.5 150 103-259 1389-1542(2382)
363 KOG1464 COP9 signalosome, subu 76.2 51 0.0011 28.5 18.0 152 145-296 41-217 (440)
364 KOG2471 TPR repeat-containing 76.1 73 0.0016 30.3 13.3 108 278-386 248-381 (696)
365 PF13174 TPR_6: Tetratricopept 76.1 8.1 0.00017 20.4 4.1 23 415-437 6-28 (33)
366 PF11846 DUF3366: Domain of un 75.4 20 0.00044 29.6 8.0 31 407-437 142-172 (193)
367 PF10579 Rapsyn_N: Rapsyn N-te 75.2 21 0.00045 24.2 6.2 53 380-433 13-67 (80)
368 PF06552 TOM20_plant: Plant sp 74.9 43 0.00093 27.1 9.0 61 114-176 52-123 (186)
369 PF04097 Nic96: Nup93/Nic96; 73.6 1.1E+02 0.0023 31.0 17.2 41 172-212 117-157 (613)
370 TIGR02508 type_III_yscG type I 73.0 32 0.00068 24.7 7.8 50 210-265 49-98 (115)
371 PRK14956 DNA polymerase III su 73.0 80 0.0017 30.4 11.9 36 130-165 247-282 (484)
372 PRK15180 Vi polysaccharide bio 72.4 90 0.0019 29.6 27.1 103 353-456 711-825 (831)
373 PF09477 Type_III_YscG: Bacter 71.4 36 0.00079 24.7 9.0 78 77-161 22-99 (116)
374 KOG4642 Chaperone-dependent E3 71.2 65 0.0014 27.5 10.9 119 278-400 18-143 (284)
375 PF11846 DUF3366: Domain of un 70.3 28 0.0006 28.7 7.7 52 352-403 120-173 (193)
376 KOG2066 Vacuolar assembly/sort 70.0 1.3E+02 0.0029 30.6 28.2 102 104-212 363-467 (846)
377 KOG4507 Uncharacterized conser 70.0 40 0.00087 32.7 9.0 87 212-299 619-705 (886)
378 COG5159 RPN6 26S proteasome re 69.6 78 0.0017 27.8 11.1 21 378-398 129-149 (421)
379 PF07575 Nucleopor_Nup85: Nup8 69.5 38 0.00082 33.7 9.6 59 234-294 404-462 (566)
380 PRK10941 hypothetical protein; 68.9 81 0.0018 27.7 10.7 59 345-403 186-244 (269)
381 KOG2471 TPR repeat-containing 68.4 1.1E+02 0.0025 29.2 15.6 40 416-456 342-381 (696)
382 COG3947 Response regulator con 68.3 85 0.0019 27.7 16.0 71 376-447 281-356 (361)
383 smart00028 TPR Tetratricopepti 67.2 11 0.00025 19.0 3.4 25 412-436 4-28 (34)
384 KOG2908 26S proteasome regulat 67.1 98 0.0021 28.0 10.4 56 313-368 83-143 (380)
385 PF11848 DUF3368: Domain of un 67.1 25 0.00054 21.1 5.2 33 420-452 13-45 (48)
386 cd00280 TRFH Telomeric Repeat 66.5 61 0.0013 26.3 8.1 40 380-422 117-156 (200)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 66.4 55 0.0012 24.8 8.6 41 115-155 81-123 (126)
388 cd08819 CARD_MDA5_2 Caspase ac 66.3 41 0.0009 23.4 6.9 66 393-464 21-86 (88)
389 PRK13184 pknD serine/threonine 66.1 1.9E+02 0.0041 30.8 26.2 324 100-436 478-867 (932)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 66.0 53 0.0011 24.9 7.7 61 62-122 64-124 (126)
391 smart00386 HAT HAT (Half-A-TPR 65.9 17 0.00037 18.9 4.2 24 356-379 3-26 (33)
392 KOG0686 COP9 signalosome, subu 65.9 1.2E+02 0.0025 28.3 13.8 93 167-261 151-255 (466)
393 cd00280 TRFH Telomeric Repeat 65.8 60 0.0013 26.4 8.0 23 137-159 117-139 (200)
394 PHA02875 ankyrin repeat protei 65.0 1.3E+02 0.0028 28.5 15.4 181 137-339 38-229 (413)
395 KOG0376 Serine-threonine phosp 64.9 17 0.00038 34.1 5.7 84 316-401 15-99 (476)
396 KOG1308 Hsp70-interacting prot 62.1 13 0.00029 33.2 4.2 87 353-441 127-214 (377)
397 KOG0292 Vesicle coat complex C 61.4 1.1E+02 0.0025 31.5 10.6 129 315-472 653-781 (1202)
398 PF13762 MNE1: Mitochondrial s 60.8 78 0.0017 24.7 10.1 78 170-247 43-127 (145)
399 PRK13342 recombination factor 59.7 1.6E+02 0.0035 27.9 17.2 22 249-270 244-265 (413)
400 PF14853 Fis1_TPR_C: Fis1 C-te 59.5 31 0.00068 21.3 4.4 39 414-454 6-44 (53)
401 PF09477 Type_III_YscG: Bacter 59.5 66 0.0014 23.4 8.7 76 113-194 22-97 (116)
402 PF14853 Fis1_TPR_C: Fis1 C-te 57.9 43 0.00092 20.7 6.0 32 378-411 5-36 (53)
403 PF14689 SPOB_a: Sensor_kinase 57.3 30 0.00065 22.2 4.3 24 413-436 27-50 (62)
404 PF10345 Cohesin_load: Cohesin 56.5 2.3E+02 0.0049 28.7 36.1 182 79-261 39-251 (608)
405 PF12862 Apc5: Anaphase-promot 56.1 69 0.0015 22.6 7.2 21 381-401 48-68 (94)
406 KOG2066 Vacuolar assembly/sort 55.6 2.5E+02 0.0053 28.8 27.3 125 96-227 391-532 (846)
407 PF13762 MNE1: Mitochondrial s 55.5 98 0.0021 24.1 10.7 79 343-421 42-127 (145)
408 KOG4567 GTPase-activating prot 55.3 96 0.0021 27.6 8.0 58 325-386 263-320 (370)
409 PF07064 RIC1: RIC1; InterPro 54.7 1.5E+02 0.0032 26.0 17.1 64 414-477 184-253 (258)
410 PF09454 Vps23_core: Vps23 cor 54.7 36 0.00077 22.2 4.3 50 95-144 6-55 (65)
411 KOG2396 HAT (Half-A-TPR) repea 54.0 2.1E+02 0.0046 27.6 31.9 77 94-171 102-179 (568)
412 PF04190 DUF410: Protein of un 53.8 1.5E+02 0.0033 25.9 17.2 27 372-398 88-114 (260)
413 COG5108 RPO41 Mitochondrial DN 53.2 1.3E+02 0.0027 30.1 9.3 76 310-386 33-115 (1117)
414 PRK11619 lytic murein transgly 52.9 2.7E+02 0.0058 28.4 36.4 181 213-398 254-463 (644)
415 PF09986 DUF2225: Uncharacteri 52.8 1.4E+02 0.0031 25.2 10.3 23 417-439 173-195 (214)
416 PF11848 DUF3368: Domain of un 52.8 49 0.0011 19.9 5.2 31 143-173 14-44 (48)
417 PRK10564 maltose regulon perip 52.4 33 0.00072 30.3 5.0 29 413-441 261-289 (303)
418 COG4259 Uncharacterized protei 52.3 85 0.0018 22.5 6.4 24 172-195 78-101 (121)
419 KOG0991 Replication factor C, 52.0 1.5E+02 0.0033 25.3 11.9 41 151-193 179-219 (333)
420 PRK09857 putative transposase; 51.9 1.5E+02 0.0032 26.6 9.2 64 379-443 211-274 (292)
421 PF04190 DUF410: Protein of un 51.9 1.7E+02 0.0036 25.7 17.4 14 109-122 2-15 (260)
422 PF11663 Toxin_YhaV: Toxin wit 51.8 18 0.00039 27.5 2.9 30 387-418 108-137 (140)
423 KOG2297 Predicted translation 51.5 1.8E+02 0.0039 26.0 17.5 71 316-394 266-341 (412)
424 PF12862 Apc5: Anaphase-promot 51.4 84 0.0018 22.2 7.0 21 138-158 48-68 (94)
425 PF14689 SPOB_a: Sensor_kinase 51.2 42 0.00091 21.5 4.3 46 425-472 6-51 (62)
426 PRK10564 maltose regulon perip 51.0 39 0.00085 29.9 5.3 36 134-169 260-295 (303)
427 PF11663 Toxin_YhaV: Toxin wit 50.8 20 0.00044 27.2 3.1 28 319-348 109-136 (140)
428 KOG0687 26S proteasome regulat 50.3 1.9E+02 0.0042 26.1 14.7 93 342-436 106-208 (393)
429 COG5191 Uncharacterized conser 49.9 30 0.00064 30.6 4.3 80 92-172 102-182 (435)
430 PRK10941 hypothetical protein; 49.8 1.8E+02 0.004 25.6 11.1 79 377-456 184-263 (269)
431 PF00244 14-3-3: 14-3-3 protei 49.0 1.7E+02 0.0038 25.1 11.1 40 206-245 7-46 (236)
432 COG0735 Fur Fe2+/Zn2+ uptake r 49.0 1.2E+02 0.0025 23.7 7.3 61 397-458 9-69 (145)
433 TIGR02508 type_III_yscG type I 48.4 1E+02 0.0022 22.2 8.5 76 79-161 23-98 (115)
434 KOG3364 Membrane protein invol 47.4 1.3E+02 0.0028 23.2 9.5 68 371-438 29-100 (149)
435 KOG4567 GTPase-activating prot 46.6 1.2E+02 0.0026 27.1 7.3 57 290-351 263-319 (370)
436 KOG1839 Uncharacterized protei 46.3 3.2E+02 0.0068 30.0 11.5 153 245-397 942-1122(1236)
437 PF10475 DUF2450: Protein of u 46.1 2.2E+02 0.0048 25.4 10.1 113 276-399 104-222 (291)
438 PF10255 Paf67: RNA polymerase 45.8 1E+02 0.0022 29.0 7.4 99 338-436 70-191 (404)
439 COG0735 Fur Fe2+/Zn2+ uptake r 45.8 1.3E+02 0.0028 23.4 7.1 32 135-166 24-55 (145)
440 KOG0545 Aryl-hydrocarbon recep 45.4 2E+02 0.0044 24.8 10.8 56 348-403 238-293 (329)
441 COG5108 RPO41 Mitochondrial DN 45.4 1.6E+02 0.0034 29.5 8.6 89 345-436 33-130 (1117)
442 KOG2063 Vacuolar assembly/sort 45.3 4E+02 0.0086 28.2 18.5 39 209-247 600-638 (877)
443 PRK09857 putative transposase; 45.1 2.2E+02 0.0049 25.4 9.3 66 343-408 209-274 (292)
444 PRK11639 zinc uptake transcrip 44.9 1.3E+02 0.0028 24.2 7.2 42 104-145 32-74 (169)
445 PF11817 Foie-gras_1: Foie gra 44.8 1.6E+02 0.0035 25.5 8.3 21 276-296 184-204 (247)
446 PF09868 DUF2095: Uncharacteri 44.8 1.1E+02 0.0023 22.6 5.6 37 103-139 67-103 (128)
447 KOG0128 RNA-binding protein SA 44.7 3.8E+02 0.0082 27.8 31.1 98 95-194 111-218 (881)
448 PRK14951 DNA polymerase III su 43.9 3.6E+02 0.0078 27.3 11.4 35 130-165 250-284 (618)
449 KOG4814 Uncharacterized conser 43.8 2.2E+02 0.0047 28.4 9.2 83 352-435 366-454 (872)
450 PF10366 Vps39_1: Vacuolar sor 43.7 1.3E+02 0.0028 22.1 7.1 27 411-437 41-67 (108)
451 PF14561 TPR_20: Tetratricopep 43.6 1.1E+02 0.0025 21.4 7.4 50 96-145 21-72 (90)
452 PF11817 Foie-gras_1: Foie gra 43.0 1.5E+02 0.0032 25.8 7.7 51 346-396 184-240 (247)
453 PRK12798 chemotaxis protein; R 42.9 2.9E+02 0.0064 26.0 20.7 197 248-446 125-332 (421)
454 cd07153 Fur_like Ferric uptake 42.7 77 0.0017 23.4 5.3 42 104-145 7-49 (116)
455 PRK14700 recombination factor 42.6 2.5E+02 0.0054 25.1 11.8 118 181-298 104-229 (300)
456 PF09454 Vps23_core: Vps23 cor 42.5 95 0.0021 20.2 4.8 49 129-178 6-54 (65)
457 KOG1308 Hsp70-interacting prot 42.2 19 0.00042 32.2 2.1 88 179-268 127-215 (377)
458 KOG0991 Replication factor C, 42.0 2.2E+02 0.0049 24.4 15.6 134 276-419 136-282 (333)
459 PRK14962 DNA polymerase III su 41.9 3.4E+02 0.0073 26.4 14.4 48 132-180 245-292 (472)
460 PF15297 CKAP2_C: Cytoskeleton 41.7 2.4E+02 0.0052 25.8 8.7 65 356-420 119-186 (353)
461 KOG2297 Predicted translation 41.4 2.6E+02 0.0057 25.0 17.2 20 271-290 322-341 (412)
462 PF14561 TPR_20: Tetratricopep 41.4 1.2E+02 0.0027 21.2 8.9 35 369-403 17-51 (90)
463 PF11838 ERAP1_C: ERAP1-like C 41.2 2.7E+02 0.0059 25.1 18.1 62 130-194 168-229 (324)
464 PF01475 FUR: Ferric uptake re 40.8 67 0.0014 23.9 4.7 41 104-144 14-55 (120)
465 KOG0292 Vesicle coat complex C 40.7 1.6E+02 0.0035 30.5 8.1 129 176-333 653-781 (1202)
466 PRK08691 DNA polymerase III su 40.7 4.2E+02 0.0092 27.2 11.6 35 130-165 245-279 (709)
467 PF11123 DNA_Packaging_2: DNA 40.7 1E+02 0.0023 20.5 4.7 33 355-387 12-44 (82)
468 COG0790 FOG: TPR repeat, SEL1 40.5 2.6E+02 0.0057 24.7 21.4 84 215-301 128-222 (292)
469 PRK13342 recombination factor 40.4 3.3E+02 0.0071 25.9 19.4 31 388-418 244-274 (413)
470 KOG1839 Uncharacterized protei 39.9 3.5E+02 0.0077 29.6 10.8 26 129-154 971-996 (1236)
471 COG2178 Predicted RNA-binding 39.9 2.2E+02 0.0047 23.6 9.7 107 114-228 20-149 (204)
472 PRK09462 fur ferric uptake reg 39.5 1.8E+02 0.004 22.7 7.4 33 113-145 33-66 (148)
473 PRK14970 DNA polymerase III su 38.8 3.2E+02 0.007 25.3 10.3 38 134-173 238-275 (367)
474 PRK11639 zinc uptake transcrip 38.8 2E+02 0.0043 23.2 7.3 57 369-426 21-77 (169)
475 KOG0686 COP9 signalosome, subu 38.6 3.4E+02 0.0074 25.5 16.9 94 97-192 150-255 (466)
476 COG5187 RPN7 26S proteasome re 38.6 2.8E+02 0.0062 24.6 13.6 65 341-405 116-186 (412)
477 COG0790 FOG: TPR repeat, SEL1 38.5 2.8E+02 0.0061 24.5 22.9 45 358-404 173-221 (292)
478 KOG2659 LisH motif-containing 38.5 2.5E+02 0.0054 23.9 9.8 66 92-157 21-90 (228)
479 PRK12323 DNA polymerase III su 38.1 4.6E+02 0.0099 26.8 12.5 34 54-87 196-229 (700)
480 PF09670 Cas_Cas02710: CRISPR- 38.1 3.4E+02 0.0074 25.4 12.7 55 313-368 139-197 (379)
481 KOG0687 26S proteasome regulat 38.1 3.1E+02 0.0067 24.9 15.4 87 83-171 56-148 (393)
482 TIGR02397 dnaX_nterm DNA polym 37.2 3.3E+02 0.0072 25.0 11.8 40 134-175 247-286 (355)
483 PF10815 ComZ: ComZ; InterPro 36.9 97 0.0021 19.0 3.8 33 50-82 17-49 (56)
484 KOG3364 Membrane protein invol 36.7 2E+02 0.0043 22.2 8.3 66 129-194 30-99 (149)
485 PRK09111 DNA polymerase III su 36.2 4.7E+02 0.01 26.4 14.5 29 136-165 264-292 (598)
486 PRK14961 DNA polymerase III su 36.2 3.6E+02 0.0078 25.1 10.3 36 129-165 244-279 (363)
487 KOG0376 Serine-threonine phosp 35.9 1E+02 0.0023 29.2 5.8 104 276-384 10-115 (476)
488 COG4976 Predicted methyltransf 35.7 83 0.0018 26.7 4.6 54 384-438 5-58 (287)
489 PLN03025 replication factor C 35.5 3.4E+02 0.0074 24.6 14.8 35 130-165 224-258 (319)
490 PF10366 Vps39_1: Vacuolar sor 35.4 1.8E+02 0.0039 21.3 7.4 26 169-194 42-67 (108)
491 PF09986 DUF2225: Uncharacteri 35.3 2.8E+02 0.006 23.5 11.5 24 380-403 171-194 (214)
492 PF02847 MA3: MA3 domain; Int 35.1 1.8E+02 0.0038 21.2 7.9 23 240-262 7-29 (113)
493 cd07153 Fur_like Ferric uptake 35.1 1.2E+02 0.0026 22.3 5.3 47 380-426 6-52 (116)
494 smart00777 Mad3_BUB1_I Mad3/BU 34.9 2E+02 0.0044 21.8 6.4 60 62-121 64-123 (125)
495 PF04910 Tcf25: Transcriptiona 34.8 3.8E+02 0.0082 24.9 18.5 57 242-298 110-167 (360)
496 KOG4279 Serine/threonine prote 33.9 5.5E+02 0.012 26.5 15.2 113 253-368 181-315 (1226)
497 PRK06645 DNA polymerase III su 33.7 4.7E+02 0.01 25.7 11.3 36 129-165 256-291 (507)
498 PF09670 Cas_Cas02710: CRISPR- 33.6 4.1E+02 0.0088 24.9 12.8 57 277-334 138-198 (379)
499 COG4003 Uncharacterized protei 33.4 1.6E+02 0.0034 20.1 5.3 30 104-133 38-67 (98)
500 PF09868 DUF2095: Uncharacteri 32.9 2E+02 0.0044 21.2 5.6 38 136-174 66-103 (128)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.8e-62 Score=484.43 Aligned_cols=415 Identities=17% Similarity=0.289 Sum_probs=362.1
Q ss_pred CCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHH
Q 011643 60 RVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 137 (480)
..+...+..++..+.+.++ .|+++|++|.+..-.+++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 3455677778888877765 78999998877655667888888888888888888889888888865 788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCCh
Q 011643 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ +..||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999998888888989999999999999999999999988887 7788889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHh--CCCCcCHHHHHHHHHHhhccCCHHHHHHHHH
Q 011643 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS--TVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 217 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998888888988999999999999999999999988865 5778888889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCC
Q 011643 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEAD 373 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 373 (480)
+|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ +.+|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99888888888899999999999999999999999998888888888999999999999999999999988888 78888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011643 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88999999999999999999999998888888889999999999999999999999999998888888999999988889
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCC
Q 011643 454 LIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
|.+.|+.++|.+++++|.+.+..|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999998888776654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-61 Score=479.90 Aligned_cols=427 Identities=18% Similarity=0.300 Sum_probs=400.3
Q ss_pred chhHHHHHhhCCCC-CCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011643 47 KVVLDTALDQSGIR-VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 47 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
...+...|...|+. ++.-....++..|...+. .|+.+|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|
T Consensus 389 Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34666778888865 455556667777877665 89999988743 89999999999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChh
Q 011643 124 RTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201 (480)
Q Consensus 124 ~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 201 (480)
.+.|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. +..||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999987 8899999
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHH
Q 011643 202 TYSILLEGWGKDPNLPRAREIFREMVD--TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999986 679999999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHH
Q 011643 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 360 YRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.++|++|.+ +..||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999988 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhccCCCC
Q 011643 439 GIRPSGETFGKLRKLLIK----E-------------------GREDVLKFLQEKMNLLVKEPL 478 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~l~~~~~ 478 (480)
|+.||..+|+.++..|.+ . +..+.|..++++|.+.+..|-
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999876432 1 224679999999998877663
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-57 Score=450.38 Aligned_cols=412 Identities=19% Similarity=0.278 Sum_probs=386.6
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011643 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
..++...+.+.|+.|++.+++.++..+.+.++ .|.++|+.+.. ||..+|+.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35778888899999999999999999998887 89999998842 789999999999999999999999999999
Q ss_pred hCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011643 125 TKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
+.++ |+..+|..++.+|++.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. +|..+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~ 293 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAW 293 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHH
Confidence 9988 999999999999999999999999999999999999999999999999999999999999999974 599999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc
Q 011643 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
|.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 011643 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999974 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 011643 364 RRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 364 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (480)
+.|.+ +..|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+ +.
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~ 524 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MG 524 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CC
Confidence 99986 78999999999999999999999999998876 5679999999999999999999999999999975 44
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 442 P-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
| +..+|..++..|.+.|++++|.+++++|.+.+.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5 467899999999999999999999999987653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-57 Score=458.21 Aligned_cols=407 Identities=16% Similarity=0.240 Sum_probs=359.6
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011643 48 VVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
.+++..+.+.|+.++..+++.++..+++.++ .|.++|+.+.. +|..+||.+|.+|++.|++++|.++|++|..
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566777778888888888888888888887 89999998742 6889999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH
Q 011643 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204 (480)
Q Consensus 126 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 204 (480)
.+. ||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHH
Confidence 998 99999999999999999999999999999999999999999999999999999999999999997 46899999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011643 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.++.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH----------------
Q 011643 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN---------------- 348 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---------------- 348 (480)
++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988865 3666777777777777777777777777764 36666666665554
Q ss_pred -------------------HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011643 349 -------------------GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 349 -------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 409 (480)
+|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 455555555555555554 578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 410 HTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
.||+.++.+|++.|++++|.++|++|. +.|+.|+..+|..++.+|.+.|++++|.+++++|.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999999999999998 67999999999999999999999999999999884
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-56 Score=443.17 Aligned_cols=413 Identities=17% Similarity=0.243 Sum_probs=382.9
Q ss_pred hHHHHHhhC-CCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011643 49 VLDTALDQS-GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 49 ~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
.+...|... ++.|+..++..++..+...+. .|.+++..+.+. |+.||+.+|+.++..|++.|+++.|.++|++|..
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 186 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 344555554 478999999999999987766 789999888554 7889999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHH
Q 011643 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYS 204 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 204 (480)
++..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+ +..||..+|+
T Consensus 187 ---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 187 ---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred ---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 588899999999999999999999999999999999999999999999999999999999998877 8889999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011643 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999963 6899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 011643 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 688999999999999999999999999
Q ss_pred HHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 011643 365 RMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 365 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 442 (480)
+|.+ +..||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 9988 8999999999999999999999999999999986 699999999999999999999999999998876 7899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+..+|.+++.+|...|+++.|.++++++.++++.
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999877664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-56 Score=450.34 Aligned_cols=418 Identities=17% Similarity=0.194 Sum_probs=381.6
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011643 48 VVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
..+...|...|+.|+..++..+++.|...+. .+.+++..+.+ .|+.|++.+|+.+|.+|++.|+++.|.++|++|..
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 3556777788999999999999999987765 78899988865 48899999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHH
Q 011643 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYS 204 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 204 (480)
++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+ +..||..+|+
T Consensus 251 ---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 ---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred ---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011643 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999996 47999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 011643 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 588899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------CCCHHHHHH
Q 011643 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF------------------------------IPSMHTFSV 414 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~p~~~~~~~ 414 (480)
+|..+.+||..+|+.++.+|++.|.++.+.+++..+.+.|+ .||..+|+.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 99988889998887766555554444444444444433332 478899999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hccCCC
Q 011643 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN-LLVKEP 477 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~l~~~~ 477 (480)
++.+|++.|+.++|+++|++|.+.|+.||..||..++.+|.+.|++++|.++++.|. +.+..|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999998 555555
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.9e-27 Score=244.55 Aligned_cols=400 Identities=12% Similarity=0.061 Sum_probs=214.5
Q ss_pred CHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011643 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
++..+..+...+...++ .|.+.|+.+....+ .+...+..+...+...|++++|.+.|+.+....+.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44444444444444443 56666655544322 344555555555555666666666666655555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHH
Q 011643 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
.+.+.|+.++|..+++++.+.+ +.+...+..++..+...|++++|..+++.+....+.+..+|..+..++...|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554443 334444445555555555555555555555544444455555555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC---------------------------------C
Q 011643 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---------------------------------C 266 (480)
Q Consensus 220 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~ 266 (480)
...|+++.+.. +.+...+..+...+...|++++|...++++.+.. .
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555554432 1133344444455555555555555555544432 0
Q ss_pred CcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011643 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
+.+...+..+...+...|++++|...|+.+...+ |+..++..+...+.+.|++++|...++.+.+..+ .+...+..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 2334444444455555555555555555554432 2223444445555555555555555555554422 244455555
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 011643 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
...|...|+.++|...|+++.+..+.++.++..+...+...|+ .+|...++++...... +..++..+...+...|+++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 5555555666666666666555555555555666666666555 5566666655544322 3445555666666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 427 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+++++++.+.. +..++..+..++.+.|+.++|.+++++|.
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777765533 66666677777777777777777777664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.7e-26 Score=239.04 Aligned_cols=397 Identities=14% Similarity=0.105 Sum_probs=292.0
Q ss_pred HHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 011643 69 VLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146 (480)
Q Consensus 69 ~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 146 (480)
+...+...++ .|+++++.+.... +.++.+|..+...+...|++++|.+.|+++....+.+...+..+...+...|+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 3444444444 8999998886643 36888999999999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 011643 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
+++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++....+.+...+..++..+.+.|++++|..+++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998875 6678899999999999999999999999998877778889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH
Q 011643 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (480)
.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+... .+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHH
Confidence 8754 4477889999999999999999999999998764 55677788889999999999999999998876532 2455
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH---------------------------------HHHhC
Q 011643 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN---------------------------------GLIGR 353 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---------------------------------~~~~~ 353 (480)
++..++..+...|++++|..+++.+.+.+. .+...+..+.. ++.+.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC
Confidence 555555666666666666665555554432 13334444444 44444
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
|++++|.+.++.+.+..+.+...+..+...|...|++++|...|+++.+... ++...+..+...+...|+ .+|+..++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 5555555555554444445555555555555555666666666665555432 245555555555555555 55666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++.+.. +.++.++..+...+...|++++|.++++++.+..+
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555432 22344455566666677777777777777766554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.3e-22 Score=187.09 Aligned_cols=301 Identities=16% Similarity=0.140 Sum_probs=167.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 182 (480)
.+...|++++|...|+++...++.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445667777777777777777666666777777777777777777777777765431111 23455666666667777
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH
Q 011643 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~ 258 (480)
++|..+|+++.+..+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...+
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777666544455566666666666666666666666666654322211 12233334444445555555555
Q ss_pred HHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011643 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+++.+.. +. +...+..+...+.+.|++++|...++++.+.+...
T Consensus 204 ~~al~~~-p~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAAD-PQ-----------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHC-cC-----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 4444332 22 23344444455555555555555555554432221
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011643 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|.++++++.+. .|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEY-PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 22344555555555555555555555555432 23334455556666666666666666655544 2555555555554
Q ss_pred HHh---CCChHHHHHHHHHHHHcCCCCCHH
Q 011643 419 LCD---KGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 419 ~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
+.. .|+.++++.++++|.+.++.|++.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 443 335566666666666555444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.5e-22 Score=184.68 Aligned_cols=292 Identities=15% Similarity=0.120 Sum_probs=218.9
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 011643 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD---IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|.++.+..+.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34556666666666666654444555666666666666666666666666665321111 234566677777777777
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHH
Q 011643 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD----VAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777776653 44566777777788888888888888887776543322 224556777888999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011643 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 407 (480)
+++.+.... +...+..+...+.+.|++++|.++++++....+.+ ..++..++.+|...|++++|...++++.+.. |
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 999876422 45677888899999999999999999998743333 4678899999999999999999999998865 6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 011643 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK---EGREDVLKFLQEKMNLL 473 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~l 473 (480)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6677788999999999999999999999875 6889899888877764 56889999999998863
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-20 Score=184.87 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=150.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+.+++.+....+ .++..+..++......|++++|.+.++++....|.+...+..+...+...|++++|+..+++..
T Consensus 60 ~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 60 VGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555544443322 2333444444444445555555555555555555455555555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 238 (480)
+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++...+
T Consensus 138 ~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 138 LAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred HhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHH
Confidence 432 333444455555555555555555555544433233333332222 244455555555555555443222222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011643 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED----AVDTFLEMEKNGILADVAMYNALIGA 314 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~ 314 (480)
..+...+...|++++|...++...... +.+...+..+...+...|++++ |...+++..+... .+...+..+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~ 293 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 333444555555555555555554432 3334444445555555555543 4555555544321 234444555555
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|...++.+....+.+...+..+..++...|+.++|.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555555543221 23334444455555555555555555554433333333333344455555555555
Q ss_pred HHHHHHHhC
Q 011643 395 KVWKYMKLK 403 (480)
Q Consensus 395 ~~~~~~~~~ 403 (480)
..|++..+.
T Consensus 373 ~~l~~al~~ 381 (656)
T PRK15174 373 SVFEHYIQA 381 (656)
T ss_pred HHHHHHHHh
Confidence 555555443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=7.7e-22 Score=176.85 Aligned_cols=371 Identities=16% Similarity=0.107 Sum_probs=317.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll 173 (480)
.-..+|..+.+.+-..|++++|+.+++.+.+..+...+.|..+..++...|+.+.|.+.|....+. .|+... ...+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 356789999999999999999999999999999989999999999999999999999999988875 455443 34455
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHH
Q 011643 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~ 252 (480)
..+...|++++|...+.+..+..+--...|+.|...+-..|++..|++.|++..+. .|+ ...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 56667899999999998888765556788999999999999999999999999875 444 567889999999999999
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011643 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+.+..... +.....+..+...|...|++|-|+..|++..+.... -...|+.|..++-..|++.+|.+.+....
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999887763 455777888888999999999999999999876322 46789999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 011643 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 411 (480)
..... .....+.|...+...|.+++|..+|....+-.+.-....+.|...|-+.|++++|...+++.++- .|+ ...
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda 424 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADA 424 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHH
Confidence 86322 46688889999999999999999999999877777788999999999999999999999999874 465 478
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|+.+...|-..|+.+.|+..+.+++. +.|.. ...+.|...+...|+..+|..-++...++++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 89999999999999999999999986 44554 45778888899999999999999999888764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.7e-19 Score=176.07 Aligned_cols=389 Identities=13% Similarity=0.044 Sum_probs=285.7
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+..|+.+.... |++..|..+..++.+.|++++|++.++.....++.+...|..+..++...|++++|+..|....
T Consensus 145 ~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 145 KAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7999998876543 5778888899999999999999999999998888888899999999999999999998887665
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC----------------------------CCCC-hhhHHHHHHH
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----------------------------FIPD-SKTYSILLEG 209 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------------~~~~-~~~~~~l~~~ 209 (480)
..+...+.. ...++..+........+...++.-... ..+. ...+..+...
T Consensus 222 ~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 222 IIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 443111211 111111111100011111111110000 0000 0011111111
Q ss_pred ---HhcCCChhHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011643 210 ---WGKDPNLPRAREIFREMVDTG-CNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 210 ---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..... +.....|..+..++...|
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCC
Confidence 122467899999999998765 223 45667888888999999999999999998764 344668888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 011643 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|+..++
T Consensus 380 ~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 380 DPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998764 336788888999999999999999999999987433 56677788889999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM------HTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
...+..+.+...++.+...+...|++++|.+.|++........+. ..++.....+...|++++|..++++++..
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999888888999999999999999999999999998876422111 11122222344469999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.. .+...+..+...+.+.|++++|.+++++..++..
T Consensus 538 ~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 538 DP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 42 3445688899999999999999999999887754
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=7e-20 Score=191.82 Aligned_cols=382 Identities=10% Similarity=0.044 Sum_probs=243.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHH------------HHHHHHHHc
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFC------------IIMRKYARV 144 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~------------~li~~~~~~ 144 (480)
.|...|+.+.+..+ .+...+..+...+.+.|++++|+..|++..+..+ +....|. .....+.+.
T Consensus 287 ~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 67777776655433 4667777777777777777777777777766555 1211111 123345567
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHH
Q 011643 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+..+.+...+..+...+. .++.++|..+++
T Consensus 365 g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 77777777777777654 4455666666777777777777777777776654445555544444432 223344444433
Q ss_pred HHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011643 225 EMVDTGCN--------PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 225 ~m~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
.+...... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|...++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32111000 001122233444555666666666666665543 334445555666666666666666666665
Q ss_pred HHCCCCCCHHHHHH--------------------------------------------HHHHHHHcCCHhHHHHHHHHHH
Q 011643 297 EKNGILADVAMYNA--------------------------------------------LIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 297 ~~~~~~~~~~~~~~--------------------------------------------li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.+... .+...+.. +...+...|+.++|..+++.
T Consensus 522 l~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-- 598 (1157)
T PRK11447 522 AQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-- 598 (1157)
T ss_pred HHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--
Confidence 54321 12222222 23344555666666655541
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011643 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 412 (480)
.+.+...+..+...+.+.|+.++|+..++.+.+..|.+...+..++..|...|++++|.+.++.+.+... .+...+
T Consensus 599 ---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~ 674 (1157)
T PRK11447 599 ---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQ 674 (1157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHH
Confidence 1234556777888889999999999999999998888899999999999999999999999998876542 255667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR--P---SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
..+..++...|++++|.+++++++..... | +...+..+...+...|++++|...+++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999999999864322 2 224566677888899999999999988864
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3.7e-20 Score=181.51 Aligned_cols=335 Identities=11% Similarity=0.048 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011643 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
.-...++..+.+.|++++|..+++......+.+...+..++......|++++|+..++++.+.. |.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344566778899999999999999999988778888888888899999999999999999875 667788888999999
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011643 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
..|++++|...+++.....+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999998876778889999999999999999999999988765433 23333333 347889999999999
Q ss_pred HHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHh
Q 011643 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN----VYRVLKDMNS 333 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 333 (480)
++.+......++......+..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433445555666788899999999999999998764 3367788888999999999985 8999999988
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 011643 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTF 412 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 412 (480)
..+. +...+..+...+...|++++|...++++....+.+...+..+..++.+.|++++|...++.+...+ |+. ..+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 6433 567888999999999999999999999998778888899999999999999999999999998765 443 334
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
..+..++...|+.++|...|+++.+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445678899999999999999998754
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.7e-19 Score=179.29 Aligned_cols=408 Identities=10% Similarity=0.032 Sum_probs=314.6
Q ss_pred CCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011643 58 GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
..++++..+...+......++ .|++++..+.... +.+...+..+...+.+.|++++|.++|++.....|.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788888888877766665 8899998876532 357778999999999999999999999999999888888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q 011643 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
.++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+..|.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998874 55666 88888899999999999999999999878788888888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHhHhC-CCCcCHH-HH----HH
Q 011643 216 LPRAREIFREMVDTGCNPDI------VTYGIMVDVLC-----KAGRV---DEALGIVKSMDST-VCRPTSF-IY----SV 275 (480)
Q Consensus 216 ~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 275 (480)
.+.|+..++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998886653 2221 01122222222 12234 7788888888754 1222221 11 11
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 011643 276 LVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---NSRTCNIILNGLI 351 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 351 (480)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 322 22335678999999999999999988753221 1234566667789
Q ss_pred hCCChhHHHHHHHHHHhcCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011643 352 GRGETDEAYRVFRRMIKLCEA------------D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
..|++++|..+++.+....++ + ...+..+...+...|++++|+++++++....+ .+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 999999999999999875432 2 23556778889999999999999999987653 3678889999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 417 NGLCDKGIVSDSCVLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+...|++++|++.++++++.. |+ ...+......+.+.|++++|..+++++.+..++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754 44 556667777888999999999999999887664
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=6e-19 Score=184.89 Aligned_cols=367 Identities=10% Similarity=0.001 Sum_probs=281.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHH------------
Q 011643 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAF------------ 169 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 169 (480)
....+...|++++|+..|++.....+.+..++..+...+.+.|++++|+..|++..+..... ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 35667789999999999999999988889999999999999999999999999998764221 11112
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011643 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
......+.+.|++++|...|+++....+.+...+..+...+...|++++|++.|++..+... .+...+..+...+. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 12244677899999999999999987777888899999999999999999999999997642 24556666777664 56
Q ss_pred CHHHHHHHHHHhHhCCCC--------cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011643 250 RVDEALGIVKSMDSTVCR--------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
+.++|..+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 789999988776432100 01223556777888999999999999999886433 667788888999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH----------------------------------
Q 011643 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI---------------------------------- 367 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------------------- 367 (480)
++|...++++.+.... +...+..+...+...++.++|...++.+.
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999999875322 23333323333344444444444433321
Q ss_pred ------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 011643 368 ------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 368 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (480)
+..+.+...+..+...+.+.|++++|...|+++.+.... +...+..++..+...|++++|++.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 024566677788999999999999999999999987533 78889999999999999999999999887643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+...+..+..++...|++++|.++++++....+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 3455677788888999999999999999887643
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-20 Score=166.62 Aligned_cols=381 Identities=13% Similarity=0.108 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 011643 63 PEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140 (480)
Q Consensus 63 ~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 140 (480)
.+.+..+-+.+...++ .|+.+++.+.+..+ ..+..|..+..++...|+.+.|.+.|.+..+.+|........+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 3455556666666666 79999998877654 5789999999999999999999999999998887555666667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHH
Q 011643 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (480)
+-..|++.+|...|.+.++.. +--..+|..|...+-..|+...|++-|++..+-.+.-...|-.|...|...+.+++|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 788999999999999888753 3335678999999999999999999999998865666788999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011643 221 EIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 221 ~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
..|.+.... .| ..+.+..+.-.|...|.++-|+..+++..+.. +.-...|+.+..++-..|+..+|.+.|.+....
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998865 34 46778888888999999999999999998864 334778999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHH
Q 011643 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
.. .-..+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..+++..+..|.-...|+
T Consensus 350 ~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 32 35678889999999999999999999998875 343 457888999999999999999999999987677788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 011643 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLI 455 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 455 (480)
.+...|-..|+++.|.+.+.+.+..++. -...++.|...|-..|+..+|+.-+++.+. ++||. ..+..++.++.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999999999999999986522 357889999999999999999999999986 45654 34555554443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.8e-17 Score=161.94 Aligned_cols=369 Identities=9% Similarity=-0.076 Sum_probs=272.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+......+.+.|++++|+..|++.....+ +...|..+..+|.+.|++++|++.++...+.+ +.+..++..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 355667788999999999999999887654 67789999999999999999999999999875 5567889999999999
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcC----------------------------
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG---------------------------- 230 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------------------------- 230 (480)
.|++++|..-|.........+......++..+.. ..+........+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999988876644212222111111111111 01111111111100
Q ss_pred ---CCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHhHhCC--CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011643 231 ---CNPD-IVTYGIMVDV---LCKAGRVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 231 ---~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
..+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+..++...|++++|+..+++..+...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 0000 0011111111 122468999999999998764 233456788888899999999999999999987632
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 011643 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 302 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.....|..+...+...|++++|...+++..+.... +...+..+...+...|++++|...|++..+..+.+...+..+.
