Query 011644
Match_columns 480
No_of_seqs 257 out of 1664
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2802 Membrane protein HUEL 100.0 1.6E-59 3.4E-64 461.5 22.5 399 36-471 89-502 (503)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 4.2E-50 9E-55 404.2 37.1 284 133-474 7-292 (304)
3 PRK09509 fieF ferrous iron eff 100.0 5.4E-48 1.2E-52 389.5 37.7 280 136-473 8-288 (299)
4 PRK03557 zinc transporter ZitB 100.0 1.3E-45 2.9E-50 373.9 36.5 275 137-474 17-292 (312)
5 COG1230 CzcD Co/Zn/Cd efflux s 100.0 2.8E-44 6E-49 355.4 32.7 277 136-475 19-295 (296)
6 TIGR01297 CDF cation diffusion 100.0 4.5E-44 9.7E-49 354.8 30.3 266 151-473 2-267 (268)
7 PF01545 Cation_efflux: Cation 100.0 1E-41 2.2E-46 340.3 15.3 280 141-474 1-281 (284)
8 KOG1485 Mitochondrial Fe2+ tra 100.0 8.1E-35 1.8E-39 295.2 29.0 266 133-423 109-384 (412)
9 KOG1484 Putative Zn2+ transpor 100.0 1.1E-33 2.4E-38 278.3 26.0 265 132-402 28-320 (354)
10 KOG1482 Zn2+ transporter [Inor 100.0 7.2E-33 1.6E-37 276.4 22.6 283 137-476 71-368 (379)
11 KOG1483 Zn2+ transporter ZNT1 100.0 5.6E-28 1.2E-32 242.2 13.4 258 139-400 9-341 (404)
12 COG3965 Predicted Co/Zn/Cd cat 99.9 2.5E-23 5.4E-28 198.0 19.5 257 134-406 15-279 (314)
13 COG0053 MMT1 Predicted Co/Zn/C 97.8 0.00015 3.2E-09 73.7 11.8 95 138-241 120-214 (304)
14 TIGR01297 CDF cation diffusion 97.7 0.00024 5.2E-09 70.4 10.9 93 139-240 98-190 (268)
15 PRK09509 fieF ferrous iron eff 97.7 0.00044 9.6E-09 70.0 12.3 93 140-241 120-212 (299)
16 PRK03557 zinc transporter ZitB 96.5 0.018 4E-07 58.7 10.6 72 162-241 148-219 (312)
17 KOG1485 Mitochondrial Fe2+ tra 90.4 1.4 3E-05 46.4 8.9 76 153-237 245-320 (412)
18 COG4956 Integral membrane prot 87.0 14 0.00031 37.5 13.0 54 302-355 89-142 (356)
19 PF14535 AMP-binding_C_2: AMP- 85.7 9.4 0.0002 31.7 9.7 78 360-478 6-83 (96)
20 PF01545 Cation_efflux: Cation 85.4 0.85 1.8E-05 45.3 3.8 90 141-238 109-201 (284)
21 COG1230 CzcD Co/Zn/Cd efflux s 79.1 12 0.00027 37.9 9.2 93 139-241 129-221 (296)
22 COG4858 Uncharacterized membra 76.5 70 0.0015 30.3 12.7 23 320-342 190-212 (226)
23 COG1539 FolB Dihydroneopterin 72.8 24 0.00052 31.0 8.3 76 386-479 26-106 (121)
24 COG3696 Putative silver efflux 72.4 44 0.00094 38.9 12.1 110 359-475 578-712 (1027)
25 PF09580 Spore_YhcN_YlaJ: Spor 69.4 33 0.00071 31.6 9.0 69 355-471 72-140 (177)
26 cd00534 DHNA_DHNTPE Dihydroneo 62.0 66 0.0014 27.6 8.9 33 445-477 71-103 (118)
27 TIGR00525 folB dihydroneopteri 59.9 88 0.0019 26.8 9.3 33 445-477 70-102 (116)
28 PLN02601 beta-carotene hydroxy 58.4 2.1E+02 0.0045 28.8 14.8 106 235-347 123-231 (303)
29 PF09877 DUF2104: Predicted me 54.7 32 0.0007 29.0 5.2 31 183-220 66-96 (99)
30 PF02482 Ribosomal_S30AE: Sigm 52.8 59 0.0013 26.5 6.8 73 356-460 12-90 (97)
31 TIGR00489 aEF-1_beta translati 51.4 91 0.002 25.8 7.5 43 358-400 17-60 (88)
32 KOG1484 Putative Zn2+ transpor 51.1 45 0.00098 34.4 6.7 63 172-242 212-274 (354)
33 PF10934 DUF2634: Protein of u 50.5 82 0.0018 27.1 7.4 50 347-397 53-107 (112)
34 TIGR00526 folB_dom FolB domain 50.0 93 0.002 26.7 7.8 31 445-475 71-101 (118)
35 PRK10324 translation inhibitor 47.3 86 0.0019 27.0 7.1 45 355-401 12-60 (113)
36 PRK10470 ribosome hibernation 46.7 1.1E+02 0.0023 25.2 7.4 21 440-460 68-88 (95)
37 TIGR02898 spore_YhcN_YlaJ spor 46.2 1.3E+02 0.0028 27.7 8.4 68 358-471 54-121 (158)
38 PF00736 EF1_GNE: EF-1 guanine 44.3 1.8E+02 0.0039 24.0 8.7 68 358-471 15-85 (89)
39 PRK00435 ef1B elongation facto 43.4 1.3E+02 0.0029 24.8 7.3 43 358-400 17-60 (88)
40 PF02790 COX2_TM: Cytochrome C 41.9 91 0.002 24.7 6.1 29 194-222 50-78 (84)
41 TIGR00741 yfiA ribosomal subun 41.3 1.5E+02 0.0032 24.1 7.5 22 439-460 67-88 (95)
42 PF11712 Vma12: Endoplasmic re 38.8 1.1E+02 0.0024 27.4 6.7 23 142-164 78-100 (142)
43 PF02152 FolB: Dihydroneopteri 38.4 1.5E+02 0.0033 24.9 7.3 33 445-477 68-100 (113)
44 PRK10597 DNA damage-inducible 37.9 66 0.0014 26.3 4.5 27 446-472 18-45 (81)
45 PRK11593 folB bifunctional dih 35.8 2E+02 0.0043 24.7 7.7 34 445-479 71-104 (119)
46 cd00292 EF1B Elongation factor 35.8 2.5E+02 0.0054 23.2 7.8 42 359-400 18-60 (88)
47 PF06570 DUF1129: Protein of u 35.6 3.9E+02 0.0084 25.3 15.5 20 321-340 176-195 (206)
48 COG1575 MenA 1,4-dihydroxy-2-n 35.1 5.1E+02 0.011 26.5 20.4 40 171-210 114-153 (303)
49 COG1544 Ribosome-associated pr 33.9 1.7E+02 0.0037 25.2 6.8 21 440-460 70-90 (110)
50 PRK11245 folX D-erythro-7,8-di 33.6 2.8E+02 0.006 23.9 8.2 34 445-479 75-108 (120)
51 cd00552 RaiA RaiA ("ribosome-a 32.1 1.3E+02 0.0028 24.3 5.6 22 439-460 69-90 (93)
52 PF05977 MFS_3: Transmembrane 31.8 7.2E+02 0.016 27.3 19.2 24 139-162 140-163 (524)
53 PF04972 BON: BON domain; Int 31.4 28 0.0006 26.2 1.4 30 349-378 29-58 (64)
54 PF07290 DUF1449: Protein of u 31.0 4.8E+02 0.01 25.0 10.0 27 140-166 7-33 (202)
55 PF09685 Tic20: Tic20-like pro 27.4 3.5E+02 0.0076 22.2 9.3 65 136-201 40-104 (109)
56 PRK00907 hypothetical protein; 27.1 3.6E+02 0.0078 22.5 7.4 46 351-398 23-68 (92)
57 PF00958 GMP_synt_C: GMP synth 27.0 1.1E+02 0.0023 25.7 4.2 30 447-476 59-88 (93)
58 COG4988 CydD ABC-type transpor 26.7 8.5E+02 0.019 27.1 12.1 54 208-263 6-59 (559)
59 PRK02047 hypothetical protein; 25.2 3.8E+02 0.0083 22.1 7.3 42 356-398 26-67 (91)
60 COG4035 Predicted membrane pro 25.0 90 0.0019 26.1 3.3 42 173-221 62-104 (108)
61 COG3097 Uncharacterized protei 24.7 3.2E+02 0.0069 23.0 6.4 58 379-468 39-96 (106)
62 PF15050 SCIMP: SCIMP protein 24.4 1.2E+02 0.0027 26.5 4.2 25 249-273 16-40 (133)
63 COG3559 TnrB3 Putative exporte 24.1 9.4E+02 0.02 26.1 14.2 52 304-355 408-460 (536)
64 PRK14647 hypothetical protein; 23.5 5.7E+02 0.012 23.3 9.3 32 374-406 23-54 (159)
65 PRK00092 ribosome maturation p 23.1 5.6E+02 0.012 23.1 9.1 41 363-406 13-53 (154)
66 PRK11380 hypothetical protein; 22.2 8.9E+02 0.019 25.3 10.5 15 191-205 7-22 (353)
67 COG2149 Predicted membrane pro 22.1 5.4E+02 0.012 22.6 8.4 34 203-236 53-86 (120)
68 COG0779 Uncharacterized protei 21.7 6.3E+02 0.014 23.1 8.8 32 374-406 23-54 (153)
69 PRK14634 hypothetical protein; 21.6 6.2E+02 0.013 23.0 8.9 32 374-406 22-55 (155)
70 PF07332 DUF1469: Protein of u 21.2 5.1E+02 0.011 21.9 8.6 44 326-369 73-117 (121)
71 PRK14635 hypothetical protein; 21.1 6.5E+02 0.014 23.1 9.6 50 354-406 2-55 (162)
72 PRK14646 hypothetical protein; 20.9 6.3E+02 0.014 23.0 8.5 32 374-406 22-55 (155)
73 PRK10132 hypothetical protein; 20.0 3.1E+02 0.0066 23.6 5.8 43 412-459 14-56 (108)
74 COG2056 Predicted permease [Ge 20.0 1E+03 0.022 25.2 10.4 29 243-271 190-219 (444)
No 1
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-59 Score=461.48 Aligned_cols=399 Identities=39% Similarity=0.567 Sum_probs=374.3
Q ss_pred hhhhHHHHHhhhccccccc---ccCCCCCc--------eEEeeCC-CCcccccccccccccccccccccccc-ccccccc
Q 011644 36 MRTSWRFLSRLLHSSKRTA---VLNPSSPF--------NVFINDN-NGKFFSILEHTNQFRGFCSVHCSKRF-VLLGLVS 102 (480)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 102 (480)
||..++..|+++|||+..+ .|+++.++ |-|.|.. +..+++....++|.+++-++.|.+++ +-+|...
