BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011644
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 28/266 (10%)
Query: 137 SQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPD 196
S+ +V TAL + ++K WL + S MLA + S AD ++ + + D
Sbjct: 15 SRASVATAL----TLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPAD 70
Query: 197 ALHPYGYSKERFVWSLISAVGIFCLGSGATIV-NGIQHLWTAEAPENMKYAALVICGSFI 255
H YG+ K + +L A F +GS ++ G + L EN +V + +
Sbjct: 71 HDHRYGHGKAEPLAAL--AQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIV 128
Query: 256 IEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAV 315
+ A LV +Q K+ AA T+ V + + L + A L+A+
Sbjct: 129 LTLA--LVLLQ--KRALAATNSTV--------------VEADSLHYKSDLFLNAAVLLAL 170
Query: 316 NVTGNAIY--DPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVV 373
++ + D + ++++ +G A L R+ AL+ R +D+ ++I K DP V
Sbjct: 171 VLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRV 230
Query: 374 DALYDCKSEVIGPG-FFRFKAEIDFN 398
L+D ++ G F +F E+D N
Sbjct: 231 LGLHDLRTRQAGKTVFIQFHLELDGN 256
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 150 LVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFV 209
L+ +K W T S +LA +V S+ D + + S + D H +G+ K +
Sbjct: 22 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESL 81
Query: 210 WSLISAVGIFCLGSGATI-VNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAV 268
+L A +F GS + + GIQHL + + +V + I +LV+ Q
Sbjct: 82 AAL--AQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALIC--TIILVSFQR- 136
Query: 269 KKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVT--GNAIYDPI 326
W S AV + + +++ GA L+A+ ++ G D +
Sbjct: 137 ---------------WVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADAL 181
Query: 327 GSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGP 386
++ +G + A+ + +L+ RA+ D + ++I+ + + P V +D ++ GP
Sbjct: 182 FALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGP 241
Query: 387 GFF 389
F
Sbjct: 242 TRF 244
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 150 LVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFV 209
L+ +K W T S +LA +V S+ D + + S + D H +G+ K +
Sbjct: 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESL 74
Query: 210 WSLISAVGIFCLGSGATI-VNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAV 268
+L A +F GS + + GIQHL + + +V + I +LV+ Q
Sbjct: 75 AAL--AQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALIC--TIILVSFQR- 129
Query: 269 KKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVT--GNAIYDPI 326
W S AV + + +++ GA L+A+ ++ G D +
Sbjct: 130 ---------------WVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADAL 174
Query: 327 GSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGP 386
++ +G + A+ + +L+ RA+ D + ++I+ + + P V +D ++ GP
Sbjct: 175 FALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGP 234
Query: 387 GFF 389
F
Sbjct: 235 TRF 237
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 167 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGAT 226
++A ++H ++D + + +A ++S R +GY K F ++ S G F L G T
Sbjct: 175 VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234
Query: 227 I 227
+
Sbjct: 235 L 235
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
Length = 267
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 167 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGAT 226
++A ++H ++D + + +A ++S R +GY K F ++ S G F L G T
Sbjct: 55 VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 114
Query: 227 I 227
+
Sbjct: 115 L 115
>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
Length = 266
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 167 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGAT 226
++A ++H ++D + + +A ++S R +GY K F ++ S G F L G T
Sbjct: 54 VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 113
Query: 227 I 227
+
Sbjct: 114 L 114
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 33 LDLMRTSWRFLSRLLHSSKRTAVLNPSSPFNV-----FINDNNGKFFSILEHTN 81
++L + R LSR SS R + + PFN+ ++N GKFF I N
Sbjct: 188 VELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKN 241
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 33 LDLMRTSWRFLSRLLHSSKRTAVLNPSSPFNV-----FINDNNGKFFSILEHTN 81
++L + R LSR SS R + + PFN+ ++N GKFF I N
Sbjct: 188 VELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKN 241
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 33 LDLMRTSWRFLSRLLHSSKRTAVLNPSSPFNV-----FINDNNGKFFSILEHTN 81
++L + R LSR SS R + + PFN+ ++N GKFF I N
Sbjct: 188 VELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKN 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,039,655
Number of Sequences: 62578
Number of extensions: 557045
Number of successful extensions: 1488
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 18
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)