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 24667888888999999999999999999886433 5678888999999999999999999999998888899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH
Q 011643 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE------TFGKLRKLLI 455 (480)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~ 455 (480)
.++.+.|++++|...+++..+.. +.+...++.+...+...|++++|++.|+++++.....+.. .+......+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998764 2367889999999999999999999999998753221111 1122222334
Q ss_pred hcCCHHHHHHHHHHHHhccCC
Q 011643 456 KEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 456 ~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..|++++|.+++++..++++.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCC
Confidence 469999999999998887654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1e-17 Score=168.06 Aligned_cols=377 Identities=12% Similarity=0.068 Sum_probs=292.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011643 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (480)
.+.++....-.+.+....|+.++|++++.......+.+...+..+...+...|++++|..+|++..+.. |.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 346777777788888999999999999999987666778889999999999999999999999998864 5667778888
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
..++...|++++|...++++....+.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 89999999999999999999987777888 999999999999999999999999986433 4556667788888899999
Q ss_pred HHHHHHHHhHhCCCCcCH------HHHHHHHHHhh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHH
Q 011643 253 EALGIVKSMDSTVCRPTS------FIYSVLVHTYG-----VENRI---EDAVDTFLEMEKN-GILADVA-MYN----ALI 312 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li 312 (480)
+|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999987664 2221 11122222222 22334 7788888888754 1222221 111 113
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhc
Q 011643 313 GAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQG 387 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 387 (480)
..+...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.+....+.+ ......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999987532 332 22335778999999999999999988743322 35567777888999
Q ss_pred CCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011643 388 GELEKAFKVWKYMKLKRF-----------IPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 388 g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
|++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999987531 123 2345667788999999999999999998753 4457778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCC
Q 011643 454 LIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+...|++++|.+.+++..++.+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999887653
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.6e-16 Score=153.32 Aligned_cols=403 Identities=11% Similarity=0.020 Sum_probs=283.8
Q ss_pred HHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 011643 68 DVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145 (480)
Q Consensus 68 ~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 145 (480)
.++..+...+. +|+..++.... +-+.+......+...+...|++++|+++|+++.+..|.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 45444444443 78888877752 222344455555667778888888888888888888877777777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHH
Q 011643 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
+.++|++.++++... .|+...+..++..+...++..+|++.++++.+..|.+...+..+...+.+.|-...|.++..+
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 888888888888765 345555555555554556666688888888887677788888888888888888888876665
Q ss_pred HHHcCCCCChhhH------HHHHHHH---H--hcCC---HHHHHHHHHHhHhC-CCCcCH-H----HHHHHHHHhhccCC
Q 011643 226 MVDTGCNPDIVTY------GIMVDVL---C--KAGR---VDEALGIVKSMDST-VCRPTS-F----IYSVLVHTYGVENR 285 (480)
Q Consensus 226 m~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~ 285 (480)
-... +.+....+ ...++.- . ...+ .+.|+.-++.+... +..|.. . ...-.+.++...|+
T Consensus 229 ~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 229 NPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred Cccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 3321 11111101 0111100 0 1112 23455555555442 112322 1 22344667788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhCCChhHHH
Q 011643 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV-----APNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
+.++++.|+.+...+.+....+-.++.++|...++.++|..++..+..... .++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888766677888999999999999999999999876431 223333577888999999999999
Q ss_pred HHHHHHHhcCC------------CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 011643 361 RVFRRMIKLCE------------ADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 361 ~~~~~~~~~~~------------~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
.+++.+.+..| ||+ ..+..++..+...|+..+|++.++++....+ -|......+...+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCH
Confidence 99999987322 221 2345567888899999999999999987653 3888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 011643 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 426 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
.+|...++.+.... +-+..+......++...|++++|.++.+++.+..++.
T Consensus 467 ~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 467 RKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99999997776542 2345566677888889999999999998887776653
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=8.5e-16 Score=151.44 Aligned_cols=392 Identities=12% Similarity=0.083 Sum_probs=290.6
Q ss_pred hHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011643 78 TLAFCFFKWAEKQQNYEHSV-RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 78 ~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
..|+..|+.+.+..+ .++ .++ .++..+...|+.++|+..+++.....+........+...+...|++++|+++|++
T Consensus 51 ~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 51 APVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred HHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 389999998876654 232 233 8888889999999999999999844445566666667899999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChh
Q 011643 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 236 (480)
+.+.. |.++..+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++++.+.. +-+..
T Consensus 128 aL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e 204 (822)
T PRK14574 128 SLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEE 204 (822)
T ss_pred HHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHH
Confidence 99876 55677888888899999999999999999987533 44445555555555667767999999999874 22567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHH------HHHHHHh---h--ccCC---HHHHHHHHHHHHHC-CC
Q 011643 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY------SVLVHTY---G--VENR---IEDAVDTFLEMEKN-GI 301 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~ 301 (480)
.+..++.++.+.|-...|.++..+-...- .+....+ ...++.- . ...+ .+.|+.-++.+... +.
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 77888899999999999988877644221 1111111 1111110 0 1122 34556666665542 11
Q ss_pred CCC-HHHH-H---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcC------
Q 011643 302 LAD-VAMY-N---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------ 370 (480)
Q Consensus 302 ~~~-~~~~-~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 370 (480)
.|. ...| . -.+-++...|++.++.+.++.+...+......+-..+..+|...+++++|+.+++.+....
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~ 363 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN 363 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC
Confidence 132 2222 2 2344678899999999999999988866556688899999999999999999999997622
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF-----------IPS--M-HTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+++......|..+|...+++++|..+++.+.+..+ .|| - ..+..++..+...|+..+|++.++++.
T Consensus 364 ~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 364 SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444467899999999999999999999987321 122 2 334556777889999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 011643 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 437 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
... +-|......+...+...|++.+|++.++....+.+.+
T Consensus 444 ~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 444 STA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 764 4588888899999999999999999999888887654
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=2.7e-15 Score=129.53 Aligned_cols=398 Identities=15% Similarity=0.173 Sum_probs=255.3
Q ss_pred HHHHHhCC---CchhHHHHHhhCCCCCCHHHHHHHHHHHhhCch-----HHHHHHHHHhhc------------------C
Q 011643 38 ISKIMLSS---PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT-----LAFCFFKWAEKQ------------------Q 91 (480)
Q Consensus 38 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~A~~~f~~~~~~------------------~ 91 (480)
+.+.+.+. ....+...|++.|++.++..-..+++..+-... .-.+-|-.+... .
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 44555544 355788999999999999998888775442221 111222111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011643 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
-.+.+..+|..+|.++++--..+.|.+++++...... .+..+|+.+|.+-.-... .++..+|....+.||..|+|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 1234667788888888888888888888888776665 788888888776543332 66777788777888888888
Q ss_pred HHHHHHHccCChhh----HHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhH-HHHHHHHHHH----cCCCC----Chh
Q 011643 171 GLLSALCKSKNVRK----AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR-AREIFREMVD----TGCNP----DIV 236 (480)
Q Consensus 171 ~ll~~~~~~g~~~~----a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~~~ 236 (480)
+++.+.++.|+++. |.+++.+|++ ++.|...+|..+|..+++.++..+ +..++.+... +.++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 88888888887654 4556666777 788888888888888888777644 3344444332 22222 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCC----CCcC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011643 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV----CRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
.|...+..|.+..+.+-|.++...+.... +.|+ ...|..+....|.....+.....|+.|.-+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 55666777777777777777766654321 1222 3345666777777778888888888887776777777778
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-Ch--------h-----HHHHHHHHHHh------c
Q 011643 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ET--------D-----EAYRVFRRMIK------L 369 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~~~~~------~ 369 (480)
.++++..-.|.++-.-+++.+++..|.......-.-++..+++.. .. . -|..+++.... .
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 888888888888888888888877765544444444444444332 11 0 01111111111 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011643 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR----FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
........+.++-.+.+.|+.++|.+++..+.+.+ ..|.......++..-...+....|..+++-|...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33455566777777788888888888888775442 12333344455666667777888888888876654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.5e-16 Score=145.18 Aligned_cols=394 Identities=14% Similarity=0.138 Sum_probs=269.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.+++.+..+...++ .++.+.+.+.+.+.-.|++..++.+...+..... .-.+.|..+.++|-..|++++|...|.
T Consensus 254 ~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 68888887766655 6888889999999999999999999998876653 445668899999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCC----ChhHHHHHHHHHHHcCC
Q 011643 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP----NLPRAREIFREMVDTGC 231 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~ 231 (480)
+.....-...+..+..+...+.+.|+++.+...|+.+....+.+..+..+|...|...+ ..+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 87765422224455667888999999999999999998877778888888888887765 3455555555555432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh----HhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC---CCCCC
Q 011643 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN---GILAD 304 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 304 (480)
+.|...|..+...+... +...++..+... ...+..+.....|.+...+...|+++.|...|...... ...++
T Consensus 411 ~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 22455555555544433 333334444433 23333455556666666666666666666666655432 01111
Q ss_pred HH-------HHHH--------------------------HHHHHHH-------cCCHhHHHHHHHHHHhCC---------
Q 011643 305 VA-------MYNA--------------------------LIGAFCK-------ANKFKNVYRVLKDMNSKG--------- 335 (480)
Q Consensus 305 ~~-------~~~~--------------------------li~~~~~-------~~~~~~a~~~~~~~~~~~--------- 335 (480)
.. -||. .|.+|.+ .+...+|...++.....+
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 10 1110 1111222 233444444444433311
Q ss_pred --------------------------CCCChhhHHHHHHHHH------------hCCChhHHHHHHHHHHhcCCCCHHHH
Q 011643 336 --------------------------VAPNSRTCNIILNGLI------------GRGETDEAYRVFRRMIKLCEADADTY 377 (480)
Q Consensus 336 --------------------------~~p~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (480)
..+|..+.-.|.+.|. ..+..++|+++|.++++..|.|...-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 1123333333334332 22446788888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Q 011643 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 456 (480)
+.+.-.++..|++.+|..+|.++.+.... ...+|..+..+|...|++..|+++|+..... ....+..+...|.+++.+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999886532 5568999999999999999999999998854 445677888999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCC
Q 011643 457 EGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 457 ~g~~~~a~~~~~~~~~l~~~~ 477 (480)
.|++.+|.+.+.....+.+..
T Consensus 729 ~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCcc
Confidence 999999999988887766543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=4e-14 Score=142.72 Aligned_cols=189 Identities=11% Similarity=0.024 Sum_probs=113.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 011643 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
..|++++|...|+++... +|+...+..+...+.+.|+.++|...++...+.+.. ....+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHH
Confidence 444455555555444332 222223333444445555555555555555543211 11122222223334467777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 011643 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (480)
.+++..+..| +...|..+..++.+.|++++|...+++.....+. +...+..+..++...|+.++|+..++++++.. +
T Consensus 598 ~~~~AL~l~P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P 674 (987)
T PRK09782 598 DLTRSLNIAP-SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-P 674 (987)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 7776665433 4667777777777777777777777777776532 55666777777777778888888777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
-+...+..+..++...|++++|...+++..++++.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34566677777777788888888888877776654
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=2.9e-14 Score=143.64 Aligned_cols=356 Identities=10% Similarity=-0.023 Sum_probs=272.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHccCC---hh
Q 011643 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G-VTQNLAAFNGLLSALCKSKN---VR 183 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~ 183 (480)
..+...++...++.|-...+-+......+.-...+.|+.++|.++|+..... + ...+....+-++..|.+.+. ..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4467777777777777776777777888888888999999999999888662 1 23345556678888877766 33
Q ss_pred hHHHH----------------------HHHhhc---CCCC--ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChh
Q 011643 184 KAQEI----------------------FDCMKD---RFIP--DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 184 ~a~~~----------------------~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 236 (480)
++..+ .+.... ..++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 222222 2345 67788888888887 8999999988888765 35654
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011643 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 316 (480)
....+...+...|++++|...++++... +|+...+..+..++...|++++|...+++..+.. +.....+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444555667899999999999998665 4455556677888899999999999999998864 223333334444455
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011643 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (480)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++.....|.+...+..+..++...|++++|...
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 669999999999999986 456788999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+++..+..+. +...+..+..++...|++++|+..+++..+.. |+. .+.........+..+++.+.+-+++...+.+
T Consensus 666 l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999987643 67889999999999999999999999999753 444 4444555666666777777776666555443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.9e-16 Score=134.62 Aligned_cols=403 Identities=13% Similarity=0.128 Sum_probs=220.4
Q ss_pred CHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCH----HHH
Q 011643 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNV----ETF 134 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~ 134 (480)
+-.++..+.+.+..... +|+..|+.+.+..-|+.....--.+.+.+.+.+.+.+|++.|+-....-| .+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33333334444433333 78899998887776655555555677788899999999999987766544 333 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc--C-----------CCCChh
Q 011643 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--R-----------FIPDSK 201 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-----------~~~~~~ 201 (480)
+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..|.. + ..|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55666788999999999999988875 57777665666677888999999999998864 1 122332
Q ss_pred hHHHHH-----HHHhcCCC--hhHHHHHHHHHHHcCCCCChhh---H------------------HHHHHHHHhcCCHHH
Q 011643 202 TYSILL-----EGWGKDPN--LPRAREIFREMVDTGCNPDIVT---Y------------------GIMVDVLCKAGRVDE 253 (480)
Q Consensus 202 ~~~~l~-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~~ 253 (480)
..+..+ .-+-+.+. .++++-.--+++.--+.|+-.. | ..-..-+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222222 11111111 1111111111111112222100 0 001223567788888
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHH------------------------------------HHHhhccCCHHHHHHHHHHHH
Q 011643 254 ALGIVKSMDSTVCRPTSFIYSVL------------------------------------VHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~g~~~~a~~~~~~~~ 297 (480)
|.+++.-+.+.+.+.-+..-+.| .......|++++|.+.|++..
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 87777766554322111111111 011124567888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHH
Q 011643 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377 (480)
Q Consensus 298 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (480)
.....-....|| +.-.+-..|+.++|++.|-++... +..+......+...|....+...|++++.+....+|.|+.+.
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH
Confidence 653221222222 223456677777777777665442 112444555555666666666666666666655556666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h
Q 011643 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI-K 456 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~ 456 (480)
..|...|-+.|+-..|.+.+-.--+. ++-|..+...|..-|....-+++++.+|+++.- +.|+..-|..++..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 66666666665555555544332221 233444444444444444445555555554432 3455555544433322 3
Q ss_pred cCCHHHHHHHHHHHH
Q 011643 457 EGREDVLKFLQEKMN 471 (480)
Q Consensus 457 ~g~~~~a~~~~~~~~ 471 (480)
.|+++.|.++++...
T Consensus 673 sgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIH 687 (840)
T ss_pred cccHHHHHHHHHHHH
Confidence 455555555555443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.5e-13 Score=117.59 Aligned_cols=400 Identities=14% Similarity=0.150 Sum_probs=278.1
Q ss_pred HHHHHHHHhhCch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhC---------------
Q 011643 66 VEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK---IRQYQIMWDLVNAMRTK--------------- 126 (480)
Q Consensus 66 ~~~~l~~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~--------------- 126 (480)
-+.+++-...... .+.-+|+.+.+. +.+-+..+-..+++.-+- .+-+-.-++.|-.|...
T Consensus 119 E~nL~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 3344444433322 677777777443 555566655555443221 11111122333333222
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCCh
Q 011643 127 -----RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDS 200 (480)
Q Consensus 127 -----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~ 200 (480)
-|.+.+++..+|.++++--..+.|.+++++..+...+.+..+||.+|.+-+-..+ .+++.+|.. +..||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 2357889999999999999999999999999887779999999999987654333 788888887 889999
Q ss_pred hhHHHHHHHHhcCCChhH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHhHh----CCC----C
Q 011643 201 KTYSILLEGWGKDPNLPR----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE-ALGIVKSMDS----TVC----R 267 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~----~ 267 (480)
.|+|+++++..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ +..++..+.. ..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998875 56788899999999999999999999999888754 4444444432 222 2
Q ss_pred cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh
Q 011643 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG----ILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 340 (480)
.+...|...+..|....+.+-|.++..-+.... +.|+ ...|..+....|+....+.....|+.|+-.-..|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 345567778888889999998888776665321 2222 334666777888889999999999999988888999
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-CH--------H----H-HHHH-------HH
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG-EL--------E----K-AFKV-------WK 398 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~--------~----~-A~~~-------~~ 398 (480)
.+...++++..-.|.++-.-++|..+.. +...+......++..+++.. +. . + |..+ -.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999988888888876 43444444444444444433 11 0 0 1111 12
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG----IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
++.... ......+.++-.+.+.|+.++|.++|....+.+ ..|.......+++.-.......+|...++-+..
T Consensus 514 R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 514 RQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233333 344567777778899999999999999986543 234444455667777778888888888877743
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=5.4e-13 Score=121.48 Aligned_cols=410 Identities=11% Similarity=0.069 Sum_probs=325.3
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhhCch--HHHHHH----HHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011643 52 TALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFF----KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~f----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
..|+..|+.++.+....=...|...+. .+..+. .+..... .--.+|+.-.+.|.+.+.++-|..+|....+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee---d~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE---DRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc---hhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 445567777777666555555555554 222222 2222211 2345788888889999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHH
Q 011643 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (480)
-.+.....|...+..--..|..+....+|++.... ++-....|......+...|++..|..++.+.-+..+.+...|..
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 88778888888888888889999999999999886 35556667777778888899999999999988877778899999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCC
Q 011643 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
.+.....+.+++.|..+|.+.... .|+...|..-++.---.++.++|.+++++..+. ++.-...|-.+...+.+.++
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHH
Confidence 999999999999999999998864 567777777777777789999999999988876 23345667788888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 011643 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365 (480)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 365 (480)
.+.|.+.|..-.+. ++-....|-.+...=-+.|..-.|..++++..-+++. +...|...|+.-.+.|..+.|..+..+
T Consensus 701 ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988876654 4446677777777778888999999999998887655 778899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011643 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
+.+.++.+...|..-|....+.++-.+....+++- .-|......+...|-...+++.|.+.|.+....+ ..+..
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 99999999999998888888877765555554432 2477788888888888999999999999999765 34577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|..+.+.+.+.|.-++-.+++.+....+++
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 8999999999999988888898888776554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.2e-13 Score=130.28 Aligned_cols=317 Identities=15% Similarity=0.122 Sum_probs=163.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|.+++..+.++.+ .+...|..+...|-..|+.+++...+-.....++.|...|..+.....+.|++++|.-+|.+.+
T Consensus 157 eA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 56666666555543 4666666666666666666666666666666666555666666666666666666666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-----hhHHHHHHHHhcCCChhHHHHHHHHHHHc-CCC
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-----KTYSILLEGWGKDPNLPRAREIFREMVDT-GCN 232 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~ 232 (480)
+.. |++....---...|-+.|+...|..-|.++....+|.. ..-..+++.+...++-+.|.+.++..... +-.
T Consensus 235 ~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 654 44444444445566666666666666666655333221 11223344455555556666666655542 122
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC---------------------------HHHHHHHHHHhhccCC
Q 011643 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT---------------------------SFIYSVLVHTYGVENR 285 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------------------~~~~~~l~~~~~~~g~ 285 (480)
.+...++.++..+.+...++.+......+......+| ..+ .-++-++...+.
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~ 392 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKE 392 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccc
Confidence 3445556666666666666666666555544111111 111 011112222222
Q ss_pred HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 011643 286 IEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 286 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
.+....+...+.+.. +..+...|.-+..+|.+.|++.+|..+|..+......-+...|-.+..+|...|..++|.+.+
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 222222333333322 222334445555555555555555555555554433333445555555555555555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
..+....|.+...-..|...+.+.|+.++|.+.+..
T Consensus 473 ~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 473 EKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 555554444444445555555555555555555554
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5e-14 Score=130.62 Aligned_cols=281 Identities=10% Similarity=0.085 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH--HHHHHHhcCCChhHHH
Q 011643 144 VQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS--ILLEGWGKDPNLPRAR 220 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 220 (480)
.|++++|.+.+....+.+ +++.. +.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555443321 11122 222222334555555555555555442 22221111 2244455555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHH-------HHHHHHHHhhccCCHHHHHHHH
Q 011643 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-------IYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 221 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
..++++.+.+.. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555544321 34444455555555555555555555555443221110 1111222222222233333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 011643 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+.+.+. .+.++.....+...+...|+.++|..++.+..+. .|+.. ..++.+....++.+++.+..+...+..|.|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 333221 1223444444444444444444444444444432 11221 111122222344444444444444444444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
+..+..+.+.+.+.+++++|.+.|+.+.+.. |+...+..+...+.+.|+.++|.+++++.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444444444444444332 44444444444444444444444444443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=4.5e-13 Score=126.51 Aligned_cols=366 Identities=11% Similarity=0.090 Sum_probs=282.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011643 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (480)
..+.+...|++++|.+++.++.+..+.+...|.+|...|-..|+.+++...+-..-..+ +.|...|..+.......|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 34444555999999999999999999999999999999999999999988876665544 66778899999888999999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcCCHHHHHHHH
Q 011643 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY----GIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~ 258 (480)
++|.-.|.+..+..+++...+---+..|-+.|+...|..-|.++.....+.|..-+ ..++..+...++-+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999877888877777888899999999999999999876543333322 34566677788889999988
Q ss_pred HHhHhC-CCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH---------------------------CCCCCCHHHHHH
Q 011643 259 KSMDST-VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK---------------------------NGILADVAMYNA 310 (480)
Q Consensus 259 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------------~~~~~~~~~~~~ 310 (480)
+..... +-..+...++.++..+.+...++.+......+.. .+..++..++..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887662 2244556678888889999999998887777654 123345544332
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 011643 311 LIGAFCKANKFKNVYRVLKDMNSKGV--APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 387 (480)
+ -++......+....+.....+... .-+...|.-+..++...|++.+|+.+|..+.. ..-.+...|-.+.++|...
T Consensus 384 ~-icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 M-ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred h-hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2 344555556666666666666653 33566788899999999999999999999988 3334577899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH--------HHcCCCCCHHHHHHHHHHHHhcCC
Q 011643 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM--------IEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
|.++.|.+.++.+....+. +...-..|...+-+.|+.++|.+.++.+ ...+..|+..........+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999886522 5566677778888999999999999984 334678888888888888999999
Q ss_pred HHHHHHHHHHHH
Q 011643 460 EDVLKFLQEKMN 471 (480)
Q Consensus 460 ~~~a~~~~~~~~ 471 (480)
.++-......|.
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877666555543
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=5.3e-14 Score=131.20 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=58.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHHHHHhcCCChhHHH
Q 011643 143 RVQKVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 220 (480)
..|+++.|.+.+....+.. |+ ...+-....++...|+.+.|.+.+.+..+..+.+. ..-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3456666666665554432 22 22223334445555666666666655543221111 12222355555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 011643 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 221 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
..++.+.+.++. +...+..+...+...|++++|.+.+..+.+.+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 555555554321 33445555555555555555555555555544
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.8e-13 Score=126.96 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=213.0
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG--IMVDVLCKAGRVDEALG 256 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~ 256 (480)
.|+++.|++.+....+..+.....|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 689999998887765532212333434455557889999999999998864 34443322 34677888999999999
Q ss_pred HHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHhHHHHHHH
Q 011643 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV-------AMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
.++.+.+.. +-+......+...|...|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 556778888899999999999999999999887654322 233444544445556667777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011643 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 409 (480)
.+.+. .+.++.....+...+...|+.++|.+++++..+ .+++.... ++.+....++.+++.+..+...+.... |.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CH
Confidence 66443 234677888888899999999999999988887 45565332 233444568899999999988876533 66
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011643 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
..+..+...|.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+++++-..+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7788888999999999999999999987 46888888889999999999999999999886654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.4e-13 Score=128.48 Aligned_cols=290 Identities=12% Similarity=0.005 Sum_probs=123.3
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (480)
.|+++.|.+.+.+..+..+.....+-.........|+.+.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555444332221222233334444455555555555555443321111112222344445555555555555
Q ss_pred HHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHhHHHHHHHHHHhCC
Q 011643 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF---CKANKFKNVYRVLKDMNSKG 335 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~ 335 (480)
+.+.+.. +-+......+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+++...+..+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 5555443 3334444455555555555555555555555544321111111111111 11122222222333332221
Q ss_pred C---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCH-
Q 011643 336 V---APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF--CQGGELEKAFKVWKYMKLKRFIPSM- 409 (480)
Q Consensus 336 ~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~- 409 (480)
. +.+...+..+...+...|+.++|.+.+++..+..+.+......++..+ ...++.+.+.+.++...+.... |.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~ 334 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPK 334 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-Chh
Confidence 1 013444444555555555555555555555543333322110111111 2234445555555554443211 22
Q ss_pred -HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 410 -HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 410 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
.....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555555555555555555553332233455555555555555555555555555554
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.8e-16 Score=140.47 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHHccCChhhHHHHHHHhhcCC--CCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 250 (480)
...+...|++++|.++++...... +.+...|..+.......++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 334444444444444443322211 222333333333333444444444444444433221 22233333333 34444
Q ss_pred HHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011643 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
+++|.++++...+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444433322 1233333444444444444444444444443221 12334444444444455555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011643 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 409 (480)
+..+..+. +......++..+...|+.+++.++++...+..+.|+..+..+..+|...|+.++|...+++...... .|+
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~ 248 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDP 248 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-H
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-ccc
Confidence 55443211 2334444444455555555544444444443344444444555555555555555555555444321 144
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 410 HTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
.....+..++...|+.++|.++.+++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444555555555555555544443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2e-16 Score=140.29 Aligned_cols=262 Identities=14% Similarity=0.145 Sum_probs=116.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc
Q 011643 205 ILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56888889999999999997665443 23345556666677788999999999999998875 3356677777777 789
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChhHHHHH
Q 011643 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 466778888899999999999999999987643 345677888899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 011643 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 442 (480)
++++.+..|.|......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..... +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999999888899999999999999999999999988887653 3456678899999999999999999999998754 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
|+.+...+..++...|+.++|.++.++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788889999999999999999999988754
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.5e-12 Score=110.39 Aligned_cols=388 Identities=12% Similarity=0.044 Sum_probs=289.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|..+|+.+..... .+...|...+..-.+++.++.|..+++.....-|--...|...+..--..|++..|.++|++..
T Consensus 91 RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 69999999987654 7888999999999999999999999999988777556677777777788999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc-CC-CCChh
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GC-NPDIV 236 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~ 236 (480)
+. .|+...|++.+..=.+-+.++.|..++++..-- .|++.+|--....=.+.|+...|..+|+...+. |- ..+..
T Consensus 169 ~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 75 799999999999999999999999999998763 489999999999989999999999999887643 10 01122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhC-------------------------------------------CCCcCHHHH
Q 011643 237 TYGIMVDVLCKAGRVDEALGIVKSMDST-------------------------------------------VCRPTSFIY 273 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~ 273 (480)
.+.+....-.+...++.|.-+|.-.... ..+-|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 2333333223333444443333322211 113455566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HHH---HHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011643 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADV--AMYNALI-----GAF---CKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li-----~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
-..+..-...|+.+...++|++.+.+ ++|-. ..|..-| -++ ....+.+.+.++++..++. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 66777777788999999999988865 34321 1122222 122 2367888889999888873 33344565
Q ss_pred HHHHHHH----HhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011643 344 NIILNGL----IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 344 ~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+--.| .++.++..|.+++..++. .-|-..++...|..-.+.++++.+.+++++.++-++. |-.+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 5554443 567888999999888774 4567778888888889999999999999999988744 778888888877
Q ss_pred HhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 420 CDKGIVSDSCVLLEDMIEKGI-RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
...|+.+.|..+|+-+++... ......|.+.|+.-...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 888999999999999986542 22344577888888889999999999999887543
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=7.6e-12 Score=114.20 Aligned_cols=389 Identities=11% Similarity=0.055 Sum_probs=242.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 153 (480)
.|.++++.+.+. .+.+...|..-...--.+|+.+....++++- ...|. .+...|-.=...|-..|..--+..+
T Consensus 424 nAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 424 NAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 477888888654 4478888888888888889998888887754 34555 7777776666677777777666666
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC
Q 011643 154 FNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 231 (480)
....+..|+... ..+|+.-...|.+.+.++-|..+|....+-++.+...|...+..--..|..++...+|++.... +
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~ 580 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-C 580 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-C
Confidence 666666554332 3456666666666677777777776666666666666666666655666666666666666654 2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011643 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (480)
+-....|.....-+-..|+...|..++.+..+.. +.+...|...+.......+++.|..+|.+.... .|+...|.--
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 2244445555555555666666666666665553 335555666666666666666666666665543 3344444444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011643 312 IGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
+..---.++.++|.+++++.++. .|+ ...|..+.+.+-+.++.+.|.+.|..-.+.+|..+..|-.|.+.--+.|++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 43333455666666666665554 222 234555555555556666666555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-----------------------------CCC
Q 011643 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-----------------------------GIR 441 (480)
Q Consensus 391 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~ 441 (480)
-+|..++++..-+++. +...|...|+.-.+.|+.+.|..++.++++. ...
T Consensus 736 ~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 736 VRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 6666666555554433 4555555555555555555555554444321 124
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.|+.++..+...+....+++.|.++|++..+.++.
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 56777778888888889999999999998887765
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=9.5e-12 Score=118.63 Aligned_cols=317 Identities=11% Similarity=0.041 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.|.+.|..+.++.+ +|+-.+---.......|++..|+.+|......++ .-+.....+...+.+.|+.+.|+..|.+.
T Consensus 148 ~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 34444444444332 3333333333333344555555555555444333 22222222233344555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCC---hhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCC--
Q 011643 158 QKYGVTQNLAAFNGLLSALCKSKN---VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-- 232 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-- 232 (480)
.+.+ |.++.++..|...-....+ +..+...+...-...+.++.+.+.|...|.-.|+++.++.+...+......
T Consensus 226 lqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 226 LQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 5433 1222222222221111111 333444444433333445555555555555555555555555555433210
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011643 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.-...|-.+.++|-..|++++|..+|.+..+.........+.-+...+...|+++.+...|+.+.+.. +.+..+...+.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 01223444555555555555555555554443211112223344455555555555555555554431 22333444444
Q ss_pred HHHHHcC----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 011643 313 GAFCKAN----KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~ 383 (480)
..|...+ ..+.|..++.+..+.- ..|...|-.+...+... +...++..+..+.. +.++.+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 4443332 2334444444444332 11333444444433332 22222444444332 223444455555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011643 384 FCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~ 401 (480)
+...|++++|...|....
T Consensus 462 hf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHHHHHHHHHh
Confidence 555555555555555444
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2e-12 Score=111.45 Aligned_cols=290 Identities=11% Similarity=0.074 Sum_probs=203.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhHHHHH
Q 011643 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREI 222 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (480)
.|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-..+.+..+ ...++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666665555 22333444455556666777777777766665 2344555566666666677777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCH-------HHHHHHHHHhhccCCHHHHHHHHHH
Q 011643 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-------FIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 223 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++++.+.+.. .........++|.+.|++.....++..+.+.+.-.++ .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7776665433 4455666667777777777777777777666644332 3456666666666666665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHH
Q 011643 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (480)
.... .+.++..-.+++.-+.++|+.++|.++..+..+++..|+ . ...-.+.+.++...-++..+.-.+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 334566677778888999999999999999988877665 2 2223456778888888888887777778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 442 (480)
.+.+|.+.|.+.+.+.+|...|+...+.+ |+..+|+.+..++.+.|+..+|.++.++.+..-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999877754 899999999999999999999999998887443333
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.4e-12 Score=109.75 Aligned_cols=358 Identities=11% Similarity=0.050 Sum_probs=241.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH--HHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF--NGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 172 (480)
.|+..+-...-.+.+.|....|+..|......-|.....|..|...... ++....... |.+.+.... -.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHHH
Confidence 3444444455556677888888888888877766666666555544322 112222221 222222211 123
Q ss_pred HHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcC
Q 011643 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN--PDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g 249 (480)
..++....+.+++.+-.+.... +++-+...-+....+.-...++++|+.+|+++.+..+- -|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3455555677777777777666 55555655566666667788899999999999876411 156677766533 322
Q ss_pred CHHHHHHHHH-HhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 011643 250 RVDEALGIVK-SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 250 ~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+-. +.++. .....+ +--+.|+..+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|..-+
T Consensus 312 ~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 211 11111 111111 334556777888888889999999999998886533 5667888888899999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011643 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 408 (480)
+..++-++. |-..|-.|.++|.-.+.+.-|+-.|+++..--|.|...|.+|.++|.+.++.++|++.|......|-. +
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 998886444 77888899999999999999999999988877888999999999999999999999999998877633 5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIE----KGIRPS--GETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
...+..+...|-+.++..+|...|++.++ .|...+ ......|..-+.+.+++++|..+..
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 67888889999999999999988887764 233222 1122234455556666666655443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5e-14 Score=128.72 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=139.5
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH-
Q 011643 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIV- 258 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~- 258 (480)
..+|...|..+.....-+..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4455555555444333333444455555555555555555555555432 01134445444433321 1111111
Q ss_pred HHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011643 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+..+.....
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 1122221 334555555556666566666666666555553211 4455555555555555555565555555543111
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011643 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+-..|-.+...|.+.++++.|+-.|+++.+..|.+.+....+...+-+.|+.++|+.+++++...+.. |+..--..+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 12233334445555566666666666555555555555555555555566666666666655554433 33333333444
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+...+++++|+..++++.+. ++-+...+..+.+.|.+.|+.+.|..-+--+..+++
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 44555566666666655542 122233344555555555666665555555555544
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=6.1e-13 Score=116.12 Aligned_cols=374 Identities=13% Similarity=0.149 Sum_probs=251.5
Q ss_pred HHHHHHHHHhhc-CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQ-QNYEHS--VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 79 ~A~~~f~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.|+++|+-+..+ +....+ ....+.+.-.+.+.|+++.|+..|+.+.+..|.-...++..|. +...|+-++..+.|.
T Consensus 255 kaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~-~f~i~d~ekmkeaf~ 333 (840)
T KOG2003|consen 255 KAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIIC-AFAIGDAEKMKEAFQ 333 (840)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhh-heecCcHHHHHHHHH
Confidence 788998876543 222222 3345555556788999999999999998877644445555444 445688888888888
Q ss_pred HHHhcCC------------CCCHHHHHHHHH-----HHHccC--ChhhHHHHHHHhhc-CCCCChhh---H---------
Q 011643 156 VMQKYGV------------TQNLAAFNGLLS-----ALCKSK--NVRKAQEIFDCMKD-RFIPDSKT---Y--------- 203 (480)
Q Consensus 156 ~~~~~~~------------~~~~~~~~~ll~-----~~~~~g--~~~~a~~~~~~~~~-~~~~~~~~---~--------- 203 (480)
+|+.... .|+....+..+. -.-+.+ +.++++-.-..+.. -+.|+-.. |
T Consensus 334 kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~ 413 (840)
T KOG2003|consen 334 KLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQ 413 (840)
T ss_pred HHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhh
Confidence 8875422 223333332221 111111 11222111111111 11122110 0
Q ss_pred ---------HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhh-------------------------------HHHH--
Q 011643 204 ---------SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT-------------------------------YGIM-- 241 (480)
Q Consensus 204 ---------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------------------------~~~l-- 241 (480)
-.-..-+.+.|+++.|.+++.-+.+..-+.-... ||.-
T Consensus 414 ~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~ 493 (840)
T KOG2003|consen 414 HAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAAL 493 (840)
T ss_pred hhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHh
Confidence 0122357889999999988877765421111111 1100
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011643 242 ---VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 242 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
.+.....|++++|.+.+.+....+..-....| .+.-.+-..|++++|++.|-++..- +..+..+...+...|...
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 00112357899999999988865422222223 3344567789999999999887543 223677788888899999
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
.+...|.+++.+.... ++.|+.....|...|-+.|+-..|.+++-.--+-.|-+..+..-|...|....-+++++.+|+
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999887664 444788899999999999999999998877777788899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011643 399 YMKLKRFIPSMHTFSVLINGL-CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+..- +.|+..-|..++..| .+.|++..|..+++...+ .++-|...+..|++.+...|.
T Consensus 651 kaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 8765 469999999988765 467999999999999876 467788889899988877774
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.6e-13 Score=125.54 Aligned_cols=287 Identities=14% Similarity=0.091 Sum_probs=229.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHHhcCCChhHHHH
Q 011643 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
=+..+|+..|..+.+. +..+..+...+..+|...+++++|+++|+.+... ...+..+|.+.+-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3678899999996654 3445577778899999999999999999999773 234677888777655332 2222
Q ss_pred HH-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC
Q 011643 222 IF-REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300 (480)
Q Consensus 222 ~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (480)
.+ +.+.+.. +-...+|..+.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 22 2333322 2367899999999999999999999999998864 447889999988899999999999999998864
Q ss_pred CCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHH
Q 011643 301 ILADVAMYN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377 (480)
Q Consensus 301 ~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (480)
++..|+ -+...|.+.++++.|+-.|+...+.++. +.+....+...+-+.|+.++|+++++++....+.|+..-
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 444444 4566899999999999999999987655 677788888889999999999999999999778888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 011643 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
-..+..+...+++++|...++++++.- +-+...|..+...|.+.|+.+.|+.-|..|.+...++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 777888889999999999999998863 225677888889999999999999999999876555443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.3e-12 Score=109.14 Aligned_cols=291 Identities=15% Similarity=0.142 Sum_probs=157.8
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011643 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 190 (480)
++.++|.++|-+|.+.++.+.++.-+|.+.|-+.|..+.|+.+.+.+.++ ||...-
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~--------------------- 104 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFE--------------------- 104 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchH---------------------
Confidence 44555555555555544444444555555555555555555555554442 221100
Q ss_pred HhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC-
Q 011643 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT- 269 (480)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 269 (480)
........|.+-|...|-++.|+.+|..+.+.|. .-......|+..|-...+|++|+++-+++.+.+..+.
T Consensus 105 -------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 105 -------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 0011222334444445555555555555544321 1233444555556666666666666655555443322
Q ss_pred ---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011643 270 ---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 270 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
...|.-+...+....+.+.|..++.+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.++.--+.+...|
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 123444444555556677777777776654322 2333334445667777777777777777776555455666777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CC
Q 011643 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KG 423 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g 423 (480)
..+|.+.|+.++...++.++.+. .++...-..+.+........+.|...+.+-.... |+...+..++..-.. .|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhcccccc
Confidence 77777777777777777776652 2333334444444445555666666555544432 777777777765443 34
Q ss_pred ChHHHHHHHHHHHH
Q 011643 424 IVSDSCVLLEDMIE 437 (480)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (480)
...+.+..++.|..