T Consensus 89 kq~~k~~~s~a~ls~r~ry~e~n~i~~v~aiaeF~lk~s~ledl~K~r~~s~~~~~ssh~~yl~sdv~~kal~v~gs~ea 168 (503)
T KOG2802|consen 89 KQEPKQVRSKAVLSKRERYTENNFITGVRAIAEFCLKSSDLEDLPKIRRRSPHEDTSSHTVYLRSDVEAKALEVWGSPEA 168 (503)
T ss_pred chhhhhhhhHHhhcchhcchhhcccchhHHHHHhhccccchhhcccccccCcccCCCCceEEeehhhhhhhheeecCHHH
Confidence 7899999999999999987 78888877 7788776 56666666668899999999998888 8889999
Q ss_pred ccCCCCCcccccccCcchhhhhhhhhchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 011644 103 FDNSGSNQHHKYSSNRNFFTRAKQVKKIETTD--EHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFAN 180 (480)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s 180 (480)
.+++..|+..+|..|..+..+.++.++.+... +.+.|++..++++|++-+.+|+.+|++|||.+|+|+++||++|+.+
T Consensus 169 L~rerrplve~yr~~l~~~~R~~~~~R~e~~n~~k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~N 248 (503)
T KOG2802|consen 169 LARERRPLVEEYRERLFRNQRILREYRDELGNTAKGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCN 248 (503)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHH
Confidence 99999899999999999888888877776554 7788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 011644 181 QVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGAS 260 (480)
Q Consensus 181 ~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~ 260 (480)
|+++.+|++.+.+.||..|||||+++.+++++|.++.||.+|++..+|++++.|++|+|++...|++.++..+++.++..
T Consensus 249 Q~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGas 328 (503)
T KOG2802|consen 249 QLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGAS 328 (503)
T ss_pred HHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccchhHHHHHHhcCCCCchhhccchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHH
Q 011644 261 LLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAI 340 (480)
Q Consensus 261 ~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~ 340 (480)
++.+.+..+++++.++.+++.+.|.++||++.+|++||.++..|++||++++.+..++|.|+.|++++++|+.++...
T Consensus 329 llvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV-- 406 (503)
T KOG2802|consen 329 LLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVLLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV-- 406 (503)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEEEecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHH
Q 011644 341 FLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFH 420 (480)
Q Consensus 341 ~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~ 420 (480)
+.+++|++..-.|++.+++.++|++++.+.++.+|+ ++|++++||
T Consensus 407 --------------------------------e~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~---kqd~akml~ 451 (503)
T KOG2802|consen 407 --------------------------------ENDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLE---KQDFAKMLQ 451 (503)
T ss_pred --------------------------------HHhhhhccceeeccceeEEEEEeccCchhhHHHHHh---HHHHHHHHH
Confidence 234899999999999999999999999999999987 468999999
Q ss_pred HHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEe
Q 011644 421 EAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEA 471 (480)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~ 471 (480)
++.+-.++++++.+|.+|||+|+++++.++||+|++|++++|+|+|||+|+
T Consensus 452 e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEkel~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 452 EIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKELKKRNPEIRHVDLEI 502 (503)
T ss_pred HHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHHHHHhCCCceeeeeec
Confidence 999999999999999999999999999999999999999999999999997
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-50 Score=404.24 Aligned_cols=284 Identities=22% Similarity=0.289 Sum_probs=260.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHH
Q 011644 133 TDEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSL 212 (480)
Q Consensus 133 ~~~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~al 212 (480)
+.+..+++.++++++|++++++|+++|+++||.||+|||+||++|++++++.++++++++||||++|||||+|+|+++++
T Consensus 7 ~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl 86 (304)
T COG0053 7 RLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASL 86 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCch
Q 011644 213 ISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSV 292 (480)
Q Consensus 213 i~a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~ 292 (480)
+.+++++++| .+++++++.+++.|.+++.+++++++++++++++.+.+.+.++..+ +.+++.+.++.+|.
T Consensus 87 ~~~~~i~~~g-~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~k---k~~S~aL~Ada~h~------ 156 (304)
T COG0053 87 IVSILIFAAG-FEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGK---KTNSQALIADALHH------ 156 (304)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHhHHH------
Confidence 9999999876 4699999999999999988899999999999999988877766654 57899999999983
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCC
Q 011644 293 AVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPV 372 (480)
Q Consensus 293 ~v~l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~g 372 (480)
..|.+.+++++++. . ..++||+|+||+++++|+++|++++++++||++..|+|+.+|++..++|++++.+.|+
T Consensus 157 ---~sD~~ts~~~lvgl---~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~ 229 (304)
T COG0053 157 ---RSDVLTSLAVLVGL---L-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPG 229 (304)
T ss_pred ---HHHHHHHHHHHHHH---H-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCc
Confidence 45888888887764 3 5678999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHH
Q 011644 373 VDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDR 452 (480)
Q Consensus 373 V~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~r 452 (480)
|.++|++|+|+.|+..+ +++|++++|+++++++ |++.++
T Consensus 230 V~~v~~lr~R~~G~~~~-id~~i~v~~~ls~~ea----------------------------------------h~I~~~ 268 (304)
T COG0053 230 VKGVHDLRTRKSGSRIF-IDVHIEVDPDLSLEEA----------------------------------------HEIADE 268 (304)
T ss_pred ceeeecceeeeeCCeEE-EEEEEEECCCCChHHH----------------------------------------HHHHHH
Confidence 99999999999999988 9999999999999888 788999
Q ss_pred HHHHHHhhCCCeeEEE--EEecCC
Q 011644 453 LEKEIQDLVPGIRHVD--IEAHNP 474 (480)
Q Consensus 453 IE~~i~~~~P~i~~v~--iE~~~~ 474 (480)
+|++|++.+|++.+++ +||...
T Consensus 269 ie~~i~~~~~~~~~v~IhveP~~~ 292 (304)
T COG0053 269 VEKRIKKEFPKVADVTIHVEPLGE 292 (304)
T ss_pred HHHHHHHhcCCCceEEEEecCCcc
Confidence 9999999999888855 555443
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=5.4e-48 Score=389.45 Aligned_cols=280 Identities=18% Similarity=0.192 Sum_probs=250.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHH
Q 011644 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISA 215 (480)
Q Consensus 136 ~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a 215 (480)
..+|+.++++++|++++++|+++|+++||.||+|||+||++|++++++++++.++++||||++|||||+|+|++++++++
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhc
Q 011644 216 VGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVM 295 (480)
Q Consensus 216 ~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~ 295 (480)
+++++++ .+++++|++++++|++.....+++++++++++++.+.+++.++..+ +.+++.++++.+| .
T Consensus 88 ~~l~~~~-~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~---~~~s~~l~a~~~~---------~ 154 (299)
T PRK09509 88 MFISGSA-LFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVR---KTQSQAVRADMLH---------Y 154 (299)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHH---------H
Confidence 9987764 5799999999999988777777788888899999887666655443 3578899999887 6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcce
Q 011644 296 TEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDA 375 (480)
Q Consensus 296 l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~ 375 (480)
..|++.+.+++++. .+ .++||+|+||++++++++++++.++++++++...|+|++||++..++|++.+.+.|+|.+
T Consensus 155 ~~D~~~s~~vl~~~---~~-~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~ 230 (299)
T PRK09509 155 QSDVMMNGAILLAL---GL-SWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSG 230 (299)
T ss_pred HHHHHHHHHHHHHH---HH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcC
Confidence 78888887665543 22 457999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHH
Q 011644 376 LYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEK 455 (480)
Q Consensus 376 v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~ 455 (480)
+|++|+|+.|+..+ +++||.++++++++|+ |++.+++|+
T Consensus 231 v~~l~~~~~G~~~~-v~v~i~v~~~~~~~e~----------------------------------------h~i~~~ie~ 269 (299)
T PRK09509 231 AHDLRTRQSGPTRF-IQLHLEMEDNLPLVQA----------------------------------------HMIADQVEQ 269 (299)
T ss_pred ceeeeeEeeCCeEE-EEEEEEECCCCCHHHH----------------------------------------HHHHHHHHH
Confidence 99999999999987 9999999999998877 678899999
Q ss_pred HHHhhCCCeeE-EEEEecC
Q 011644 456 EIQDLVPGIRH-VDIEAHN 473 (480)
Q Consensus 456 ~i~~~~P~i~~-v~iE~~~ 473 (480)
+|++++|+++. |++||.+
T Consensus 270 ~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 270 ALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred HHHHhCCCCEEEEEeCCCC
Confidence 99999998764 7778854
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=1.3e-45 Score=373.93 Aligned_cols=275 Identities=17% Similarity=0.188 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHH
Q 011644 137 SQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAV 216 (480)
Q Consensus 137 ~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~ 216 (480)
.+|.+++++++|++++++|+++|+++||.||+|||+||++|++++++++++.++++||||++|||||+|+|+++++++++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhcc
Q 011644 217 GIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMT 296 (480)
Q Consensus 217 ~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l 296 (480)
++++++ ++++++|++++++|.++.. .++++++++++++|.+++++.++ +++.++.+++++++| +.