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 56666777777764
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-11 Score=105.39 Aligned_cols=314 Identities=12% Similarity=0.096 Sum_probs=237.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC---CChhhHHHHHHHHhcC
Q 011643 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI---PDSKTYSILLEGWGKD 213 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 213 (480)
+..++-.....+++.+-.+.....|.+.+...-+....+.-...++++|+.+|+++.+..| .|..+|..++-.--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4455666678899999999999999887777777777777788999999999999988533 2566776665443221
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHH
Q 011643 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
..+..+..-...=-+--..|...+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-+
T Consensus 313 ----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 ----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 122222222111012244677788889999999999999999999876 556788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 011643 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+..++-.. .|-..|-.+.++|.-.+...=|+-.|++..+-.+. |+..|.+|..+|.+.++.++|++.|.+.......+
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99998743 48899999999999999999999999999886333 78999999999999999999999999999866667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 011643 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-P-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 447 (480)
...+..|.+.|-+.++.++|...+.+-++. |.. | ......-|..-+.+.+++++|..+......-
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------- 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------- 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---------
Confidence 889999999999999999999999877652 322 2 1222223455566777777776655444321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 448 GKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.-..++|..+++++.+...
T Consensus 537 ---------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 ---------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred ---------CchHHHHHHHHHHHHHhcC
Confidence 2235677777777766554
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=7.5e-12 Score=104.74 Aligned_cols=304 Identities=13% Similarity=0.106 Sum_probs=210.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC---HH
Q 011643 57 SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN---VE 132 (480)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~ 132 (480)
....++.+-+..+=-.+.+.+++|..+|-.+.+.++ .+..+.-++.+.|.+.|..+.|+++-+.+..+.- +. .-
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l 108 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL 108 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344566666665555666777899999988877543 5777888899999999999999999999887643 21 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCC----hhhHHHHH
Q 011643 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPD----SKTYSILL 207 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~----~~~~~~l~ 207 (480)
....|.+-|...|-+|.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+ +..+. ...|.-+.
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 45567788889999999999999998765 44566788899999999999999999988876 22221 23466677
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHH
Q 011643 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
..+....+++.|..++.+..+.+.+ .+..-..+.+.....|++..|.+.++.+.+.+..--+.+...|..+|...|+.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 7777788888888888888775422 233334456777888888888888888887765555666777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC---CChhHHHHHHH
Q 011643 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR---GETDEAYRVFR 364 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~ 364 (480)
+....+..+.+.. ++...-..+-.......-.+.|...+.+-..+ .|+...+..++..-... |...+.+..++
T Consensus 267 ~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 267 EGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 8888887777653 23333334444333344445555544444433 47777777777655432 23344444445
Q ss_pred HHHh
Q 011643 365 RMIK 368 (480)
Q Consensus 365 ~~~~ 368 (480)
.|..
T Consensus 343 ~mvg 346 (389)
T COG2956 343 DMVG 346 (389)
T ss_pred HHHH
Confidence 4443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=7.6e-11 Score=101.88 Aligned_cols=299 Identities=11% Similarity=0.012 Sum_probs=237.0
Q ss_pred HHHHHH--hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011643 103 MIESLA--KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 103 li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 180 (480)
+..++. -.|+|.+|+++..+-.+.+....-.|..-.++--+.|+.+.+-.++.+.-+.--.++....-+........|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 444443 359999999999998877766666677778888899999999999999988643566777777888899999
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHH
Q 011643 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-------VTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~ 253 (480)
+.+.|..-++++.+..+.++.......++|.+.|++.....++.++.+.|.--+. .+|+.+++-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999998877889999999999999999999999999999998866443 356666666655555555
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
-...++..... .+.++..-..++.-+...|+.++|.++..+..+++..|+ ...+ -.+.+-++.+.-.+..+.-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHH
Confidence 55566665443 245566677888889999999999999999998876655 2222 245566777777777776655
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011643 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 408 (480)
... -++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....-.+|+
T Consensus 323 ~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 323 QHP-EDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 422 2457889999999999999999999997665 578999999999999999999999999998775433333
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.7e-11 Score=107.01 Aligned_cols=225 Identities=15% Similarity=0.091 Sum_probs=177.2
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011643 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
+.-.|+...|..-|+........++ ..|--+..+|....+.++....|.+....+.. ++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3446888899999998888753333 33777788899999999999999999887544 667777777778888999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
..-|++.+...+. +...|-.+..+..+.+.++++...|++..+..|..+..|+.....+...+++++|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999999886433 556677777777889999999999999999999999999999999999999999999999988653
Q ss_pred CC-----CCHHHH--HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011643 405 FI-----PSMHTF--SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 405 ~~-----p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.. .+...+ -.++ .+.-.+++..|..+++++.+.+.+ ....+..+...-...|+.++|.++|++-..+-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 122222 1111 122348999999999999875432 34568889999999999999999999877654
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.1e-10 Score=98.73 Aligned_cols=372 Identities=12% Similarity=0.067 Sum_probs=236.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|-.....-...+++..|.++|+.....+..+...|...+..-.+...+..|..++++.+..= |.-...|--.+.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 4677777777777888999999999999988877888889999999999999999999999998752 222244555566
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011643 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
+=-..|++..|.++|++-.+ ..|+...|++.|..=.+-+.++.|..+|++..- +.|+..+|......-.+.|....+
T Consensus 150 mEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 66678999999999998876 478999999999999999999999999999986 459999999999999999999999
Q ss_pred HHHHHHhHhC-C-CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHhHHHHH---
Q 011643 255 LGIVKSMDST-V-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD--VAMYNALIGAFCKANKFKNVYRV--- 327 (480)
Q Consensus 255 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~--- 327 (480)
..+++..... | -..+...+.++...-..+..++.|.-+|+-.... ++.+ ...|......=-+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999987653 1 1223444555555556677778887777776654 1212 22333333222233433222222
Q ss_pred -----HHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHH--HHHH--------HHHHHHhcCCHHH
Q 011643 328 -----LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTM--------MIKMFCQGGELEK 392 (480)
Q Consensus 328 -----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~--------l~~~~~~~g~~~~ 392 (480)
++.++..++ -|-.+|-..+......|+.+...+++++++..+||-.. .|.. .+-.-....+++.
T Consensus 306 KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 223333322 24445555555555556666666666666655555221 1110 0111123455555
Q ss_pred HHHHHHHHHhCCCCCCHHH----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 393 AFKVWKYMKLKRFIPSMHT----FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 393 A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
+.++++..++. ++....| |......-.++.+...|.+++..++ |.-|...+|...|..-.+.++++...++++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555542 1112222 2222333334455555555555544 344555555555555555555555555555
Q ss_pred HHHhccC
Q 011643 469 KMNLLVK 475 (480)
Q Consensus 469 ~~~~l~~ 475 (480)
+..+.++
T Consensus 462 kfle~~P 468 (677)
T KOG1915|consen 462 KFLEFSP 468 (677)
T ss_pred HHHhcCh
Confidence 5554443
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.6e-10 Score=99.44 Aligned_cols=350 Identities=10% Similarity=0.057 Sum_probs=245.5
Q ss_pred HHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH-----
Q 011643 79 LAFCFFKWAEKQQNYEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY----- 152 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----- 152 (480)
.|+++|+|+.... |+ +.-|.....+|...|+|++..+--....+.+|.-...+..-.+++-..|++++|+.
T Consensus 133 eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 133 EAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred HHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 8999999997754 56 88999999999999999999988888777766555556555666666666665532
Q ss_pred -----------------HHHH---------HHhcC--CCCCHHHHHHHHHHHHcc-----------C-------------
Q 011643 153 -----------------TFNV---------MQKYG--VTQNLAAFNGLLSALCKS-----------K------------- 180 (480)
Q Consensus 153 -----------------~~~~---------~~~~~--~~~~~~~~~~ll~~~~~~-----------g------------- 180 (480)
++.. +.+.+ +-|++....+....+... +
T Consensus 210 ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~ 289 (606)
T KOG0547|consen 210 CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEK 289 (606)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHh
Confidence 1111 11111 224443333333333110 1
Q ss_pred ----ChhhHHHHHHHhhcC--CCC--C---------hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011643 181 ----NVRKAQEIFDCMKDR--FIP--D---------SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243 (480)
Q Consensus 181 ----~~~~a~~~~~~~~~~--~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 243 (480)
.+.+|...+.+-... ..+ + ..+...-...+.-.|+...|..-|+..++....++ ..|..+..
T Consensus 290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~ 368 (606)
T KOG0547|consen 290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAA 368 (606)
T ss_pred hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHH
Confidence 111122222111110 011 1 11222222334457888999999999998654432 23777788
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 011643 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 323 (480)
.|....+.++..+.|....+.+ +.++.+|..-...+.-.+++++|..=|++.+..... +...|-.+..+..+.+.+++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999876 667778888888888889999999999999876422 55666667777788999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC------CHHHH--HHHHHHHHhcCCHHHHHH
Q 011643 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA------DADTY--TMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~--~~l~~~~~~~g~~~~A~~ 395 (480)
++..|++..++ ++-.+..|+.....+...++++.|.+.|+.....-+. ++.++ -.++..-. .+++..|..
T Consensus 447 ~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~ 524 (606)
T KOG0547|consen 447 SMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHH
Confidence 99999999987 4446789999999999999999999999998873222 33322 22222222 389999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
++.+..+.+.. ....|..|...-.+.|+.++|+++|++...
T Consensus 525 Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 525 LLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998755 567899999999999999999999998864
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=5.8e-11 Score=115.23 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=141.1
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHHh---------cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011643 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWG---------KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
.++|...|++..+..|.+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 456666666666554445555554444332 223466777777777665322 4556666666666777777
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011643 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...+++..
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7777777776654 444556666677777777777777777777665322 22222333334555677777777777766
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 011643 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 411 (480)
+...+-+...+..+..++...|+.++|...++++....+.+....+.+...|...| ++|...++.+.+. .-.|....
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG 511 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch
Confidence 54222133345556666667777777777777765544444455555556666665 3666666655432 11122122
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
+ +-..+.-.|+.+.+... +++.+.
T Consensus 512 ~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 512 L--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 22334445555555544 666544
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=6.8e-11 Score=114.73 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=183.8
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 011643 95 HSVRAYHSMIESLAK-----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 95 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~ 160 (480)
.+...|...+.+... .+.+++|..+|++..+.+|.+...|..+...+.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 355555555554321 2346788899999988888777777777665542 23478899999988887
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHH
Q 011643 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 240 (480)
+ +.+..++..+..++...|++++|...|++..+..+.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 6 5677888888888888999999999999988876777888888888999999999999999998876433 2223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011643 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH-
Confidence 444566688899999998888765423345557777888888999999999998876542 223344455555666666
Q ss_pred HhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011643 321 FKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 47777676665531 12222222 33445556777777666 66665
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.2e-10 Score=99.34 Aligned_cols=286 Identities=11% Similarity=0.029 Sum_probs=197.4
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011643 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 242 (480)
..++.....-..-+...+++.+..++++.+.+..+++...+..-|.++...|+..+-..+=.++.+.- +-...+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 33445555555666677788888888888888777787777777778888888777777777777652 33567777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011643 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
--|...|+..+|.+.|.+....+ +.-...|-.+...++-.|.-|+|...+....+.= +-..--+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 77777788888888888776543 2234567777788888888888887777665421 101111222334567778888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011643 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (480)
.|...|.+.....+ -|+...+-+.-.....+.+.+|..+|+..... .+.-..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 88888887776532 25666666666666677888888888776631 11133457778888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011643 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
.+++....... +..++..+.-.|...|+++.|...|.+.+. +.|+..+...++..+.
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 88888776543 777888888788888888888888888764 5677766666665443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=7.7e-11 Score=101.91 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=108.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011643 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 351 (480)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 34444455555555555555555544432 123344444555555555555555555555544222 3334444555555
Q ss_pred hCCChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 011643 352 GRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (480)
..|++++|.+.++.+... .+.....+..+..++...|++++|...+++....... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 556666666666555541 1223345555666666666777777666666654322 3455666666666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
..++++.+. ...+...+..+...+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777766654 2334455555566666667777777666665543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=4.5e-11 Score=103.37 Aligned_cols=164 Identities=9% Similarity=0.088 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44555555666666666666666666655555455555555556666666666666665555543 33444455555555
Q ss_pred HccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011643 177 CKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|.+.+++.... .+.....+..+...+...|++++|.+.+.+..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555431 111223333344444444444444444444443321 1223333344444444444444
Q ss_pred HHHHHHhH
Q 011643 255 LGIVKSMD 262 (480)
Q Consensus 255 ~~~~~~~~ 262 (480)
...+++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444443
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=1.3e-11 Score=116.50 Aligned_cols=272 Identities=15% Similarity=0.190 Sum_probs=134.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC
Q 011643 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 231 (480)
++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.. ..+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566677777777777777777777777666 6666655 33445566777777766666665554
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 011643 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK-NGILADVAMYNA 310 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ 310 (480)
.|...||..+..+|...||... ++..++ -...+...+...|--.....++..+.- .+..||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4666677777777777777654 111111 011122233333333333333333211 112222221
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCC
Q 011643 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 389 (480)
.+......|.++.+.+++..+...... . ++..+++-+... ..-.+++....... ..+++.+|..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 222223334444444444333221110 0 011112222221 11122222222221 14566666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011643 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 390 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
++.|..++.+|.+.|++.+.+-|..++-+ .+...-+..++..|.+.|+.|+..|+.-.+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666666666666555555555444 45555556666666666666666666555544444333
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=8.5e-10 Score=103.55 Aligned_cols=293 Identities=14% Similarity=0.173 Sum_probs=171.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc---
Q 011643 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS--- 179 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 179 (480)
....+...|++++|++.++.-...-+............+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34566788999999999987555444556667778888899999999999999999886 45555666666665222
Q ss_pred --CChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChh-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011643 180 --KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP-RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 180 --g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
.+.+...++++++.... |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|....+..-..+
T Consensus 89 ~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24677788888877654 33333333322222222232 345556666777765 345555555655544444455
Q ss_pred HHHHhHhC----C----------CCcCH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011643 257 IVKSMDST----V----------CRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 257 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
++...... + -+|+. .++..+...|...|++++|++.+++.++.... .+..|..-.+.+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55544321 1 12232 23344455566666666666666666665311 24555555666666666
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCHH------HH--HHHHHHHHhcCCHH
Q 011643 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADAD------TY--TMMIKMFCQGGELE 391 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~------~~--~~l~~~~~~~g~~~ 391 (480)
+.+|.+.++.....+.. |...=+..+..+.+.|+.++|.+++....+ +..|-.. .| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666665433 444555555666666666666666666554 2111111 11 33455566666666
Q ss_pred HHHHHHHHHHh
Q 011643 392 KAFKVWKYMKL 402 (480)
Q Consensus 392 ~A~~~~~~~~~ 402 (480)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=5.4e-09 Score=96.03 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 011643 371 EADADTY--TMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447 (480)
Q Consensus 371 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 447 (480)
+|....| ..+++.|-+.|+++.|...++..+.+- |+ +..|..-.+.+.+.|++++|..++++..+.+ .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 5555544 456777888899999999999888763 44 3455555677888899999999999888765 3555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011643 448 GKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
..-.+...++.+.++|.++..+..+-+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 567777888888888888877765543
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=9.7e-10 Score=103.17 Aligned_cols=293 Identities=14% Similarity=0.091 Sum_probs=143.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcC-
Q 011643 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD- 213 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 213 (480)
--....+...|++++|++.++.-... +.............+.+.|+.++|..++..+....|.|..-|..+..+..-.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 33444556667777777776554332 2333444555566666677777777777777666566666666666655222
Q ss_pred ----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH
Q 011643 214 ----PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 214 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 23455566666665442 3322222222112211122 23334444455555322 34444444444444443
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH
Q 011643 289 AVDTFLEMEKN----G----------ILADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLI 351 (480)
Q Consensus 289 a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 351 (480)
..+++...... + -+|+. .++..+...|...|++++|...+++.++. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 44444443221 0 01222 12233444555556666666666555554 222 344555555555
Q ss_pred hCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhCC
Q 011643 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TF--SVLINGLCDKG 423 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g 423 (480)
+.|++.+|.+.++.+......|..+-+-.+..+.++|++++|.+++..+.+.+..|-.. +| .....+|.+.|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666555555555555555555555555666666665555555444322111 11 12234455555
Q ss_pred ChHHHHHHHHHH
Q 011643 424 IVSDSCVLLEDM 435 (480)
Q Consensus 424 ~~~~a~~~~~~~ 435 (480)
++..|++-|...
T Consensus 320 ~~~~ALk~~~~v 331 (517)
T PF12569_consen 320 DYGLALKRFHAV 331 (517)
T ss_pred hHHHHHHHHHHH
Confidence 555555555443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2.4e-11 Score=101.90 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=166.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc
Q 011643 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
+.+..+|.+.|.+.+|.+.++..++. .|-..||..+-..|.+..++..|+.++.+-.+. ++.++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888877765 455667777778888888888888888877665 233444445566777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 011643 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
++.++|.++|+...+.. +.++.....+...|.-.++.+.|...++++.+.|.. ++..|+.+.-+|.-.++++-++-.|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888877653 235556666666777778888888888888888776 6777777877788888888888888
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 364 RRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 364 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.+.... ...-..+|..+....+..|++.-|.+.|+-...++.. +...++.+.-.-.+.|+.++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 877762 2223456777777777788888888888877766533 567777777777788888888888877765
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.9e-10 Score=100.58 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+......-...+-..+++.+..++.+.+.+.. |+....+..-|.++...|+..+-..+=.++.+..|..+.+|-.+.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45556666677788899999999999998876 77777888888899999999988888888888888899999999999
Q ss_pred HhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHH
Q 011643 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|.-.|+..+|.+.|.+....... =...|......|.-.|..++|...+...-+.- +-...-+--+.--|.+.+.++.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999988754211 24678888999999999999999888765431 11111123344567788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhCCChhHHHHHH
Q 011643 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----G--VAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
.+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+..+.. + ......+++.|..+|.+.+..++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999998875 3447888888888888889999999999987732 1 1124457889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011643 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
++.....+.+..++.++.-.|...|+++.|...|.+.... .|+..+-..++..+.
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764 477766666665443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.4e-11 Score=101.00 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=197.5
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHh
Q 011643 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY-GIMVDVLCK 247 (480)
Q Consensus 169 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~ 247 (480)
-+.+..+|.+.|.+.+|.+.|+...+. .|.+.||..|..+|.+..++..|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 367889999999999999999887764 568889999999999999999999999998875 4555555 456788888
Q ss_pred cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011643 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
.++.++|.++++...+.. +.+......+...|.-.++++-|+..|+++.+.|+. ++..|+.+.-+|.-.++++-+...
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998764 556666666777788889999999999999999987 888899998888889999999999
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 328 LKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 328 ~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
|.+....-..|+ ...|-.+.......||+..|.+.|+-.......+...++.|.-.-.+.|++++|..+++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887644444 35677788888889999999999999998888889999999999999999999999999987754
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=2.5e-10 Score=105.74 Aligned_cols=240 Identities=18% Similarity=0.169 Sum_probs=167.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C-CCcCHH-HHHHHHHHhhccCCHHHHHHHHHHHHHC-----CC-
Q 011643 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDST-----V-CRPTSF-IYSVLVHTYGVENRIEDAVDTFLEMEKN-----GI- 301 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~- 301 (480)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566778888888888888888776543 1 122322 2334777888888888888888887531 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CC-CCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHhc----
Q 011643 302 -LADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-----GV-APNS-RTCNIILNGLIGRGETDEAYRVFRRMIKL---- 369 (480)
Q Consensus 302 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 369 (480)
+.-..+++.|..+|.+.|++++|...+++..+. |. .|.. ..++.+...|...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112345667777888999988888877766542 11 1222 23566677788889999999998887761
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH-
Q 011643 370 CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE- 437 (480)
Q Consensus 370 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 437 (480)
..+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2457889999999999999999999987742 11 12 245677888889888999989988887653
Q ss_pred ---cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011643 438 ---KGI-RPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 438 ---~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.|. .|+ ..+|..|...|.+.|+++.|.++.+.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 232 222 3468889999999999999999998887543
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=5.5e-08 Score=89.42 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..|.+|...|++.|.+++|.++|++....
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 36788999999999999999999877654
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-07 Score=82.70 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=210.0
Q ss_pred cCChhhHHH--HHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 011643 179 SKNVRKAQE--IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV-TYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 179 ~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 255 (480)
.++...|.. ++-+....++.|+.....+..++...|+.++|...|++.... .|+.. ......-.+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 444444444 444444577788899999999999999999999999988764 23322 2222233456788888888
Q ss_pred HHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 011643 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 335 (480)
.+...+.... .-+...|..-+......++++.|+.+-++.++.... +...|-.-...+...|+.++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8888876543 233444544555666778889999888888765322 44455444567788899999999999887753
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 011643 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI-KMFC-QGGELEKAFKVWKYMKLKRFIPS-MHTF 412 (480)
Q Consensus 336 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 412 (480)
+ -+...|..|+.+|...|.+.+|...-+...+..+.+..+...+. ..+. .-..-++|.++++...... |+ ....
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV 441 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAV 441 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHH
Confidence 2 26789999999999999999999888888877777777776653 3333 2334578888888877654 54 3556
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+.+...|...|+.++++.+++..+. ..||...-..|.+.+...+.+++|...+....++++.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6677788889999999999999886 4678888888888888889999999888888777664
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=1.3e-07 Score=88.95 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
|......+.+.+..++|...+.+..+..+..+..|......+...|..++|.+.|......++. ++....++...+.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh
Confidence 4455667788899999999999998888888999999999999999999999999998876633 567888999999999
Q ss_pred CChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 423 GIVSDSCV--LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 423 g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|+..-|.. ++..+.+.+ +.++..|..+...+.+.|+.++|.+.|....+++..
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 98888887 999999876 458899999999999999999999999999888653
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.7e-10 Score=106.94 Aligned_cols=345 Identities=13% Similarity=0.112 Sum_probs=208.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 011643 89 KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 89 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
+..|..|+..+|..+|..|+..|+++.|- +|..|..+.. .+...|+.++.+..+.++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 44588899999999999999999999998 9999988877 78888999999988888887665 68889
Q ss_pred HHHHHHHHHHccCChhh---HHHHHHHhhcCCCC----ChhhHHH---------------HHHHHhcCCChhHHHHHHHH
Q 011643 168 AFNGLLSALCKSKNVRK---AQEIFDCMKDRFIP----DSKTYSI---------------LLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 168 ~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~----~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~ 225 (480)
+|..|..+|...||+.. ..+.++.+...+.+ ....|-. .+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999654 33323332221111 1111111 11112222333333333333
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011643 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 226 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
+....- +. .+..+++-+.... .-..++........-.|++.+|..++++-...|+.+.|..++.+|.+.|++.+.
T Consensus 165 ~Pvsa~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 165 VPVSAW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CCcccc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 321110 00 1111233333322 223333333332222689999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
+.|..++-+ .++..-+..++.-|.+.|+.|+..|+..-+..+..+|....+....+.. .-.+...+..+.++..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~---hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA---HGFTAAVRSAACRGLL 313 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh---hhhhHHHHHHHhcccH
Confidence 888888755 7888889999999999999999999998888888765532222211110 0011222333333311
Q ss_pred hcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHHhc
Q 011643 386 QGGELEK-----AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRP-SGETFGKLRKLLIKE 457 (480)
Q Consensus 386 ~~g~~~~-----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~ 457 (480)
...+++. ....+.+..-.|+.....+|.... -...+|+-++..++...+..-. +.+ +...|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1112211 111112222224433334444333 3445788888888888875321 222 233455555555543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-08 Score=87.94 Aligned_cols=269 Identities=11% Similarity=0.046 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.|......+...+...|+.++|+..|+.....+ +-+........-.+...|+.+....+...+-........-|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 455555555555556666666666555554432 1122222222333344555555555555444332333334444444
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH
Q 011643 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
.+....++..|+.+-++.++.... +...|..-.+.+...|+.++|.--|+...... +-+...|..|+.+|...|.+.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 444555555666555555543211 33334434445555566666655555554432 3345556666666666666665
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHH-HHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHH
Q 011643 289 AVDTFLEMEKNGILADVAMYNALI-GAF-CKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRR 365 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 365 (480)
|.-+-+...+. .+.+..+...+. ..+ .....-++|..+++.-... .|+ ....+.+...+...|..+.+..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 55444443321 112333333331 111 1122235555555555443 232 22344455555566666666666665
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
... ..+|....+.|.+.+...+.+++|...|....+.+
T Consensus 464 ~L~-~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLI-IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHh-hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 554 23555555666666666666666666666665544
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.8e-08 Score=85.91 Aligned_cols=380 Identities=9% Similarity=0.033 Sum_probs=225.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
-|+.+++..... +-+-...+-.++...+.+.|++++|...+..+.+...++.+.+..|.-.+.-.|.+.+|..+-....
T Consensus 40 GAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 40 GAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred hHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 577777765422 2112223445566677899999999999999988776888888888888888899999988865543
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 238 (480)
.++-.-..++...-+.++-++-..+.+.+... ..--..|.......-.+++|++++......+ |.-...
T Consensus 119 -----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 119 -----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred -----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 33444445666666778877777666666541 2223334444444456899999999998653 444444
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHH--------------HCC---
Q 011643 239 GIMV-DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME--------------KNG--- 300 (480)
Q Consensus 239 ~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~--- 300 (480)
|.-+ -+|.+..-++-+.+++.-..+. ++.++...+..+....+.=.-..|.+-.+.+. +++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 4433 4667788888888888877665 23344444444333322211111222112211 110
Q ss_pred ---------CCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-----------------
Q 011643 301 ---------ILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG----------------- 349 (480)
Q Consensus 301 ---------~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----------------- 349 (480)
+-|. +..-..++--|.+.+++.+|..+.+++... .|-......++.+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 0010 112223344567788888888877665421 2222222222111
Q ss_pred ------------------------HHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011643 350 ------------------------LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 350 ------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 405 (480)
+.-..++++.+-.+..+..-...|...--.+.++++..|++.+|+++|-.+..-.+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 11111223333333333321122222223567888889999999999988776555
Q ss_pred CCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 011643 406 IPSMHTFS-VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+ |..+|. .+.++|.+.++++-|+.++-++- -..+..+ +..+..-|.+.+.+=-|-+.+..+..+++.|
T Consensus 425 k-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 425 K-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred h-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 5 556665 45678889999999988766553 2223333 3445577888999888889999999988876
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=4.6e-07 Score=83.61 Aligned_cols=383 Identities=13% Similarity=0.142 Sum_probs=200.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 011643 82 CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY- 160 (480)
Q Consensus 82 ~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 160 (480)
..|+.+.+.-+.......|...+......+-++.+..++++..+- ++..-.--|..+++.+++++|-+.+......
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCch
Confidence 344444333333333344555555555555555666666555544 3333445556666666666666666555321
Q ss_pred -----CCCCCHHHHHHHHHHHHccCChh---hHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC
Q 011643 161 -----GVTQNLAAFNGLLSALCKSKNVR---KAQEIFDCMKDRFIPD-SKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 161 -----~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 231 (480)
..+.+-..|..+-...++..+.- ....++..+...++.. ...|+.|.+.|.+.|.+++|.++|++....-
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v- 278 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV- 278 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-
Confidence 11333444444444444333221 2223333333322211 2446666666777777777766666654321
Q ss_pred CCChhhHHHHHHHHH-----------------------------------------------------------------
Q 011643 232 NPDIVTYGIMVDVLC----------------------------------------------------------------- 246 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~----------------------------------------------------------------- 246 (480)
.+..-|..+.++|.
T Consensus 279 -~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 279 -MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred -eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 12222222222221
Q ss_pred -hcCCHHHHHHHHHHhHhCCCCc------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 011643 247 -KAGRVDEALGIVKSMDSTVCRP------TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD---VAMYNALIGAFC 316 (480)
Q Consensus 247 -~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 316 (480)
..|+..+....+.+..+.- .| ....|..+...|...|+++.|..+|++..+-..+-- ..+|......=.
T Consensus 358 l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 1233333344444433221 11 123466677777888888888888887766433211 234444445555
Q ss_pred HcCCHhHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHH
Q 011643 317 KANKFKNVYRVLKDMNSKGVA----------P-------NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
+..+++.|.+++++.....-. | +...|...+...-..|-++....+++++...--.++.....
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 666777777777665432111 1 22234445555555677777777777777743444444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCCHHHHH--HHHHH
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGETFG--KLRKL 453 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~ 453 (480)
....+-...-++++.+++++-+..-..|++ ..|+..+.-+.+. .+.+.|..+|+++++ |.+|...-+- .....
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 455555566677787777766655444554 4666666655442 357888888888888 5555443222 22233
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011643 454 LIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~ 471 (480)
-.+.|....|..++++..
T Consensus 596 EEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 334677777777777654
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=4.7e-12 Score=78.79 Aligned_cols=50 Identities=40% Similarity=0.761 Sum_probs=33.9
Q ss_pred CChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011643 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247 (480)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 247 (480)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=9e-08 Score=88.24 Aligned_cols=381 Identities=13% Similarity=0.135 Sum_probs=218.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+|...-....+... .+.+.|+.+.-.+...+++++|+..|......++.|...|.-+.-.-++.|+++........+.
T Consensus 59 ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 59 EAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56555555544332 5667777777667777777777777777777766676666666666666666666666665555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC--CCChhhHHHHH------HHHhcCCChhHHHHHHHHHHHcC
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILL------EGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~m~~~~ 230 (480)
+.. +.....|..+..++.-.|+...|..+++...+.. .|+...+.... ....+.|..++|++.+..-...
T Consensus 137 ql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 137 QLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 532 2233445556666666667777777666665522 34444443322 2334455666666655544322
Q ss_pred CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHH-HHHHHHHhhccCCHHHHH-HHHH-------------
Q 011643 231 CNPDIVTY-GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI-YSVLVHTYGVENRIEDAV-DTFL------------- 294 (480)
Q Consensus 231 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~-~~~~------------- 294 (480)
..|...+ .+-...+.+.+++++|..++..+.... ||... |..+..++.+-.+.-++. .+|.
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 1122222 233445566666666666666666552 33333 333333333222222222 3333
Q ss_pred ---------------------HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CC----------CCCC
Q 011643 295 ---------------------EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KG----------VAPN 339 (480)
Q Consensus 295 ---------------------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~ 339 (480)
.+.+.|+++ ++..+...|-.-...+-..++...+.. .| -+|+
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 333344332 222222222221111111111111111 11 1344
Q ss_pred hh--hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011643 340 SR--TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417 (480)
Q Consensus 340 ~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 417 (480)
.. ++-.++..+-..|+++.|+.+++.+....|.-+..|..-.+.+...|++++|..++++..+.+. ||...-..-+.
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAK 447 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHH
Confidence 43 3445677788899999999999999976666667787888999999999999999999998763 36555556666
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 011643 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGET--------FGKL--RKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
-..++++.++|.++.....+.|. +... |-.+ ..+|.+.|++-.|.+-+..+.+
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 77888999999999999987764 2211 2111 4567778777777665555443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=7.4e-09 Score=83.17 Aligned_cols=189 Identities=10% Similarity=0.006 Sum_probs=83.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011643 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
+.-.|...|+...|..-+++..+.+ +.+..++..+...|.+.|+.+.|.+.|++..+.... +..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3344445555555555555554443 333444444444455555555555555544443211 33444444444444445
Q ss_pred HhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 321 FKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
+++|...|++......-+ -..+|..+.-+..+.|+.+.|.+.|++..+..+..+.+...+.+...+.|++-.|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 555555444444431111 1234444444444444444444444444444344444444444444444444444444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 011643 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (480)
....+. ++..+....|+.-...|+.+.+-++=
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 443332 34444444444444444444444433
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=8.7e-08 Score=88.61 Aligned_cols=199 Identities=13% Similarity=-0.029 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LN-VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-- 171 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 171 (480)
+..|..+...+...|+.+.+...+.......+ .+ .+........+...|++++|.+.+++..+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44555555555566666666666665554443 22 1222223334456677777777777766653 334434332
Q ss_pred -HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011643 172 -LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 172 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 250 (480)
+.......+....+.+.+.......+........+...+...|++++|...+++..+... .+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 111112234444444444432222222333444555566667777777777777666532 234455566666666777
Q ss_pred HHHHHHHHHHhHhCCC-CcCH--HHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011643 251 VDEALGIVKSMDSTVC-RPTS--FIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
+++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777776666654321 1121 223345566666666666666666654
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=9.4e-09 Score=82.57 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+..-+.-.|...|++..|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344455567777777777777777777777777777777777777777777777777777654 4556677777777777
Q ss_pred cCChhhHHHHHHHhhc--CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011643 179 SKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
.|.+++|...|++... ....-..+|..+.-+..+.|+++.|...|++.++.... ...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777665 33344566777777777777777777777777765322 33455566666677777777777
Q ss_pred HHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011643 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.++.....+. ++....-..|+.--..|+-+.+-+.=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766653 6666666666666666666666655555544
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.8e-11 Score=76.19 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011643 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.6e-09 Score=96.94 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=134.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhC-----C--CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----CCC-CCC-H
Q 011643 240 IMVDVLCKAGRVDEALGIVKSMDST-----V--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK-----NGI-LAD-V 305 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~ 305 (480)
.+...|...+++++|..+|+++... | .+--..+++.|..+|.+.|++++|...++...+ .|. .|. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555666777777777777666431 1 112234566666677777777777666665432 111 112 2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHhc--------C
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSK---GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--------C 370 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~ 370 (480)
..++.+...++..+++++|..+++...+. -+.++ ..+++.+...|...|++++|+++++.++.. .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23555666778888888888888766542 11222 357888999999999999999999988761 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMK----LKRFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
.-....++.|...|.+.+.+.+|.++|.+.. ..|+. |+ ..+|..|...|...|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2224567888999999999999999888654 23322 23 4688999999999999999999988876
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.4e-08 Score=90.36 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=132.9
Q ss_pred CChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHH
Q 011643 214 PNLPRAREIFREMVDTG-CNPD--IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 1121 3446666667777777777777777777654 445677777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 011643 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
..|++..+.... +..++..+...+...|++++|...++...+.. |+..........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765322 45566666777777788888888887777653 332211111222344567778887776655433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 011643 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK---RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
.++...+ . ......|+...+ +.++.+.+. .+ .| ....|..+...+.+.|++++|...|++..+.++ ||.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chH
Confidence 3332221 1 222234554443 233333321 10 01 235677788888888888888888888887542 344
Q ss_pred HHHH
Q 011643 445 ETFG 448 (480)
Q Consensus 445 ~~~~ 448 (480)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.2e-08 Score=85.06 Aligned_cols=328 Identities=12% Similarity=0.138 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LLSALC 177 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 177 (480)
-+.+.+..+.+..+++.|++++..-.++.+.+......|...|....++..|-..++++-.. -|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 35566667788889999999999998888888889999999999999999999999998764 455444432 245566
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhh--HHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011643 178 KSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.+.+..|..+...|... ++... ...-.......+++..+..++++....| +..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 788899999999888753 22222 2222223345788888988888877433 4445555554567889999999
Q ss_pred HHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH----------------------------HH
Q 011643 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV----------------------------AM 307 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------------~~ 307 (480)
+-|+...+.+--.+...|+..+ ++.+.|+++.|++...+++++|++..+ ..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 9999887755444556676554 455678999999999999998876311 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011643 308 YNALIGAFCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
+|.-...+.+.|+++.|.+-+.+|..+ ....|+.|...+.-.= ..+++.+..+-+.-+....|-...|+..++-.||+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 222222356778888888888887543 2344666666554332 23456566666666666566777889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-CCChHHHHHHHHHHH
Q 011643 387 GGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCD-KGIVSDSCVLLEDMI 436 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 436 (480)
..-++-|..++.+-...-.. .+...|+ ++.++.- .-..++|.+-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 98888888887654322111 1333444 3344433 345777777666554
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.4e-08 Score=90.25 Aligned_cols=93 Identities=15% Similarity=-0.035 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|...|++..+..+.+..+|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333333344444444444444433332 223333444444444444444444444444332233333333333333344
Q ss_pred CChhHHHHHHHHHH
Q 011643 214 PNLPRAREIFREMV 227 (480)
Q Consensus 214 ~~~~~a~~~~~~m~ 227 (480)
|++++|.+.|++..
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.8e-08 Score=82.03 Aligned_cols=398 Identities=9% Similarity=-0.008 Sum_probs=253.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH
Q 011643 57 SGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134 (480)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (480)
.|..+....+..++..+-++.+ .|+++...-.+..+ .+....+.+...|-...++..|-+.++++....|.-..--
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3455555556677777766665 68888765544432 4777888888899999999999999999987665222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 011643 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL--SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
-.-...+.+.+.+..|+.+...|... ++...-..-+ ......+++..+..++++.... .+..+.+...-...+
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeec
Confidence 22356677889999999999888753 2222111112 2234678999999999998742 255566666667788
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCc-------------CH---------
Q 011643 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-------------TS--------- 270 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------- 270 (480)
.|+++.|.+-|+...+.+--.....|+..+-. .+.|+++.|++...++...|++. |.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 99999999999998876544466778877754 46799999999999999988542 11
Q ss_pred ------HHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011643 271 ------FIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 271 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
..+|.-...+.+.|+++.|.+.+-.|.-+ ....|+.|...+.-. --.+++.+..+-+.-+.+.++- ...||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHH
Confidence 11222333456789999999988888532 234567776655422 2245666677777777776554 45789
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 011643 344 NIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFC-QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL- 419 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~- 419 (480)
..++-.||+..-++.|-+++.+-.. -.-.+...|+. +.++. ..-..++|.+-+..+...- ....-...+..-
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe 389 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQE 389 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 9999999999999999888876432 11233444443 34433 3457788887776655421 111112222221
Q ss_pred HhCCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 420 CDKGIVSDS----CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 420 ~~~g~~~~a----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.+..+-+++ ++-+++.++. -..+..+-...+.+..++..+++++..-.+
T Consensus 390 ~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 390 ARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 122222222 2222332221 122333344556777888888888876554
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=2.1e-07 Score=86.10 Aligned_cols=305 Identities=10% Similarity=-0.021 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHH--
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNL-AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI-- 205 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 205 (480)
....|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++.....|.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 84 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHL 84 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhH
Confidence 344566666677777777777666666544321 1222 222222335567788999988888887765656655552
Q ss_pred -HHHHHhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc
Q 011643 206 -LLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 206 -l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
........+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..... +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11222224445555555544 1112222 2333455567788888888888888888765 44566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhCCCh
Q 011643 284 NRIEDAVDTFLEMEKNGI-LADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGV-APNSRTC-N--IILNGLIGRGET 356 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~ 356 (480)
|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776432 1222 2344667778888888888888888754322 1111111 1 223333334443
Q ss_pred hHHHHH--HHHHHh-cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhCC
Q 011643 357 DEAYRV--FRRMIK-LCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--------SMHTFSVLINGLCDKG 423 (480)
Q Consensus 357 ~~a~~~--~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g 423 (480)
..+.++ +..... ..+ ...........++...|+.+.|...++.+......+ ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 111111 111 111222245666667778888888877765422110 1111222223345677
Q ss_pred ChHHHHHHHHHHHH
Q 011643 424 IVSDSCVLLEDMIE 437 (480)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (480)
+.++|.+.+...+.