T Consensus 97 ~l~~~~-~~i~~eai~~l~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~----~~~~~s~~l~a~~~h---------~~ 161 (312)
T PRK03557 97 ALVVIT-ILIVWEAIERFRTPRPVAG-GMMMAIAVAGLLANILSFWLLHH----GSEEKNLNVRAAALH---------VL 161 (312)
T ss_pred HHHHHH-HHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHHHHHHHhc----ccccCCHHHHHHHHH---------HH
Confidence 998875 5799999999998876654 45666777888889877766543 334567788998887 78
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-hcCCCcce
Q 011644 297 EDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFL-KNDPVVDA 375 (480)
Q Consensus 297 ~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i-~~~~gV~~ 375 (480)
.|++.+++++++++ +..++||+|+||++++++++++++.+++++|+++..|+|++|+++..++|++.+ ++.|+|.+
T Consensus 162 ~D~l~s~~vlv~~~---~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~ 238 (312)
T PRK03557 162 GDLLGSVGAIIAAL---IIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRN 238 (312)
T ss_pred HHHHHHHHHHHHHH---HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCcee
Confidence 89999998877653 345789999999999999999999999999999999999999888899998876 57999999
Q ss_pred eeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHH
Q 011644 376 LYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEK 455 (480)
Q Consensus 376 v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~ 455 (480)
+|++|+|+.|+..+ +++||+++++.. + |++.+++|+
T Consensus 239 vh~l~~~~~G~~~~-v~~hv~v~~~~~---~----------------------------------------~~i~~~i~~ 274 (312)
T PRK03557 239 VHHVHVWMVGEKPV-MTLHVQVIPPHD---H----------------------------------------DALLDRIQD 274 (312)
T ss_pred EEEEEEEEeCCeEE-EEEEEEECCCCC---H----------------------------------------HHHHHHHHH
Confidence 99999999998877 999999988741 2 467889999
Q ss_pred HHHhhCCCeeEEEEEecCC
Q 011644 456 EIQDLVPGIRHVDIEAHNP 474 (480)
Q Consensus 456 ~i~~~~P~i~~v~iE~~~~ 474 (480)
+++++++ +.+++|+++++
T Consensus 275 ~l~~~~~-i~~vtIh~e~~ 292 (312)
T PRK03557 275 YLMHHYQ-IEHATIQMEYQ 292 (312)
T ss_pred HHHHhCC-CCEEEEEeccC
Confidence 9999884 88877766644
No 5
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=355.43 Aligned_cols=277 Identities=20% Similarity=0.257 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHH
Q 011644 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISA 215 (480)
Q Consensus 136 ~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a 215 (480)
+.+|.+++++.+|+.++++|+++|++|||+||+||++|+++|+++.++++++.++++||++++|||||.|+|.+++++++
T Consensus 19 ~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~na 98 (296)
T COG1230 19 RNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNA 98 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhc
Q 011644 216 VGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVM 295 (480)
Q Consensus 216 ~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~ 295 (480)
+++++++ +++++||++|+++|+++.. ..+++++++++++|+++.+.+.+. +.++.++++.++| +
T Consensus 99 v~Li~~s-~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~-----~~~~lN~r~a~LH---------v 162 (296)
T COG1230 99 LLLIVVS-LLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG-----HEENLNMRGAYLH---------V 162 (296)
T ss_pred HHHHHHH-HHHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHHHhhCC-----CcccchHHHHHHH---------H
Confidence 9998875 6899999999999988877 567888899999999999887543 2357888888887 8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcce
Q 011644 296 TEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDA 375 (480)
Q Consensus 296 l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~ 375 (480)
++|+++++|+++++ +++.++||+|+||+++++|+++++..+++++|++..+|++..|+..+.+++++.+.+.|+|.+
T Consensus 163 l~D~Lgsv~vIia~---i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~ 239 (296)
T COG1230 163 LGDALGSVGVIIAA---IVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVAS 239 (296)
T ss_pred HHHHHHHHHHHHHH---HHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccc
Confidence 89999999999988 456889999999999999999999999999999999999999988999999999999999999
Q ss_pred eeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHH
Q 011644 376 LYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEK 455 (480)
Q Consensus 376 v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~ 455 (480)
+||+|+|..+++....++|+++++... . +...+++++
T Consensus 240 vhdlHvWsi~~~~~~~t~Hv~v~~~~~-~------------------------------------------~~~~~~~~~ 276 (296)
T COG1230 240 VHDLHVWSITGGEHALTLHVVVDEVAD-A------------------------------------------DAALDQIVR 276 (296)
T ss_pred eeecccCCCCCCceeEEEEEEecCccc-h------------------------------------------HHHHHHHHH
Confidence 999999999999888999999994421 0 125778888
Q ss_pred HHHhhCCCeeEEEEEecCCC
Q 011644 456 EIQDLVPGIRHVDIEAHNPV 475 (480)
Q Consensus 456 ~i~~~~P~i~~v~iE~~~~~ 475 (480)
.+.++| ++.|+.+|++++.
T Consensus 277 ~l~~~~-~I~hvTiQ~e~~~ 295 (296)
T COG1230 277 RLLEKY-GIEHVTIQLETEG 295 (296)
T ss_pred HHhhhc-CcceEEEEecCCC
Confidence 888777 9999999998764
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=4.5e-44 Score=354.77 Aligned_cols=266 Identities=22% Similarity=0.307 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011644 151 VFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNG 230 (480)
Q Consensus 151 l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~g~~~ii~ea 230 (480)
++++|+++|+++||.||+|||+||+.|++++++++++.+.++||||++|||||+|+|+++++++++++++. ++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~-~~~~~~~s 80 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVV-ALFILYEA 80 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999988875 46799999
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhccchhhHHHHHHHHHH
Q 011644 231 IQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGA 310 (480)
Q Consensus 231 i~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l~D~~~~~gviia~~ 310 (480)
++++++|++++...+++++++++++++.+++++.++. +++.+++.++++.+| ...|...+++++++..
T Consensus 81 i~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~s~~l~a~~~~---------~~~D~~~s~~vli~~~ 148 (268)
T TIGR01297 81 IERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV---GHRLGSLALRAAALH---------VLSDALSSVGVLIGAL 148 (268)
T ss_pred HHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHh---CccCCCHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 9999998766666677788888999999887776654 445778999999887 6778888888777653
Q ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEE
Q 011644 311 SLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFR 390 (480)
Q Consensus 311 gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~ 390 (480)
+..+ +|+|+||++++++++++++.++++++++...|+|.+|+++..++|++.+++.|+|.++|++|+|+.|++.+.
T Consensus 149 ---~~~~-~~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~ 224 (268)
T TIGR01297 149 ---LIYF-GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLF 224 (268)
T ss_pred ---HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEE
Confidence 3333 389999999999999999999999999999999999999999999999999999999999999999994444
Q ss_pred EEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEE
Q 011644 391 FKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIE 470 (480)
Q Consensus 391 v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE 470 (480)
+++||++++++++.|+ |++.+++|+++++++|++.+++++
T Consensus 225 v~~~v~v~~~~~~~~a----------------------------------------h~i~~~i~~~i~~~~~~v~~v~ih 264 (268)
T TIGR01297 225 LDVHVVVDPDLDLKQA----------------------------------------HDIALEIEREILKRHPGIEHVTIQ 264 (268)
T ss_pred EEEEEEECCCCChhHH----------------------------------------HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 9999999999998877 688999999999999999998887
Q ss_pred ecC
Q 011644 471 AHN 473 (480)
Q Consensus 471 ~~~ 473 (480)
+++
T Consensus 265 ~ep 267 (268)
T TIGR01297 265 VEP 267 (268)
T ss_pred eCC
Confidence 775
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=1e-41 Score=340.31 Aligned_cols=280 Identities=21% Similarity=0.242 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 011644 141 VTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFC 220 (480)
Q Consensus 141 l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~ 220 (480)
+++++++|++++++|+++|+++||.++++||+||+.|+++.++.+++.+.+.+|||++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhccchhh
Q 011644 221 LGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGA 300 (480)
Q Consensus 221 ~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l~D~~ 300 (480)
++ .++++++++++++++++..+.+.+.+++++++++.+++++.++..++. +..++.+++++.+ ...|.+
T Consensus 81 ~~-~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~s~~l~~~~~~---------~~~d~~ 149 (284)
T PF01545_consen 81 LG-LFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVGKRL-QRRSPALRADALH---------SLIDVL 149 (284)
T ss_dssp HH-HHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHHHHS----SHHHHHHHHH---------HHHHTS
T ss_pred hH-HHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhccccc-ccccccchhhhhh---------cccchh
Confidence 65 568999999999997777666666668889999999988887765542 2347888888876 455666
Q ss_pred HHHHHHHHHHHHHHHHhcCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcceeeeE
Q 011644 301 AVTGLVIAGASLIAVNVTGNAI-YDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDC 379 (480)
Q Consensus 301 ~~~gviia~~gl~l~~~~g~~~-~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~v~~l 379 (480)
.+++++++. ++..+.+|.| +||++++++++++++.+++++|++...|+|++|+++..+++++.+++.|+|.+++++
T Consensus 150 ~s~~v~i~~---~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~ 226 (284)
T PF01545_consen 150 SSLAVLISL---LLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDL 226 (284)
T ss_dssp -SSTS-SSS---TSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEE
T ss_pred HHHHHHHHH---HHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccce
Confidence 666666654 3445556766 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHh
Q 011644 380 KSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQD 459 (480)
Q Consensus 380 r~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~ 459 (480)
|+|+.|++.+.+++||.++|+++++++ |++.++||+.+++
T Consensus 227 ~~~~~g~~~~~v~i~v~v~~~~~v~~~----------------------------------------~~i~~~i~~~l~~ 266 (284)
T PF01545_consen 227 RVWQVGRNKYVVEIHVQVDPDMSVEEA----------------------------------------HEIRERIEKRLRE 266 (284)
T ss_dssp EEEEETT-EEEEEEEEEETTTSBHHHH----------------------------------------HHHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEEEEEeCCCCCHHHH----------------------------------------HHHHHHHHHHHHH
Confidence 999999955569999999999998877 5789999999999
Q ss_pred hCCCeeEEEEEecCC
Q 011644 460 LVPGIRHVDIEAHNP 474 (480)
Q Consensus 460 ~~P~i~~v~iE~~~~ 474 (480)
++|++.+++||+++.