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777654
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-07 Score=85.68 Aligned_cols=365 Identities=15% Similarity=0.110 Sum_probs=226.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|...|-.+....+ +|-..|..-..+|++.|++++|.+=-.+.++..|.=+..|.....++.-.|++++|+.-|.+-.
T Consensus 20 ~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 20 TAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 78999977766654 6889999999999999999999988888888877667789999999999999999999999888
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHH------HHhhc----CCCCChhhHHHHHHHHhcC----------CChhH
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKD----RFIPDSKTYSILLEGWGKD----------PNLPR 218 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------~~~~~----~~~~~~~~~~~l~~~~~~~----------~~~~~ 218 (480)
+.. +.+...++.+..++... . .+.+.| ..+.. ........|..++..+-+. ..+..
T Consensus 98 ~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 98 EKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred hcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 765 55667777787776211 0 011111 11110 0000111222222222110 00111
Q ss_pred HHHHHHH-----HHHcC-------CCC------------C----------hhhHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 011643 219 AREIFRE-----MVDTG-------CNP------------D----------IVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 219 a~~~~~~-----m~~~~-------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
+.-.+.. +...| ..| | ..-...+.++..+..++..+.+-+......
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 1111100 00011 111 0 011234666677777888888888887766
Q ss_pred CCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011643 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA-------LIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
. .+...++....+|...|.+......-....+.|.. ...-|+. +..+|.+.++++.+...|.+.......
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 4 45556677777888888888777776666655432 1222222 333566677888888888876654333
Q ss_pred CChhhHH-------------------------HHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011643 338 PNSRTCN-------------------------IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 338 p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
|+...-. .-...+.+.|++..|.+.+.++++..|.|...|....-+|.+.|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 3322211 112335667888888888888888778888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011643 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 393 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
|.+-.+..++.+. +....|..=..++....+++.|.+.|++.++.. |+..-+...+.-|.
T Consensus 411 aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 411 ALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 8887777777642 234555555556666677888888888877643 44444433333333
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=3.4e-06 Score=77.30 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA--RVQKVEEAVYTFNV 156 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~ 156 (480)
+|.+.-+.+.... +.+...+..-+-++.+.++|++|+.+.+.-......+... +=.+|| +.+..++|+..++-
T Consensus 30 ~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~---fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 30 EAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF---FEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred HHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh---HHHHHHHHHcccHHHHHHHHhc
Confidence 6788877776543 4677777777778888888888886555422111111111 234444 67888888888872
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC
Q 011643 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 195 (480)
.. +.+..+...-...+.+.|++++|..+|+.+.+.
T Consensus 105 ~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 105 LD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22 223345555566778889999999999988653
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.2e-06 Score=91.59 Aligned_cols=338 Identities=9% Similarity=0.039 Sum_probs=211.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC-------CC--hhhHHHHHHH
Q 011643 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-------PD--SKTYSILLEG 209 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~--~~~~~~l~~~ 209 (480)
......|+++.+..+++.+.......++.........+...|+++++...+........ +. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653221112222333444556678999999998887654211 11 1122233445
Q ss_pred HhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-CcCHHHHHHHHHHh
Q 011643 210 WGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-RPTSFIYSVLVHTY 280 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~ 280 (480)
+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. ......+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56789999999999988763211121 23455666677899999999998887542 11 11123455667778
Q ss_pred hccCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCC--ChhhHHHHHHH
Q 011643 281 GVENRIEDAVDTFLEMEK----NGIL--A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--VAP--NSRTCNIILNG 349 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~ 349 (480)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998887654 2211 1 22334455566777899999999988875531 112 22344445667
Q ss_pred HHhCCChhHHHHHHHHHHhc--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 011643 350 LIGRGETDEAYRVFRRMIKL--CEADADTY-----TMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGL 419 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 419 (480)
+...|+.+.|.+.++.+... .......+ ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 78899999999999887651 11111111 1122445567899999998877554221111 11234566778
Q ss_pred HhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 420 CDKGIVSDSCVLLEDMIEK----GIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
...|+.++|...++++... |..++ ..+...+..++.+.|+.++|...+.+..++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8899999999999988743 32222 235666778888999999999999998876543
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=9.2e-09 Score=90.08 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011643 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
+.+|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+.....+.++.+...++-+....|+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 44444444443332 2233333444444444444444444444443333333333333333333333333
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.9e-08 Score=88.09 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=150.1
Q ss_pred HccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011643 177 CKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
.-.|++..++.-.+ ... ....+......+.+++...|+++.++ .++... -.|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554443 211 11112333444555666666654433 222222 2444444444444333334445555
Q ss_pred HHHHHhHhCCCC-cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011643 256 GIVKSMDSTVCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555444333322 23333333445667778888888777543 25666777788899999999999999999875
Q ss_pred CCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011643 335 GVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 410 (480)
. +..+...+..++.. .+.+.+|..+|+++....++++.+.+.+..++...|++++|.+++++....+.. +..
T Consensus 161 --~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 --D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp --S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred --C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 2 33445555554433 346899999999988877889999999999999999999999999998876643 667
Q ss_pred HHHHHHHHHHhCCCh-HHHHHHHHHHHHc
Q 011643 411 TFSVLINGLCDKGIV-SDSCVLLEDMIEK 438 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 438 (480)
+...++.+....|+. +.+.+++.++...
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777788887888887 6677888888764
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-06 Score=77.51 Aligned_cols=320 Identities=13% Similarity=0.078 Sum_probs=207.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhc---CCCCCHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV---YTFNVMQKY---GVTQNLAA 168 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~ 168 (480)
.-+..|+....++.-.|++++|+.-|.+-.+..+.+...+..+..++.......+.. .++..+... ........
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 467899999999999999999999999999988888888888888883221111110 111111110 00001122
Q ss_pred HHHHHHHHHcc----------CChhhHHHHHHHh------hc-------CCCC----------------------ChhhH
Q 011643 169 FNGLLSALCKS----------KNVRKAQEIFDCM------KD-------RFIP----------------------DSKTY 203 (480)
Q Consensus 169 ~~~ll~~~~~~----------g~~~~a~~~~~~~------~~-------~~~~----------------------~~~~~ 203 (480)
|..++..+-+. ..+..+.-.+... .. ...| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 33333222111 0011111111110 00 0011 00124
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHH-------HH
Q 011643 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS-------VL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l 276 (480)
..+.+...+..+++.|++-+....+.. -+..-++....+|...|.+.++....+...+.|. ....-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 567777788889999999999888764 3555566777788888888888777776655542 1222222 23
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------------------HHHHHHHHHcCCHhHHHHHHHHH
Q 011643 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------------------NALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
..+|.+.++++.++..|.+.......|+...- ..-...+.+.|++..|...|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44667778899999988887654333332111 11133477889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011643 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 411 (480)
+...+. |...|..-.-+|.+.|.+..|++-.+...+..++....|..=..++....++++|.+.|++..+.+ |+..-
T Consensus 385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e 461 (539)
T KOG0548|consen 385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE 461 (539)
T ss_pred HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 998643 788999999999999999999999888888777778888877778888889999999999999876 55444
Q ss_pred HHHHHHHHH
Q 011643 412 FSVLINGLC 420 (480)
Q Consensus 412 ~~~l~~~~~ 420 (480)
+..-+.-|.
T Consensus 462 ~~~~~~rc~ 470 (539)
T KOG0548|consen 462 AIDGYRRCV 470 (539)
T ss_pred HHHHHHHHH
Confidence 433333333
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-06 Score=81.80 Aligned_cols=311 Identities=9% Similarity=0.005 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011643 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 193 (480)
.++++.+++..+.++.|+.....+.--|+.+++++.|.+...+..+.+-..+...|..|.-++...+++..|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45666777777666655555555555666777777777777777766545666777777767777777777777777666
Q ss_pred cCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC--CCCcCHH
Q 011643 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPTSF 271 (480)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 271 (480)
+.++.|......-+..-...++.++++.....+... |...- .....++-....+....+.-. .......
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccch
Confidence 544444444333444444456666666655555421 00000 000111111111121111100 0011122
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011643 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILA--D------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
++..+.......+........ +......| + ...|......+.+.++.++|...+.+..... ......|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 222222211111100000000 11111111 1 2334555667788888899988888877652 2245566
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011643 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK--VWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
......+...|..++|.+.|.......|.++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+-+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK 766 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666777888999999999999888788888899999999999998888887 99999988754 88999999999999
Q ss_pred CCChHHHHHHHHHHHHc
Q 011643 422 KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 422 ~g~~~~a~~~~~~~~~~ 438 (480)
.|+.++|.+.|....+.
T Consensus 767 ~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQL 783 (799)
T ss_pred ccchHHHHHHHHHHHhh
Confidence 99999999999988753
No 92
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.6e-06 Score=74.34 Aligned_cols=349 Identities=11% Similarity=0.066 Sum_probs=218.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (480)
++-+...+++..|+.+++.-...+.-....... +...+.+.|++++|...+..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 667778899999999998876554423323444 4455678999999999999888755 67777777787777888999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 011643 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.+|..+-....+ ++-.-..|.....+.++-++...+-+.+.+. ..--.++.......-.+.+|++++.++.
T Consensus 108 ~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988876643 4555556666667778877777766666542 2333445555555668999999999998
Q ss_pred hCCCCcCHHHHHH-HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHhHH--HHH----------
Q 011643 263 STVCRPTSFIYSV-LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK--ANKFKNV--YRV---------- 327 (480)
Q Consensus 263 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a--~~~---------- 327 (480)
.. .|+-...+. +.-+|.+..-++-+.++++-.... ++.++...|.......+ .|+..+. ..+
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 75 344444443 445677888888888888877654 33345555554444333 2322111 111
Q ss_pred HHHHHhCC------------CCC-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHH-------------
Q 011643 328 LKDMNSKG------------VAP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY------------- 377 (480)
Q Consensus 328 ~~~~~~~~------------~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 377 (480)
.+.+.+.+ +-| -+..-..++-.|.+.++..+|..+.+... |.++.-|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhh
Confidence 11111111 001 11122334555788899999988876553 2222222
Q ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 011643 378 ------------------------------TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 378 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
.++..++.-..++++....++.+...-.. |...-..+..+++..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHH
Confidence 12223333333444444444444433222 22223346788888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 011643 428 SCVLLEDMIEKGIRPSGETF-GKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 428 a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
|.++|-......++ |..+| ..|.++|.+.++.+-|..++-++
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999877655555 44454 46678889999999998877554
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=9.3e-06 Score=69.55 Aligned_cols=303 Identities=10% Similarity=0.021 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF-NGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~ 174 (480)
++.-..-+...+...|++..|+.-|....+.++.+-.++..-...|...|+...|+.=+++..+. .||...- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 34444556677788888999999998888877666666666677888888888888888888774 5664332 12234
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCC---hhh------------HHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011643 175 ALCKSKNVRKAQEIFDCMKDRFIPD---SKT------------YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 239 (480)
.+.+.|.+++|..-|+.+....+.+ ... ....+..+...|+...|+.....+++. .+.|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 5678899999999888887643311 111 122344556678888999988888875 345777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH----HHH---H
Q 011643 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY----NAL---I 312 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l---i 312 (480)
.-..+|...|++..|+.=+...-+.. ..+..++--+-..+...|+.+.++...++..+. .||.... ..+ .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 88888999999998887777665543 334555556677788889999888888888775 4453321 111 1
Q ss_pred ------HHHHHcCCHhHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011643 313 ------GAFCKANKFKNVYRVLKDMNSKGVAPNSR---TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 313 ------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
......++|.++.+-.+...+..+..... .+..+-.++...+++.+|++...++....+.|+.++..-..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 12334567777777777777654332222 344556677778899999999999888777889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 011643 384 FCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~ 404 (480)
|.-...++.|+.-|+.+.+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999888765
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=1.4e-07 Score=88.21 Aligned_cols=218 Identities=10% Similarity=0.072 Sum_probs=168.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011643 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+.+.|-...|..+++++.. |...+.+|...|+..+|..+..+..++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 4567778888999999999987653 566788899999999999888887774 67888888888877766
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
.-+++|.++.+....+ .-..+.......++++++.+.|+.-.+..+....+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6788888887765443 111111222346888888888888888777788888888888888899999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.-....+. +...||.+-.+|.+.|+-.+|...++++.+.+ .-+..+|...+-...+.|.+++|.+.+.++..+.+.
T Consensus 544 rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 544 RCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 87775422 56789999999999999999999999988776 445667777777788889999999988888776553
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=6.5e-06 Score=86.25 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=212.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCH--HHHHHHHHHHH
Q 011643 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV------TQNL--AAFNGLLSALC 177 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll~~~~ 177 (480)
+...|+++.+..+++.+..... .++.........+...|+++++..++......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3455777777777666532211 2233334445556788999999999987754210 1111 22223334566
Q ss_pred ccCChhhHHHHHHHhhcCCCC-C----hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHh
Q 011643 178 KSKNVRKAQEIFDCMKDRFIP-D----SKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-----PDIVTYGIMVDVLCK 247 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~ 247 (480)
..|++++|...+++.....+. + ....+.+...+...|++++|...+.+.....-. ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987652221 1 134456667778899999999999888643111 112344556677888
Q ss_pred cCCHHHHHHHHHHhHh----CCCC--c-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 011643 248 AGRVDEALGIVKSMDS----TVCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILA--DVAMYNALIGAFC 316 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~ 316 (480)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 23344556667778899999999988875421 111 2334444566778
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHHhCCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh
Q 011643 317 KANKFKNVYRVLKDMNSKGVAP-NSRTC-----NIILNGLIGRGETDEAYRVFRRMIKLCEADA----DTYTMMIKMFCQ 386 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 386 (480)
..|+.+.|...+.......... ....+ ...+..+...|+.+.|..++........... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421110 11111 1122444568899999999877654211111 124567788889
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011643 387 GGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
.|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987653 32221 2456667778899999999999999998653
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.8e-07 Score=85.30 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=187.6
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHH
Q 011643 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
.-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999999988877533 67788888888888888888998888888875 556777888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHcCCHhHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhCCC
Q 011643 288 DAVDTFLEMEKNGILADVAMYNALI-----------GAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
.|+..++..+...++ |..+. ..+..........++|-++. ..+..+|+.....|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999888654211 00000 01111122344455555554 44445778888888888889999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHH
Q 011643 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
+++|.+.|+.++...|.|..+||.|.-.++...+.++|+..|+++++.. |+ +.+...|.-+|...|.+++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999888899999999999999999999999999999864 54 45667788889999999999999887
Q ss_pred HHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011643 435 MIEK---------GIRPSGETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 435 ~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
++.. +..++...|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7642 1223446777777777777776644443
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=3.4e-05 Score=70.27 Aligned_cols=407 Identities=11% Similarity=0.122 Sum_probs=206.5
Q ss_pred CCCHHHHHHHHHHHhhCch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011643 60 RVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
+-|-+....+++.+...+- +.+++++.+... ++.++..|..-|....+.++++..+.+|.++...- .+.+.|..-+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHH
Confidence 3455566667776665543 677777776544 44677788888888888888888888888776542 4566666655
Q ss_pred HHHHHc-CCHHH----HHHHHHHH-HhcCCCC-CHHHHHHHHHHH---------HccCChhhHHHHHHHhhcCCCCCh-h
Q 011643 139 RKYARV-QKVEE----AVYTFNVM-QKYGVTQ-NLAAFNGLLSAL---------CKSKNVRKAQEIFDCMKDRFIPDS-K 201 (480)
Q Consensus 139 ~~~~~~-~~~~~----a~~~~~~~-~~~~~~~-~~~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~-~ 201 (480)
..--+. |+... ..+.|+-. .+.|..+ +-..|+..+..+ ....+++...++++++...--.+. .
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 544332 22222 22333333 3334333 234455555433 223345566677777664211111 1
Q ss_pred hHH------HHHHHH-------hcCCChhHHHHHHHHHH--HcCCCCChhh---------------HHHHHHHHHhcC--
Q 011643 202 TYS------ILLEGW-------GKDPNLPRAREIFREMV--DTGCNPDIVT---------------YGIMVDVLCKAG-- 249 (480)
Q Consensus 202 ~~~------~l~~~~-------~~~~~~~~a~~~~~~m~--~~~~~~~~~~---------------~~~l~~~~~~~g-- 249 (480)
.|+ .=|+.. -+...+..|.++++++. -.|......+ |..+|.-=...+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 222 111111 12334556666666654 2232211111 322332111111
Q ss_pred ----CH--HHHHHHHHHh-HhCCCCcCHHHH-----HHHHHHhhccCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 011643 250 ----RV--DEALGIVKSM-DSTVCRPTSFIY-----SVLVHTYGVENR-------IEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 250 ----~~--~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
.. ....-.+++. .-.+..|+.... ....+.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111111 112223332111 011122222232 4556666666554322223444444
Q ss_pred HHHHHHHc---CCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cC-CCCHHHHHHHHHHH
Q 011643 311 LIGAFCKA---NKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC-EADADTYTMMIKMF 384 (480)
Q Consensus 311 li~~~~~~---~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~ 384 (480)
+..---.. +..+.....++++...- ..| ..+|...++...+...+..|..+|.++.+ .. ..++.++++++..|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33211111 12455556666655432 233 33566677777777777777777777776 22 23566666777666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011643 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDV 462 (480)
Q Consensus 385 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 462 (480)
|. ++..-|.++|+--.++- .-+..--...+.-+...++-..|..+|++.+..++.|+. .+|..++..-..-|+...
T Consensus 413 cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred hc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 54 56677777777544331 123333445566666777777777777777766554443 567777777777777777
Q ss_pred HHHHHHHHHh
Q 011643 463 LKFLQEKMNL 472 (480)
Q Consensus 463 a~~~~~~~~~ 472 (480)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 98
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.9e-06 Score=76.63 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=113.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh--h
Q 011643 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV--R 183 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~ 183 (480)
+...++.++|+.+.+++...++.+..+|+.....+...| ++++++..++.+.+.+ +.+..+|+.-..++.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 344455666666666666666655555555555555555 4566666666666554 34444555444344444442 4
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CC----HHHHHH
Q 011643 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA---GR----VDEALG 256 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~ 256 (480)
++..+++.+.+..+.|..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |. .++.+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 5566666666555556666666666666666666777777766665433 445555544443333 11 234555
Q ss_pred HHHHhHhCCCCcCHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011643 257 IVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
....+.... +-+...|+.+...+... +...+|.+.+.+..+.++ .+......|++.|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 554444433 44555566555555542 333456666666554332 255556666666654
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2e-05 Score=76.90 Aligned_cols=220 Identities=18% Similarity=0.185 Sum_probs=99.8
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHh
Q 011643 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (480)
.+|..+..+-.+.|...+|.+-|-+.. |...|..+++...+.|.+++-.+++...++....|.. =+.++.+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 344445554444444444444332221 3344445555555555555555544444443322222 23344445
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHH
Q 011643 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
++.++..+..+.+ .-|+......+.+-|...|.++.|.-+|... .-|..+...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 5444444333222 1134444444444444445554444444322 23444444455555555554
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 011643 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 440 (480)
+.-+++ .+..+|..+-.+|...+.+.-| +|....+.....-...++.-|-..|-+++.+.+++..+ |+
T Consensus 1241 D~aRKA-----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GL 1308 (1666)
T KOG0985|consen 1241 DAARKA-----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GL 1308 (1666)
T ss_pred HHhhhc-----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--ch
Confidence 444332 2344555555555544444322 22222222334445566666666676776666666554 22
Q ss_pred C-CCHHHHHHHHHHHHh
Q 011643 441 R-PSGETFGKLRKLLIK 456 (480)
Q Consensus 441 ~-p~~~~~~~l~~~~~~ 456 (480)
+ .....|+.|.-.|.+
T Consensus 1309 ERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1309 ERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 2 223345555555544
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=2.2e-05 Score=67.30 Aligned_cols=303 Identities=9% Similarity=0.060 Sum_probs=216.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHHH
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLE 208 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 208 (480)
+..-..-+...+...|++..|+.-|...++.+ +.+-.++---...|...|....|+.-+.+..+. +||- ..--.-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhch
Confidence 34445567778888999999999999988743 222222333345677888888888888877663 3443 22233455
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCCCC--hhhH------------HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHH
Q 011643 209 GWGKDPNLPRAREIFREMVDTGCNPD--IVTY------------GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (480)
.+.+.|.++.|..-|+..++....-. ...+ ...+..+...|+...|+.....+.... +.+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 78899999999999999987643211 1111 223445667899999999999998875 77888999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh----HHHH----
Q 011643 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT----CNII---- 346 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l---- 346 (480)
.-..+|...|++..|+.=++...+..- .+..++.-+-..+...|+.+.++...++..+. .||... |..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 999999999999999988888776543 36666777778889999999999999988875 454432 2211
Q ss_pred -----HHHHHhCCChhHHHHHHHHHHhcCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011643 347 -----LNGLIGRGETDEAYRVFRRMIKLCEA-D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417 (480)
Q Consensus 347 -----~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 417 (480)
+......+++.++++-.+...+..|. . ...+..+-.++...|++.+|++...++.+... .|+.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHH
Confidence 12234567777777777776663222 2 23345566777788999999999999887642 24788888888
Q ss_pred HHHhCCChHHHHHHHHHHHHcC
Q 011643 418 GLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
+|.-...+++|+.-|+.+.+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 9998899999999999988754
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.1e-05 Score=69.93 Aligned_cols=352 Identities=11% Similarity=0.087 Sum_probs=203.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChh
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVR 183 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~ 183 (480)
+.-+.+..++|+..++... ..+..+...-...+.+.|++++|.++|+.+.+.+. ++.. .-..++.+-. .-
T Consensus 88 c~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----AL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hh
Confidence 3457899999999998332 24566777788889999999999999999988763 3322 1222222111 11
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcC-------------CCCChh-hHHHHHHHHHhcC
Q 011643 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-------------CNPDIV-TYGIMVDVLCKAG 249 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------------~~~~~~-~~~~l~~~~~~~g 249 (480)
.+ ++.+........+...+....-.+...|++.+|+++++...+.+ ++-... .-..+...+...|
T Consensus 160 ~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 11 12333333211122333334556677899999999998883221 000111 1123455677789
Q ss_pred CHHHHHHHHHHhHhCCCCcCHHH----HHHHHHHhhccCCHH-HHHHHHH------------HH----------------
Q 011643 250 RVDEALGIVKSMDSTVCRPTSFI----YSVLVHTYGVENRIE-DAVDTFL------------EM---------------- 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~a~~~~~------------~~---------------- 296 (480)
+.++|..++....+.. ++|... -|.++.+-....-++ .++..++ .+
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 333322 122221111110000 0000000 00
Q ss_pred -------------HHC-CCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHH
Q 011643 297 -------------EKN-GILADVAMYNALIGAFCK--ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 297 -------------~~~-~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
... +..| ...+..++....+ ......+..++...-+....-...+....+......|+++.|.
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 000 1111 2333444433322 2245666677766665533333455666677788899999999
Q ss_pred HHHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHhCCChHH
Q 011643 361 RVFRRMIK-------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK--RFIPSM----HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 361 ~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~ 427 (480)
+++..... .....+.+...+...+.+.++-+.|..++.+.+.- .-.+.. .++..++..-.+.|+.++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99883221 23345566777788888888888888887776531 001121 233334444556799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 428 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+++
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999854 57888888999888875 467776666554
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=5.3e-07 Score=82.31 Aligned_cols=248 Identities=11% Similarity=0.074 Sum_probs=117.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHH
Q 011643 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+.+..+-.+.|....-.|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34445555555555554443 33445555555555555555555555555554444455555555555555555555555
Q ss_pred HHHHHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHh-HhCCCCcCHHHHHHHHHHhhccCCHHHHHHH
Q 011643 222 IFREMVDTGCN--------PDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 222 ~~~~m~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.++..+...++ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 55554332110 00000000 1111122223333333333 2233234555555555555566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHh---
Q 011643 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIK--- 368 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 368 (480)
|+..+.... -|...||.|...++...+.++|..-|++.++. +|+ +.....|.-.|...|.+++|.+.|-.++.
T Consensus 453 f~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 666554422 24555666666666666666666666666653 333 22333344455666666666655554443
Q ss_pred c-------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011643 369 L-------CEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 369 ~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (480)
. ..++..+|..|=.++...++.+-+..
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 0 11223455555555555555554433
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=2.6e-07 Score=86.54 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=186.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHh
Q 011643 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (480)
..-..+...+...|-..+|..+++++. .|..++.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344567778888999999999998875 3566788999999999999998888773 88999999999998
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHH
Q 011643 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
....-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+...- -..+|-....+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 8888889999998876543 1112222334478999999999988775332 4568888888889999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-
Q 011643 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG- 439 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 439 (480)
+.|.......|.+...|+.+..+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|++.+.++.+..
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999889999999999999999999999999999999887 3477788888888999999999999999987431
Q ss_pred CCCCHHHHHHHHHHH
Q 011643 440 IRPSGETFGKLRKLL 454 (480)
Q Consensus 440 ~~p~~~~~~~l~~~~ 454 (480)
..-|..+...++...
T Consensus 619 ~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTV 633 (777)
T ss_pred hcccchhhHHHHHHH
Confidence 112444444444433
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=1.9e-06 Score=86.45 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC-CCc---CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011643 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
...|...|......++.++|.++.++....- +.. -...|.++++.-..-|.-+...++|+++.+.. .....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3445555555555555555555555554321 111 12234444444444455555556666655531 12344555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcC
Q 011643 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGG 388 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 388 (480)
|...|.+.+.+++|-++++.|.++ +.-....|...+..+.++++-+.|..++.++.+..|. ......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 566666666666666666666654 2234455666666666666666666666666653333 3344444555555666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 011643 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~ 465 (480)
+.+.+..+|+......++ ....|+.++..-.++|+.+.+..+|+++...++.|-. ..|...+..-...|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 666666666666554322 4456666666666666666666666666665554432 234455554444555443333
No 105
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=4.7e-06 Score=74.18 Aligned_cols=204 Identities=7% Similarity=0.015 Sum_probs=87.3
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV--DEAL 255 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~ 255 (480)
.+..++|+.+.+++....+.+..+|+.-..++...| ++++++..++++.+.+.+ +..+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 344444444444444433334444444433443333 344555555555443322 223333333233333331 3445
Q ss_pred HHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HhHHHHHH
Q 011643 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA---NK----FKNVYRVL 328 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~ 328 (480)
.+++.+.+.. +-+..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |. .++.....
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 5554544443 334445555555555555555555555555554332 334444433333222 11 12334444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhC----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011643 329 KDMNSKGVAPNSRTCNIILNGLIGR----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.+++...+. +...|+.+...+... +...+|.+.+.+.....+.+......|+..|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 444443222 344454444444442 222345555544444334444555555555543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.1e-05 Score=78.50 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
.|...+...++.. .-+..+|+.|.- ....|.+.-|...|-......+.+..+|..+.-.+....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 3444444444321 113333443332 24445555555555544444555556666666666666677777777776666
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH--H--HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM--I--EKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
..+. |...|..........|+.-++..+|..- . ..|--|+..-|.........+|+.++-....+
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 5422 4444444333334455555555555541 1 12223333333333333444555444433333
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=3.6e-06 Score=84.52 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=192.9
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011643 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNP---DIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
.+=|+++....|.+...|-..|......+++++|.++.++.+.. ++.- -...|.++++.-..-|.-+...++|+++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555555667788999999999999999999999998753 1111 1345777777777778888999999999
Q ss_pred HhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCh
Q 011643 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNS 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~ 340 (480)
.+. ...-..|..|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+.++.++|..++.+..+.-+. -..
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 875 334556889999999999999999999999876 3346788999999999999999999999998875221 134
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLING 418 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~ 418 (480)
......+..-.+.|+.+.+..+|+......|.-...|+.++++-.+.|+.+.+..+|++++..++.|-. ..|.-.+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 455666777789999999999999999988888899999999999999999999999999998877543 345555554
Q ss_pred HHhCCChHHHHHHHHHHH
Q 011643 419 LCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~ 436 (480)
--..|+-+.+..+=.++.
T Consensus 1681 Ek~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHhcCchhhHHHHHHHHH
Confidence 445566555544444443
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=4.1e-05 Score=73.21 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
+-.+|..+...|.+.++++-|.-.+-.|.... . .+.++=..........|.+++|..+|.+.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 45688889999988888888877776664321 1 11122233444456778888888888887653
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHH----------HcCC-----
Q 011643 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV----------DTGC----- 231 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----------~~~~----- 231 (480)
..|=..|-..|.+++|.++-+.-.. ..-..||......+-..++++.|++.|++.. ...+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3344566778888888887764332 1123466666777777788888888876632 1110
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 011643 232 ----NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307 (480)
Q Consensus 232 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (480)
..|...|.-...-+-..|+.+.|+.+|..... |-.+++..|-.|+.++|-++-++-- |...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHH
Confidence 11233333334444456677777777665543 4455566666666666666554422 4555
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011643 308 YNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
...+.+.|-+.|++.+|..+|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667777878888888877776654
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00011 Score=71.93 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011643 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 244 (480)
.+.+|..+..+-...|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+.+...++..-+|... ..++-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34667778888888888888877775543 77788888888888899988888887777766666554 467778
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011643 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
|++.++..+.++++. -|+......+.+-|...|.++.|.-+|... ..|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 888888877666553 577777777888888888888887776544 3467777778888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
.+.-++.- +..||..+-.+|...+.+.-|. |.. .......-...++..|-..|-+++...+++.....
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 76655432 5678888888888777665442 222 23345556777888888888888888888775532
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
. .....+|+.+.-.|.+- ++++..+.++-.-.+ ...-.+++++..+.-|.+..-++.+-.+.
T Consensus 1309 E-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1309 E-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred h-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12345667676666653 355555555444321 11236778888877788877777665543
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=7.3e-06 Score=78.08 Aligned_cols=330 Identities=12% Similarity=0.119 Sum_probs=204.2
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--------CC
Q 011643 95 HSVRAYHSMIE--SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G--------VT 163 (480)
Q Consensus 95 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 163 (480)
-|..+-.++++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+-.|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 36677777765 4567799999988887765 4578999999999998888776665554321 0 11
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011643 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243 (480)
Q Consensus 164 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 243 (480)
++ ..-....-.....|.+++|+.+|.+-+. |..|=..|-..|.+++|.++-+.-..-. =..||.....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 21 1111122234567899999999998775 5556667777899999998866533221 2245666666
Q ss_pred HHHhcCCHHHHHHHHHHhHhC----------C---------CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC
Q 011643 244 VLCKAGRVDEALGIVKSMDST----------V---------CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (480)
.+-..++.+.|++.|++.... . -..+...|......+...|+++.|+.+|.....
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 666778888888888754211 0 122444555566666677777777777776653
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011643 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
|-.+++..|-.|+.++|-++-++-- |....-.+.+.|-..|++.+|..+|.++.. +...|+.|
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------fsnAIRlc 1003 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA--------FSNAIRLC 1003 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 4456666666778887777665432 445666678888888999999888877653 22222222
Q ss_pred Hhc-------------C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH--------HHH--HcC
Q 011643 385 CQG-------------G--ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE--------DMI--EKG 439 (480)
Q Consensus 385 ~~~-------------g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~--~~~ 439 (480)
-.. | +.-.|.++|++ .|. -+...+..|-+.|.+.+|+++-= +++ +..
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 221 1 22223333332 121 12233445666777766665421 112 223
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 440 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
...|+..++.-.+.+....+++.|..++-...+
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344677777777777778888888777655544
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=9e-06 Score=67.23 Aligned_cols=249 Identities=14% Similarity=0.133 Sum_probs=122.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhH
Q 011643 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
+-+.-.|++..++..-+..... +.++..-..+-++|...|.+... ..+++.+..|.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhHH
Confidence 3344455666655554443332 12333333344555555554322 222333323334444444444444444443
Q ss_pred HHHHH-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011643 219 AREIF-REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 219 a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
-+.-+ +.+......-+......-...|+..|++++|++...... +......=+.++.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 333332222222223333445667777777776666422 11222222344455566666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 011643 298 KNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 298 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+- .+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++........+
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 53 245555555555544 23466666666666654 45566666666666666666666666666666655555
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 011643 374 ADTYTMMIKMFCQGGELEK-AFKVWKYMKL 402 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 402 (480)
+.+...++-+-...|...+ ..+.+.+++.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5555555544444444322 3334444443
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=4.7e-06 Score=82.72 Aligned_cols=238 Identities=10% Similarity=0.069 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.+...+..|+..+...+++++|.++.+...+.. |.....|-.+...+...++...+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 677888899999999999999999998776653 33334444444466666665555443 3334
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH
Q 011643 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-+..+.+.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 4444455544555555555532 244577788889999999999999999998887 66788889999999888 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011643 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|.+++.+.... |...+++..+..+|.++....+. +...+..+ .+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHh
Confidence 99888887753 56667888888888888875322 22222222 222222
Q ss_pred --cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011643 369 --LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+...-..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12233445666677778888888888888888887644 6666677777665
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=1.2e-06 Score=75.69 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---
Q 011643 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--- 167 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 167 (480)
+..+..+......+.+.|++++|...|+++....+.++ .++..+...+...|++++|+..++.+.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 35677778888888899999999999998887766333 567778888889999999999999887754 22222
Q ss_pred HHHHHHHHHHcc--------CChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011643 168 AFNGLLSALCKS--------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 168 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 239 (480)
++..+..++... |+.++|.+.|+.+....+.+...+..+..... . ..... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~--------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH--------HHHH
Confidence 344444455443 66778888888877654444444332221110 0 00000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC--CcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011643 240 IMVDVLCKAGRVDEALGIVKSMDSTVC--RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
.+...+.+.|++.+|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888999999999998876521 223567888889999999999999988888765
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=4.7e-06 Score=68.86 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011643 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 180 (480)
..+-..+.-.|+-+....+........+.+.......+....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344444555555555555555444444455555555566666666666666666655543 555666666666666666
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
+++.|..-|.+..+-.+-++...+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666666555544445555555555555566666666666555544322 344444455555555666666555443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=3.8e-06 Score=69.55 Aligned_cols=154 Identities=12% Similarity=0.174 Sum_probs=112.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011643 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 45677888888765444322211 0 0122356677777777777776433 677888888888899999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 357 DEAYRVFRRMIKLCEADADTYTMMIKMF-CQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
++|...+++..+..+.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988887788888888888864 66676 48899999988887644 67788888888888899999999999
Q ss_pred HHHHcCCCCCHH
Q 011643 434 DMIEKGIRPSGE 445 (480)
Q Consensus 434 ~~~~~~~~p~~~ 445 (480)
++++.. .|+..
T Consensus 169 ~aL~l~-~~~~~ 179 (198)
T PRK10370 169 KVLDLN-SPRVN 179 (198)
T ss_pred HHHhhC-CCCcc
Confidence 988753 34443
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=8e-06 Score=76.88 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011643 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 319 (480)
..+.+......|.+|+.+++.+.... .-...|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 34556667778888888888877653 344557777888888888888888876532 2455677888888
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
+|+.|.++-.+... .......|-.-..-+-.+|++.+|++++-.+. .|+. .|.+|-+.|..+..+++..+
T Consensus 806 kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred cHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 88888887766543 34445556655666677777777777764433 2332 35666677777766666554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
-... .-..|...+..-+-..|+..+|...|-++
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3211 11234445555566666666666655443
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=1.5e-05 Score=77.73 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011643 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
...|...|-+..+.++.-...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 5555555555555555445566677777766667777777777766654 445566666667777777777776664333
Q ss_pred hcCCCCChh--hHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCH
Q 011643 193 KDRFIPDSK--TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270 (480)
Q Consensus 193 ~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (480)
.+..+.-.. -|....-.|.+.++...|..-|+......+. |...|..++.+|...|++..|.++|.+.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 322111111 1222334455566666666666666654332 5666666667777777777777776665543 2221
Q ss_pred HHHHH--HHHHhhccCCHHHHHHHHHHHH
Q 011643 271 FIYSV--LVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 271 ~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
+|.. ....-+..|.+.+|+..+....
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1211 2223345566666666665543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=3.1e-06 Score=69.92 Aligned_cols=170 Identities=9% Similarity=0.055 Sum_probs=126.1
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH
Q 011643 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204 (480)
Q Consensus 125 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 204 (480)
...+-+... ..+-..+...|+-+....+....... .+.|....+.++....+.|++..|...+.+.....++|..+|+
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 333434444 55666677777777777777665432 2456667777888888888888888888888887788888888
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011643 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.+.-+|.+.|++++|..-|.+..+.... +....+.+.-.+.-.|+++.|..++......+ .-+..+-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 8888888888888888888888875332 45566777777788888888888888887764 446667777788888888
Q ss_pred CHHHHHHHHHHHHH
Q 011643 285 RIEDAVDTFLEMEK 298 (480)
Q Consensus 285 ~~~~a~~~~~~~~~ 298 (480)
+++.|.++...-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 88888877765443
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.0003 Score=68.29 Aligned_cols=212 Identities=10% Similarity=0.042 Sum_probs=106.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011643 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML 129 (480)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 129 (480)
+...+++.+..+....+..+...-...+++|..+++.....++ .|..+...+-..|.+.++.++|..+|++.....|.
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 4444555555555444444433333344466666665544333 36666666666666777777777777666655443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hhhHHHHHHHhhcCC-C-
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN----------VRKAQEIFDCMKDRF-I- 197 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~-~- 197 (480)
.+-...+..+|++.+++.+-.+.--++-+ ..+..+..+-++++.+...-. ..-|.+.++.+.+.. +
T Consensus 110 -eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~ 187 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI 187 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc
Confidence 55566666666666665544433333332 234444555455554433211 222444444444311 1
Q ss_pred CChhhHHHHHHHHhcCCChhHHHHHHH-HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 011643 198 PDSKTYSILLEGWGKDPNLPRAREIFR-EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.+..-.......+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 111111222233344566677776663 33332222333344455566666677777777766666654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=3e-06 Score=73.19 Aligned_cols=185 Identities=14% Similarity=0.024 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh---h
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK---T 202 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 202 (480)
.....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+..+.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 567788888899999999999999999988754 2232 46677888899999999999999999875444443 4
Q ss_pred HHHHHHHHhcC--------CChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHH
Q 011643 203 YSILLEGWGKD--------PNLPRAREIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 203 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
+..+..++... |+.++|.+.++++.+.. |+. ..+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 55555556544 67888999999888653 332 22222211100 0000 0 0112
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011643 274 SVLVHTYGVENRIEDAVDTFLEMEKNGI--LADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
..+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566778999999999999999987632 223568889999999999999999999988765
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=9.4e-06 Score=80.68 Aligned_cols=241 Identities=7% Similarity=0.067 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011643 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+.+...+..++..+...+++++|.++.+......+.....|..+...+.+.++.+++..+ . ++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 347889999999999999999999999988888876666666666688888886666555 2 23
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011643 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.......++.-...+...+.. ...+...+..+..+|-+.|+.++|..+|+++++.. +-|..+.|.+...|... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333333334333333333333 23355578888999999999999999999999876 33788888888888888 9999
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
|.+++.+.... +...+++.++.++|.++....+. +...+..+.+.....-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 99888877643 55566788888888888775322 3223222222221110
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011643 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
|..--..++-.+-..|...++++++..+++.+.+..+.|.....-++.+|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111123345555566677777777777777777766666666766776665
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=3.3e-08 Score=55.01 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
|+.||..+|+.+|.+||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=2.4e-06 Score=66.85 Aligned_cols=107 Identities=7% Similarity=-0.080 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+......+...|++++|...|+......+.+...|..+...+...|++++|+..|+...+.+ +.+...+..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344556667777778888888777777777777777777777777777777777777777754 5566777777777777
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
.|++++|...|+......+.+...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7777777777777766545555555433
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=4.2e-08 Score=54.59 Aligned_cols=32 Identities=56% Similarity=1.111 Sum_probs=18.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011643 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=1.5e-05 Score=78.48 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=121.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHH
Q 011643 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 301 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
...+...+..|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|+...++.....+.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 4456888888889999999999999999999886 444 4566778888899999999999999999988889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+++.+.- .|-..-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999999999999988442 257888889999999999999999999998642 33444444443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.9e-06 Score=71.42 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=62.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCC--hhhHH
Q 011643 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-CKSKN--VRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~ 186 (480)
.++.+++...++.....++.+...|..+...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344455555555555555555555555555555555555555555555543 33444454444432 34444 35555
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
+++++..+..+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544445555555555555555555555555555543
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.6e-05 Score=64.62 Aligned_cols=249 Identities=11% Similarity=0.054 Sum_probs=159.5
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011643 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
+-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... +... |-.|.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 3344457777766665554432 1344444456666766666544332 2221 113344444444444444454444
Q ss_pred HHH-HHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011643 254 ALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 254 a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
-.. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 44444444334444444555667889999999998887722 23333333456778888999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011643 333 SKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 408 (480)
+- -+..|.+.|..++.+ .+....|.-+|+++....+|++.+.+....++...|++++|..++++...+... +
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 74 355677777777654 466888999999999888999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHhCCChHH-HHHHHHHHHH
Q 011643 409 MHTFSVLINGLCDKGIVSD-SCVLLEDMIE 437 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 437 (480)
+.+...++-.-...|...+ ..+.+.++..