T Consensus 267 ~~~~i~~v~I~~~p~ 281 (284)
T PF01545_consen 267 KFPGIYDVTIHIEPD 281 (284)
T ss_dssp HSTTCEEEEEEEEEC
T ss_pred hCCCcEEEEEEEEec
Confidence 999999966655543
No 8
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-35 Score=295.16 Aligned_cols=266 Identities=17% Similarity=0.183 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHH
Q 011644 133 TDEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSL 212 (480)
Q Consensus 133 ~~~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~al 212 (480)
+.+.++++.++++++|++++++|+++|+.+||+|++||++||+.|+++.+++++..+.+++|++.+||+|++|+|+++.+
T Consensus 109 ~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i 188 (412)
T KOG1485|consen 109 LKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLI 188 (412)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHH
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Q 011644 213 ISAVGIFCLGSGATIVNGIQHLWTAEAPE--------NMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIW 284 (480)
Q Consensus 213 i~a~~l~~~g~~~ii~eai~~L~~~~~~~--------~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~ 284 (480)
+++.++..+|. -++.+++.++..|.+.. ....+++++++++.+..+.++..++... +.++..+++.+|
T Consensus 189 ~~S~iMa~agv-~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~---~~ns~iv~a~A~ 264 (412)
T KOG1485|consen 189 AVSVIMAMAGV-QIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAI---KTNSNIVRANAW 264 (412)
T ss_pred HHHHHHHHHHH-HHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHH---hcCcHHHHHHHH
Confidence 99999888765 48899999888732211 1112234444444445544444443332 356788999999
Q ss_pred hcCCCCchhhccchhhHH-HHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 011644 285 RGHDPTSVAVMTEDGAAV-TGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKI 363 (480)
Q Consensus 285 ~~~d~~s~~v~l~D~~~~-~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I 363 (480)
|++ .|++.. +|++. +.+. ++.|+|+||+++++++.+++++|.+...+++..|+|+++||+.++++
T Consensus 265 dHr---------~D~lTn~vaLva----~~la-~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~ 330 (412)
T KOG1485|consen 265 DHR---------NDVLTNSVALVA----ASLA-YYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEII 330 (412)
T ss_pred HHH---------hHHHHHHHHHHH----HHHH-HhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHH
Confidence 854 343332 22222 2333 34578999999999999999999999999999999999999999998
Q ss_pred HHHHhcC-CCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHh
Q 011644 364 LHFLKND-PVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAA 423 (480)
Q Consensus 364 ~~~i~~~-~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~ 423 (480)
.....+. +.+..++.++.+++|..++ +++|++++++++++++ |++.|.+|+.+
T Consensus 331 ~~~~l~~~~~i~~idtv~~y~~g~~~~-Vev~ivl~~~~~l~~a------h~i~E~lq~~i 384 (412)
T KOG1485|consen 331 TYLILQHGKLIKHIDTVRAYTFGSHYF-VEVHIVLDEDLSLSVA------HDIGETLQKKI 384 (412)
T ss_pred HHHHHhhcCccccceeeeeecccceEE-EEEeeecCCCCccHHH------HHHHHHHHHHH
Confidence 8877664 4899999999999999998 9999999999999999 88877777544
No 9
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=278.28 Aligned_cols=265 Identities=13% Similarity=0.144 Sum_probs=219.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHH
Q 011644 132 TTDEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWS 211 (480)
Q Consensus 132 ~~~~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~a 211 (480)
....+.+|.++..+++|+.++.++++.|.+|||+++++|++|++.||.++++.+++..++++|++..|||||+|.|.+++
T Consensus 28 il~~~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLag 107 (354)
T KOG1484|consen 28 ILSDKDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAG 107 (354)
T ss_pred hccCcchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHH
Confidence 44555678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc---hhH-------
Q 011644 212 LISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKK--GAAAEG---MTI------- 279 (480)
Q Consensus 212 li~a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~--~~~~~s---~~l------- 279 (480)
+++++++.+. +.+++.|+++|+++|++..+ +..+++..+++++|++.++.+...... ++..++ ...
T Consensus 108 F~n~vflvl~-a~fi~~Es~eRl~~ppei~t-~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~ 185 (354)
T KOG1484|consen 108 FVNGVFLVLI-AFFIFSESVERLFDPPEIHT-NRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSL 185 (354)
T ss_pred HHHHHHHHHH-HHHHhHHHHHHhcCchhcCC-ceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccc
Confidence 9999998876 46799999999999866654 455677788899999988876543111 100000 000
Q ss_pred -HH-HHH-----------hcCCCCchhhccchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 011644 280 -RD-YIW-----------RGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRN 346 (480)
Q Consensus 280 -~a-~~~-----------~~~d~~s~~v~l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres 346 (480)
.. +.. +...+..+.+++.|.++++|++++. ++.+++||.++||+|+++|+++|+.+.++++|++
T Consensus 186 ~~~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist---~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s 262 (354)
T KOG1484|consen 186 LGVWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIIST---LLIKLFGWMIADPICSLLIAILIFLSVLPLLKYS 262 (354)
T ss_pred ccccccccccccccCCcccccccchhHHHHHHHhcchHHHHHH---HHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 1113577888999999999999987 6779999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHH---hcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCcc
Q 011644 347 RHALIGRAMDDHDMEKILHFL---KNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMV 402 (480)
Q Consensus 347 ~~~Llg~s~~~e~~~~I~~~i---~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~s 402 (480)
...||+++|| +..+.+.+.+ .+.+||.++.+.|+|+++++.++.++|++|.+|..
T Consensus 263 ~~iLLq~tPp-~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dad 320 (354)
T KOG1484|consen 263 GKILLQRTPP-HLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDAD 320 (354)
T ss_pred HHHHHhcCCh-hhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcc
Confidence 9999999865 5555555544 45889999999999999999888999999998854
No 10
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=276.36 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHH
Q 011644 137 SQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAV 216 (480)
Q Consensus 137 ~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~ 216 (480)
.+|.++++.++.+++++.|+++|+.+||+|+++||.|.++|+.+..+.+++++.+.|||+++..|||.|+|.+++++.-.
T Consensus 71 ~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~ 150 (379)
T KOG1482|consen 71 AERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVL 150 (379)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------chhHHH
Q 011644 217 GIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAE---------------GMTIRD 281 (480)
Q Consensus 217 ~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~---------------s~~l~a 281 (480)
.++++ .++++++|++|++++...-...++++++.+++++|.++.+++.+.. ++.++. +.+.++
T Consensus 151 ~IW~~-tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~-h~h~H~~~~s~g~~h~~~~~~n~nvra 228 (379)
T KOG1482|consen 151 LIWVV-TGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSG-HGHSHGGSHSHGHSHDHGEELNLNVRA 228 (379)
T ss_pred HHHHh-hhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccC-CCCCCCCCCCcCcccccccccchHHHH
Confidence 77766 5679999999999988444445677788889999999888876653 222221 256666
Q ss_pred HHHhcCCCCchhhccchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHH
Q 011644 282 YIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDME 361 (480)
Q Consensus 282 ~~~~~~d~~s~~v~l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~ 361 (480)
.+.| ++.|+..++|+.+++. +....++|.++||+|+++.+++++.+...++|+.+..||+.+|..-+..