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6777666666666665544 4456666654
No 128
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=0.00019 Score=67.95 Aligned_cols=110 Identities=19% Similarity=0.317 Sum_probs=53.5
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+.+.....++.+|+.+++.+... ..-...|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34444555566666666555432 1122335555556666666666665554321 2333455566666666
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHH
Q 011643 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
.|.++-++... .......|.+-..-+-+.|++.+|.++|-
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 66555544432 12233334444444445555555554443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=6.1e-06 Score=64.58 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+......+...|++++|...|+.+....+.+...|..+..++.+.|++++|...|+.+...+. .+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 334455566667777777777776666666666777777777777777777777777766543 2556666666667777
Q ss_pred CChHHHHHHHHHHHHc
Q 011643 423 GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 423 g~~~~a~~~~~~~~~~ 438 (480)
|+.++|+..|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=8e-06 Score=80.30 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011643 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (480)
+..++..+-.+.....+.|++++|..+++.+.+..|.+...+..+...+.+.+++++|+..+++..... +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 445677777777777777777777777777777777677777777777777777777777777777654 4455666666
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
..++...|++++|..+|+++....+.+..++..+..++...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777777777777644445667777777777777777777777777653
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=9.7e-05 Score=66.76 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=112.3
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCh
Q 011643 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGET 356 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 356 (480)
..+...|++++|+..++.+.+. .+.|+..+......+.+.++..+|.+.++.+... .|+ ....-.+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3445678888899988888775 2335556666677888899999999999988886 444 45566677888889999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
.+|..+++......+.|+..|..|.++|...|+..++..-.. .++...|++++|+..+....
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 999999988888888888999999999998888776655433 34566788888888888887
Q ss_pred HcCCCCCHHHHH
Q 011643 437 EKGIRPSGETFG 448 (480)
Q Consensus 437 ~~~~~p~~~~~~ 448 (480)
+. ++++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 64 344544443
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.53 E-value=0.00076 Score=61.85 Aligned_cols=374 Identities=9% Similarity=0.080 Sum_probs=231.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
-|..+|+.+|+-+... .++++.+.++++...-+.++..|..-|..-.+.++++..+.+|.+....- .+...|...++
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 5999999999987666 99999999999998888889999999999999999999999999887753 45667776665
Q ss_pred HHHc-cCChhh----HHHHHHHhhc--CC-CCChhhHHHHHHHH---------hcCCChhHHHHHHHHHHHcCCCC----
Q 011643 175 ALCK-SKNVRK----AQEIFDCMKD--RF-IPDSKTYSILLEGW---------GKDPNLPRAREIFREMVDTGCNP---- 233 (480)
Q Consensus 175 ~~~~-~g~~~~----a~~~~~~~~~--~~-~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~m~~~~~~~---- 233 (480)
--.+ .|+... ..+.|+-... +. ..+...|+..+..+ ..+.+++...++|+++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4332 333333 3344444444 22 23345577766654 23445677788888887531110
Q ss_pred --ChhhHHHHHHHH-------HhcCCHHHHHHHHHHhHh--CCCCcCHH---------------HHHHHHHHhhccC---
Q 011643 234 --DIVTYGIMVDVL-------CKAGRVDEALGIVKSMDS--TVCRPTSF---------------IYSVLVHTYGVEN--- 284 (480)
Q Consensus 234 --~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g--- 284 (480)
|-..|..-++.. -+...+..|.++++++.. .|...... .|..+|..=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111222112111 123456677777777643 22211111 1333333211111
Q ss_pred ---CH--HHHHHHHHH-HHHCCCCCCHHHHHH-----HHHHHHHcCC-------HhHHHHHHHHHHhCCCCCChhhHHHH
Q 011643 285 ---RI--EDAVDTFLE-MEKNGILADVAMYNA-----LIGAFCKANK-------FKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 285 ---~~--~~a~~~~~~-~~~~~~~~~~~~~~~-----li~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
.. ....-++++ +.-.+..|+.....+ .-+.+...|+ .+++..+++...+.-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112223333 222334443322111 1122333333 56788888877664333344555555
Q ss_pred HHHHHhCC---ChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 011643 347 LNGLIGRG---ETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCD 421 (480)
Q Consensus 347 ~~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 421 (480)
...--..- ..+.....++++.. ....-..+|..++....+...++.|..+|.++.+.+..+ .+..+++++.-+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 44322222 35666677777776 333334578889999999999999999999999887666 67788888887776
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
++.+-|.++|+--+.. ...++.--...+..+.+-++-..++.+|++...-
T Consensus 415 -kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7789999999987753 3344555557778888888888888888887654
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=7.4e-05 Score=67.50 Aligned_cols=181 Identities=11% Similarity=0.122 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHhHhCC--CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011643 250 RVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
++.++....+.+...+ -.|+...+...+........-..+..++.+..+. .-...-|...+ .+...|..++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 3444444445553322 2344555555555443333333333333333321 11233344333 45678999999999
Q ss_pred HHHHHhCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011643 328 LKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 328 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 406 (480)
++.+... .| |...+......+...++.++|.+.++++....|......-.+.++|.+.|++.+|.++++........
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998876 34 55566667788999999999999999999877777888889999999999999999999998876543
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
|+..|..|..+|...|+..++.....++.
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 88999999999999999988887666654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=7.2e-06 Score=63.82 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
...+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|...+++.....+.+...+..+..++...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3334444444444444444444444332 233344444444444444444444444444333333444444444444444
Q ss_pred CChhHHHHHHHHHHH
Q 011643 214 PNLPRAREIFREMVD 228 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~ 228 (480)
|++++|.+.|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=1.3e-05 Score=62.46 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
.....+...+...|+.++|.+.++.+....+.+...+..+..++...|++++|..+++...+.+ +.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444555666667777777777777666556666777777777777777777777777766654 225566666666777
Q ss_pred hCCChHHHHHHHHHHHHc
Q 011643 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~ 438 (480)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777653
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00018 Score=59.31 Aligned_cols=163 Identities=11% Similarity=0.019 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
|..++-+....|+.+.|..+++.+...- |-+..+-..-.-.+-..|++++|.++++.+.+..|.|..++..-+-..-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 3344444455566666666666655442 333333222222344456666666666666665555666665555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc---CCHHHHH
Q 011643 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE---NRIEDAV 290 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~ 290 (480)
|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+.+.+.-. .+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6655666666665554 33466666666666666666666666666665442 33333344444433222 2445556
Q ss_pred HHHHHHHHC
Q 011643 291 DTFLEMEKN 299 (480)
Q Consensus 291 ~~~~~~~~~ 299 (480)
++|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 666665554
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00012 Score=60.41 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=131.5
Q ss_pred CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011643 95 HSVR-AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 95 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
++.. .|..++-+....|+.+.|...++.+..+-+.+..+-..-.-.+-..|++++|+++|+.+.+.+ |.|..++.--+
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKl 127 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKL 127 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHH
Confidence 4443 455666677788999999999999988876555554444445567899999999999999877 67778887777
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---C
Q 011643 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG---R 250 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~ 250 (480)
...-..|.--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-.. +.+...+..+...+.-.| +
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHH
Confidence 777788888899999999988889999999999999999999999999999998653 224444555555554444 5
Q ss_pred HHHHHHHHHHhHhCC
Q 011643 251 VDEALGIVKSMDSTV 265 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~ 265 (480)
..-+.++|.+..+..
T Consensus 207 ~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 207 LELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHhC
Confidence 667888888887754
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=4.2e-05 Score=69.63 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011643 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++....... +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555556667777777777776653 33 3334555666666666777777666654222 444455555556667
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
++.+.|+.+.+++.+..|.+..+|..|..+|.+.|+++.|...++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777766666666777777777777777777766665543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.8e-05 Score=69.90 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011643 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456667777899999999999999874 44 34557888888888999999999988653 3366666666777889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011643 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.++++.|..+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999986322 456999999999999999999998887653
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0053 Score=60.04 Aligned_cols=61 Identities=13% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHhCCChh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011643 346 ILNGLIGRGETD---EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 346 l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 406 (480)
++..+.+.++.. +|+-+++......+.|..+--.+++.|+-.|-+..|.+++..+.-+.+.
T Consensus 442 Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 442 LIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 334444444433 2333333333334444444455555555555555555555555444333
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=7e-05 Score=58.89 Aligned_cols=115 Identities=12% Similarity=0.187 Sum_probs=50.6
Q ss_pred cCChhhHHHHHHHhhcCCCCC---hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPD---SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD--IVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 253 (480)
.++...+...++.+....+.+ ....-.+...+...|++++|...|+........|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555554433322 12222333444455555555555555554431111 1122234444555555555
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011643 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
|+..++..... ......+.....++...|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443222 12233344444555555555555555543
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=0.00018 Score=56.51 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHH
Q 011643 353 RGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 427 (480)
.++...+...++.+.+..+.+ ....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666644444 223334556666667777777777776665422221 233345556666677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 428 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
|+..++..... ...+..+......+.+.|++++|...|++
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776553222 22334455556666777777777766654
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.2e-06 Score=47.32 Aligned_cols=33 Identities=39% Similarity=0.753 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC
Q 011643 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 234 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=7.1e-06 Score=46.35 Aligned_cols=33 Identities=42% Similarity=0.924 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 011643 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 443 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566667777777777777777777766666665
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.00019 Score=54.29 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 011643 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT--QNLAAFNGLLS 174 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~ 174 (480)
+......+.+.|++++|.+.|+.+....+. ....+..+...+.+.|+++.|...|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555555555555555555544331 1334444555555555555555555555443211 11233444444
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCC
Q 011643 175 ALCKSKNVRKAQEIFDCMKDRFIPD 199 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~ 199 (480)
++...|+.++|...++++....+.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 5555555555555555554433333
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=7.8e-06 Score=45.82 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCC
Q 011643 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 233 (480)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.02 E-value=9.8e-05 Score=67.59 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011643 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 413 (480)
..+......+++.+....+.+.+..++-+.... ...-+.|..++++.|...|..+++..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335556666666666666667777666666551 11223344577777777777777777777766777777777777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011643 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457 (480)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 457 (480)
.++..+.+.|++..|.++..+|...+...++.|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777655555666655545555443
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1.2e-05 Score=44.98 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 011643 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 442 (480)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00012 Score=64.41 Aligned_cols=130 Identities=11% Similarity=0.107 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011643 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR-VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
.+|..++....+.+..+.|..+|.+....+..+...|......-.. .++.+.|..+|+...+. ++.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3555666666666666666666666664444455555555444333 34455566666666554 345555666666666
Q ss_pred HccCChhhHHHHHHHhhcCCCCCh---hhHHHHHHHHhcCCChhHHHHHHHHHHH
Q 011643 177 CKSKNVRKAQEIFDCMKDRFIPDS---KTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 228 (480)
.+.++.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666655433222 3455555555555555555555555554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=0.00014 Score=52.21 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011643 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 180 (480)
..+...+...|++++|...++......+.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3344445555556666666655555444444455555555555555555555555555443 223344444555555555
Q ss_pred ChhhHHHHHHHhh
Q 011643 181 NVRKAQEIFDCMK 193 (480)
Q Consensus 181 ~~~~a~~~~~~~~ 193 (480)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0006 Score=60.40 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=59.6
Q ss_pred HHHhC-CChhHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHH
Q 011643 349 GLIGR-GETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMH-TFSVL 415 (480)
Q Consensus 349 ~~~~~-~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l 415 (480)
.|... |+++.|.+.|+++... .... ..++..+...+.+.|++++|.++|+++...... .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 6666666666666551 1111 234455666677777777777777766543211 1111 22223
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhc
Q 011643 416 INGLCDKGIVSDSCVLLEDMIEK--GIRPS--GETFGKLRKLLIKE--GREDVLKFLQEKMNLL 473 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~l 473 (480)
+-++...|+...|.+.+++.... ++..+ ......|+.++... ..++.+..-++.+.+|
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 33455567777777777776533 22222 33455556655442 2344444444444433
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00016 Score=51.88 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=32.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011643 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461 (480)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 461 (480)
..+...|++++|...++.+.+... .+...+..+...+...|++++|.+.++...... ..+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 333334444444444444333221 122333333333444444444444444443322 112223333334444444444
Q ss_pred HHHHHHHHH
Q 011643 462 VLKFLQEKM 470 (480)
Q Consensus 462 ~a~~~~~~~ 470 (480)
.|...+++.
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=0.00033 Score=64.08 Aligned_cols=88 Identities=10% Similarity=-0.049 Sum_probs=51.3
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011643 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
.+...|+++.|++.|+++++..+.+...|..+..+|...|++++|...+++++..... +...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 3445556666666666666555555556666666666666666666666666554422 445555555566666666666
Q ss_pred HHHHHHHHH
Q 011643 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
+..|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 666666654
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.97 E-value=0.00022 Score=65.38 Aligned_cols=122 Identities=9% Similarity=0.070 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011643 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 237 (480)
+.+.+......+++.+....+++.+..++-+.... ...-..|..++++.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666666676666666677777777666551 112234455777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc
Q 011643 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (480)
++.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 777777777777777777777777666555555555555554444
No 155
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.013 Score=52.38 Aligned_cols=159 Identities=12% Similarity=0.024 Sum_probs=103.1
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------H
Q 011643 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------N 309 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 309 (480)
.++...|++++|...-..+.+.+ ..+......-..++.-.++.+.+...|++.+..+ |+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 45566788888887777766543 2222222222233445677788888888776643 332211 1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011643 310 ALIGAFCKANKFKNVYRVLKDMNSKG---VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.=..-..+.|++..|.+.|.+.+... ..|+...|........+.|+.++|+.-.+...+..+.-...|..-..++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 11223467888999999999887752 344555666666777888999999988888876444444455555667777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 011643 387 GGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~ 404 (480)
.+++++|.+-++...+..
T Consensus 334 le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 889999999988877654
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00046 Score=52.11 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLIN 417 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~ 417 (480)
+..+...+.+.|++++|.+.+..+....+.+ ...+..+..++.+.|+++.|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344445555566666666665555432222 334445556666666666666666665543211 11334555555
Q ss_pred HHHhCCChHHHHHHHHHHHHc
Q 011643 418 GLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~ 438 (480)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666554
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00018 Score=60.99 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=67.9
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011643 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
-+.+.+++.+|...|.+.++..+. |.+.|..=..+|.+.|.++.|.+-.+..+...+....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 355667777777777777775333 5566666677777777777777777777766666667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 011643 394 FKVWKYMKLKRFIPSMHTFSV 414 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~ 414 (480)
.+.|++..+.. |+-.+|-.
T Consensus 169 ~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHhhhccC--CCcHHHHH
Confidence 77777776644 55555433
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00024 Score=62.60 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4677788888888889999999999986432 234445444444 33356777799999999988888888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011643 385 CQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 385 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
...++.+.|..+|++.... +.++ ...|..++..=.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 9999999999999998865 3222 248888888888889999999998888874 34433443343
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00034 Score=50.07 Aligned_cols=79 Identities=13% Similarity=0.325 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 011643 378 TMMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKG--------IVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~ 448 (480)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555666999999999999999999 899999999998877653 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 011643 449 KLRKLLIK 456 (480)
Q Consensus 449 ~l~~~~~~ 456 (480)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.024 Score=54.12 Aligned_cols=177 Identities=11% Similarity=0.021 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIM-------RKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
|.+..|..+.......-.++.|+..|-+...-. +.-..-+..+. ..-+--|.+++|.++|-.+..++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 789999999988888788888888886654321 11111111111 11223478899998887776543
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011643 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 244 (480)
..+..+.+.|++-...+++..-..+ ...-...|+.+...+.....|++|.+.|..-.. ....+.+
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 2456667778877777666543321 112235677777777777777777777655331 1223445
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHH
Q 011643 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
+.+...+++-+.+...+ +.+....-.+.+++.+.|--++|.+.|-
T Consensus 832 ly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 55555555544444333 2233344445555555555555555443
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.89 E-value=0.0011 Score=51.31 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=64.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 011643 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
+...+...|++++|.++|+.+....+.+..-|..|.-++-..|++++|+..|......++. |+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3444556777777777777777666667777777777777777777777777777766543 666677777777777777
Q ss_pred HHHHHHHHHHHH
Q 011643 426 SDSCVLLEDMIE 437 (480)
Q Consensus 426 ~~a~~~~~~~~~ 437 (480)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777777776664
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00096 Score=51.60 Aligned_cols=98 Identities=9% Similarity=0.066 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+......+...+...|++++|..+|+.+...++-+...|..|...+-..|++++|+..|......+ +.++..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334444555666778888888888888888888788888888888888888888888888887776 4677777777888
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011643 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~ 194 (480)
+...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877665
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00063 Score=62.28 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=62.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (480)
...+...|++++|++.|++....++.+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3444566677777777777776666666666666777777777777777777766654 345556666666666777777
Q ss_pred hHHHHHHHhhcCCCCChh
Q 011643 184 KAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~ 201 (480)
+|...|++.....+.+..
T Consensus 88 eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 777777666654333333
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00045 Score=49.44 Aligned_cols=73 Identities=27% Similarity=0.473 Sum_probs=40.2
Q ss_pred HhhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011643 279 TYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKAN--------KFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 349 (480)
.+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. +.-.++.+|++|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334555555555555555555 555555555555544432 233455566666666666666666666665
Q ss_pred HH
Q 011643 350 LI 351 (480)
Q Consensus 350 ~~ 351 (480)
+.
T Consensus 114 Ll 115 (120)
T PF08579_consen 114 LL 115 (120)
T ss_pred HH
Confidence 54
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.018 Score=49.47 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF---CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
++..+-.....+.+.|++++|.+.|+.+....|.+...- -.++.++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333343444455566777777777777766655333332 34455666677777777777766664
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.2e-05 Score=42.17 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=16.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHcC
Q 011643 202 TYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 230 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.01 Score=51.06 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=23.8
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhH---HHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 177 CKSKNVRKAQEIFDCMKDRFIPDSKTY---SILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
...|++++|.+.|+.+....+-+.... -.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544333222222 23344444555555555555555443
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=5.2e-05 Score=53.11 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 011643 354 GETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (480)
|+++.|+.+++++.+..+. +...+..+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555442221 233333345555555555555555544 11111 1222333334445555555555555
Q ss_pred HHH
Q 011643 432 LED 434 (480)
Q Consensus 432 ~~~ 434 (480)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.0021 Score=52.21 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011643 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444445555555555554443221111 234444444555555555555555554443333344444444444
Q ss_pred hcCCC
Q 011643 211 GKDPN 215 (480)
Q Consensus 211 ~~~~~ 215 (480)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0024 Score=51.87 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011643 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.....+.+...+..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555556666666666666666655432221 235556666666667777777766666665555556666666666
Q ss_pred HhcCCHHHHH
Q 011643 385 CQGGELEKAF 394 (480)
Q Consensus 385 ~~~g~~~~A~ 394 (480)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 6666544433
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0027 Score=60.85 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=94.0
Q ss_pred CCCCCHHHHHHHHHHHHH--cC---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC--------CChhHHHHHHHH
Q 011643 300 GILADVAMYNALIGAFCK--AN---KFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR--------GETDEAYRVFRR 365 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 365 (480)
+.+.+...|...+++... .+ +...|..+|++..+. .|+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345567777777776433 22 266788888888775 343 23344333333221 112333444444
Q ss_pred HHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 011643 366 MIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 366 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 443 (480)
... ..+.++..|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.++++... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 333 245566788888777777899999999999998876 68888888999999999999999999998864 455
Q ss_pred HHHH
Q 011643 444 GETF 447 (480)
Q Consensus 444 ~~~~ 447 (480)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4454
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=7.7e-05 Score=52.24 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011643 319 NKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (480)
|+++.|..+++++.+.... ++...+..+..++.+.|++++|..+++. .+..+.+......+.++|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555543221 1222333345555555555555555554 2211222233334455555555555555555
Q ss_pred HH
Q 011643 398 KY 399 (480)
Q Consensus 398 ~~ 399 (480)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0034 Score=60.22 Aligned_cols=140 Identities=9% Similarity=-0.030 Sum_probs=105.3
Q ss_pred CCCCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 011643 335 GVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG--------ELEKAFKVWKYMK 401 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~ 401 (480)
+...+...|...+++.... ++...|..+|+++.+..|.+...|..+..++.... +...+.+..++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3455778888888875432 33778999999999988888888887766654432 2334444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 402 LK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 402 ~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.. ....+...|..+.......|++++|...++++++.+ |+...|..+.+.+...|+.++|.+.+++..++++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 32 123355778877777777899999999999999865 68888999999999999999999999999988875
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.001 Score=53.82 Aligned_cols=79 Identities=9% Similarity=-0.084 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011643 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.|..+...+...|++++|+..|+........+ ...++..+..++...|++++|...+++.....+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555555555555555554332111 1234455555555555555555555555443333333444444443
Q ss_pred h
Q 011643 211 G 211 (480)
Q Consensus 211 ~ 211 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.67 E-value=0.011 Score=52.45 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHhc-CCHHHHHHHHHHhHh----CCCCc--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHH
Q 011643 245 LCKA-GRVDEALGIVKSMDS----TVCRP--TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-----DVA-MYNAL 311 (480)
Q Consensus 245 ~~~~-g~~~~a~~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l 311 (480)
|... |++++|.+.|++... .+ .+ -..++..+...+.+.|++++|.++|+++....... +.. .+...
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3344 555555555555432 11 11 12233445555666666666666666655432111 111 11222
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC
Q 011643 312 IGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
+-++...|+...|...+++....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 22444456666666666665543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.67 E-value=0.0023 Score=47.71 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCC---ChhhHHHHHHHHhc
Q 011643 138 MRKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGK 212 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 212 (480)
..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..++++....++. +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344455555555555555555554332 223444455555556666666655555443222 22222223334445
Q ss_pred CCChhHHHHHHHHHH
Q 011643 213 DPNLPRAREIFREMV 227 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~ 227 (480)
.|+.++|+..+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554443
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0013 Score=53.20 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011643 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+..+...+...|++++|...|++.......+ ...++..+...+...|+.++|+..++......+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555555555555555554432111 1124444555555555555555555555543333344444444444
Q ss_pred H
Q 011643 385 C 385 (480)
Q Consensus 385 ~ 385 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0039 Score=53.48 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011643 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l 415 (480)
|...|..|...|...|+.+.|..-|.+..+..++++..+..+..++.... ...++..+|+++...+.. |+.+...+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 77889999999999999999999999988877888888888887776543 345788889998887644 77777788
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC
Q 011643 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
...+...|++.+|...|+.|++..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC
Confidence 888888999999999999998754
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=7.4e-05 Score=40.66 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011643 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0035 Score=53.69 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=71.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHhhc
Q 011643 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK---NVRKAQEIFDCMKD 194 (480)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~ 194 (480)
.-++.-...+|.|.+.|..|...|...|+++.|..-|....+.. ++++..+..+..++.... ...++..+|+++..
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33344445566677777777777777777777777777766653 455555555555544322 24566677777766
Q ss_pred CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
..+.|+.+...|...+...|++.+|...|+.|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666666677777777777777777777777765
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00029 Score=46.93 Aligned_cols=53 Identities=11% Similarity=0.305 Sum_probs=33.2
Q ss_pred hCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
+.|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45666666666666666556666666666666666666666666666666543
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.63 E-value=0.047 Score=49.50 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF-SVLIN 417 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~ 417 (480)
..|...++...+...++.|..+|-+..+ + ..+++.++++++..++. |+..-|.++|+--..+- ||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 3566677777778888899999988887 3 66777888888887764 67788888888655432 454444 44566
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 418 GLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..-++-+.|..+|+..+.. +..+ ...|..++..-..-|+...+..+-+++..+-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 677888888999999876643 2223 56788888888888988888887777766544
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.049 Score=48.73 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 011643 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 309 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (480)
+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. +.++.-|..++.+|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 333444455555555555544432 24555566666666666666555544321 223345555556666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 011643 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (480)
+..+|..+...+ ++ ..-+..|.+.|++.+|.+..
T Consensus 252 ~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 666665555541 11 33344455556665555543
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.012 Score=52.54 Aligned_cols=298 Identities=11% Similarity=0.030 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 011643 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
........+.+..++..|+..+...++.. +.+...|..=...+...|++++|.--.+.-.+..+-......-.-+++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 34445677788888889999988888875 44555666556667777777777666555444222233344444444444
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CcCHHHHHHH-HHHhhccCCHHHHH
Q 011643 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVL-VHTYGVENRIEDAV 290 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~ 290 (480)
.++..+|...++ +...+ ....++..++.+..... +|...++..+ ..++...|++++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 555555554444 11111 12223333333322221 2434444433 35677889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH---H----------HHHHHhCCC
Q 011643 291 DTFLEMEKNGILADVAMYNALIG--AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI---I----------LNGLIGRGE 355 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l----------~~~~~~~~~ 355 (480)
..-..+.+.. ....+...++ ++.-.++.+.+...|++.+..+ |+...-.. . .+-..+.|.
T Consensus 190 ~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 190 SEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 8888777653 2233344443 3445778899999999888763 33322111 1 223467899
Q ss_pred hhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 011643 356 TDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 356 ~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (480)
+..|.+.+.+.+. ...++...|........+.|+.++|+.--++....+.. -+..|..-..++...+++++|.+-
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 45567777888888889999999999999988875311 122333333455566889999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 011643 432 LEDMIEKGIRP-SGETFGKLRKLLIKE 457 (480)
Q Consensus 432 ~~~~~~~~~~p-~~~~~~~l~~~~~~~ 457 (480)
+++..+..-.+ ...++.....++-+.
T Consensus 344 ~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 344 YEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHh
Confidence 99887543222 234455444444433
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.011 Score=46.76 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 172 (480)
|++.--..+...+.+.|+..+|...|++....-. .+....-.+.++....+++..|...++.+.+.+. ..++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5666667778888888888888888888765544 7777888888888888888888888888776531 0122334456
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
.+.+...|....|+.-|+....- -|+...-......+.+.|+.+++..-+.+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 67778888888888888877652 344444444444555666655554444333
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.55 E-value=0.045 Score=51.88 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
.+...+..-+.+...+.-|-++|..|-+. ..+++.....+++++|..+-++..+ .-...|....+.++
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhh
Confidence 33343444444455566666666655431 2345555666667766666555433 11123333444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011643 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
...++++|. .+|.+.|+..||.++++++....
T Consensus 816 E~DrFeEAq----------------------kAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQ----------------------KAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHH----------------------HHHHHhcchHHHHHHHHHhhhhh
Confidence 555554443 35677889999999999887543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00038 Score=46.38 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=34.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.|++++|+++|+.+....|.+...+..+...|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777766666666666666666666777777777666666654
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0087 Score=44.66 Aligned_cols=16 Identities=0% Similarity=0.007 Sum_probs=6.0
Q ss_pred cCCHhHHHHHHHHHHh
Q 011643 318 ANKFKNVYRVLKDMNS 333 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~ 333 (480)
.|+.++|..+|++...
T Consensus 14 ~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 14 LGREEEAIPLYRRALA 29 (120)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3333333333333333
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00061 Score=44.88 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
...+.+.|++++|.+.|+++....+.+...+..+...+...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777777777777667777777777777777777777777777654
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0023 Score=54.52 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 185 (480)
-+.+.+++++|+..|.+.....|.|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34566667777777777666666666666666666677776666666666666543 33445666666666666666666
Q ss_pred HHHHHHhhcC
Q 011643 186 QEIFDCMKDR 195 (480)
Q Consensus 186 ~~~~~~~~~~ 195 (480)
++.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 6666665553
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0015 Score=57.85 Aligned_cols=131 Identities=11% Similarity=-0.051 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh-----cCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHH
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIK-----LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMK----LKRFI-PSMHT 411 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~ 411 (480)
|..|...|.-.|+++.|+...+.-.. +.. .-...+..+..++.-.|+++.|.+.|+... +.|-. ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444555566666555443222 111 122345555566666666666666655432 22211 12233
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMIE----K-GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...+..+|.-..+++.|+.++.+-+. . ...-....+-+|..++...|..++|..+.+.-.++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44455555555556666655544321 1 11123344555666666666666666666555443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00089 Score=44.73 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcc
Q 011643 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMNLLV 474 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~l~ 474 (480)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++.+.| ++++|.+.+++..+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3445555555555555555555555555432 113344445555555555 4555555555555443
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00067 Score=44.69 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
...+...|++++|.+.|+++.+.... +...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555554421 445555555555555555555555555554
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0043 Score=50.52 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------CCChHHHHH
Q 011643 372 ADADTYTMMIKMFCQ-----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----------------KGIVSDSCV 430 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------------~g~~~~a~~ 430 (480)
.+..+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.|+..+=+ -.+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444442 24444444555555555555555555555554432 123456778
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011643 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
++++|...|+.||..|+..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888866554
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.43 E-value=0.09 Score=47.84 Aligned_cols=386 Identities=10% Similarity=0.107 Sum_probs=197.3
Q ss_pred HHHHHHHHHhhcCC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHcCCHHHHHH
Q 011643 79 LAFCFFKWAEKQQN---YEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK--YARVQKVEEAVY 152 (480)
Q Consensus 79 ~A~~~f~~~~~~~~---~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~ 152 (480)
+|.++|..+..... +... ....+.++++|. .++.+.....+....+..+ ...|..+..+ +-+.+.+++|.+
T Consensus 24 esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 24 ESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhhHHHHHH
Confidence 78888887754432 1112 223345666665 3456777777766666544 2234444433 347788999998
Q ss_pred HHHHHHhc--CCCCC---H---------HHHHHHHHHHHccCChhhHHHHHHHhhc-----CCCCChhhHHHHHHHHhcC
Q 011643 153 TFNVMQKY--GVTQN---L---------AAFNGLLSALCKSKNVRKAQEIFDCMKD-----RFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 153 ~~~~~~~~--~~~~~---~---------~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 213 (480)
.+....+. +..+. . ..=+..++++...|.+.++..+++++.. ....+..+|+.++-.+++.
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88777654 32321 1 1124556777889999999999998876 2346888888866666552
Q ss_pred CC---------------hhHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhHhCCCCcCH
Q 011643 214 PN---------------LPRAREIFREMVDT------GCNPDIVTYGIMVDVLCKAG--RVDEALGIVKSMDSTVCRPTS 270 (480)
Q Consensus 214 ~~---------------~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 270 (480)
=- ++.+.-...+|... .+.|.......++....-.. +..--.++++.....-+.|+.
T Consensus 181 YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~ 260 (549)
T PF07079_consen 181 YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNY 260 (549)
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCch
Confidence 10 11122222222211 12233333333333222111 111111222222222223332
Q ss_pred H-HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-------
Q 011643 271 F-IYSVLVHTYGVENRIEDAVDTFLEMEKNGILA----DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP------- 338 (480)
Q Consensus 271 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------- 338 (480)
. ....+...+.. +.+++..+-+.+....+.+ =..++..++....+.++...|...+.-+.-..+..
T Consensus 261 ~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kll 338 (549)
T PF07079_consen 261 DLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLL 338 (549)
T ss_pred hHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 1 11222222222 3333333333322211000 12334444445555555555555444333211000
Q ss_pred ------------Chhh------------------------HHHHH---HHHHhCCC-hhHHHHHHHHHHhcCCCCHHHHH
Q 011643 339 ------------NSRT------------------------CNIIL---NGLIGRGE-TDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 339 ------------~~~~------------------------~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
|... ...++ .-+-+.|. -++|+++++.+.+-.+.|...-+
T Consensus 339 ls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n 418 (549)
T PF07079_consen 339 LSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN 418 (549)
T ss_pred cCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH
Confidence 0000 11111 11233444 77788888888774445554444
Q ss_pred HHHH----HHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011643 379 MMIK----MFCQ---GGELEKAFKVWKYMKLKRFIPS----MHTFSVLING--LCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 379 ~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
.+.. +|.+ ...+..-.++-+-+.+.|++|- ...-|.+..| +...|++.++.-.-..+.+ +.|++.
T Consensus 419 ~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~ 496 (549)
T PF07079_consen 419 IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQ 496 (549)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHH
Confidence 3322 2322 2334444444455556777763 3344445443 4567999999887777765 789999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+.-++....++++|..++.++.
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999988999999999999988764
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.40 E-value=0.12 Score=48.76 Aligned_cols=134 Identities=11% Similarity=0.171 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..+|..--.....+.+...++.+...-|.-..-|......-.+.|..+.+.++|++-+. |++.+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 45556666665555555567777777777776665555666677777788888888888888876 46777777776665
Q ss_pred HHH-ccCChhhHHHHHHHhhcCC---CCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 175 ALC-KSKNVRKAQEIFDCMKDRF---IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 175 ~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
.+. ..|+.+.....|+....-. -.+...|...|..-...+++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 443 4567777777888776621 234556777888777888888888888888764
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.066 Score=44.98 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=95.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH----
Q 011643 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL---- 347 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---- 347 (480)
+.+.++.++.-.|.+.-....++++++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556677777778888888888888887666677778888888888888888888888766543333443443333
Q ss_pred -HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 348 -NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 348 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
..+.-.+++..|...+.++....+.++...|.-.-+..-.|+..+|.+.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334556777778888877777666677766665566666788888888888888764
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00099 Score=44.49 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQK 159 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 159 (480)
++.+|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666667777777777777777776666666666677777777776 56777776666654
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0028 Score=56.29 Aligned_cols=283 Identities=15% Similarity=0.089 Sum_probs=145.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhh------cCCCCChhhHHHHHH
Q 011643 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMK------DRFIPDSKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~~~~l~~ 208 (480)
.-+++.|+....+.+|+..++.| ..|.. +|..|..+|.-.+++++|.+....=. ....-...+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788999999999999999887 34443 45556667777778888877653211 111112233344444
Q ss_pred HHhcCCChhHHHHHHHHH----HHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc
Q 011643 209 GWGKDPNLPRAREIFREM----VDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+--.|.+++|+-.-.+- .+.|-. .....+..+.+.|...|+.-.... -...|-.+...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 444556666665543332 122210 112233334444444432110000 000010111000
Q ss_pred CCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhC
Q 011643 284 NRIEDAVDTFLEME----KNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KGVA-PNSRTCNIILNGLIGR 353 (480)
Q Consensus 284 g~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~ 353 (480)
..++.|.+.|.+-. +.|- -.-...|..|...|.-.|+++.|....+.-.+ -|-. .....+..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01223333333211 1110 01123455555556666777777665544322 1211 1234566677777777
Q ss_pred CChhHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhC
Q 011643 354 GETDEAYRVFRRMIK------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL----K-RFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~ 422 (480)
|+++.|.+.++.... .-........+|..+|.-..++++|+.++++-.. . +..-....+..+..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 888888877776543 1122344555677777777778888877664321 1 1112456777788888888
Q ss_pred CChHHHHHHHHHHHH
Q 011643 423 GIVSDSCVLLEDMIE 437 (480)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (480)
|..+.|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777666553
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.076 Score=44.64 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCHHH-----HHH
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADT-----YTM 379 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-----~~~ 379 (480)
.+.+.++..+.-.|.+.-....+.+..+...+.++.....+.+.-.+.||.+.|...|++..+ ....|..+ ...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 445667777777888888999999999987777888899999999999999999999998776 33333333 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 448 (480)
....|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|... .|.+.+-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444566678888899999888877643 5555555555556679999999999999875 34444433
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0072 Score=49.28 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHH
Q 011643 198 PDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272 (480)
Q Consensus 198 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (480)
.+..+|..+++.+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366666666666653 34555566666666666666677777766666554 3221 1111111110
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011643 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
-.-.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0113456778888889888888898888888888877664
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.31 E-value=0.036 Score=46.37 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+-.....+...|++.+|.+.|+.+....+ ......-.++.++-+.|+++.|...++.+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344455666777777777777766544 33445555666666777777777777666554
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.062 Score=42.62 Aligned_cols=130 Identities=10% Similarity=0.066 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCHHHHHHH
Q 011643 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMM 380 (480)
Q Consensus 303 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 380 (480)
|+...-..|..+....|+..+|...|++...--+.-|......+.++....+++..|...++.+.+-. ..++.+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45555555666666666666666666666654444455566666666666666666666666665511 1122233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 011643 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
.+.+...|.+.+|+.-|+.....- |+...-......+.+.|+.+++..-+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 566666777777777777766653 3433333344445666665555543333
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.21 E-value=0.036 Score=43.31 Aligned_cols=87 Identities=13% Similarity=-0.029 Sum_probs=60.6
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 011643 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (480)
+...|++++|..+|+-+..-.+.+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 446677777777777777655666666777777777777788887777766554432 4444555667777777888888
Q ss_pred HHHHHHHH
Q 011643 430 VLLEDMIE 437 (480)
Q Consensus 430 ~~~~~~~~ 437 (480)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 87777766
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.097 Score=43.76 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 011643 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPS---GETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+...|.+.|.+..|..-++.+++. .+-+ ...+..++.++.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 455677777777777777777754 1111 223455667777777766443
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.016 Score=45.54 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETF 447 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 447 (480)
+...++..+...|++++|..+.+.+....+. +...|..++.+|...|+..+|.+.|+++. +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445566666677777777777777665532 56677777777777777777777776664 34777766654
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.012 Score=51.05 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 011643 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLS 174 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~ 174 (480)
|...+..+.+.|++++|...|+.+....|.+ +.++..+...|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555555544411 3444555555555555555555555554321 0111222333333
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011643 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~ 194 (480)
++...|+.++|..+|+.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555444
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.04 Score=43.07 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=70.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011643 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
.-+...|++++|..+|.-+.-.++. +..-+..|..++-..+++++|...|.......+.|+..+-....+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456788999999999888775444 555677778888888899999998888776555666667777888889999999
Q ss_pred HHHHHHHHHhC
Q 011643 393 AFKVWKYMKLK 403 (480)
Q Consensus 393 A~~~~~~~~~~ 403 (480)
|...|+....+
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99998888774
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.0071 Score=47.58 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ-----KYGVTQNLAAF 169 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 169 (480)
+...++..+...|+++.|..+.+.+...+|.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445556666777888888888888888777788888888888888888888888877663 34777776553
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0054 Score=41.39 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.|.+.+++++|.++++.+...++. +...|......+...|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444444322 334444444444444444444444444443
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.23 Score=44.58 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011643 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-.++... + -++.-|..++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 3466667777888999988888866654 48888999999999999999988876543 2 1447799999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
.+.|...+|..+..++ . + ..-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998872 2 2 3455677788888888666543
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.024 Score=49.17 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCH
Q 011643 316 CKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 390 (480)
.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|+.+.+..+. ....+..+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334444444444444444311100 123333444444444444444444444432222 222233333344444444
Q ss_pred HHHHHHHHHHHh
Q 011643 391 EKAFKVWKYMKL 402 (480)
Q Consensus 391 ~~A~~~~~~~~~ 402 (480)
++|.++|+.+++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.39 Score=46.39 Aligned_cols=286 Identities=14% Similarity=0.123 Sum_probs=137.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChhhHHH
Q 011643 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV--TQNLAAFNGLLSALCKSKNVRKAQE 187 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 187 (480)
-|+|++|+++|-.+.+++ ..|..+.+.|++-...++++.--. +. ..-..+++.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999988877664 345566677777666666543110 00 0112456666666666667777777
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 011643 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
.|..-.. ....+.++.+..++++-+.+...+.+ +....-.+..++.+.|.-++|.+.+-+.- .