T Consensus 229 AyiH---------VlGDliQSvGV~iaa~--Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~ 297 (379)
T KOG1482|consen 229 AFVH---------VLGDLIQSVGVLIAAL--IIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFD 297 (379)
T ss_pred HHHH---------HHHHHHHHHHHHhhhe--eEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHH
Confidence 6665 8999999999999874 2223457999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhH
Q 011644 362 KILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEE 441 (480)
Q Consensus 362 ~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~ 441 (480)
.+++.+..++||..||++|+|..+.++..+++||..+|+..-
T Consensus 298 ~~~~~l~~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~-------------------------------------- 339 (379)
T KOG1482|consen 298 KVKKGLLSIEGVKAVHDLHIWSITVGKVALSVHLAIDSEADA-------------------------------------- 339 (379)
T ss_pred HHHHHHhhhcceeEEEEEEEEEEecCceEEEEEEeecCCCCH--------------------------------------
Confidence 999999999999999999999999999999999999977421
Q ss_pred HHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCC
Q 011644 442 VVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVD 476 (480)
Q Consensus 442 v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~ 476 (480)
+++.+++-+.|+++| ++.++.+|.+++.+
T Consensus 340 -----~~vL~~~~~~i~~~~-~~~~vTiQie~~~~ 368 (379)
T KOG1482|consen 340 -----EEVLDEARSLIKRRY-GISHVTIQIEPYTE 368 (379)
T ss_pred -----HHHHHHHHHHHHhhc-ceEEEEEEecCCcc
Confidence 356777778888888 89998887776654
No 11
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.6e-28 Score=242.19 Aligned_cols=258 Identities=16% Similarity=0.154 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l 218 (480)
..++.-+++.++++++|++.|+.++|+||++|++|++.|+++.++++++++.+++.++.++|||+.|+|.++++++++++
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 44566678999999999999999999999999999999999999999999999997899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cccc-----------------
Q 011644 219 FCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKG------AAAE----------------- 275 (480)
Q Consensus 219 ~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~------~~~~----------------- 275 (480)
..+ ...++.||++|+++|+....+...+.+.+++++.|.+.++.++...... +...
T Consensus 89 ~al-c~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~ 167 (404)
T KOG1483|consen 89 TAL-CVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHA 167 (404)
T ss_pred HHH-HHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchhc
Confidence 655 4457789999999999988887777888889999999888775441000 0000
Q ss_pred ----------------chh--H----------------------HHH----HHhcC-----CCCchhhccchhhHHHHHH
Q 011644 276 ----------------GMT--I----------------------RDY----IWRGH-----DPTSVAVMTEDGAAVTGLV 306 (480)
Q Consensus 276 ----------------s~~--l----------------------~a~----~~~~~-----d~~s~~v~l~D~~~~~gvi 306 (480)
.++ + +.+ .-+++ +.+.+.+++.|+.+.++|+
T Consensus 168 ~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~Vi 247 (404)
T KOG1483|consen 168 IGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIVI 247 (404)
T ss_pred cCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEEE
Confidence 000 0 000 00000 1245667889999999998
Q ss_pred HHHHHHHHHHhcCCc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcceeeeEEEEE
Q 011644 307 IAGASLIAVNVTGNA---IYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEV 383 (480)
Q Consensus 307 ia~~gl~l~~~~g~~---~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~ 383 (480)
++++ +.+++.|. |+||+.++++.++++++++++.||+...|++.+|...+.+++.+.+.++|||.+|||+|+|+
T Consensus 248 ~~A~---~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWq 324 (404)
T KOG1483|consen 248 VSAL---FVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQ 324 (404)
T ss_pred EEEE---EEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeee
Confidence 8874 34555664 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEEEEEEEcCC
Q 011644 384 IGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 384 ~G~~~~~v~v~V~v~~~ 400 (480)
+...++..++||.++..
T Consensus 325 L~~~r~IAt~Hi~~~~p 341 (404)
T KOG1483|consen 325 LAGSRIIATIHIQIQNP 341 (404)
T ss_pred eccceEEEEEEEEecCc
Confidence 99998889999999643
No 12
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=198.02 Aligned_cols=257 Identities=13% Similarity=0.008 Sum_probs=206.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchhhHHHHHHH
Q 011644 134 DEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSR-RAPDALHPYGYSKERFVWSL 212 (480)
Q Consensus 134 ~~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~-r~~d~~~pfG~~R~E~l~al 212 (480)
...+++.+.+|++..++++...+++|+++||.+++-||++|+.|....++.+...|+.. +|.|.+||||++-+|++.-.
T Consensus 15 ~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ 94 (314)
T COG3965 15 SSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLA 94 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhh
Confidence 33468999999999999999999999999999999999999999999999999999777 78888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCch
Q 011644 213 ISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSV 292 (480)
Q Consensus 213 i~a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~ 292 (480)
+++..|..+ +.|.++.|+..+++|+..-.+.+++++.+++..++...++..+|..|+. .|.-+..+...
T Consensus 95 ing~ll~ll-~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~---~s~lIald~kq------- 163 (314)
T COG3965 95 INGTLLALL-CLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRL---KSPLIALDTKQ------- 163 (314)
T ss_pred hccHHHHHH-HHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccC---CCchhhhHHHH-------
Confidence 999998876 5689999999999998877778899988888888888887776654443 33333333221
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHhcCC----cccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 011644 293 AVMTEDGAAVTGLVIAGASLIAVNVTGN----AIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLK 368 (480)
Q Consensus 293 ~v~l~D~~~~~gviia~~gl~l~~~~g~----~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~ 368 (480)
|+=|++.+.++.++++.-++...|.| +|+||..-.+++++++...++.++.+.++++..+|+ |..+.|.....
T Consensus 164 --W~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~ 240 (314)
T COG3965 164 --WLMSTCLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAH 240 (314)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHH
Confidence 34466667777777765556555555 578999999999999999999999999999999877 66666655443
Q ss_pred cCC---CcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHH
Q 011644 369 NDP---VVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNY 406 (480)
Q Consensus 369 ~~~---gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~ea 406 (480)
+.. +..+. +..+-+.|++.+ +|+|..+|++..-++.
T Consensus 241 ~~v~k~~f~~~-~~yvArVGr~l~-IEi~fiip~~~~ar~V 279 (314)
T COG3965 241 EIVEKYGFPSY-HVYVARVGRGLF-IEIHFIIPRESDARNV 279 (314)
T ss_pred HHHHHhcCchH-HHHHHHhccceE-EEEEEEeCCccCCccc
Confidence 321 22222 233778999999 9999999988764444
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00015 Score=73.71 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHH
Q 011644 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVG 217 (480)
Q Consensus 138 ~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~ 217 (480)
--+..+++.+|..+.-.+.-.|--+||.+|.||+.|..+|+++++.+++|+- +. -+|+..++++++++.+++
T Consensus 120 ~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~-------~~g~~~lD~i~a~~I~~~ 191 (304)
T COG0053 120 LGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GS-------LLGWPWLDPLAALLISLY 191 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HH-------HhCcHHHHHHHHHHHHHH
Confidence 3556667777888888888889999999999999999999999999999998 42 368999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Q 011644 218 IFCLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 218 l~~~g~~~ii~eai~~L~~~~~~~ 241 (480)
|+-.| +.++++++..|++...++
T Consensus 192 Il~~~-~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 192 ILKTG-FRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHH-HHHHHHHHHHHhCcCCCH
Confidence 99876 458999999999854443
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.72 E-value=0.00024 Score=70.36 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l 218 (480)
-...+++++|++++..+.-.|-.++|.++.+|+.|++.|+++++.++++...+. ||+..++++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 455677788998888888888889999999999999999999999999998873 668899999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 011644 219 FCLGSGATIVNGIQHLWTAEAP 240 (480)
Q Consensus 219 ~~~g~~~ii~eai~~L~~~~~~ 240 (480)
+..+. .++++++..+++..+.
T Consensus 170 ~~~~~-~l~~~~~~~Ll~~~~~ 190 (268)
T TIGR01297 170 LYTAF-RLLKESINVLLDAAPD 190 (268)
T ss_pred HHHHH-HHHHHHHHHHhCCCCC
Confidence 87754 5889999999987653
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.68 E-value=0.00044 Score=70.03 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 011644 140 AVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIF 219 (480)
Q Consensus 140 ~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~ 219 (480)
...+++++|.++...+...+-.++|.++.+|+.|+..|+++++.+++++..+. +|+...+++++++.+++++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il 191 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYIL 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHH
Confidence 45566777888777777777789999999999999999999999999988762 5888999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q 011644 220 CLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 220 ~~g~~~ii~eai~~L~~~~~~~ 241 (480)
..+. .++++++..|++..+++
T Consensus 192 ~~~~-~i~~~~~~~Ll~~~~~~ 212 (299)
T PRK09509 192 YSAL-RMGYEAVQSLLDRALPD 212 (299)
T ss_pred HHHH-HHHHHHHHHHhccCCCH
Confidence 7654 58899999999865443
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=96.51 E-value=0.018 Score=58.71 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 011644 162 TSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 162 tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~g~~~ii~eai~~L~~~~~~~ 241 (480)
.+|.++.+|+.|...|+++++.++++...... +|+.-++++++++++++++..+. -++++++..|++..|++
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~-~l~~~~~~~Lld~~p~~ 219 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAW-RLLKESVNELLEGAPVS 219 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCC
Confidence 57889999999999999999998888766532 24445999999999999988754 58899999999876554
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=90.39 E-value=1.4 Score=46.37 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011644 153 SLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQ 232 (480)
Q Consensus 153 i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~g~~~ii~eai~ 232 (480)
.+-+..+..++|-.+.|-|.|=..|+++..++|++...+. |.++-+.+++++++++.++..++ -...+++.
T Consensus 245 ~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~~-~t~~~~i~ 315 (412)
T KOG1485|consen 245 RLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTGG-RTGLENIK 315 (412)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhhh-HHHHHHHH
Confidence 3333566778999999999999999999999999999983 45578999999999999888764 37789999
Q ss_pred HhhcC
Q 011644 233 HLWTA 237 (480)
Q Consensus 233 ~L~~~ 237 (480)
.|++.
T Consensus 316 ~Lvg~ 320 (412)
T KOG1485|consen 316 ELVGR 320 (412)
T ss_pred HHhCC
Confidence 99875
No 18
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=86.97 E-value=14 Score=37.48 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 011644 302 VTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 355 (480)
Q Consensus 302 ~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~ 355 (480)
.+|+++|.+...-....+.|++-++.++++.+++.+.++.+.-....+++--..
T Consensus 89 iiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~ 142 (356)
T COG4956 89 IIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLN 142 (356)
T ss_pred HHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcc
Confidence 445555543322235567899999999999999999999999887777776543
No 19
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=85.73 E-value=9.4 Score=31.74 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhh
Q 011644 360 MEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYG 439 (480)
Q Consensus 360 ~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~ 439 (480)
..+|.+++.++|++..-+.+.+.+-+...- +.+.|++.+..+-...
T Consensus 6 P~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~-l~v~vE~~~~~~~~~~--------------------------------- 51 (96)
T PF14535_consen 6 PSQIEEVLREFPEVSPEYQIVVTREGGLDE-LTVRVELRPGFSDDAE--------------------------------- 51 (96)
T ss_dssp HHHHHHHHCTSTTEEEEEEEEEEEETTEEE-EEEEEEESTTCCTTHH---------------------------------
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEcCCCCcE-EEEEEEECCccCcchH---------------------------------
Confidence 367899999999998888888888887655 8999999887531100
Q ss_pred hHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCC
Q 011644 440 EEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVP 478 (480)
Q Consensus 440 ~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~ 478 (480)
......++|++++++.. .+ .+.||..+++..|
T Consensus 52 -----~~~~l~~~i~~~lk~~l-gv-~~~V~lv~~gtLp 83 (96)
T PF14535_consen 52 -----DLEALAERIAERLKERL-GV-RPEVELVPPGTLP 83 (96)
T ss_dssp -----HHHHHHHHHHHHHHHHH-SS--EEEEEE-TT-S-
T ss_pred -----HHHHHHHHHHHHHHhhc-Cc-eEEEEEECCCCcc
Confidence 11456777888888775 33 3466666666555
No 20
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=85.43 E-value=0.85 Score=45.31 Aligned_cols=90 Identities=21% Similarity=0.124 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchh-hHHHHHHHHHHHH
Q 011644 141 VTTALWGNFLVFSLKFGVWLGTS--SHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYS-KERFVWSLISAVG 217 (480)
Q Consensus 141 l~~sl~~Nl~l~i~kl~~g~~tg--S~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~-R~E~l~ali~a~~ 217 (480)
..+++++|+++.....-.+--.+ |.++.+++.|++.|.+.++.++++.....-. +.. -++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 45566666666655555444455 9999999999999999998888877766432 222 4899999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 011644 218 IFCLGSGATIVNGIQHLWTAE 238 (480)
Q Consensus 218 l~~~g~~~ii~eai~~L~~~~ 238 (480)
++..+. -.+.+++..|++..
T Consensus 182 i~~~~~-~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGY-PLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHH-HHHHHHHHHHTT-S
T ss_pred Hhhhhh-hchhhhhccccccc
Confidence 887754 48899999998754
No 21
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=79.11 E-value=12 Score=37.91 Aligned_cols=93 Identities=15% Similarity=0.046 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l 218 (480)
-+..+++++|++.+..---. -..+.-+-+--+|.+.|.+.++.++++.-.... +|+....++.+++.++++
T Consensus 129 ~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~li 199 (296)
T COG1230 129 VVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALLI 199 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHH
Confidence 34445555665544432221 112577777789999999999888887655432 455558999999988887
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 011644 219 FCLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 219 ~~~g~~~ii~eai~~L~~~~~~~ 241 (480)
+.- +..++.++..-++++.|..
T Consensus 200 l~~-a~~l~k~s~~iLle~~P~~ 221 (296)
T COG1230 200 LSS-AWPLLKESLNILLEGVPEG 221 (296)
T ss_pred HHH-HHHHHHHHHHHHhhcCCCc
Confidence 764 4568899999999877644
No 22
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=76.52 E-value=70 Score=30.31 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=17.6
Q ss_pred CcccchhhHHHHHHHHHHHHHHH
Q 011644 320 NAIYDPIGSIIVGNLLGMVAIFL 342 (480)
Q Consensus 320 ~~~~Dpi~sliIa~lIl~~~~~l 342 (480)
.+.+||++-.+++..++..-+-+
T Consensus 190 N~~L~pi~l~IiGav~lalRfyl 212 (226)
T COG4858 190 NPQLPPIALTIIGAVILALRFYL 212 (226)
T ss_pred CcCCchHHHHHHHHHHHHHHHHH
Confidence 46799999999998887655443
No 23
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=72.77 E-value=24 Score=30.99 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=50.1
Q ss_pred CeEEEEEEEEEEcCC-----ccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 386 PGFFRFKAEIDFNGV-----MVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 386 ~~~~~v~v~V~v~~~-----~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
+..+.+++++.++.. -.+.++ -++-++.+.+++..+.+ .-. .++...++|=+.+.++
T Consensus 26 ~Q~~~Vdl~l~~d~~~A~~~Ddl~dt---l~Y~~v~~~i~~~v~~~------------~~~---LiE~lA~~ia~~l~~~ 87 (121)
T COG1539 26 GQKFVVDLTLGYDLRKAAESDDLADT---LNYAEVSELIKEIVEGK------------RFA---LIETLAEEIADLLLAR 87 (121)
T ss_pred CCeEEEEEEEeccchhhcCccchhhe---ecHHHHHHHHHHHHhCC------------ccc---hHHHHHHHHHHHHHhh
Confidence 344458888888762 122222 23344445554443332 222 4577888999999999
Q ss_pred CCCeeEEEEEecCCCCCCC
Q 011644 461 VPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 461 ~P~i~~v~iE~~~~~~~~~ 479 (480)
||.+..+.++.+.|..|+.
T Consensus 88 ~~~v~~~~v~v~KP~ap~~ 106 (121)
T COG1539 88 FPRVELVEVKVTKPKAPIP 106 (121)
T ss_pred CCccEEEEEEEECCCCCCC
Confidence 9999999999999888875
No 24
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=72.42 E-value=44 Score=38.95 Aligned_cols=110 Identities=13% Similarity=0.250 Sum_probs=67.2
Q ss_pred hHHHHHHHHhcCCCcceeeeEEEE------EEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcc-----
Q 011644 359 DMEKILHFLKNDPVVDALYDCKSE------VIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKD----- 427 (480)
Q Consensus 359 ~~~~I~~~i~~~~gV~~v~~lr~~------~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~----- 427 (480)
..+++.+.++++|+|..+..=--| -.|++ ..+-.|.+.|+- +.-++..++++.+++++..+...
T Consensus 578 m~~~~e~~ik~~PeV~~V~~k~GrAe~~tD~~~~n--~~et~I~Lkp~~---eW~~~~t~~~lie~l~~~~~~lpG~~~~ 652 (1027)
T COG3696 578 MLQAIERAIKKFPEVERVFGKTGRAETATDPAPLN--MIETFIELKPQE---EWKDKKTRDELIEELRKTLEQLPGLANS 652 (1027)
T ss_pred HHHHHHHHHhcCcchheeeeccccCCCCCCCCCcc--cceeeEEecchh---hCCCcccHHHHHHHHHHHHHhCCCcccc
Confidence 456677888889988776431111 12223 267778886652 23122356788888887765211
Q ss_pred -----hHHHHHHH---------hhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCC
Q 011644 428 -----DTALLKIM---------SNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPV 475 (480)
Q Consensus 428 -----~~~l~~~~---------~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~ 475 (480)
..+..+++ +-||.|+ .++.+..+.||+.++ ..|++..+.+|+..+.
T Consensus 653 ~tqPI~~R~delltGVrsdvaIKvfG~Dl-~~L~~la~qI~~~lk-~v~Ga~dv~~E~~~g~ 712 (1027)
T COG3696 653 FTQPIRMRIDELLTGVRSDLAIKVFGDDL-AELNELAEQIEEVLK-TVPGAVDVLAERQEGG 712 (1027)
T ss_pred cccchhHHHHHHHhccccceEEEEeCCCH-HHHHHHHHHHHHHHh-cCcchhhheeeecCCc
Confidence 11222222 2355554 467788889998887 7799988888887654
No 25
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=69.42 E-value=33 Score=31.64 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=46.1
Q ss_pred CCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHH
Q 011644 355 MDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKI 434 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~ 434 (480)
...+..++|.+.+.++|+| .+..+-..|...+ |-+.+..+...
T Consensus 72 ~~~~~a~~i~~~v~~~~~V---~~A~vvv~~~~a~-Vav~~~~~~~~--------------------------------- 114 (177)
T PF09580_consen 72 DRQQLADRIANRVKKVPGV---EDATVVVTDDNAY-VAVDLDFNRFN--------------------------------- 114 (177)
T ss_pred hHHHHHHHHHHHHhcCCCc---eEEEEEEECCEEE-EEEEecccccc---------------------------------
Confidence 3455667788888888755 5666777788866 66666522111
Q ss_pred HhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEe
Q 011644 435 MSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEA 471 (480)
Q Consensus 435 ~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~ 471 (480)
..++.++|++++++.+|.+.+|+|=.