T Consensus 818 yY~~~~~--------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~ 880 (1189)
T KOG2041|consen 818 YYSYCGD--------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----L 880 (1189)
T ss_pred HHHhccc--------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----C
Confidence 6654432 12244555555555554444433322 44444555566666666666655543321 1
Q ss_pred cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--
Q 011643 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-----------ADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-- 334 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 334 (480)
|. ..+..|...+++.+|.++-+...-..+. .+.. ....|..+.+.|+.-.|-+++.+|.+.
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~ 954 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQ 954 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHh
Confidence 11 2334445555555555544432210000 0000 111234455666666666666655432
Q ss_pred --CCCCChh----hHHHHH-HHH----------HhCCChhHHHHHHHHHHh--------cC--CCCHHHHHHHHHHHHhc
Q 011643 335 --GVAPNSR----TCNIIL-NGL----------IGRGETDEAYRVFRRMIK--------LC--EADADTYTMMIKMFCQG 387 (480)
Q Consensus 335 --~~~p~~~----~~~~l~-~~~----------~~~~~~~~a~~~~~~~~~--------~~--~~~~~~~~~l~~~~~~~ 387 (480)
+.++-.. ...+++ .-+ -+.|..++|..+++...- +. -.....|..|.+-....
T Consensus 955 ~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~e 1034 (1189)
T KOG2041|consen 955 EKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFE 1034 (1189)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 2221111 111111 000 123445555544433221 00 01223344455555567
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHH
Q 011643 388 GELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 388 g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
|.++.|.+.--.+.+. ++-|....|+.+.-+-|....+.-
T Consensus 1035 g~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1035 GRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGT 1075 (1189)
T ss_pred chHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhh
Confidence 7787777654444432 455667777766655554443333
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.27 Score=44.59 Aligned_cols=167 Identities=12% Similarity=0.082 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011643 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCK---ANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
.+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|..++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455567888888888888888887641 11122222233345556 788888888888866665667777888
Q ss_pred HHHHHHHh---------CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HH-HHhCCCC-
Q 011643 345 IILNGLIG---------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE-LE---KAFKVW---KY-MKLKRFI- 406 (480)
Q Consensus 345 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~~~~~~~- 406 (480)
.+...|-. ....+.|...+.+.-+.. ++..+--.++..+...|. .+ +..++- .. +.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 87776632 123555666666554422 332222222222222332 11 222322 11 1122221
Q ss_pred --CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 407 --PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 407 --p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.+--.+..++.++.-.|+.++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22333445566666677777777777777654
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.93 E-value=0.28 Score=43.91 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=76.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcC
Q 011643 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 388 (480)
..++.+.|+..++-.+++.+-+..+.|+. ...|.....-+.++.-+++..+ .-+.+......+.++-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 35677888888888888888776444442 2334444444445555555444 23445566667777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHcC
Q 011643 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD-KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~ 439 (480)
++..|..--+..... .|....|..|...-.. .|+-.++...+.+.....
T Consensus 344 e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 344 EFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 888777766665543 3677777777665443 488888888887777643
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.92 E-value=0.32 Score=44.44 Aligned_cols=377 Identities=10% Similarity=0.041 Sum_probs=209.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.-+++-+.+...+ .|..+|-.+|..+...+..++..+++++|...-+.-+.+|..-+.+-...+++.....+|.+..
T Consensus 27 D~lrLRerIkdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3457888886554 5999999999999999999999999999998877777889999998888999999999999888
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChh------hHHHHHHHhhc--CCCC-ChhhHHHHHHHH---hcCCCh------hHHH
Q 011643 159 KYGVTQNLAAFNGLLSALCKSKNVR------KAQEIFDCMKD--RFIP-DSKTYSILLEGW---GKDPNL------PRAR 220 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~--~~~~-~~~~~~~l~~~~---~~~~~~------~~a~ 220 (480)
... .+...|...+.--.+.+..- ...+.|+-... .+.| ....|+..+..+ -..|.+ +...
T Consensus 104 ~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 764 45667777775444433211 12233333333 3333 344566555443 234444 4455
Q ss_pred HHHHHHHHcCCCCChhhHH------HHHHHHH-------hcCCHHHHHHHHHHhHh--CCC----CcCHHHHHH------
Q 011643 221 EIFREMVDTGCNPDIVTYG------IMVDVLC-------KAGRVDEALGIVKSMDS--TVC----RPTSFIYSV------ 275 (480)
Q Consensus 221 ~~~~~m~~~~~~~~~~~~~------~l~~~~~-------~~g~~~~a~~~~~~~~~--~~~----~~~~~~~~~------ 275 (480)
..+.+|+..-+.-=...|+ .=++... ...-+-.|...++++.. .|. +.+..+++-
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 5566665421110011111 1111100 01123455555555532 121 111222221
Q ss_pred -----HHHHhhcc-----CC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011643 276 -----LVHTYGVE-----NR-I-EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 276 -----l~~~~~~~-----g~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
.|..-... |+ . ...--++++.... +.-....|----.-+...++-+.|......-.+. .|+...
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~- 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM- 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe-
Confidence 22211111 11 1 1112223333221 1123333333333344556666666665543332 222100
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh------------------------------cCCCCHHHHHHHHHHHHhcCCHHHH
Q 011643 344 NIILNGLIGRGETDEAYRVFRRMIK------------------------------LCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
.+...|.-..+.+.....|+.... ....-..+|..++.+..+...++.|
T Consensus 338 -~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 338 -FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred -eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 111112222222222222221110 0112234577788888888999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 011643 394 FKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 394 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
..+|-+..+.+ +.+++..+++++..++. |+..-|.++|+--+.. .||... ....+..+.+-++-+.|..+++
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999888 56788889999987765 7888999999877653 244443 3455667777788888888877
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.32 Score=43.56 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=173.9
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHH--HhcCCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHH
Q 011643 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 253 (480)
-.|+-..|.+.-.+..+....|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35666667666666554333344444444433 33468888888888888752 2211 12223333356788888
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--HH-cCCHhHHHHH
Q 011643 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAM--YNALIGAF--CK-ANKFKNVYRV 327 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~--~~-~~~~~~a~~~ 327 (480)
|..+-+..-..- +.-.......+...+..|+++.|+++++.-.... +.++..- -..|+.+- .. ..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 888777765542 3335567778888888888888888888765432 2233221 12222211 11 2345556555
Q ss_pred HHHHHhCCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 011643 328 LKDMNSKGVAPNSR-TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RF 405 (480)
Q Consensus 328 ~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 405 (480)
-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+. .|.+.++.. ..+.+.|+. +..-+++.... ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIALL--YVRARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhc
Confidence 555544 355543 2334457788999999999999999873 345544432 233445543 33333333211 12
Q ss_pred CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCC
Q 011643 406 IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+| +..+...+..+-...|++..|..--+.... ..|....|..+.+.-.. .|+-.++..++-+..+....|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 23 566777788888889999888877776664 56788888877776555 599999999988877665544
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.80 E-value=0.012 Score=39.68 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011643 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+.+.++++.|++.++.+...+|.+...+......+.+.|++++|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456677777777777777777777777777777777777777777777777777653
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.74 E-value=0.37 Score=42.62 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011643 306 AMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.++..++.+|...+.. ++|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|..........+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 4556667777776654 3455666666544222 24455555666666888888888888888854434444554444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH-HH---HHHhCCC------hHHHHHHHHHHHH-cCCCCCHHHH
Q 011643 383 MF---CQGGELEKAFKVWKYMKLKRFIPSMH-TFSVL-IN---GLCDKGI------VSDSCVLLEDMIE-KGIRPSGETF 447 (480)
Q Consensus 383 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l-~~---~~~~~g~------~~~a~~~~~~~~~-~~~~p~~~~~ 447 (480)
.+ ... ....|...+..+....+.|... ....+ +. .....++ .+....++..... .+.+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 333 3445666666655444444443 11111 11 1112111 3444444443322 2334444443
Q ss_pred HHHH-------HHHHhcCCHHHHHHHHHHH
Q 011643 448 GKLR-------KLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 448 ~~l~-------~~~~~~g~~~~a~~~~~~~ 470 (480)
.++. ..+.+.+++++|.++++-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3332 3456788999999998843
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.69 E-value=0.4 Score=42.39 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=66.7
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCHHHHHHHHH-------HHHHcC-CHHHHHHHHHHHHhc--------CCCCCH----
Q 011643 108 AKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMR-------KYARVQ-KVEEAVYTFNVMQKY--------GVTQNL---- 166 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~-------~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 166 (480)
.+.|+++.|..++.++.... ..++.....+.+ .....+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876654 233333222222 233444 677776666554332 112222
Q ss_pred -HHHHHHHHHHHccCCh---hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 167 -AAFNGLLSALCKSKNV---RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 167 -~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
.++..++.+|...+.. ++|.++++.+....+..+.++..-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445555666555553 34455555554444444555555566666666677777777777654
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.29 Score=40.83 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIEKG---IRPSGETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
...|-.+....++..|.++++.--..+ -.-+..+...|+.+| ..|+.+++.++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 333334444455555555555432211 112334444455444 23444444443
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.54 E-value=0.69 Score=44.35 Aligned_cols=128 Identities=14% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHH------hHhCCC---CcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011643 242 VDVLCKAGRVDEALGIVKS------MDSTVC---RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
...+...|+.++|..+.-+ +.+.+. ..+..+...+...+-+...+.-|-++|..|-. ...++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 4445556666666554321 111111 22334444555555666777788888887753 23567
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011643 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
+.....+++.+|+.+-+...+- .||+ |..-.+-++...++++|. ++|.++|+-.+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAq---------------------kAfhkAGr~~E 835 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQ---------------------KAFHKAGRQRE 835 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHH---------------------HHHHHhcchHH
Confidence 7888899999999998876653 3443 333444445556666554 45667899999
Q ss_pred HHHHHHHHHhC
Q 011643 393 AFKVWKYMKLK 403 (480)
Q Consensus 393 A~~~~~~~~~~ 403 (480)
|.++++++...
T Consensus 836 A~~vLeQLtnn 846 (1081)
T KOG1538|consen 836 AVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHhhhh
Confidence 99999988653
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.23 Score=47.43 Aligned_cols=121 Identities=16% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhCCChHHHH
Q 011643 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR--F-IPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~ 429 (480)
..+.+.|.++++.+.+..|.+..-.-.-.+.+...|++++|.+.|+...... . ......+-.+...+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3455666677777666555444444444566666777777777777554311 0 011233444555566667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHhcc
Q 011643 430 VLLEDMIEKGIRPSGETFGKLRKL-LIKEGRE-------DVLKFLQEKMNLLV 474 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~l~ 474 (480)
+.|..+.+.. ..+..+|..+..+ +...|+. ++|.++++++..+.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7777777543 2344444433322 3345555 67777777666543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.48 E-value=0.01 Score=40.65 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK--GIRPS----GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
+++.+...|...|++++|+..|++.++. ...++ ..++..+..++...|++++|.+++++..++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555555566666666655555522 01111 233455555566666666666666655543
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.48 E-value=0.23 Score=37.02 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
....+..+...|+-+.-.++...+.+...+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444555555555555555544444555555555555555555555555555555554
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.98 Score=44.15 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011643 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.....+.+--+..+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-+++-+... ++.-|...+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 3444566667777788888888888877665 4788888888888888888888777665543 234677788
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
.+|.+.|+.++|.+++.+.. +.. -...+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 88999999999998887642 111 45677778888777766553
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.46 E-value=0.67 Score=42.18 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCC---CCcCHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011643 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGV---ENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+...++-.|....+++...++++.+.... +..+...-.....++.+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455557888999999999999998752 11222333344556666 8999999999999766666778889988
Q ss_pred HHHHHHH----c-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hh---HHHHHH---HHHH--h---c
Q 011643 311 LIGAFCK----A-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TD---EAYRVF---RRMI--K---L 369 (480)
Q Consensus 311 li~~~~~----~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~~--~---~ 369 (480)
+...|-. . ...++|...|.+.-+. .|+..+=-.++..+...|. .+ +..++- ..+. + .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8877643 1 2356777777766654 2443322222222223332 22 223333 1111 1 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
...+...+..++.++.-.|+.++|.+..+.|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33566677889999999999999999999998764
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.065 Score=40.45 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 011643 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLIN 417 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 417 (480)
.|+..+..+++.+|+..|++..|.++.+.+.+. +++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555544432 34434445555544
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.44 E-value=0.084 Score=39.85 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhc
Q 011643 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKE 457 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~ 457 (480)
....|+..+..+++.+|+..|++..|+++++... ..+++.+..+|..|+.-....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3466899999999999999999999999999998 457888899999998866543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.44 E-value=0.1 Score=39.84 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+..+-.-.....+.|++++|.+.|+.+..+-| -...+-..++.+|.+.+++++|...+++.++........-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33333445556678888888888888888766 455667778888888888888888888888765332233454455
Q ss_pred HHHHc
Q 011643 174 SALCK 178 (480)
Q Consensus 174 ~~~~~ 178 (480)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.39 E-value=0.2 Score=47.93 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-CCCh------hhHHHHHHHHhc----CCChh
Q 011643 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDS------KTYSILLEGWGK----DPNLP 217 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~ 217 (480)
-..-+|.-+.+. +||. +..+++...-.||-+.+++.+.+..+.. ...+ -.|...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334555555553 3443 3446666667788888888887765511 1111 224444444433 45678
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhHhCC---CCcCHHHHHHHHHHhhccCCHHHHHHHH
Q 011643 218 RAREIFREMVDTGCNPDIVTYGIM-VDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 218 ~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
.|.++++.+.+. -|+...|... .+.+...|++++|++.++...... .+.....+--+.-++....++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 899999988875 4666555443 356677899999999998754311 1122334455667788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHcCCH-------hHHHHHHHHHHh
Q 011643 294 LEMEKNGILADVAMYNALIG-AFCKANKF-------KNVYRVLKDMNS 333 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~-~~~~~~~~-------~~a~~~~~~~~~ 333 (480)
..+.+..-- +...|.-+.. ++...|+. ++|..+|.+...
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 998875432 3444444332 44556766 888888887654
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.38 E-value=0.51 Score=39.95 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
..|+. +..-.+.|++++|.+.|+.+..+.| -...+...++-++-+.+++++|+..+++....-.......|...|.
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34443 4445678889999999999887766 3456666777778888899999998888876532222334545555
Q ss_pred HHHc-------cCChhhHHHHHHHh---hcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011643 175 ALCK-------SKNVRKAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 175 ~~~~-------~g~~~~a~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 244 (480)
+++. ..|...+.+.+..+ ...+|.+..+ ..|..-+..+... =...=..+.+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5542 22333333333333 3333322211 1111111111100 00001234456
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCcCHH---HHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011643 245 LCKAGRVDEALGIVKSMDSTVCRPTSF---IYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
|.+.|.+..|..-++.|.+. .+.+.. .+-.+..+|...|-.++|.+.-.-+..+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 67777777777777766655 232322 2344556666677666666655555443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.37 E-value=0.12 Score=47.54 Aligned_cols=67 Identities=6% Similarity=-0.156 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+.++..|+.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999988888555 45999999999999999999999998875
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.012 Score=40.30 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+|+.+...|...|++++|...+++..+. |.. |+ ..++..+...+...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444443321 100 11 2344444555555555555555555443
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.36 E-value=0.11 Score=47.80 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=49.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+...++.+..+|.+.|++++|+..|++.++..+.+. .+|..+..+|...|+.++|...++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677778888888888888888888777555554 34788888888888888888888888774
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.30 E-value=0.28 Score=38.08 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=16.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (480)
+..+.+.+.......+++.+...+..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 3333333444444444444443333333344444444443
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.14 E-value=0.2 Score=47.21 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=32.2
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011643 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
.+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..++-.|...|+.+.-.+
T Consensus 329 l~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHCT-HHHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34455555544433222 344555555555555555555555444332 3333444444555444444
Q ss_pred HHHHhHh
Q 011643 257 IVKSMDS 263 (480)
Q Consensus 257 ~~~~~~~ 263 (480)
+.+....
T Consensus 395 l~~~a~~ 401 (443)
T PF04053_consen 395 LAKIAEE 401 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.79 Score=39.66 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=62.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 185 (480)
.....|++.+|..+|+......+-+...-..++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666777777766666665555566666666666666666666666655432111111112223333333333333
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 011643 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 227 (480)
..+-.+.-. .+.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333222 13345555555556666666666666555554
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.08 E-value=0.2 Score=47.13 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 011643 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 323 (480)
...-.++++++.++...-.-.. .-+....+.++..+.+.|-.+.|+.+..+-.. -.....+.|+.+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 3445667777666554111000 11234466677777777777777765543221 1234456777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
|.++.++. .+...|..|.......|+++-|++.|.+... +..|+-.|...|+.+.-.++.+.....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 76654332 2556777777777777888888777777553 566666777777777777777666665
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 011643 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
| -++....++...|+.++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 234444455555666666666554
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.18 Score=45.43 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLL 454 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~ 454 (480)
++..+.-+|.+.+++.+|++..++....+. +|....-.-..+|...|+++.|...|+++++. .|+..... .++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 455566666666667777666666666553 35555555666666667777777777766653 34443333 333333
Q ss_pred HhcCC-HHHHHHHHHHHHh
Q 011643 455 IKEGR-EDVLKFLQEKMNL 472 (480)
Q Consensus 455 ~~~g~-~~~a~~~~~~~~~ 472 (480)
.+... .+...++|.+|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33322 2333555555543
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.14 Score=46.09 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT-FSVLINGL 419 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~ 419 (480)
..++.+..++.+.+++..|++.....+...++|....-.-.++|...|+++.|+..|+++.+.. |+... -+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 3567788889999999999999999999888999998888999999999999999999999875 44444 44444443
Q ss_pred HhCCChHH-HHHHHHHHHH
Q 011643 420 CDKGIVSD-SCVLLEDMIE 437 (480)
Q Consensus 420 ~~~g~~~~-a~~~~~~~~~ 437 (480)
-+..+..+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 34344333 3667777764
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.93 E-value=0.22 Score=36.99 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=65.8
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhCCC
Q 011643 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSM---HTFSVLINGLCDKGI 424 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~ 424 (480)
+....|+++.|++.|.+.....|.....||.-.+++.-.|+.++|..-+++..+. |.. .. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888888877788888888888888888888888888877764 322 22 223333345667788
Q ss_pred hHHHHHHHHHHHHcCC
Q 011643 425 VSDSCVLLEDMIEKGI 440 (480)
Q Consensus 425 ~~~a~~~~~~~~~~~~ 440 (480)
-+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888777663
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1 Score=39.04 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=20.7
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 011643 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
..|++.+|..+|.......+.+...-..++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3344444444444443332333333444444444444444444444443
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.2 Score=42.77 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHH
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG-V-TQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll 173 (480)
.|+.-+..+ +.|++..|...|.......| .....+.-|...+...|+++.|..+|..+.+.- - +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 34445555555555555444 334444455555555555555555554444321 0 11123344444
Q ss_pred HHHHccCChhhHHHHHHHhhcCC
Q 011643 174 SALCKSKNVRKAQEIFDCMKDRF 196 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~ 196 (480)
.+..+.|+.++|...|+++.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 44455555555555555554443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.84 E-value=0.58 Score=43.40 Aligned_cols=78 Identities=6% Similarity=0.086 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+|.++-++..+..+.|+.....+..+..-.++++.|...|++....++. ...+|......+...|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444444445555554444444445555555555555444311 22333333333444455555555555544
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=0.95 Score=42.04 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 011643 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
..+|.++-+...+.+ +.|+.+...+..+..-.++++.|..+|++...-.|....+|....-.+.-.|+.++|.+.+++.
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555554 4555555555555555555666666666665544444455555555555556666666666664
Q ss_pred HH
Q 011643 227 VD 228 (480)
Q Consensus 227 ~~ 228 (480)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 44
No 247
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.70 E-value=2 Score=41.00 Aligned_cols=185 Identities=9% Similarity=-0.025 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011643 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+|..-+..-...|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+-..+ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 4556777777777888888888888776532 1111223333344444457777777776665543222 2222222222
Q ss_pred H-HHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----H
Q 011643 349 G-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF---KVWKYMKLKRFIPSMHTFSVLING-----L 419 (480)
Q Consensus 349 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~-----~ 419 (480)
. +-..|+.+.|..+++.+.+..+.....-..-+....+.|+.+.+. .++........ +......+.-- +
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHH
Confidence 2 234578888888888888766333333344455566777777777 33333322111 22222222211 2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011643 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
.-.++.+.|..++.++.+. +.++...|..++..+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3356788888888888764 4556666777776665544
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.69 E-value=0.04 Score=32.63 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 133 TFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
++..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.66 E-value=1.8 Score=39.95 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=73.3
Q ss_pred CHhHHHHHHHHHHhCCCCC-ChhhHHHH----HHHHHh---CCChhHHHHHHHHHHh-cCCC----CHHHHHHHHHH--H
Q 011643 320 KFKNVYRVLKDMNSKGVAP-NSRTCNII----LNGLIG---RGETDEAYRVFRRMIK-LCEA----DADTYTMMIKM--F 384 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~-~~~~----~~~~~~~l~~~--~ 384 (480)
.-++|..+++.+.+- .+ |...-|.+ =..|.+ ...+.+-..+-+-+.+ +.+| +...-|.|.++ +
T Consensus 395 ~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 395 CDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred ccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 367777777777663 22 22222221 122222 1223333333333333 4443 33444555443 4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011643 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 385 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 449 (480)
...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.. ++|+..++.+
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 567999998776555554 568999999999999999999999999986 4677777654
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=1.4 Score=43.67 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011643 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
+.+.|++++|...|-+-...- .|+ .++.-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 344555555555544443321 111 1233334444445555555555555543 333444555556665555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
.++.+... .|.. ..-....+..+.+.+-.++|..+-.+.. .+......++ -..+++++|.+.+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 54444333 1111 1113334444444444444444433322 1222222222 2335566666555543
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.28 Score=41.88 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHH
Q 011643 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-P-SMHTFSVLI 416 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~ 416 (480)
.|+..+.. .+.|++..|...|...++..|. .+..+--|..++...|+++.|..+|..+.+.-.. | -+.++.-+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555543 3455566666666666663332 2334455666666666666666666666543211 1 124555555
Q ss_pred HHHHhCCChHHHHHHHHHHHHc
Q 011643 417 NGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666653
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.54 E-value=3.6 Score=42.77 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCC--ChhHHHHHHHHHH
Q 011643 203 YSILLEGWGKDP--NLPRAREIFREMV 227 (480)
Q Consensus 203 ~~~l~~~~~~~~--~~~~a~~~~~~m~ 227 (480)
...+|..|.+.+ .+++|++...+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455555544 4444554444444
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=1.1 Score=39.40 Aligned_cols=152 Identities=14% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH----HHHHHHHhcCCChh
Q 011643 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY----SILLEGWGKDPNLP 217 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 217 (480)
.-.|++.+|-..++++.+. .|.|...++..=.+|.-.|+...-...++++.....++...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666666653 466666666666777777777777777777665444444333 23344455677777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCc---CHHHHHHHHHHhhccCCHHHHHHHHH
Q 011643 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP---TSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 218 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
+|++.-++..+.+. -|...-.+....+--.|+..++.++..+-...--.. -.+-|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 77777777665542 255555666666667777777777666543321100 01111122233445577777777776
Q ss_pred H
Q 011643 295 E 295 (480)
Q Consensus 295 ~ 295 (480)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.39 E-value=0.074 Score=31.46 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 377 YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+..+...|...|++++|.++++++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.36 E-value=0.52 Score=40.30 Aligned_cols=84 Identities=19% Similarity=0.128 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011643 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK----------------GIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 390 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
++-.-..++.|.+.|+.-|..+|..|+..+-+. ..-+=++.++++|...|+.||..+-..|+.+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 333334444555555555555555555443321 1223467788888888888888888888888
Q ss_pred HHhcCC-HHHHHHHHHHHHhc
Q 011643 454 LIKEGR-EDVLKFLQEKMNLL 473 (480)
Q Consensus 454 ~~~~g~-~~~a~~~~~~~~~l 473 (480)
+.+.|- .....++.--|.++
T Consensus 168 FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred hccccccHHHHHHHHHhhhhh
Confidence 877664 34444444444443
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.24 E-value=0.31 Score=42.26 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 011643 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-----YGVTQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll 173 (480)
++..++..+...|+++.+.+.++++....+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455566666666667777777776666666666677777777777776666666665543 45666655555444
Q ss_pred HH
Q 011643 174 SA 175 (480)
Q Consensus 174 ~~ 175 (480)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.20 E-value=1.7 Score=36.92 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=8.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011643 382 KMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~ 402 (480)
+.|.+.|.+..|..-+++|.+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHh
Confidence 334444444444444444443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.10 E-value=1.2 Score=34.57 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011643 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+...+.......+++.+...+. .+...++.++..|++.+. .+....+.. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 33444444455555555555544432 344455555555554322 222222221 1123334445555555555
Q ss_pred hhHHHHHHHHH
Q 011643 356 TDEAYRVFRRM 366 (480)
Q Consensus 356 ~~~a~~~~~~~ 366 (480)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.04 E-value=2.8 Score=38.58 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP---SGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
.+|..++..+.+.|.++.|...+.++...+... .+.....-++.+...|+.++|...++...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555444444322110 22222233344444454444444444443
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.01 E-value=5.4 Score=41.65 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=59.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011643 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
...+...+.+++|--.|+..-+ ..-.+.+|...|++.+|+.+..++..+-..-..+-..|+.-+...++.-
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccch
Confidence 3334445566666555544322 1224556667777777777776665321111222355666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
+|-++..+.... | ...+..+++...+++|+++....
T Consensus 1017 eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 777777766542 1 22333455556667776665544
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=1.1 Score=39.45 Aligned_cols=155 Identities=7% Similarity=-0.147 Sum_probs=109.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCCh
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~ 182 (480)
.+...|++.+|-..++++...-|.+.-.+...=.+|.-.|+...-...++++... ++|-...+...+.-++..+|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456788888888899988888777777887888888899988888888887654 2222233333444556678999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc---C-CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011643 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---G-CNPDIVTYGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (480)
++|++.-++..+-.+.|.-...++...+--.|++.++.+...+-... + ..... -|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH-NyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH-NYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh-hhHHHHHhhhcccchhHHHHHH
Confidence 99999998888866777778888888888889999988876654321 0 00011 1212223456678999999998
Q ss_pred HHh
Q 011643 259 KSM 261 (480)
Q Consensus 259 ~~~ 261 (480)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 754
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.90 E-value=2.1 Score=36.30 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=44.1
Q ss_pred HHhCCChhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011643 350 LIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
+...++.+.+...+.......+. ....+..+...+...+.++.|...+......... ....+..+...+...+..+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 44445555555555555553333 3455555555555555666666666655543211 123333333333344556666
Q ss_pred HHHHHHHHH
Q 011643 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...+.+...
T Consensus 256 ~~~~~~~~~ 264 (291)
T COG0457 256 LEALEKALE 264 (291)
T ss_pred HHHHHHHHH
Confidence 666666554
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.86 E-value=1.5 Score=34.44 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=23.0
Q ss_pred hCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+.++.+.+..++..+.-.-|.....-..-...+...|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555444322222222222233344555555555555555443
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.84 E-value=1 Score=34.51 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=41.0
Q ss_pred HHhCCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011643 350 LIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+.|++++|.+.|+.+....| -....--.++.+|.+.+++++|...+++.++..+.-...-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3456777777777777666333 2334555667777777777777777777776543222233444444433
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.81 E-value=2.2 Score=36.14 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=149.2
Q ss_pred CCHHHHHHHHHHhHhCCCC-cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011643 249 GRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYR 326 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 326 (480)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443211 13455666677777778888777777776642 223355566666667777777888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHhCCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 327 VLKDMNSKGVAPNSRTCNIILN-GLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 327 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
.+.........+ ......... .+...|+++.|...+.......+ .....+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877754333 122222233 67888999999999998866222 2334445555557788999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.........+..+...+...++.+.|...+......... ....+......+...|..+++...+.+..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 642213677888888899999999999999999874322 244455555555577778999988887766543
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.80 E-value=0.51 Score=40.96 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-----KGIRPSGETFGKL 450 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 450 (480)
++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+++.. .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3344444455555555555555555544322 444555555555555555555555544432 3555555444443
Q ss_pred HH
Q 011643 451 RK 452 (480)
Q Consensus 451 ~~ 452 (480)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.79 E-value=0.68 Score=39.62 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=72.4
Q ss_pred CCChhhHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHH
Q 011643 197 IPDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271 (480)
Q Consensus 197 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (480)
..|..+|...+..+.. .+.++-....++.|.+-|++.|..+|+.|++.+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3466777777776643 35566677777888888888888888888877654321 11111
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHH
Q 011643 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF-KNVYRVLKDM 331 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 331 (480)
.-..++ .| -.+-+-+++++++|...|+.||..+-..+++++.+.+.. .+..++.--|
T Consensus 128 fQ~~F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 128 FQKVFL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 111111 11 123345778888888888888888888888888876653 3333443333
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.75 E-value=0.72 Score=34.41 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=54.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCCh
Q 011643 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA---FNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~ 182 (480)
+++..|+.+.|++.|.+....-|.....|+.-..++--+|+.++|++=+++..+..-+.+... |..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456667777777777777766666666777777777777777777777776665432222222 22223345556666
Q ss_pred hhHHHHHHHhhc
Q 011643 183 RKAQEIFDCMKD 194 (480)
Q Consensus 183 ~~a~~~~~~~~~ 194 (480)
+.|..-|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 666666665543
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.54 E-value=2.3 Score=37.94 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---CH
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQ---NL 166 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~ 166 (480)
..+|..+..+..+.|.+.+++..--.- .+... .--+.|..+.+++-+..++.+++.+-..-... |..| ..
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 346667777788888877765532221 11111 22345666667777777777777766554432 2112 12
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc----CCCC--ChhhHHHHHHHHhcCCChhHHHHHHHHHHH----cCCCCCh-
Q 011643 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD----RFIP--DSKTYSILLEGWGKDPNLPRAREIFREMVD----TGCNPDI- 235 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~~- 235 (480)
.....+..++...+.++++++.|+.... ...| ...+|-.|...|.+..|+++|.-+..+..+ .++. |.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chh
Confidence 3344566677777888999988888755 1111 235788888889999999988877666542 2222 21
Q ss_pred hhHH-----HHHHHHHhcCCHHHHHHHHHHhHh----CCCCc-CHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011643 236 VTYG-----IMVDVLCKAGRVDEALGIVKSMDS----TVCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 236 ~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
..|. .+.-++...|....|.+..++..+ .|-.+ -......+.+.|...|+.+.|+.-|++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1122 233355667777777777666533 33222 23344567788888999998888777653
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=5.8 Score=39.72 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=76.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (480)
.+.+-+.|++++|...|-+... ..++ ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~--~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIG--FLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcc--cCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3344566777777776655432 2111 13455555556666666777777777643 3344456777777777777
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 011643 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
+-.++.+....+.. ..-....+..+.+.+-.++|..+-.+... ....... .+-..+++++|++.+..+.
T Consensus 449 kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 76666655443110 11133444555555555555544433322 2222222 2345677788877777553
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.40 E-value=4.5 Score=38.02 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
..+-..+..++.+.|+.++|.+.++++.+..+. +..+...|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333444566666777777777777777663333 334566677777777777777777776543
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.37 E-value=1.6 Score=32.74 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=80.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhCCChhH
Q 011643 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---CNIILNGLIGRGETDE 358 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~ 358 (480)
-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-. ..|... ...++.+|+..|
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN---- 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc----
Confidence 457778888888877764 3566677777555555555555555554433 233322 223344444433
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.+.......+..+...|.-+.-.++++.+.+. -.+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 23344556677788888888888888888753 3467888888888999999999999999888887
Q ss_pred CCC
Q 011643 439 GIR 441 (480)
Q Consensus 439 ~~~ 441 (480)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.15 E-value=3.9 Score=36.36 Aligned_cols=127 Identities=9% Similarity=0.207 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCCh-
Q 011643 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCK--A----NKFKNVYRVLKDMNSKGV---APNSRTCNIILNGLIGRGET- 356 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~- 356 (480)
++...+++.+.+.|+.-+..+|-+....... . ....++..+++.|.+..+ .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445667777777777666555553332222 1 124566777777776533 2233344444332 22222
Q ss_pred ---hHHHHHHHHHHh-cCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011643 357 ---DEAYRVFRRMIK-LCEADA--DTYTMMIKMFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 357 ---~~a~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l 415 (480)
+.++.+++.+.+ +...+. .....++........ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 334455555555 333222 122222222211111 33555666666666666555555444
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.12 E-value=1.9 Score=38.43 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=58.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCChhhHH-
Q 011643 275 VLVHTYGVENRIEDAVDTFLEMEKNG-----ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAPNSRTCN- 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~- 344 (480)
.+..++...+.++++++.|+...+-- ......++-.+...|.+..++++|.-+..+..+. ++.--..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555555566665555543211 1112334555555566666666555544443221 1111111111
Q ss_pred ----HHHHHHHhCCChhHHHHHHHHHHh--cCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 345 ----IILNGLIGRGETDEAYRVFRRMIK--LCEADAD----TYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 345 ----~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
.+.-++...|.+-.|.+..++..+ ...-|.. ....+.+.|-..|+.+.|+.-|+.+
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122344555666666666655544 1122222 2344555666666666666655543
No 275
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.93 E-value=0.33 Score=33.88 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011643 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.=++.+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 33555666666667777888888888888888888888888888776544334445555443
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=3.4 Score=34.79 Aligned_cols=209 Identities=11% Similarity=0.111 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.-...|..-..+|...+++++|...+.+..+-...+.. .+-..+.++.|.-+.+++.+. +.-+..|+-...
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs-------lfhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS-------LFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34556777777888888888888877776532111111 112223345555555555542 222344555666
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcC
Q 011643 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---G--CNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~l~~~~~~~g 249 (480)
.|..+|.++.|-..+++.-+ ....-++++|+++|.+.... + ...-...+...-+.+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777777766665543 11233445555555554311 0 0111223344445555666
Q ss_pred CHHHHHHHHHHhHhC-----CCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCH
Q 011643 250 RVDEALGIVKSMDST-----VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 321 (480)
.+++|-..+.+-... .....-..|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666555444332111 001111223444444555556666666666643321 112344555555544 34555
Q ss_pred hHHHHHH
Q 011643 322 KNVYRVL 328 (480)
Q Consensus 322 ~~a~~~~ 328 (480)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 5554443
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.79 E-value=4.6 Score=35.92 Aligned_cols=128 Identities=14% Similarity=0.275 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--cC----ChhhHHHHHHHhhcCC----CCChhhHHHHHHHHhcCCC-
Q 011643 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--SK----NVRKAQEIFDCMKDRF----IPDSKTYSILLEGWGKDPN- 215 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~- 215 (480)
+++.+.+++.|.+.|...+..+|-+....... .. ...+|..+|+.|++.. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556777888888888777666554333332 11 2556777888887622 2333444444333 2222
Q ss_pred ---hhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHhHhCCCCcCHHHHHHH
Q 011643 216 ---LPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGR--VDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 216 ---~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
.+.++.+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345566666666666554432 22222222111111 33556666666666666555555443
No 278
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.79 E-value=0.32 Score=34.35 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011643 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 555666677777788888888888888888888888888888887754444446665554
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.69 E-value=3.2 Score=33.72 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCH----
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNL---- 166 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~---- 166 (480)
...+..+.+.|.+.|+.+.|.+.|.++..... .-...+-.+|+.....+++..+...+.+.... |.+.+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677788888888888888888888877654 34556677888888888888888877666442 211111
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011643 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
.+|..+ .+...+++..|-+.|-....