T Consensus 115 -----------~~~i~~~V~~~v~~~~p~~~~V~Vs~ 140 (177)
T PF09580_consen 115 -----------TKKIKKKVEKAVKSADPRIYNVYVST 140 (177)
T ss_pred -----------hhHHHHHHHHHHHHhCCCccEEEEEc
Confidence 13456778888888888888888743
No 26
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=61.99 E-value=66 Score=27.60 Aligned_cols=33 Identities=9% Similarity=0.246 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
.++....+|=+.+...||.+.++.+.+..|+.|
T Consensus 71 llE~La~~ia~~i~~~~~~v~~v~v~v~K~~~~ 103 (118)
T cd00534 71 LIETLAEEIADILLEDYPKVSAIKVKVEKPNAP 103 (118)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEECCCCC
Confidence 567778888888888899999999999988877
No 27
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=59.89 E-value=88 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
.++...++|=+.+...||.+.+|.+.+..|+.|
T Consensus 70 llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~ap 102 (116)
T TIGR00525 70 LIETVAYRIADRLFADFPQVQRVKVRVSKPNAP 102 (116)
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEEEEeCCCC
Confidence 567888899999999999999999999888875
No 28
>PLN02601 beta-carotene hydroxylase
Probab=58.36 E-value=2.1e+02 Score=28.79 Aligned_cols=106 Identities=13% Similarity=-0.059 Sum_probs=47.8
Q ss_pred hcCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhccchhhHHHHHHHHHHHH
Q 011644 235 WTAEAPENMKYAA--LVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASL 312 (480)
Q Consensus 235 ~~~~~~~~~~~~~--~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l~D~~~~~gviia~~gl 312 (480)
+++++.+...+.. .+.+.+++.+.+..++.++..-.+ .++.-...++.|.--..=.+|..+.+--+++.+.+
T Consensus 123 ~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG------~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~ 196 (303)
T PLN02601 123 MKGGEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHD------SLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLL 196 (303)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchhhhhhcCCCCCCCcccccchhhhhHHHHHHHH
Confidence 3555544333222 233445666666666666665433 11111111223322223457877666555554333
Q ss_pred HHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 011644 313 IAVNV-TGNAIYDPIGSIIVGNLLGMVAIFLIQRNR 347 (480)
Q Consensus 313 ~l~~~-~g~~~~Dpi~sliIa~lIl~~~~~llres~ 347 (480)
.+... .|+.+.. ...+.+++.+...++.++-|.+
T Consensus 197 ~~G~~~~g~~p~~-~fgiGlGITlYGiaYffVHDgL 231 (303)
T PLN02601 197 YYGFFNKGLVPGL-CFGAGLGITVFGMAYMFVHDGL 231 (303)
T ss_pred HHhhccccccHHH-HHHHHHhHHHHHHHHHHHhhhh
Confidence 33222 1222111 1234566666666666666643
No 29
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=54.66 E-value=32 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 011644 183 LLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFC 220 (480)
Q Consensus 183 l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~ 220 (480)
..++|.-...|| ||||.|.+.+++.++++++
T Consensus 66 ~~li~~~~GmRP-------GYGr~E~~iG~iiA~l~~~ 96 (99)
T PF09877_consen 66 AFLIGFPLGMRP-------GYGRIETVIGLIIALLIYL 96 (99)
T ss_pred HHHHhhhccCCC-------CCCeehhhhhHHHHHHHHH
Confidence 344555566665 8999999999988777654
No 30
>PF02482 Ribosomal_S30AE: Sigma 54 modulation protein / S30EA ribosomal protein; InterPro: IPR003489 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the sigma-54 modulation protein family and the S30Ae family of ribosomal proteins which includes the light-repressed protein (lrtA) [].; GO: 0005488 binding, 0044238 primary metabolic process; PDB: 1L4S_A 1VOX_a 1VOV_a 3V2E_Y 3V2C_Y 1N3G_A 1VOS_a 1VOZ_a 1VOQ_a 1IMU_A ....
Probab=52.83 E-value=59 Score=26.46 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=39.8
Q ss_pred CHHhHHHHHHHHhc----CCCcceeeeEEEEE--EcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchH
Q 011644 356 DDHDMEKILHFLKN----DPVVDALYDCKSEV--IGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDT 429 (480)
Q Consensus 356 ~~e~~~~I~~~i~~----~~gV~~v~~lr~~~--~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~ 429 (480)
++...+.|.+.+.. .+.+.+++ +.+.. .++..+.+++.+.+++..-..+.
T Consensus 12 t~~l~~~i~~kl~kl~~~~~~i~~~~-V~l~~~~~~~~~~~v~i~i~~~~~~l~a~~----------------------- 67 (97)
T PF02482_consen 12 TDALREYIEEKLEKLERFFDDIIEAH-VTLSKEKSEGKGYRVEITIHVPGHVLVAEE----------------------- 67 (97)
T ss_dssp -HHHHHHHHHHHHHHHTTSSC-SEEE-EEEEEE--ETTEEEEEEEEEETTEEEEEEE-----------------------
T ss_pred CHHHHHHHHHHHHHHHhhcCCCeeEE-EEEEEeeccCCCEEEEEEEEeCCceEEEEE-----------------------
Confidence 44444445444433 34454433 44444 23444559999977665432222
Q ss_pred HHHHHHhhhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 430 ALLKIMSNYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 430 ~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
.+.++...+....+++|+.+++.
T Consensus 68 --------~~~d~~~Aid~a~dkl~rql~k~ 90 (97)
T PF02482_consen 68 --------SAEDLYAAIDEAFDKLERQLRKY 90 (97)
T ss_dssp --------EESSHHHHHHHHHHHHHHHHHHH
T ss_pred --------ecCCHHHHHHHHHHHHHHHHHHH
Confidence 13444556678888999988864
No 31
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=51.43 E-value=91 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=31.7
Q ss_pred HhHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 358 HDMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 358 e~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
.+.+++.+.+++ .|+-..++.....-++-+...+.+.+.++.+
T Consensus 17 vDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~ 60 (88)
T TIGR00489 17 VDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDA 60 (88)
T ss_pred cCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecC
Confidence 346666666655 4555678888888888888888999988766
No 32
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=51.08 E-value=45 Score=34.39 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 011644 172 VHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPEN 242 (480)
Q Consensus 172 lhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~g~~~ii~eai~~L~~~~~~~~ 242 (480)
+|-++|.+.++.++++..+-+ -||+.-++++++++.|+++|+. ..=++.++..-|+.-.|+..
T Consensus 212 LHVLaDtlgSvGviist~Li~-------~~gw~~aDpicsllIailIf~s-v~PL~k~s~~iLLq~tPp~~ 274 (354)
T KOG1484|consen 212 LHVLADTLGSVGVIISTLLIK-------LFGWMIADPICSLLIAILIFLS-VLPLLKYSGKILLQRTPPHL 274 (354)
T ss_pred HHHHHHHhcchHHHHHHHHHH-------hcCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChhh
Confidence 688899999888888877764 3899999999999999988764 33367888888887665543
No 33
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=50.50 E-value=82 Score=27.14 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHcCCCCCH-----HhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEE
Q 011644 347 RHALIGRAMDD-----HDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDF 397 (480)
Q Consensus 347 ~~~Llg~s~~~-----e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v 397 (480)
+..|+|...++ +....|++++...|.+.+|.++.+..-|.... ++++|..
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~-v~f~V~t 107 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEWEGDSLY-VSFTVTT 107 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCEEE-EEEEEEE
Confidence 55788874443 34567888889999999999999988887765 7777754
No 34
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=50.02 E-value=93 Score=26.71 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPV 475 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~ 475 (480)
.++...++|=+.+...||.+.+|.+.+..|.
T Consensus 71 llE~la~~ia~~i~~~~~~v~~v~v~v~Kp~ 101 (118)
T TIGR00526 71 LIETLAKSVSEVVLDDYQKVTEVELEVSKPK 101 (118)
T ss_pred hHHHHHHHHHHHHHHhCCCceEEEEEEECCc
Confidence 5577888888899999999999999998887
No 35
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=47.34 E-value=86 Score=27.01 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=22.9
Q ss_pred CCHHhHHHHHHHHhc----CCCcceeeeEEEEEEcCeEEEEEEEEEEcCCc
Q 011644 355 MDDHDMEKILHFLKN----DPVVDALYDCKSEVIGPGFFRFKAEIDFNGVM 401 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~----~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~ 401 (480)
+.+...+.|.+.+.+ .+.+.++ ++.+..-+.. +.+++.+.+++..
T Consensus 12 ~tdalr~~ie~Kl~kL~k~~~~i~~~-~V~l~~e~~~-~~veitv~~~g~~ 60 (113)
T PRK10324 12 ITPAIRQHVADRLAKLEKWQTHLINP-HIILSKEPQG-FVADATINTPNGV 60 (113)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCceE-EEEEEEcCCC-eEEEEEEECCCCe
Confidence 344455555544433 4445444 2333333333 4488888887654
No 36
>PRK10470 ribosome hibernation promoting factor HPF; Provisional
Probab=46.72 E-value=1.1e+02 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=15.4
Q ss_pred hHHHHhhhHHHHHHHHHHHhh
Q 011644 440 EEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 440 ~~v~~~~~~~~~rIE~~i~~~ 460 (480)
++...++....+++|+.|++.
T Consensus 68 ~d~y~Aid~a~~klerqL~k~ 88 (95)
T PRK10470 68 QDMYAAIDGLIDKLARQLTKH 88 (95)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 344456678899999999864
No 37
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=46.21 E-value=1.3e+02 Score=27.71 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=42.1
Q ss_pred HhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhh
Q 011644 358 HDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSN 437 (480)
Q Consensus 358 e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~ 437 (480)
+.-++|.+.+.++| +|.+..+--+|...+ |-+ .++... +..