T Consensus 116 k~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 122222 22345777777777766554
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.60 E-value=0.13 Score=28.82 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 011643 412 FSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555554
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.49 E-value=0.69 Score=32.39 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 011643 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.-++.+-++.+...+..|++....+.+++|.+.+++..|.++|+.+...+..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3345555666666666777777777777777777777777777766643333444454443
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=2.3 Score=37.21 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011643 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 412 (480)
.....+...++..-....+++.+...+-++... ..++... ...++.+.+ -++++++.++..=+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 334444455555444455566666555555431 1111111 112222222 2555666666665666666666666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+.++..+.+.+++.+|..+.-.|+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666655553
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.34 E-value=0.13 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=15.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 365 RMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
+.++..|.++..|..+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444555555555555555555555543
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.31 E-value=3 Score=32.22 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=22.2
Q ss_pred cCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011643 318 ANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.++.+++..++..|.-..+. +...++...+ +...|++++|.++|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 45555555555555443111 1122222222 3455555555555555554
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.06 E-value=0.14 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH
Q 011643 128 MLNVETFCIIMRKYARVQKVEEA 150 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a 150 (480)
|.+...|..+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33333444444444444443333
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.88 E-value=4 Score=32.44 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=52.1
Q ss_pred cCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHH-HHH--HHHHHhhccCCHH
Q 011643 212 KDPNLPRAREIFREMVDTGCNPDIV-TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-IYS--VLVHTYGVENRIE 287 (480)
Q Consensus 212 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~g~~~ 287 (480)
+.+..++|+.-|..+.+.|..--.. ............|+...|...|+++-.....|-.. -.. --...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555555555555544321110 11111223344555555555555554432222211 000 0112234455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
+.....+-+...+-+-....-.+|.-+-.+.|++..|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555544444333333333334444444555555555555555544
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.67 E-value=2.3 Score=30.28 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011643 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
+..+-++.+......|++....+.+.+|.+.+++..|.++|+.+...+......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455566666666777777777777777777777877777777776643333335554443
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.67 E-value=2.6 Score=34.20 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
.+..+...|.+.|+.+.|.+.+.++.+....|. ...+..++......|++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555555555555555555544332222 2233444444445555555555444443
No 289
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.61 E-value=9.2 Score=36.00 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=72.2
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHH-HcCCCCCHH
Q 011643 370 CEADADTY-TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC--DKGIVSDSCVLLEDMI-EKGIRPSGE 445 (480)
Q Consensus 370 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~-~~~~~p~~~ 445 (480)
..++..++ +.+++.+.+.|...+|.+++..+... ++|+...|..++..-. ..-+...+..+++.|. ..| .|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 34444443 56788888999999999999999876 3568888888875421 2233788899999998 446 6788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
.|...+..-...|..+.+-.++-+..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 88887777778888877777655443
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.60 E-value=3.9 Score=35.59 Aligned_cols=113 Identities=8% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK--IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.|+++|+........-.|..+-..++..... ........++.+-+... +.++..+...++..+++.+++.+-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 4566665332212222455555555555443 11233333344444333 2266666666666666666666666666
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 011643 155 NVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 191 (480)
+..... +...|...|..+|......|+..-...+.++
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 655443 4445666666666666666666666555554
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.55 E-value=0.34 Score=27.05 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|..|...|.+.|++++|.+++++...+...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 556677777777777777777776554433
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.52 E-value=13 Score=37.40 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=49.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CC----CCHHHHHHHHHH--HHhCCChHHHHHHHH--------HHHHcCCCCCHHHHH
Q 011643 385 CQGGELEKAFKVWKYMKLKR--FI----PSMHTFSVLING--LCDKGIVSDSCVLLE--------DMIEKGIRPSGETFG 448 (480)
Q Consensus 385 ~~~g~~~~A~~~~~~~~~~~--~~----p~~~~~~~l~~~--~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~~ 448 (480)
+-.+++..|...+..+.... .+ .....+..++.| +...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 34688989999998887531 11 112233333333 445699999999997 444555555555554
Q ss_pred HHH--HHHHhcCC--HHH--HHHHHHHHHh
Q 011643 449 KLR--KLLIKEGR--EDV--LKFLQEKMNL 472 (480)
Q Consensus 449 ~l~--~~~~~~g~--~~~--a~~~~~~~~~ 472 (480)
.+= -.+...+. .++ +.++++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 432 22222222 222 5666665544
No 293
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=12 Score=37.13 Aligned_cols=304 Identities=9% Similarity=0.057 Sum_probs=158.5
Q ss_pred hcCCCCCHHHHHH-----HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCh--hHHHHHHHHHHHcCC
Q 011643 159 KYGVTQNLAAFNG-----LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL--PRAREIFREMVDTGC 231 (480)
Q Consensus 159 ~~~~~~~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~ 231 (480)
..|++.+..-|.. ++.-+...+.+..|.++-..+.........+|.....-+.+..+. +++.+.+++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3466666655543 445556667777777777766543222245566666666655322 223333333222212
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC----cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-------
Q 011643 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR----PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG------- 300 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------- 300 (480)
.....|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+.+.-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34456677776667778877777776633222110 011123334444455566555555554443320
Q ss_pred ----CCCCHHHHHHHHH--------HHHHcCCHhHHHHHH--HHHHhC-CCCCChhhHHHHHHHHHhCCChhHH------
Q 011643 301 ----ILADVAMYNALIG--------AFCKANKFKNVYRVL--KDMNSK-GVAPNSRTCNIILNGLIGRGETDEA------ 359 (480)
Q Consensus 301 ----~~~~~~~~~~li~--------~~~~~~~~~~a~~~~--~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a------ 359 (480)
.+.....|.-+++ .+.+.++-..+...| +..... -+.+-..........+.+.....-.
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1111112221111 011111111111111 110000 0111112233334444443331111
Q ss_pred ----HHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 360 ----YRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 360 ----~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
+++.+.+.. +..-..-+.+.-+..+...|+..+|.++-.+++- ||-..|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222222 2223334556667777888999999998777653 788999999999999999988877766
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
... .+.-|.-...+|.+.|+.++|.+++-+...+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 543 2455677889999999999999998876554
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.35 E-value=7 Score=33.99 Aligned_cols=58 Identities=7% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011643 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
++...+.|..+|.+.+|.++.+..+... +.+...+-.++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4555667778888888888888777653 346667777888888888866666666655
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.99 E-value=0.0062 Score=47.70 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
+..+.+.+.+..+..+++.+...+. .+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444555555555555554443 445555555555555554444444443
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.82 E-value=5.6 Score=31.73 Aligned_cols=99 Identities=15% Similarity=0.276 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHh
Q 011643 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG--ETDEAYRVFRRMIK 368 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 368 (480)
+.++.+.+.+++|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.... -..-|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4455555666677777777777777777765433 33334444455544443332222211 02222333333221
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
.+..+++.+...|++-+|.++.+..
T Consensus 91 -------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 -------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3444555666666666666666554
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=5.9 Score=31.51 Aligned_cols=132 Identities=9% Similarity=0.038 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHH--
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA-AFNG-- 171 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-- 171 (480)
...|..-+. +++.+..++|+.-|..+...|..+-..+. .......+.|+...|+..|+++-.....|-.. -..-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 33445555555555555555442222221 12223344555556666665554432222111 0000
Q ss_pred HHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 172 LLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
-.-.+...|.++......+-+.. +.+--...-..|.-+-.+.|++..|.+.|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11123445555555555554443 22222233344444555566666666666655543
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.43 E-value=3.4 Score=38.41 Aligned_cols=120 Identities=9% Similarity=0.003 Sum_probs=70.7
Q ss_pred HHcCCHhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 316 CKANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
...|+.-.|.+-+....+ ..-.|+..... .......|+++.+...+....+.......+..++++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345666665544444333 22233333322 333456677777777777666655555666777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
..-..|....+. +..........-...|-++++...|++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 777777766555 4444443333334456677777777777644
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.36 E-value=0.77 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
|..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444555555555544443
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.03 E-value=8 Score=32.07 Aligned_cols=65 Identities=3% Similarity=-0.121 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
-+.+||.+.-.+...|+++.|.+.|+...+.++....++..-.-++---|++.-|.+-+...-..
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 45566666666666677777777777666666533333222222233445666666555544443
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.80 E-value=0.72 Score=25.12 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
|..+..+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.59 E-value=0.95 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+|..+..++...|++++|...+++..++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788889999999999999999999998764
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.50 E-value=7.7 Score=30.95 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC
Q 011643 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 231 (480)
+++..+.+.+++|+...+..++..+.+.|++....+++.- +.-+|.......+-.+. +....+.++=-+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3445555666777777777777777777765554444332 22333333322222211 2233344443344321
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011643 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445556666677777777766654
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.29 E-value=7.6 Score=30.58 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=29.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.++.+++..+++.++-..|...+.-..-...+...|++.+|+.+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45566666666666666655533333233333455666666666666666543
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.27 E-value=22 Score=35.74 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH--
Q 011643 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCK-- 317 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 317 (480)
....+.-.|.++.|.+.+-. ..+...+..++...+..|.-.+-.+... ..+.... -.|..--+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456678999999988876 2223455666666555554333222221 2221110 01112457778888876
Q ss_pred -cCCHhHHHHHHHHHHhC
Q 011643 318 -ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 318 -~~~~~~a~~~~~~~~~~ 334 (480)
..+..+|.+.+--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45677788877766554
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=3 Score=36.50 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=66.8
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC---CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011643 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
.|......+...++..-....+++.+..++-.+.... ..|+...+ ++++.+. .-+.++++.++..=++.|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 4555556666666665555677788877777775431 11221111 2222222 23566777777777778888888
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011643 306 AMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+++.+|+.+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888877776654
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.42 E-value=46 Score=38.27 Aligned_cols=62 Identities=15% Similarity=-0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011643 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
..+|....+.....|.++.|...+-.+.+.+ -+..+...++.+...|+...|..++++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3556666666666677777766665555543 2333444556666677777776666665543
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.13 E-value=28 Score=35.51 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=42.0
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCcCHH-------HHHHHH-HHhhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011643 246 CKAGRVDEALGIVKSMDSTVCRPTSF-------IYSVLV-HTYGVENRIEDAVDTFLEMEKN----GILADVAMYNALIG 313 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 313 (480)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556666666666654432121111 122221 1223456666666665554432 12223344445555
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 011643 314 AFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~ 333 (480)
+..-.|++++|..+..+..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 55556666666666655444
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.06 E-value=21 Score=33.90 Aligned_cols=63 Identities=6% Similarity=0.010 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011643 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
|.....+++..+...-.+.-++-+..+|...| .+...|..++.+|... ..++-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33344444444444444444444444444432 2334444444444444 334444444444443
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.00 E-value=4.9 Score=32.96 Aligned_cols=70 Identities=6% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 011643 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++-+..+ +..+|+..+..|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333333 4455555555555554 1244555555555555555555544
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.96 E-value=9.2 Score=29.64 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=27.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011643 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..++++++..+++.|+-..|...+.-..-...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666666555422222222233345566666666666666554
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.93 E-value=11 Score=30.67 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=53.1
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 011643 348 NGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (480)
..+...+++++|+..++........ ...+--.|.+.....|.+++|...++.....+.. ......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 4456667777777777665531110 1112233556666777777777777766554322 2223334556777788
Q ss_pred hHHHHHHHHHHHHcC
Q 011643 425 VSDSCVLLEDMIEKG 439 (480)
Q Consensus 425 ~~~a~~~~~~~~~~~ 439 (480)
-++|..-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888887777654
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.70 E-value=2.9 Score=37.07 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=24.0
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
|.+.|.+++|++++.......+.|+.++..-..+|.+...+..|+.-...+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 444455555555554444433444444444445555544444444433333
No 314
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.68 E-value=22 Score=33.70 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=35.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 274 SVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
..+..++.+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555556667777777777776543211 1333555666677777777777777666543
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.58 E-value=3 Score=34.50 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011643 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
+..++.+.+.+++++++...+.-.+.+|.+..+-..+++.++-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555555555444443
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.46 E-value=8.2 Score=31.57 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011643 348 NGLIGRGETDEAYRVFRRMIKLCEADA-----DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
.-+.+.|++++|..-|..++..+++.. ..|..-.-++.+.+.++.|+.-..+.++.+.. .......-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 447889999999999999999777654 34555567788899999999998888887632 334444445678888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH
Q 011643 423 GIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 423 g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
..+++|+.=|+++++.. |...
T Consensus 182 ek~eealeDyKki~E~d--Ps~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD--PSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhC--cchH
Confidence 99999999999998853 5444
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.21 E-value=1.5 Score=23.72 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
..|..+...+...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777777778888888877777664
No 318
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=17 Score=31.69 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCchhHHHHHhhCC
Q 011643 35 AKSISKIMLSSPKVVLDTALDQSG 58 (480)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~ 58 (480)
+..+.+.+......++.+.|...|
T Consensus 45 ~e~l~~~i~d~~maplYkyL~E~~ 68 (412)
T COG5187 45 LEHLERLIIDKCMAPLYKYLAEKG 68 (412)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcc
Confidence 344444444444445555555544
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.97 E-value=8.6 Score=31.58 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc----CCCCChhhHHHHHHHHhcCCChhHHH
Q 011643 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD----RFIPDSKTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (480)
.-+.|.+.|-.+...+.-.++.....|...|. ..+.+++..++.+..+ +..+|+..+..|++.+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34566777767666665455555555554444 5677777777777655 22566777778888887777777764
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.68 E-value=18 Score=31.61 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
..++..+...++..++..+++.+-.+++..-... +..-|...|..++......|+..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4455555666666666666666666666655433 333455566666666666666544444433
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.67 E-value=26 Score=33.33 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=124.6
Q ss_pred CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHH
Q 011643 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274 (480)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (480)
..+.|....-+++..+..+..+.-...+..+|..-| .+...|..++.+|... ..++-..+++++.+..+ .+...-.
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHH
Confidence 345577778889999999999999999999999865 4677888999999888 66888899998887753 2444444
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCChhhHHHHHH
Q 011643 275 VLVHTYGVENRIEDAVDTFLEMEKNGILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILN 348 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~ 348 (480)
.|+..|.+ ++...+...|.++..+=++.. ...|.-+.... ..+.+....+..++... |...-...+..+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 55555555 888888888888765422211 12333333211 34566666666666553 33333445555556
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011643 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
-|....++.+|++++..+.+....|..+-..++..+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 6777888888888888888866667666666666553
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=11 Score=36.36 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=59.0
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011643 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (480)
.+.|+.+.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHH
Confidence 45666776666655433 445577777777777777777777766543 5556666666666665555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 011643 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
+-....+.|.. |....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 55555554422 2233345566777777666544
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.57 E-value=15 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH
Q 011643 342 TCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
||-.+...+...|+.++|..+|+-.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHH
Confidence 3333444444444444444444433
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.27 E-value=1.8 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 410 HTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666666655
No 325
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.22 E-value=3.4 Score=30.68 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011643 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
..+-++.+...++.|++.+....++++.+.+|+..|.++|+-++.+..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3445555666677777777777777877788888888888777765444444454443
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.99 E-value=7.9 Score=31.10 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred cCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 369 LCEADADTYTMMIKMFCQGG----E-------LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
..|....++..+..+|...+ + +++|...|++.... .|+..+|+.-+... ++|-++..+..+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHH
Confidence 34444566666666665432 1 33344444444433 36666666555444 235555555544
Q ss_pred cC
Q 011643 438 KG 439 (480)
Q Consensus 438 ~~ 439 (480)
.+
T Consensus 136 ~~ 137 (186)
T PF06552_consen 136 QG 137 (186)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=15 Score=35.58 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=99.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHH
Q 011643 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 187 (480)
.-.|+++.|..++..+. .+..+.++.-+.++|..++|+++ .+|+.. -.....+.|+++.|.+
T Consensus 597 vmrrd~~~a~~vLp~I~------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhhccccccccccccCc------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHH
Confidence 34577777776554443 33455666777777877777655 233221 1233456788888888
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 011643 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
+..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.| .
T Consensus 659 la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 659 LAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 776654 566788899988899999888888877653 4556666777777776666666666665 3
Q ss_pred cCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011643 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.|.. ..+|...|+++++.+++..-.
T Consensus 724 ~N~A-----F~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 724 NNLA-----FLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred cchH-----HHHHHHcCCHHHHHHHHHhcC
Confidence 3332 234556788888888776543
No 328
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=18 Score=30.54 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHh---cCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HH-HHHHhC-
Q 011643 354 GETDEAYRVFRRMIK---LCEADAD---TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV---LI-NGLCDK- 422 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~-~~~~~~- 422 (480)
.+++.|+..++..-+ +...+.. .+--....-...+++.+|+++|+++....+..+.--|.. ++ .++|+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455666666666554 2222222 222333344556788888888888776544433333321 11 122222
Q ss_pred -CChHHHHHHHHHHHHcCCCCCH
Q 011643 423 -GIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 423 -g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
.+.-.+...+++..+ ..|+.
T Consensus 208 ~~D~v~a~~ALeky~~--~dP~F 228 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDPAF 228 (288)
T ss_pred cccHHHHHHHHHHHHh--cCCcc
Confidence 444455555555554 34543
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.59 E-value=1.9 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011643 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+++.+...|...|++++|..++++.......
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 357888999999999999999999999876543
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=19 Score=30.44 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=69.0
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011643 315 FCKANKFKNVYRVLKDMNSKGVAPNS-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
|.....++.|...|.+.+.. .|+. .-|..=+.++.+..+++.+..--++..+..+..+..-..+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 44455677777766666654 4444 23444455566677777777666666654444444555566666777777888
Q ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011643 394 FKVWKYMKL----KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 394 ~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
+..+++... ..++|-...+..|..+--..=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 877777632 334444455555555544333444555554443
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.82 E-value=0.38 Score=37.51 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011643 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 190 (480)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555566667777777777665545556667777777777766666666555
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.23 E-value=8 Score=32.13 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh---cCCCCHHHHHHHHHH
Q 011643 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKM 383 (480)
Q Consensus 309 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~ 383 (480)
+..++.+.+.+...+++...++-++..+. |...-..+++.++-.|++++|..-++.... ...+-..+|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455566666667776666665554222 444555566666777777777666555444 333444555555544
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.18 E-value=2.9 Score=22.55 Aligned_cols=30 Identities=20% Similarity=0.042 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+|..+...+...|++++|.+.+++..++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555566666666666666555544
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.93 E-value=31 Score=31.62 Aligned_cols=65 Identities=3% Similarity=-0.025 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
...++..++..+.+.|.++.|...+..+...+... .+.....-.+..-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777888888888888887777643111 233333344555667777788777777766
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=23 Score=29.92 Aligned_cols=59 Identities=5% Similarity=-0.016 Sum_probs=32.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh-cCCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 346 ILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTM------MIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
+...-...+++.+|.++|+++.. ....+..-|.. -.-++....+.-.+...+++..+..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 33444567889999999999877 22222222221 1112222355555666666666544
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.64 E-value=44 Score=33.11 Aligned_cols=246 Identities=13% Similarity=0.079 Sum_probs=127.4
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHH--HHH-HhcCCChhHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC--
Q 011643 182 VRKAQEIFDCMKDRFIPDSKTYSIL--LEG-WGKDPNLPRAREIFREMVD-------TGCNPDIVTYGIMVDVLCKAG-- 249 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g-- 249 (480)
...|.+.++................ ..+ +....+++.|..+|....+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3456667766655221111111111 122 4456788888888888766 44 3334556666666643
Q ss_pred ---CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCH
Q 011643 250 ---RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC----KANKF 321 (480)
Q Consensus 250 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~ 321 (480)
+.+.|..++...-..| .|+.......+..... ..+...|.++|...-+.|.. ..+-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 5677888888888777 4555544444433333 34677888888888887743 22222222222 12367
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH----HHHh----cCCHHHH
Q 011643 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK----MFCQ----GGELEKA 393 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~----~~~~----~g~~~~A 393 (480)
..|..++.+..+.|. |....-...+..+.. ++.+.+.-.+..+.........+-...+. .... ..+.+.+
T Consensus 381 ~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 888888888888763 222222222333333 66666655555554411111111111111 0111 1245556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHcC
Q 011643 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDK----GIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 439 (480)
...+......| +......+...|... .+.+.|...+......+
T Consensus 459 ~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 459 FSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 66666655554 444444444444332 23556666666655544
No 337
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.59 E-value=31 Score=31.31 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHH
Q 011643 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KGIVSDSCVLLEDM 435 (480)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 435 (480)
-+.+++++.+..+.+...+..++..+.+..+.++..+-|+++...... +...|...+..... .-.++....+|.+.
T Consensus 50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 344555555544555555555555555555555555555555554321 44555555543332 12334444444333
Q ss_pred HHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011643 436 IEK------GI------RPS-----GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 436 ~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+.. +. .++ ..++..+...+..+|..+.|..+++.+.++..
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 211 10 000 11223333444567777777777777766544
No 338
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.30 E-value=47 Score=33.10 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011643 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
+...++.-|+ .+..+.-.|.+++|.+++...
T Consensus 144 p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 144 PYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred CCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 3344577787 577777889999999999543
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.29 E-value=53 Score=33.72 Aligned_cols=224 Identities=11% Similarity=0.110 Sum_probs=115.6
Q ss_pred HHccCChhhHHHHHHHhhcCCCC-Ch-------hhHHHHH-HHHhcCCChhHHHHHHHHHHHc----CCCCChhhHHHHH
Q 011643 176 LCKSKNVRKAQEIFDCMKDRFIP-DS-------KTYSILL-EGWGKDPNLPRAREIFREMVDT----GCNPDIVTYGIMV 242 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~-~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~ 242 (480)
.....++.+|..+..++....++ +. ..++.+- ......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887662222 11 1233332 2334578888888887776543 2334556667777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHH-----HHhhccCCH--HHHHHHHHHHHHC-----CC-CCCHHHHH
Q 011643 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV-----HTYGVENRI--EDAVDTFLEMEKN-----GI-LADVAMYN 309 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~a~~~~~~~~~~-----~~-~~~~~~~~ 309 (480)
.+..-.|++++|..+..+..+..-.-+...+.... ..+...|+. .+....|...... +. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999988888776543233333333222 334555632 2223333332211 00 01123344
Q ss_pred HHHHHHHHc-CCHhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhc---C--CCCHHHHHHHH
Q 011643 310 ALIGAFCKA-NKFKNVYRVLKDMNSKGVAPNSRT--CNIILNGLIGRGETDEAYRVFRRMIKL---C--EADADTYTMMI 381 (480)
Q Consensus 310 ~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~l~ 381 (480)
.+..++.+. +...++..-+.-.......|-... +..++......|+.++|...++++... . .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444455441 112222222222222222222222 235677778889999999888888771 1 22222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 011643 382 KM--FCQGGELEKAFKVWKY 399 (480)
Q Consensus 382 ~~--~~~~g~~~~A~~~~~~ 399 (480)
.. -...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2346777777666555
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.92 E-value=4.2 Score=36.09 Aligned_cols=93 Identities=11% Similarity=-0.025 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011643 381 IKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|.+.|.+++|+..|...+... | |.+++..-..+|.+..++..|..-...++..+ +.-...|..-..+=...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999887654 4 88888888899999999988887777766532 1111223333333344567
Q ss_pred HHHHHHHHHHHHhccCC
Q 011643 460 EDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 460 ~~~a~~~~~~~~~l~~~ 476 (480)
..+|.+=++....|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 77787777777776654
No 341
>PRK09687 putative lyase; Provisional
Probab=83.86 E-value=30 Score=30.61 Aligned_cols=218 Identities=10% Similarity=-0.014 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCCHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----EEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
++..+....+..+...|..+ +...+..+... .+...-...+.++++.|+. .++...+..+... .++..+-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 35555555555565555432 22223233222 2444455555666666653 3455555554322 34555544
Q ss_pred HHHHHHHccCCh-----hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011643 171 GLLSALCKSKNV-----RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 171 ~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 245 (480)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 445454443321 112222222211 2244444455555555554 3455555555442 2333333333344
Q ss_pred HhcC-CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011643 246 CKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 246 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
.+.+ ....+...+..+.. .++..+-...+.++++.|+. .+...+-...+.+ + .....+.++...|.. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 4332 12334444444442 33445555555566665553 3444444433332 1 123444555555553 45
Q ss_pred HHHHHHHHh
Q 011643 325 YRVLKDMNS 333 (480)
Q Consensus 325 ~~~~~~~~~ 333 (480)
...+..+.+
T Consensus 254 ~p~L~~l~~ 262 (280)
T PRK09687 254 LPVLDTLLY 262 (280)
T ss_pred HHHHHHHHh
Confidence 555555554
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.57 E-value=8.6 Score=28.67 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHH
Q 011643 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
+..+.++.+..-++.|++......+++|.+.+|+..|.++|+.+.....+....|-.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 344555566666677777777777777777788888877777776544444344443
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=27 Score=30.45 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh----HhCCCCcCH
Q 011643 239 GIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTS 270 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~ 270 (480)
..++..+.+.|.+.+|+.+...+ .+.+-+|+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 45678888999999998866544 444444443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.46 E-value=4.5 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 377 YTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554443
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.21 E-value=3.6 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=10.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 011643 415 LINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+..+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.15 E-value=27 Score=28.75 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=71.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 011643 313 GAFCKANKFKNVYRVLKDMNSKGVAPNS----RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (480)
.-+.+.|++++|..-|.+.++.-+.... ..|..-..++.+.+.++.|+.-....++..+........-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4578899999999999999986322221 234444556788899999998888888766666666666678899999
Q ss_pred CHHHHHHHHHHHHhCC
Q 011643 389 ELEKAFKVWKYMKLKR 404 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~ 404 (480)
.+++|+.-|+.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999876
No 347
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.86 E-value=40 Score=30.59 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011643 95 HSVRAYHSMIESLAKIRQ------------YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 162 (480)
.|+.+|-.++..--..-. .+.-+.++++..+.++.+...+...+..+.+..+.++..+-++.+....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 477777777654432211 2334455555555555555666666666666666666666666665543
Q ss_pred CCCHHHHHHHHHHH
Q 011643 163 TQNLAAFNGLLSAL 176 (480)
Q Consensus 163 ~~~~~~~~~ll~~~ 176 (480)
+-+...|...+...
T Consensus 96 ~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 96 PGSPELWREYLDFR 109 (321)
T ss_pred CCChHHHHHHHHHH
Confidence 33455555555443
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.76 E-value=4.5 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011643 379 MMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677777777777777777777543
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.43 E-value=64 Score=32.00 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHh
Q 011643 114 QIMWDLVNAMRTKRMLNVETFCIIMRK---YARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~ 159 (480)
..|.++++.....+..........+-. +....+.+.|+.+|+...+
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 455666665555543222222222221 2234456666666655544
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.51 E-value=33 Score=28.13 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011643 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS-----VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
.+...+...|++++|...++..... |....+. .+.+.....|.+++|+..+....+.+.. ......-.+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 3567788999999999999987754 2333333 3456778899999999999877654432 3333444678
Q ss_pred HHhcCCHHHHHHHHHHHHhccC
Q 011643 454 LIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+...|+.++|+.-+++..+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccC
Confidence 9999999999999998877643
No 351
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.43 E-value=15 Score=25.43 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011643 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 185 (480)
+.++++.+.++++.+......+-.+-...|+.+.|.+++..+. .| | ..|...+.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 3455555556665555544444444445566666666666665 43 2 2345555555555554433
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.27 E-value=13 Score=35.88 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=25.4
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011643 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
...+.+.|-...|..++.+...-....+.++..+.+++....+++.|++.|++..+.
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 333344444444444444443322223344444444555555555555555544443
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.85 E-value=32 Score=29.97 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 011643 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK---- 317 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 317 (480)
|.++...+++.+++...-+.-+..-+........-|-.|.+.+++..+.++-.......-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666655444433222233344444455566666666666666665543222233345555555443
Q ss_pred -cCCHhHHHHHH
Q 011643 318 -ANKFKNVYRVL 328 (480)
Q Consensus 318 -~~~~~~a~~~~ 328 (480)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.53 E-value=3 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 011643 136 IIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~ 154 (480)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444555555554444
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.36 E-value=39 Score=29.51 Aligned_cols=90 Identities=6% Similarity=-0.021 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHh---
Q 011643 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY--- 280 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 280 (480)
..=|++++..++|.+++...-+.-+.--+........-|-.|.+.|.+..+.++-....+..-.-+..-|..+++.|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34578899999999988877766543222223344455556889999999999888877643333344477766655
Q ss_pred --hccCCHHHHHHHH
Q 011643 281 --GVENRIEDAVDTF 293 (480)
Q Consensus 281 --~~~g~~~~a~~~~ 293 (480)
.-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 4579999998877
No 356
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.83 E-value=64 Score=30.51 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=35.3
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhh--HHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCC
Q 011643 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGR 250 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~ 250 (480)
..+..|+.+-+..+++. +..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 8 ~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 8 DAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 33455666655555542 33333221 223334444555543 344445555544322 11223444556666
Q ss_pred HHHHHHHHH
Q 011643 251 VDEALGIVK 259 (480)
Q Consensus 251 ~~~a~~~~~ 259 (480)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 665554443
No 357
>PRK09687 putative lyase; Provisional
Probab=77.71 E-value=50 Score=29.25 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011643 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
+..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~ 214 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAII 214 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 44444445555555554 2344444444432 33334444444444432 12344444444442 345555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011643 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
++.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.++.
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66666663 3444444444332 2 233556666666664 577777776653 246666665555554
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.56 E-value=5.6 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 011643 136 IIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.+..++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.48 E-value=9 Score=25.90 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 011643 448 GKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~ 466 (480)
..++.+++..|+++++.++
T Consensus 47 G~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.60 E-value=50 Score=28.61 Aligned_cols=207 Identities=10% Similarity=0.099 Sum_probs=125.9
Q ss_pred CCCCChhhHHHHHHHH-hcCCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHhHhC---C--
Q 011643 195 RFIPDSKTYSILLEGW-GKDPNLPRAREIFREMVDTGCNPDIV---TYGIMVDVLCKAGRVDEALGIVKSMDST---V-- 265 (480)
Q Consensus 195 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-- 265 (480)
+..||+..=|..-.+- .+...+++|+.-|.+..+...+.... ....++..+.+.|++++....+.++... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665544332221 34567899999999988654333333 3345778888999999999998887531 1
Q ss_pred CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--
Q 011643 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADV----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-- 338 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-- 338 (480)
..-+..+.+.+++......+.+-....|+.-.+. .-..+. .+-.-+...|...|.+.+...++.++......-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1224556677777777666666666655543221 000121 223456677788888888888888887641111
Q ss_pred ---------ChhhHHHHHHHHHhCCChhHHHHHHHHHHh--cCCCCHHHHHHHH----HHHHhcCCHHHHHH-HHHHHH
Q 011643 339 ---------NSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMI----KMFCQGGELEKAFK-VWKYMK 401 (480)
Q Consensus 339 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~~ 401 (480)
-...|..-+..|....+-.....++++... ...|.+.+...+- .+..+.|++++|-. +|+...
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 123566677778777777777788887765 4556665544332 22345678887764 344433
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.27 E-value=1e+02 Score=32.14 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=20.4
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011643 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|......+-+..+++.+....-.++....+.++..|..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34445555666666666544434455555555555543
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.20 E-value=1.6e+02 Score=34.33 Aligned_cols=150 Identities=8% Similarity=0.038 Sum_probs=94.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011643 103 MIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+-.+++.+..|...+++-..... .....+..+...|+..+++|...-+...-.. .|+ .+. -|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHhh
Confidence 34455678888999988888421111 2233344455588999999888777664111 222 233 34456778
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHH
Q 011643 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI-MVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 180 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~ 258 (480)
|++..|...|+.+.+..++....++-++......|.++.+.-..+-.... ..+....+++ =+.+--+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999998876777888888888877788887777655554432 1222222322 233345666776666655
Q ss_pred H
Q 011643 259 K 259 (480)
Q Consensus 259 ~ 259 (480)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.19 E-value=51 Score=28.54 Aligned_cols=152 Identities=12% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHHhcCCC
Q 011643 145 QKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 215 (480)
..+++|+.-|++..+...... ..+...++..+.+.|++++....+.++.. ...-+..+.|.+++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 466777777776665421222 23444556666777777777766666643 111234455666665555555
Q ss_pred hhHHHHHHHHHHHc-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhHhCCC----CcC-------HHHHHHHHHH
Q 011643 216 LPRAREIFREMVDT-GCNPDIV----TYGIMVDVLCKAGRVDEALGIVKSMDSTVC----RPT-------SFIYSVLVHT 279 (480)
Q Consensus 216 ~~~a~~~~~~m~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~~~ 279 (480)
.+-....|+.-++. .-..+.. |-..+...|...|.+.+..+++.++...-- ..| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555544433211 0001111 223455556666666666666666644310 111 1234444555
Q ss_pred hhccCCHHHHHHHHHHH
Q 011643 280 YGVENRIEDAVDTFLEM 296 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~ 296 (480)
|....+-.....+|++.
T Consensus 201 YT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQA 217 (440)
T ss_pred hhhhcccHHHHHHHHHH
Confidence 55555555555555554
No 364
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.13 E-value=73 Score=30.33 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=68.4
Q ss_pred HHhhccCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHh-------CCCCCCh--
Q 011643 278 HTYGVENRIEDAVDTFLEME---KNGILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNS-------KGVAPNS-- 340 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~p~~-- 340 (480)
..+.-.|++.+|.+++...- ..|...+ -..||.+...+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888776532 2221112 12235555555666666666666665543 4544422
Q ss_pred ---------hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011643 341 ---------RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 341 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.+||. .-.|...|++-.|.+.|.........++..|-.|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12332 2346778999999999999998888899999999998864
No 365
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.05 E-value=8.1 Score=20.40 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 011643 415 LINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555554
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.41 E-value=20 Score=29.55 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
|+..+|..++.++...|+.++|.+..+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666666666666554
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.23 E-value=21 Score=24.23 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
-++.| ...+.++|+..|....+.-..|. -.++..++.+|+..|++.+++++--
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 67788999999999987644433 2466778899999999999887644
No 368
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.86 E-value=43 Score=27.12 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011643 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ----K-------VEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
++|+.-|++....+|....++..+..++...+ + +++|.+.|+..... .|+...|+.-+...
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 44555555555556666667766666665543 2 34444444444443 56666776666554
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.58 E-value=1.1e+02 Score=30.98 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 011643 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
+|--|.++|++++|.++..............+...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34445556666666665544444444444455555555544
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.02 E-value=32 Score=24.66 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=20.0
Q ss_pred HhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 011643 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
+...|++++|..+.+.+ ..||...|..+-. .+.|-.++...-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 33444444444443333 2344444433322 23344444444444444433
No 371
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.95 E-value=80 Score=30.45 Aligned_cols=36 Identities=6% Similarity=0.116 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+...+..++......+....|+.+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 334444444444444444556666666666654443
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.44 E-value=90 Score=29.64 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhC
Q 011643 353 RGETDEAYRVFRRMIKLCEADAD----TYTMMIKMFCQGG----ELEKAFKVWKYMKLKRFIPSMHTFSVLING--LCDK 422 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~ 422 (480)
.|+.++|+.++-.+.. +.||.. -|..+++.+.... ..-...+.++..++.-+-.+...|..-..+ ....
T Consensus 711 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 711 EGRLDEALSVLISLKR-IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred cccHHHHHHHHHhhhc-cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 4788888887766543 456653 4666777765432 111222233333332222222333222222 2345
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 011643 423 GIVSDSCVLLEDMIEKGIRPSGET--FGKLRKLLIK 456 (480)
Q Consensus 423 g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~ 456 (480)
.++.+|+++++++.+-+-+..+.| ....+.++.+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 689999999999986543323333 4444555443
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.39 E-value=36 Score=24.69 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=38.5
Q ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011643 77 GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 77 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
+.+|..+.+|+....+ ....+--..+..+.+.|++++| +..-.....||...|..|- -.+.|-.+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 3478888888866643 1222222334456677777777 2221122124544444332 3466666666666666
Q ss_pred HHhcC
Q 011643 157 MQKYG 161 (480)
Q Consensus 157 ~~~~~ 161 (480)
+-..|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 65554
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.23 E-value=65 Score=27.50 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=79.2
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhCCC
Q 011643 278 HTYGVENRIEDAVDTFLEMEKNGILADV-AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN-IILNGLIGRGE 355 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~ 355 (480)
+.|.....++.|...|.+.+.. .|+. ..|+.=+..+.+..+++.+..--.+..+ +.|+..--. .+.........
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 3466667889999988877765 4555 4455566677888889888776666665 356654333 34455667788
Q ss_pred hhHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011643 356 TDEAYRVFRRMIK-----LCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 356 ~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
+++|+..+.+... ..++.......|..+=-..=.+.+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999998855 23344456666666555555556666666654
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.33 E-value=28 Score=28.74 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=35.4
Q ss_pred hCCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 352 GRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
...+.+......+.+.+ ...|++.+|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444444444 45678888888888888888888888888777764
No 376
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.04 E-value=1.3e+02 Score=30.57 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 181 (480)
++.+.+.+.+++|+...+.....-+ .........|..+...|++++|-...-.|.. .+..-|--.+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 5667778888888888776544333 2456677788888888888888877777763 344555555555555555
Q ss_pred hhhHHHHHHHhhcCCC-CChhhHHHHHHHHhc
Q 011643 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 212 (480)
.. .++.-++.+.+ .++..|..++..+..
T Consensus 439 l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 43 23333343222 355667777666655
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.95 E-value=40 Score=32.75 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=43.6
Q ss_pred cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHH
Q 011643 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 212 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
..|+...|.+.+............+....+.+...+.|....|..++.+..... ...+-++..+.+++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555554433222233334444555555555555555555554433 2233344455555555566666666
Q ss_pred HHHHHHHC
Q 011643 292 TFLEMEKN 299 (480)
Q Consensus 292 ~~~~~~~~ 299 (480)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66655544
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.58 E-value=78 Score=27.78 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 011643 378 TMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~ 398 (480)
.-++..+.+.|.+.+|..+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 346667777777777776544
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.53 E-value=38 Score=33.74 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=20.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHH
Q 011643 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
+...-..++..|.+.|-.+.+.++.+.+-..- ....-|...+..+.+.|+...+..+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444555555555555555555555443221 112233344444444444444433333
No 380
>PRK10941 hypothetical protein; Provisional
Probab=68.95 E-value=81 Score=27.72 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
.+-.+|.+.++++.|+++.+.+..-.|.++.-+..-.-.|.+.|.+..|..=++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34455666666666666666666655666666666666666666666666666666543
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.41 E-value=1.1e+02 Score=29.17 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=30.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011643 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 34567788888888888888753 56678888888887764
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.25 E-value=85 Score=27.71 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 011643 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETF 447 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 447 (480)
+++...+.|..+|.+.+|.++.+.....+. .+...|-.++..+...|+--.|.+.++++. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 445556777778888888888777776652 366677777777777787667766666654 34666555444
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.17 E-value=11 Score=18.95 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555556666665555554
No 384
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=98 Score=27.96 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=28.9
Q ss_pred HHHHHcCCHhHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhCCChhHHHHHHHHHHh
Q 011643 313 GAFCKANKFKNVYRVLKDMNSK---GVAPNSRTC--NIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
...-+.++.++|.+.++++.+. --.|+...| ..+.+++...|+..++.+.++...+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444455666666666666543 123333333 2334444556666666666655554
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.10 E-value=25 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=22.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011643 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777777666554
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.53 E-value=61 Score=26.33 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
.+-.|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 345566777777777777766652 3433334434334333
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.41 E-value=55 Score=24.79 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011643 115 IMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 115 ~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.+.++|..|..+++ ..+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443 333444444444444444444444443
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.29 E-value=41 Score=23.36 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 393 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+.+++....+.|+- +......+-.+-...|+.+.|.+++..+. .| +.-|...+.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 44556666666643 44444444333335577777777777776 43 334566677777776655544
No 389
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.09 E-value=1.9e+02 Score=30.84 Aligned_cols=324 Identities=7% Similarity=0.030 Sum_probs=162.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH----HHH---HHcC---CHHHHHHHHHHHHhcCCCCCHHHH
Q 011643 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM----RKY---ARVQ---KVEEAVYTFNVMQKYGVTQNLAAF 169 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li----~~~---~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 169 (480)
+-++=+++...+.++.|...|+++...-|.-.+.|.+.. ..+ ...| .+++|+.-|+.+... +.-+--|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 555 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEY 555 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHH
Confidence 444557778888899999999999877664444443332 222 2334 367777777777542 2223334
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChh----------------------hHHHHHHHHh---cCCChhHHHHHHH
Q 011643 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK----------------------TYSILLEGWG---KDPNLPRAREIFR 224 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~---~~~~~~~a~~~~~ 224 (480)
-.-.-+|-+.|++++-.+.+.-..++.+..+. +|.-++-+.- +.-...+-.++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 44444688888888877777666553322211 1111111111 1112223344444
Q ss_pred HHHHcCCCCChh--------h-----HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHH
Q 011643 225 EMVDTGCNPDIV--------T-----YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 225 ~m~~~~~~~~~~--------~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
.+..+ .+|... + +..++..+ .|..---.++++.... .++-.+...+..+.+..|.++-+.+
T Consensus 636 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (932)
T PRK13184 636 ILYHK-QQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQ 709 (932)
T ss_pred HHHhh-ccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHH
Confidence 44432 222222 1 11122111 2333344445555544 2344555556666688888887777
Q ss_pred HHHHHHHC----CCCCCH--------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChh
Q 011643 292 TFLEMEKN----GILADV--------AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETD 357 (480)
Q Consensus 292 ~~~~~~~~----~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~ 357 (480)
....+.+. ..+.+. ..|-.-+.++.....++++...+... .|. ...+..++.-+.-.++.+
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 784 (932)
T PRK13184 710 FSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGE 784 (932)
T ss_pred HHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccch
Confidence 66665532 111111 11222234444455566655533322 122 233444444445556666
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011643 358 EAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
....+.+.+.+...+. .......+.+|.-..++++|-++++.....-.. -....+-....-++-.++.+.|...|.
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (932)
T PRK13184 785 SIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFS 864 (932)
T ss_pred HHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHh
Confidence 6556655555522222 223455678888888999999998765433211 112222222222344566666666666
Q ss_pred HHH
Q 011643 434 DMI 436 (480)
Q Consensus 434 ~~~ 436 (480)
...
T Consensus 865 ~~~ 867 (932)
T PRK13184 865 GCR 867 (932)
T ss_pred hcc
Confidence 555
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.05 E-value=53 Score=24.88 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011643 62 SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 122 (480)
+...+..+--.+...-+.+.++|..+..+.-...-+..|......+...|++++|.++|+.
T Consensus 64 nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444555555566555589999999988776677889999999999999999999999975
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.94 E-value=17 Score=18.86 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHH
Q 011643 356 TDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
.+.|..+|+++....+.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444433344444443
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.89 E-value=1.2e+02 Score=28.33 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc---CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc---------CCCCC
Q 011643 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---------GCNPD 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------~~~~~ 234 (480)
..+.-+..-|..+|+++.|.+.|.+... ..+.....|-.+|..-...|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3566777888889999999999988655 22334455667777777788888777777766543 12233
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011643 235 IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
..++..+...+.+ ++..|.+.|-..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 3444444444333 666666555433
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.83 E-value=60 Score=26.36 Aligned_cols=23 Identities=4% Similarity=-0.039 Sum_probs=15.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 011643 137 IMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456677777777777776665
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.98 E-value=1.3e+02 Score=28.50 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHhhcC-CCCChhhHHHHHHHHhcC
Q 011643 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 213 (480)
.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++.-... ...+..- .+.+...+..
T Consensus 38 pL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHh
Confidence 34444556665433 3334445444322 1122344556677777766666543211 0001111 1223333344
Q ss_pred CChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC---HHHHHHHHHHhhccCCHHH
Q 011643 214 PNLPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT---SFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 288 (480)
|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++ .|..++ ..-.+ .+...+..|+.+
T Consensus 113 ~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~T-pL~~A~~~g~~e- 182 (413)
T PHA02875 113 KKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCT-PLIIAMAKGDIA- 182 (413)
T ss_pred CCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCC-HHHHHHHcCCHH-
Confidence 554 44555566665554321 1233445556777665544443 332222 11112 223333445544
Q ss_pred HHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011643 289 AVDTFLEMEKNGILADVAM---YNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
+.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.|..++
T Consensus 183 ---iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 183 ---ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred ---HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 4444555665554321 123333344556654 3444455665554
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.88 E-value=17 Score=34.08 Aligned_cols=84 Identities=15% Similarity=0.039 Sum_probs=33.7
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNII-LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
.+.+.++.|..++.+..+. .|+...|-.. ..++.+.+++..|+.=+..+.+..+.....|..-..++.+.+.+.+|.
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 3344455555555555543 2322222111 134444455555444444444322222223333333333334444444
Q ss_pred HHHHHHH
Q 011643 395 KVWKYMK 401 (480)
Q Consensus 395 ~~~~~~~ 401 (480)
..|+...
T Consensus 93 ~~l~~~~ 99 (476)
T KOG0376|consen 93 LDLEKVK 99 (476)
T ss_pred HHHHHhh
Confidence 4444433
No 396
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.07 E-value=13 Score=33.21 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHH
Q 011643 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 431 (480)
.|.++.|++.|...++..++....|..-..++.+.+....|++=+...++.+ ||. .-|-.--.+-...|++++|.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHHH
Confidence 3445555555555555444555555555555555555555555554444432 221 1121112222333555555555
Q ss_pred HHHHHHcCCC
Q 011643 432 LEDMIEKGIR 441 (480)
Q Consensus 432 ~~~~~~~~~~ 441 (480)
|....+.++.
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555544443
No 397
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=1.1e+02 Score=31.52 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=73.3
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011643 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
+...|+.+.|.+.-..+- +..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHH
Confidence 345677777766554432 556777777777777888877777776553 444555566677777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
++.+.+..++ |..+. ...-.-.|+.++=.++++.. |..| ..| + .-...|.-++|.++.++..+
T Consensus 719 Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~---g~~~--lay---l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENG---GQLP--LAY---L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhc---Cccc--HHH---H-HHhhcCcHHHHHHHHHhhcc
Confidence 6666554332 22111 11112346666666666543 3222 111 1 12235667777777777655
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.84 E-value=78 Score=24.66 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHHhcCCC-hhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011643 170 NGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPN-LPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~ 242 (480)
|.++.-....+++.-...+++.+.. ....+...|..++.+..+..- --.+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555555544422 012234455555555544443 333455555555555555666666666
Q ss_pred HHHHh
Q 011643 243 DVLCK 247 (480)
Q Consensus 243 ~~~~~ 247 (480)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55543
No 399
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.69 E-value=1.6e+02 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHhHhCCCCcCH
Q 011643 249 GRVDEALGIVKSMDSTVCRPTS 270 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~ 270 (480)
++.+.|+..+..|...|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4455555555555554444443
No 400
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.54 E-value=31 Score=21.31 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011643 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 455678899999999999999987 578888776665443
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.48 E-value=66 Score=23.43 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011643 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
.++|..+.+.+...+.....+--.-+..+.+.|++++|+ ..-. ....||...|-+| +-.+.|-.+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 444555554444443312222222223344555555551 1111 1124455544433 233455555555555554
Q ss_pred hc
Q 011643 193 KD 194 (480)
Q Consensus 193 ~~ 194 (480)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 44
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.94 E-value=43 Score=20.73 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011643 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 411 (480)
-.+.-++.+.|++++|.+..+.+.+.. |+..-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~e--P~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIE--PDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT--TS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhC--CCcHH
Confidence 345667788888888888888888754 55433
No 403
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.27 E-value=30 Score=22.22 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
-.++.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555544
No 404
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.49 E-value=2.3e+02 Score=28.67 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhcCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCC----CC--HHHHHHHHHHHHHcCCHHH
Q 011643 79 LAFCFFKWAEKQQNYEHS--VRAYHSMIESLA-KIRQYQIMWDLVNAMRTKRM----LN--VETFCIIMRKYARVQKVEE 149 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~----~~--~~~~~~li~~~~~~~~~~~ 149 (480)
.|++.++.+.+....+|. ..++-.+...+. ...+++.|+..+++...... .+ -.+-..+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 356666666544444442 334555666665 56788888888887643321 11 112234555666665555
Q ss_pred HHHHHHHHHhcC----CCCCHHHHHHH-HHHHHccCChhhHHHHHHHhhc----CCCCChhhHHHHHHHHh--cCCChhH
Q 011643 150 AVYTFNVMQKYG----VTQNLAAFNGL-LSALCKSKNVRKAQEIFDCMKD----RFIPDSKTYSILLEGWG--KDPNLPR 218 (480)
Q Consensus 150 a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~--~~~~~~~ 218 (480)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.. ...|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 777777665431 11222333333 2233333788888888877765 23344444545554443 3455666
Q ss_pred HHHHHHHHHHcCC---------CCChhhHHHHHHHH--HhcCCHHHHHHHHHHh
Q 011643 219 AREIFREMVDTGC---------NPDIVTYGIMVDVL--CKAGRVDEALGIVKSM 261 (480)
Q Consensus 219 a~~~~~~m~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 261 (480)
+.+.++.+..... .|-..+|..+++.+ ...|+++.+...+.++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766643211 23345555555544 4466666666655554
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.14 E-value=69 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011643 381 IKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~ 401 (480)
.......|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 333444555555555555544
No 406
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.58 E-value=2.5e+02 Score=28.80 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
.-..+...|+.+.-.|++++|-...-.|... +..-|...+..++..++......+ +.......++.+|..++..
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve 464 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVE 464 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHH
Confidence 4567888899999999999999988888665 566677777777777766543333 3332222456677777766
Q ss_pred HHccCChhhHHHHHHHhh--------------cC---CCCChhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 011643 176 LCKSKNVRKAQEIFDCMK--------------DR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~--------------~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 227 (480)
+.. .+...-.+...... .. ...+...-..|+..|...+++..|++++-...
T Consensus 465 ~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 465 FLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 665 22222221111110 00 01111223346666666777777777666554
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.47 E-value=98 Score=24.13 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKL------CEADADTYTMMIKMFCQGGE-LEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l 415 (480)
.+.++.-....+++.....+++.+... ...+...|.+++.+.....- ---+..+|+-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444444444444444444220 11233344555555543333 22334444445444445555555555
Q ss_pred HHHHHh
Q 011643 416 INGLCD 421 (480)
Q Consensus 416 ~~~~~~ 421 (480)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.27 E-value=96 Score=27.61 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011643 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.++++.+.+.++.|....+.-+.-.+.+.=.+...+.+|+.+.. |+.-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----ChhhhHHHHHHHHH
Confidence 46777777888888888888888888888888888888888874 33336666666653
No 409
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=54.70 E-value=1.5e+02 Score=25.96 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=42.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 011643 414 VLINGLCDKGIVSDSCVLLEDMIEKG-IRP-----SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
.++.-|.+.|+.+.|-.++-=+...+ ... +......++......|+|+-+.++.+-+..++++.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 45556666677776666655444322 222 23344566777788899999999999998888764
No 410
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.66 E-value=36 Score=22.17 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (480)
++...++.+++..++..-.++++..+.+....|..+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34445555666666555566666666666666655555555555555443
No 411
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.97 E-value=2.1e+02 Score=27.56 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011643 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
+.|+..|...+..+-+.+.+.+.-.+|.+|....|.++..|-......-..+ +++.|.++|..-...+ +.++..|..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 3466666666666555555666666666666666655555544433333322 3666666665555443 333344433
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.75 E-value=1.5e+02 Score=25.89 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 372 ADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
-++.....+...|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456677778888888888888776653
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.18 E-value=1.3e+02 Score=30.09 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCHHHHHHHHH
Q 011643 310 ALIGAFCKANKFKNVYRVLKDMNSK--GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMIK 382 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~ 382 (480)
+++.+|...|++-.+..+++..... |-+.-...+|..++...+.|.++- .+++..+.+ ...-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL-TDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 6778888888888888888887764 222234467777777778776542 222222221 24456667766666
Q ss_pred HHHh
Q 011643 383 MFCQ 386 (480)
Q Consensus 383 ~~~~ 386 (480)
+-..
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 5443
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.85 E-value=2.7e+02 Score=28.39 Aligned_cols=181 Identities=8% Similarity=-0.017 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHH
Q 011643 213 DPNLPRAREIFREMVDTG-CNPD--IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
..+.+.|..++....... ..+. ...+..+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344566777776653322 1111 1122223222222222344444444433221 2333334444444566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------------CCC-----C-Chhh--------H
Q 011643 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------------GVA-----P-NSRT--------C 343 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~-----p-~~~~--------~ 343 (480)
...+..|.... .-...-.-.+.+++...|+.++|...|+.+... |.. + .... -
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 77777664432 123344445556666677777777777665331 111 0 0000 0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011643 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
..-+..+...|....|...+..+... .+......+.....+.|..+.+.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 11123345556677777666666653 334444555555555666665555443
No 415
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.81 E-value=1.4e+02 Score=25.18 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=12.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC
Q 011643 417 NGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
....+.|+.++|.+.|.++...+
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 33445556666666665555443
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.80 E-value=49 Score=19.88 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=15.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011643 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+.|-..++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555555544443
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.38 E-value=33 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 011643 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (480)
+..|..-.+.|++++|+++++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444444445555555555555444443
No 418
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.30 E-value=85 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=12.3
Q ss_pred HHHHHHccCChhhHHHHHHHhhcC
Q 011643 172 LLSALCKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~ 195 (480)
|.-.|++.|+.+.|.+-|+.-+..
T Consensus 78 LGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhh
Confidence 334455555555555555544433
No 419
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.98 E-value=1.5e+02 Score=25.33 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011643 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 193 (480)
.++.+-....+++-+..-..+++ +...|+..+|...++.-.
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTV 219 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHh
Confidence 33344444444444444444433 345677776666665543
No 420
>PRK09857 putative transposase; Provisional
Probab=51.94 E-value=1.5e+02 Score=26.56 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 011643 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 443 (480)
.++....+.++.++-.++++.+.+. .++.......+..-+...|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334455555555555555443 222223334455555555655667777777777776543
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.85 E-value=1.7e+02 Score=25.69 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.0
Q ss_pred hcCChhHHHHHHHH
Q 011643 109 KIRQYQIMWDLVNA 122 (480)
Q Consensus 109 ~~~~~~~a~~~~~~ 122 (480)
+.+++++|++++-.
T Consensus 2 ~~kky~eAidLL~~ 15 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS 15 (260)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 34556666665543
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.81 E-value=18 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011643 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
.|.-..|-++|+.|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3556667777777777777666 56666654
No 423
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.52 E-value=1.8e+02 Score=25.99 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=37.4
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhCCCh-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011643 316 CKANKFKNVYRVLKDMNSKGVAPNSR----TCNIILNGLIGRGET-DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
.+...+++......+-.+..--|+.. .|..++.+-.-..+- --|.+.++. ..+|..|+.+++..|+.
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh--------lK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH--------LKQYAPLLAAFCSQGQS 337 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH--------HHhhhHHHHHHhcCChH
Confidence 33445566555554433333445554 466666553322111 112233333 34688899999999987
Q ss_pred HHHH
Q 011643 391 EKAF 394 (480)
Q Consensus 391 ~~A~ 394 (480)
+-..
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7543
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.42 E-value=84 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=11.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 011643 138 MRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~ 158 (480)
.......|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666665554
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.19 E-value=42 Score=21.53 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011643 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 425 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.++..++++.+... +-|..--..++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555555432 23444455778999999999999999988754
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.95 E-value=39 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 169 (480)
|+..|....+.|++++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445666666666666666666666666644333333
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.81 E-value=20 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=14.4
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011643 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
|.-..|..+|..|++.|.+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344455555666665555554 2444443
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=1.9e+02 Score=26.06 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HH
Q 011643 342 TCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMI-KMFCQGGELEKAFKVWKYMKLKRFIPSM----HT 411 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~ 411 (480)
.+......|++.|+.+.|++.++...+ +.+.|...+.+-+ -.|....-+.+-.+..+.+.+.|...+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 455556667777777777777766443 4555555444322 2333333344445555555555543332 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 412 FSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
|..+- |....++.+|-.+|-+.+
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 33332 333456777777766554
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.95 E-value=30 Score=30.64 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011643 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
.+..|+..|...+....+.|.+.+.-.+|.++....|.+.+.|-. --.-+...++++.+..+|..-...+ +.++..|-
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 456688889888888888888888999999998888877777654 3344566788888888888877765 44555554
Q ss_pred HH
Q 011643 171 GL 172 (480)
Q Consensus 171 ~l 172 (480)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 43
No 430
>PRK10941 hypothetical protein; Provisional
Probab=49.82 E-value=1.8e+02 Score=25.59 Aligned_cols=79 Identities=8% Similarity=-0.097 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 011643 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLI 455 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~ 455 (480)
.+.+-.+|.+.++++.|.++.+.+....+. +..-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 356667889999999999999999987633 55566666777999999999999999988643 3455555666565554
Q ss_pred h
Q 011643 456 K 456 (480)
Q Consensus 456 ~ 456 (480)
.
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 4
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.97 E-value=1.7e+02 Score=25.11 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=18.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011643 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 245 (480)
++...-+.++++++...+.++...+...+..--+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444444444444444
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.96 E-value=1.2e+02 Score=23.72 Aligned_cols=61 Identities=20% Similarity=0.071 Sum_probs=33.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011643 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
.+.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455555432 233455555555555667777777776666555555444555555555
No 433
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.43 E-value=1e+02 Score=22.24 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011643 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+|..+-+|+..... ....+--.-+..+...|++++|..+.+.+. .|+...|..|-. .+.|-.+.+..-+.++.
T Consensus 23 EA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 23 EANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 66666666654421 011111222334455566666655554331 144444433322 24454454555555555
Q ss_pred hcC
Q 011643 159 KYG 161 (480)
Q Consensus 159 ~~~ 161 (480)
..|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 444
No 434
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.37 E-value=1.3e+02 Score=23.17 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 371 EADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.++..+--.+..++.+..+ +.+.+.+++.+.+...+. .......+.-++.+.++++.+.++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5666666677777777654 556777888877632221 2233344556788888899998888888764
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.63 E-value=1.2e+02 Score=27.05 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011643 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 351 (480)
.++++.+...++.|.-.++..+.-.+.+.=.+.+...+|+.+... ..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 567888888889999988888888888888888999999988863 333666666665
No 436
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.33 E-value=3.2e+02 Score=29.96 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=84.2
Q ss_pred HHhcCCHHHHHH------HHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHH-------HHCCCCCCHHHHHHH
Q 011643 245 LCKAGRVDEALG------IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM-------EKNGILADVAMYNAL 311 (480)
Q Consensus 245 ~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 311 (480)
....|.+.++.+ ++......-.++....|..+...+.+.|+.++|...-... ......-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334455555555 4443333223455667778888888888888887655443 111122233445555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHh-----cC---CCCHHH
Q 011643 312 IGAFCKANKFKNVYRVLKDMNSK-----GV-APN-SRTCNIILNGLIGRGETDEAYRVFRRMIK-----LC---EADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~---~~~~~~ 376 (480)
.......++...|...+.+.... |. .|. ..+++.+-..+...++.+.|.++++.+.. .. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555556666676666665442 11 232 23333333334445777888887777765 11 234456
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 011643 377 YTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~ 397 (480)
+..+.+.+...+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 666666666666666555443
No 437
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.12 E-value=2.2e+02 Score=25.45 Aligned_cols=113 Identities=6% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011643 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+.+.++.....+.+..+. ....-...++.+...|++..|.+++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hhHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 356 TDEAYRVFRRMIK------LCEADADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 356 ~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
+++-......+.. -..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.84 E-value=1e+02 Score=28.98 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011643 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT----------------YTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 338 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
|+......+++.+-..-+-....+.++....+..|+..+ ...|++.++-.|++..|.++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred -------hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011643 402 -------LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 402 -------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
.+-..-.+.++-.+.-+|.-.+++.+|.+.|...+
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.78 E-value=1.3e+02 Score=23.45 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 011643 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
..++..+.+.++.-.|.++++.+.+.+.+.+.
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 34444444444445555555555554433333
No 440
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.37 E-value=2e+02 Score=24.82 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=30.7
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
.++...|++-++++.-..+.+..+.|...|-.-..+.+..=+..+|.+-|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33444555555555555555555555555555555555555555555555555543
No 441
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.36 E-value=1.6e+02 Score=29.50 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=59.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 011643 345 IILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELE------KAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 415 (480)
++..+|...|++-.+.++++.... +.+.-...||..++.+.+.|.++ .|.+.++...-. -|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln---~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLN---GDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcC---CcchHHHHH
Confidence 788999999999999999988876 33344567888888888888765 344555554433 477788777
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 011643 416 INGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+.+-..--.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333444443
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.29 E-value=4e+02 Score=28.19 Aligned_cols=39 Identities=3% Similarity=0.049 Sum_probs=25.1
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011643 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 247 (480)
.|+.....+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 445566677777778777765555566666666666654
No 443
>PRK09857 putative transposase; Provisional
Probab=45.08 E-value=2.2e+02 Score=25.43 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011643 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 408 (480)
+..++......++.++..++++.+.+..+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666666666554444444555666666666766778888888888886644
No 444
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.86 E-value=1.3e+02 Score=24.21 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=19.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
+..+...++.-.|.++++.+.+.++ .+..|....+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444445555555555444 44444444444444444
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.77 E-value=1.6e+02 Score=25.46 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=11.1
Q ss_pred HHHHhhccCCHHHHHHHHHHH
Q 011643 276 LVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~ 296 (480)
+..-|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555554
No 446
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.75 E-value=1.1e+02 Score=22.56 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011643 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
+++.+.++.-.++|+++++-|.++|-.+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455677788888888888888887766554443333
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.68 E-value=3.8e+02 Score=27.78 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011643 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA---RVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
-+...+..+|..+.+.|++++...--..|.+.-+.++..|...+.... ..+....+..+|++....- .++..|.-
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 356677788889999999999888888888887878888877766544 3467777788887776542 23333433
Q ss_pred HHHHH-------HccCChhhHHHHHHHhhc
Q 011643 172 LLSAL-------CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 172 ll~~~-------~~~g~~~~a~~~~~~~~~ 194 (480)
.+..+ -+.++++....+|.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33322 234667777788877765
No 448
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.86 E-value=3.6e+02 Score=27.29 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+......++.++.. |+...++.+++.+.+.|..+.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444455555444 788899999999988875543
No 449
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.81 E-value=2.2e+02 Score=28.45 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=40.9
Q ss_pred hCCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 011643 352 GRGETDEAYRVFRRMIKLCEAD------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
+..++..+.++|..-....+.| ......|.-+|....+.+.|.++++++.+.+.. ++.+--.+..+....|.-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcch
Confidence 3345555555555444322222 123344555555566666666666666554422 333333444455555666
Q ss_pred HHHHHHHHHH
Q 011643 426 SDSCVLLEDM 435 (480)
Q Consensus 426 ~~a~~~~~~~ 435 (480)
++|+.+....
T Consensus 445 e~AL~~~~~~ 454 (872)
T KOG4814|consen 445 EEALTCLQKI 454 (872)
T ss_pred HHHHHHHHHH
Confidence 6665555444
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.67 E-value=1.3e+02 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011643 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777765
No 451
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.57 E-value=1.1e+02 Score=21.41 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcC
Q 011643 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~ 145 (480)
|...-..+...+...|++++|.+.+-.+...+. .+...-..++..+...|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 555556666666666666666666666665544 23444444444444444
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.01 E-value=1.5e+02 Score=25.75 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011643 346 ILNGLIGRGETDEAYRVFRRMIKL------CEADADTYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (480)
+...|...|++++|.++|+.+... ..+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444455556666666665555431 112223334444444555555544443
No 453
>PRK12798 chemotaxis protein; Reviewed
Probab=42.86 E-value=2.9e+02 Score=25.99 Aligned_cols=197 Identities=10% Similarity=0.035 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHH
Q 011643 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRIEDAVDTFLEMEKN--GILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
.|+..++.+.+..+.....++....|-.|+.+- ....+..+|+++|+...-. |--........-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 689999999998887777777777777777654 4566888999999886532 2222334455555566788888887
Q ss_pred HHHHHHHHhCCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011643 325 YRVLKDMNSKGVAPNSR---TCNIILNGLIGRGETDEAYRVFRRMIKLCEAD--ADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
..+-.....+ +.-+++ .+..+...+.+.++-..- .-+..+.....+. ...|..+.+.-.-.|+.+-|.-.-++
T Consensus 205 ~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7766665554 111221 223333444444432222 2244444422332 35788888888888888888877777
Q ss_pred HHhCCCCCCHH-HHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 011643 400 MKLKRFIPSMH-TFSVLIN--GLCDKGIVSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 400 ~~~~~~~p~~~-~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 446 (480)
.....-..+.. .-..+-. +-.-..+++++.+.+..+-...+.|...-
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 76543111111 1111111 12234557777777776665555555433
No 454
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.71 E-value=77 Score=23.35 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=19.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
+..+...+..-.|.++++.+.+.++ .+..|....++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333333444445555555554444 44444444444444444
No 455
>PRK14700 recombination factor protein RarA; Provisional
Probab=42.61 E-value=2.5e+02 Score=25.12 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc---CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----CHH
Q 011643 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK---DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-----RVD 252 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 252 (480)
..+...++..+-.-....+...+--+++++.+ -.|.+.|+-++.+|++.|-.|....-..++-++-..| -..
T Consensus 104 t~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~ 183 (300)
T PRK14700 104 NKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALR 183 (300)
T ss_pred CHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHH
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011643 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.|...++.....|.+.-.......+-.++..-+-..+...+....+
T Consensus 184 ~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 184 VAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 456
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.47 E-value=95 Score=20.23 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+....++.++..+++-...++++..+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455677888888888888899999998888887 4667777666666554
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.18 E-value=19 Score=32.22 Aligned_cols=88 Identities=15% Similarity=-0.016 Sum_probs=40.2
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 011643 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.|.+++|++.|.......++....|.--.+++.+.++...|++=++...+.+ ||. .-|-.--.+-...|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHHH
Confidence 3445555555555544444444555555555555555555555554444322 221 1121112222334555555555
Q ss_pred HHHhHhCCCCc
Q 011643 258 VKSMDSTVCRP 268 (480)
Q Consensus 258 ~~~~~~~~~~~ 268 (480)
+....+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 55555544433
No 458
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.96 E-value=2.2e+02 Score=24.39 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=76.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011643 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
.+..|.+.-++.-|.....++.+ ...+-.+ +--|.+..+..-..++.+-....++.-+..-...++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34455555555555444444443 1112222 223455555444444444444444444444444444 345677
Q ss_pred hhHHHHHHHHHHhc-------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011643 356 TDEAYRVFRRMIKL-------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 356 ~~~a~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...|+.-++.-..+ ..|.+.....+++.|.. +++++|.+++.++-+.|+.|. ...+.+.+.+
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 77777776655441 35778888888877754 689999999999999998864 3444455544
No 459
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.86 E-value=3.4e+02 Score=26.40 Aligned_cols=48 Identities=6% Similarity=-0.043 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011643 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 180 (480)
.....++.+ .+.++++.|..++..|...|..|....-..+..++-..|
T Consensus 245 ~~i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 245 EVVRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 334444444 355888888888888888886666554444433433333
No 460
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.71 E-value=2.4e+02 Score=25.79 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011643 356 TDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
.++...++..+++.+| .-+.-|-.+++.....|.++..+.+|++++..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455566666555332 2234677788888888888888888888888888877766666666544
No 461
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.43 E-value=2.6e+02 Score=25.02 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhccCCHHHHH
Q 011643 271 FIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~ 290 (480)
.+|.-|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45777888888888877543
No 462
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.35 E-value=1.2e+02 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
..|.|...-..+...+...|++++|.+.+-.+.+.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34455555555556666666666666655555544
No 463
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.23 E-value=2.7e+02 Score=25.10 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
++.....++...++.|+.+.-..+++.... .++......++.+++...+.+...++++.+..
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444444444444444443333333332 22444444555555555555555555555544
No 464
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.79 E-value=67 Score=23.94 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=15.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHc
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (480)
+..+...+..-.|.++++.+...++ .+..|....+..+.+.
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3333333334444444444444443 3333333333333333
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.72 E-value=1.6e+02 Score=30.54 Aligned_cols=129 Identities=10% Similarity=0.059 Sum_probs=71.3
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011643 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+..+|+++.|++.-..+. +..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 445677777766655543 566777777777777777777777766653 233333455667777666
Q ss_pred HHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011643 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
++....+... |.... .....-.|+.++-.+++...-. . +. .|. .....|.-++|.++.++...
T Consensus 719 Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~g~---~-~l-ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENGGQ---L-PL-AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhcCc---c-cH-HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6555444321 21111 1111123566655555544322 1 21 121 12346778889998888766
No 466
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.68 E-value=4.2e+02 Score=27.20 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+......++.++.. ++...++.+++.+...|+.+.
T Consensus 245 d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 245 DKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 33444555555444 778888888888888776443
No 467
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.68 E-value=1e+02 Score=20.49 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 011643 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (480)
+.+.|..++..+....+.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 455666666666665666777777776666554
No 468
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.54 E-value=2.6e+02 Score=24.74 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhh----cc
Q 011643 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG----VE 283 (480)
Q Consensus 215 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 283 (480)
+..+|..+|.+.-+.|..+...+...+...|.... +...|...+.+....+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 45555555555555553322112222222222210 2235666666665554 2223333333332 23
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 011643 284 NRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~ 301 (480)
.+.++|...|...-+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 356667777776666553
No 469
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.43 E-value=3.3e+02 Score=25.87 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011643 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
.+.+.|...+..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555555555555544443333333333
No 470
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.91 E-value=3.5e+02 Score=29.61 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.....|..+...+-+.|+.++|+..=
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 44555666666666666666666543
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.88 E-value=2.2e+02 Score=23.57 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH-HHHccCC--hhhHHHH
Q 011643 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY--GVTQNLAAFNGLLS-ALCKSKN--VRKAQEI 188 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~-~~~~~g~--~~~a~~~ 188 (480)
++++++-+++.. ++...-.....|++++|..-++++.+. .++.-...|..+.. +++..+. +-+|.-+
T Consensus 20 EE~l~lsRei~r--------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l 91 (204)
T COG2178 20 EEALKLSREIVR--------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLL 91 (204)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHH
Q ss_pred HHHhhcCCCCChh----hHHHHHHHHhc--------------CCChhHHHHHHHHHHH
Q 011643 189 FDCMKDRFIPDSK----TYSILLEGWGK--------------DPNLPRAREIFREMVD 228 (480)
Q Consensus 189 ~~~~~~~~~~~~~----~~~~l~~~~~~--------------~~~~~~a~~~~~~m~~ 228 (480)
+.-+..+..|+.. .+...+.+.+. .|+++.|.+.++-|.+
T Consensus 92 ~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 92 YSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.46 E-value=1.8e+02 Score=22.65 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011643 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4444444444444444 34444444444444443
No 473
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.84 E-value=3.2e+02 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
...++.+. ..|+..++..+++.+...|..| ......+.
T Consensus 238 if~l~~ai-~~~~~~~a~~~~~~l~~~~~~~-~~il~~l~ 275 (367)
T PRK14970 238 YINVTDLI-LENKIPELLLAFNEILRKGFDG-HHFIAGLA 275 (367)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 33355554 4578999999999988877555 34444443
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.82 E-value=2e+02 Score=23.19 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=31.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 011643 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
+...+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-..
T Consensus 21 GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 21 NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344443322 334444444555567777777776665555555555566666666543
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.63 E-value=3.4e+02 Score=25.49 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCC
Q 011643 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---------GVTQ 164 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 164 (480)
...+.-+.+-|..+|+++.|.+.|.+.+.--. .....|-.+|..-.-.|+|.....+..+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45677788889999999999999988554321 34556777788888888888777777666543 1333
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011643 165 NLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
....+..+.....+ .+..|.+.|-..
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 44445555444433 566665555443
No 476
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.59 E-value=2.8e+02 Score=24.59 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011643 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTY-TMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 405 (480)
..+..+...|++.++.+.+.++.++..+ +.+.|...- ..|.-.|....-+++-.+..+.|.++|.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3455555556666666655555544333 233332211 1122223333334455555555555553
No 477
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.55 E-value=2.8e+02 Score=24.54 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011643 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 404 (480)
.|...+.++.... +......+...|.. ..+.++|...|....+.|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555422 33333344444432 336667777777777666
No 478
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.54 E-value=2.5e+02 Score=23.90 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 011643 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETF--CIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.+.......|.|+--|.-...+.+|.+.|..-..-.+ .+..++ ..-|+.....|+.+.|++....+
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3344555555555444444444444444433221111 222222 23445556666666666665554
No 479
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.15 E-value=4.6e+02 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=22.1
Q ss_pred HhhCCCCCCHHHHHHHHHHHhhCchHHHHHHHHH
Q 011643 54 LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87 (480)
Q Consensus 54 l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~ 87 (480)
+.+.|+..+++.+..+.+....+.+.|+.+++.+
T Consensus 196 l~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQa 229 (700)
T PRK12323 196 LGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQA 229 (700)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3356777777777666666555556777777653
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.14 E-value=3.4e+02 Score=25.41 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=38.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChh--hHHHHHHHH--HhCCChhHHHHHHHHHHh
Q 011643 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSR--TCNIILNGL--IGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 368 (480)
..+.+.+++..|.+++..+... +.++.. .+..+..+| -..-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455788999999999999886 444443 344444444 346778888888887765
No 481
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.13 E-value=3.1e+02 Score=24.88 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Q 011643 83 FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RM-LNVETFCIIMRKYARVQKVEEAVYTFNVM--- 157 (480)
Q Consensus 83 ~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~--- 157 (480)
+++.+....+.+.|...++.+... ...++++..+..+...+. |. --.+.+......|++.|+.+.|++.+.+.
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344443444455565555555432 222333333333333332 11 23344555666677777777777666444
Q ss_pred -HhcCCCCCHHHHHH
Q 011643 158 -QKYGVTQNLAAFNG 171 (480)
Q Consensus 158 -~~~~~~~~~~~~~~ 171 (480)
...|...|+..+..
T Consensus 134 tvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 134 TVSLGHKIDVVFYKI 148 (393)
T ss_pred HhhcccchhhHHHHH
Confidence 33455556555443
No 482
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=37.20 E-value=3.3e+02 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011643 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
...++.+.. .|+..+|..+++.+.+.|.+| ......+...
T Consensus 247 i~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~~ 286 (355)
T TIGR02397 247 LIELLEAIL-NKDTAEALKILDEILESGVDP-EKFLEDLIEI 286 (355)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 334555544 488999999999998877554 3344444433
No 483
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=36.92 E-value=97 Score=19.02 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhhCchHHHH
Q 011643 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82 (480)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 82 (480)
-...|++.|+.++.+.+..++..+.+.-.+|.+
T Consensus 17 ak~~L~k~GIeLsme~~qP~m~L~~~VM~eAYE 49 (56)
T PF10815_consen 17 AKEELDKKGIELSMEMLQPLMQLLTKVMNEAYE 49 (56)
T ss_pred HHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999988888777654444443
No 484
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.74 E-value=2e+02 Score=22.24 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011643 129 LNVETFCIIMRKYARVQ---KVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
++..+--.+..++.++. +..+.+.+++.+.+...+.. ....-.|.-++.+.++++++.++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444455555555544 35556667777665221211 12222344466677777777777776655
No 485
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=36.23 E-value=4.7e+02 Score=26.41 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.++.. ...|+.+.|+.+++.+...|..|-
T Consensus 264 ~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 264 DLFEA-LMRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHcCCCHH
Confidence 44443 345788889999888888775554
No 486
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.17 E-value=3.6e+02 Score=25.06 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
++......++.+.. .++...+..+++.+.+.|..|.
T Consensus 244 ~~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 244 LNEKQSFLLTDALL-KKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 45555666666654 4789999999999998775544
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.94 E-value=1e+02 Score=29.24 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=65.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC
Q 011643 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN-ALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR 353 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 353 (480)
-+..+...++++.|..++.+.++. .|+...|- .=..++.+.+++..|..=+....+.. |+ ...|..=..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhH
Confidence 345667788999999999999886 45544443 33368888999999988888887753 32 22233333445555
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011643 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
+.+.+|...|+.... ..|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~-l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK-LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhh-cCcCcHHHHHHHHHH
Confidence 666666666666554 344444444444443
No 488
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.72 E-value=83 Score=26.70 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=31.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011643 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
..+.++.+.|.+++.++...-.. ....|-.+...--+.|+.+.|.+.+++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556666666666666554211 3455555555556666666666666666653
No 489
>PLN03025 replication factor C subunit; Provisional
Probab=35.47 E-value=3.4e+02 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.......++... ..++++.|...+..+...|.+|.
T Consensus 224 ~~~~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 224 HPLHVKNIVRNC-LKGKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 333444444443 34677778887777777776554
No 490
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.37 E-value=1.8e+02 Score=21.32 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=14.2
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhc
Q 011643 169 FNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 169 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555543
No 491
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.26 E-value=2.8e+02 Score=23.46 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334444455555555555555544
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.13 E-value=1.8e+02 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 011643 240 IMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.++.-|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34455666677777777776653
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.07 E-value=1.2e+02 Score=22.26 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 011643 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555566667777777777665566666666666676666543
No 494
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.93 E-value=2e+02 Score=21.78 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011643 62 SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 121 (480)
+..-+..+--.+...-..+..+|..+..+.-...-+..|......+-..|++.+|.++|+
T Consensus 64 nD~RyLkiWi~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 64 NDPRYLKIWLKYADNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 495
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.82 E-value=3.8e+02 Score=24.92 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhh-ccCCHHHHHHHHHHHHH
Q 011643 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG-VENRIEDAVDTFLEMEK 298 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 298 (480)
+..+.+.|.+..|+++.+.+.+.+..-|+.....+|+.|+ +.++++-.+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566778888888888888888764446666666676664 55667666777666544
No 496
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.88 E-value=5.5e+02 Score=26.48 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=58.7
Q ss_pred HHHHHHHHhHhCCCCcC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcC
Q 011643 253 EALGIVKSMDSTVCRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA----------MYNALIGAFCKAN 319 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~ 319 (480)
+-..++.+|...--.|+ ..+...++-.|....+++...++.+.+... ||.. .|...++--.+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 33445556654332333 344555666677777777777777777653 3211 1222222223456
Q ss_pred CHhHHHHHHHHHHhCC--CCCChhhH-----HH--HHHHHHhCCChhHHHHHHHHHHh
Q 011643 320 KFKNVYRVLKDMNSKG--VAPNSRTC-----NI--ILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~--~~p~~~~~-----~~--l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+-++|..+.-.+++.. +.||.... .- +-..|...+..+.|.++|++.-+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 6777777666666542 33443221 11 11223445566777777777665
No 497
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=33.66 E-value=4.7e+02 Score=25.71 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011643 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.+......++.+.. .|+...|+.+++.+...|..|.
T Consensus 256 ~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 256 VDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 34444555555544 4889999999999999886554
No 498
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.63 E-value=4.1e+02 Score=24.93 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH--cCCHhHHHHHHHHHHhC
Q 011643 277 VHTYGVENRIEDAVDTFLEMEKNGILADVA--MYNALIGAFCK--ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~~~~~ 334 (480)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999999987 555544 45555555554 55788999999987764
No 499
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.37 E-value=1.6e+02 Score=20.12 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=18.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHH
Q 011643 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVET 133 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 133 (480)
++.+.++.-.++|+++++-+.++|..+.+.
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrGEi~~E~ 67 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRGEITPEM 67 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCCCHHH
Confidence 444556666677777777777666655443
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.92 E-value=2e+02 Score=21.20 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011643 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
+++..+.+....++|+++++.|.+.| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555666677777777777777777 455544444433
Done!