T Consensus 54 ~~A~~Ia~~v~~v~---~V~dA~vvVtg~~A~-Vgv--~~~~~~--~~~------------------------------- 94 (158)
T TIGR02898 54 DVADEIASEAAKVK---GVKDATVVITGNYAY-VGV--DLTNGL--EGS------------------------------- 94 (158)
T ss_pred HHHHHHHHHHhcCC---CCceEEEEEECCEEE-EEE--EcCCCc--chh-------------------------------
Confidence 44556666666666 566778888898866 333 333331 111
Q ss_pred hhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEe
Q 011644 438 YGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEA 471 (480)
Q Consensus 438 ~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~ 471 (480)
...++-.++++++++..|.+.+|+|-.
T Consensus 95 -------~~~~iK~~Va~~Vk~~dp~~~~VyVsa 121 (158)
T TIGR02898 95 -------VTDELKEKVAETVKSTDNRIANVYVSA 121 (158)
T ss_pred -------hHHHHHHHHHHHHHhhCCCcceEEEEc
Confidence 113455678888888889998888743
No 38
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=44.34 E-value=1.8e+02 Score=24.01 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=47.0
Q ss_pred HhHHHHHHHH-hcCCC--cceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHH
Q 011644 358 HDMEKILHFL-KNDPV--VDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKI 434 (480)
Q Consensus 358 e~~~~I~~~i-~~~~g--V~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~ 434 (480)
.+++++.+.+ ++++. ..=.+..+.-..|-+...+.+.+.++.+.
T Consensus 15 ~Dl~~l~~~Ik~~i~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~--------------------------------- 61 (89)
T PF00736_consen 15 TDLEKLEKKIKRKIPMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDE--------------------------------- 61 (89)
T ss_dssp S-HHHHHHHHHHHS-TTTEEEEEEEEEEEECTTEEEEEEEEEECTTT---------------------------------
T ss_pred ccHHHHHHHHHHhchhcceeeeeeeeeeeecccEEEEEEEEEEEcCc---------------------------------
Confidence 3566676666 44543 22256788888998887889999887652
Q ss_pred HhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEe
Q 011644 435 MSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEA 471 (480)
Q Consensus 435 ~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~ 471 (480)
--.+.+|..|....++++.++++-
T Consensus 62 -------------~~~d~lee~i~~~~e~Vqsvei~~ 85 (89)
T PF00736_consen 62 -------------GSTDDLEEAIESFEEGVQSVEIES 85 (89)
T ss_dssp -------------CGHHHHHHHHTTCTTTEEEEEEEE
T ss_pred -------------cChHHHHHHHHhcCCCccEEEEEE
Confidence 136677888866788899988874
No 39
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=43.40 E-value=1.3e+02 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred HhHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 358 HDMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 358 e~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
.+++++.+.+++ .|.-..+...+.--.+-+...+.+.+.++.+
T Consensus 17 ~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~ 60 (88)
T PRK00435 17 VDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDE 60 (88)
T ss_pred cCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcC
Confidence 346666666655 4555567888888888887778888888765
No 40
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=41.91 E-value=91 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 011644 194 APDALHPYGYSKERFVWSLISAVGIFCLG 222 (480)
Q Consensus 194 ~~d~~~pfG~~R~E~l~ali~a~~l~~~g 222 (480)
+...++..+..+.|.+++.+-++++++++
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~ 78 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLA 78 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHH
Confidence 44556778888899999999988876654
No 41
>TIGR00741 yfiA ribosomal subunit interface protein. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes.
Probab=41.32 E-value=1.5e+02 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=16.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHhh
Q 011644 439 GEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 439 ~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
+++....++...+++|+.|++.
T Consensus 67 ~~d~~~Aid~a~~klerql~k~ 88 (95)
T TIGR00741 67 HEDMYAAIDLAIDKLERQLRKL 88 (95)
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 3445556788889999988864
No 42
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=38.78 E-value=1.1e+02 Score=27.38 Aligned_cols=23 Identities=13% Similarity=-0.292 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 011644 142 TTALWGNFLVFSLKFGVWLGTSS 164 (480)
Q Consensus 142 ~~sl~~Nl~l~i~kl~~g~~tgS 164 (480)
.+++++|++++++-..++.+..+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~ 100 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWA 100 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677899998888765555443
No 43
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=38.37 E-value=1.5e+02 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
.++...++|=+.+.+.+|.+.++.++++.|..-
T Consensus 68 llE~la~~i~~~i~~~~~~v~~v~v~v~Kp~a~ 100 (113)
T PF02152_consen 68 LLETLAERIADRILKEFPQVQSVTVKVRKPSAI 100 (113)
T ss_dssp SHHHHHHHHHHHHHHHTTTESEEEEEEEETTSS
T ss_pred cHHHHHHHHHHHHHHhCCCccEEEEEEECCccC
Confidence 567888999999999999999999999887763
No 44
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=37.88 E-value=66 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhhCCCee-EEEEEec
Q 011644 446 LGTEVDRLEKEIQDLVPGIR-HVDIEAH 472 (480)
Q Consensus 446 ~~~~~~rIE~~i~~~~P~i~-~v~iE~~ 472 (480)
+..+...++++|..+||++. +|.|-+-
T Consensus 18 ~~AL~~EL~kRl~~~fPd~~~~v~Vr~~ 45 (81)
T PRK10597 18 IDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_pred HHHHHHHHHHHHHhhCCCCCccEEEeec
Confidence 35667789999999999997 6777664
No 45
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=35.81 E-value=2e+02 Score=24.72 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
.++....+|=+.+.+.|| +.++.+++..|..|++
T Consensus 71 LlE~la~~ia~~i~~~~~-~~~v~v~v~Kp~a~~~ 104 (119)
T PRK11593 71 LVERVAEEVAELLLARFN-SPWVRIKLSKPGAVAR 104 (119)
T ss_pred cHHHHHHHHHHHHHhhCC-CcEEEEEEECCCCCCc
Confidence 457778888888888886 4889999988887763
No 46
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=35.76 E-value=2.5e+02 Score=23.19 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=28.8
Q ss_pred hHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 359 DMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 359 ~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
.++++.+.+++ .+.-......+....|-+...+.+.+.++.+
T Consensus 18 Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~ 60 (88)
T cd00292 18 DLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDD 60 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeC
Confidence 45556555555 3444567788888888887778888888554
No 47
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.63 E-value=3.9e+02 Score=25.31 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=14.7
Q ss_pred cccchhhHHHHHHHHHHHHH
Q 011644 321 AIYDPIGSIIVGNLLGMVAI 340 (480)
Q Consensus 321 ~~~Dpi~sliIa~lIl~~~~ 340 (480)
+.+.|...++||++.+..-+
T Consensus 176 p~l~~~~~iiig~i~~~~~~ 195 (206)
T PF06570_consen 176 PVLPPWVYIIIGVIAFALRF 195 (206)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 56788888888877665443
No 48
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=35.09 E-value=5.1e+02 Score=26.50 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHH
Q 011644 171 VVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVW 210 (480)
Q Consensus 171 alhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ 210 (480)
.++..+|..-..+.+++.-.+---.--.+||||--+--+.
T Consensus 114 ~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~ 153 (303)
T COG1575 114 ILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIF 153 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHH
Confidence 3444455554444444444433222344788886653333
No 49
>COG1544 Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
Probab=33.89 E-value=1.7e+02 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=14.5
Q ss_pred hHHHHhhhHHHHHHHHHHHhh
Q 011644 440 EEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 440 ~~v~~~~~~~~~rIE~~i~~~ 460 (480)
++....+..++++||+.+++.
T Consensus 70 ~d~YaAID~a~dKLerqlrK~ 90 (110)
T COG1544 70 EDMYAAIDLAIDKLERQLRKH 90 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888753
No 50
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=33.56 E-value=2.8e+02 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
.++....+|=+.+.. +|.+.++.+.+..|..|+.
T Consensus 75 llE~la~~Ia~~i~~-~~~v~~v~v~v~Kp~a~~~ 108 (120)
T PRK11245 75 LLEKLTQDVLDIARE-HPWVTYAEVEIDKPHALRF 108 (120)
T ss_pred hHHHHHHHHHHHHHc-cCCccEEEEEEECCCCCCc
Confidence 445666666666664 7999999999998887764
No 51
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=32.06 E-value=1.3e+02 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=16.1
Q ss_pred hhHHHHhhhHHHHHHHHHHHhh
Q 011644 439 GEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 439 ~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
+.++...+....+++|+.|++.
T Consensus 69 ~~d~~~Aid~a~~kl~rqL~k~ 90 (93)
T cd00552 69 AEDLYAAIDLAVDKLERQLRKY 90 (93)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 3445556778899999999864
No 52
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=31.84 E-value=7.2e+02 Score=27.26 Aligned_cols=24 Identities=4% Similarity=-0.358 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGT 162 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~t 162 (480)
-..+.++..|+.-.+.-.++|++-
T Consensus 140 A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHH
Confidence 344556666776666655665543
No 53
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=31.44 E-value=28 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHcCCCCCHHhHHHHHHHHhcCCCcceeee
Q 011644 349 ALIGRAMDDHDMEKILHFLKNDPVVDALYD 378 (480)
Q Consensus 349 ~Llg~s~~~e~~~~I~~~i~~~~gV~~v~~ 378 (480)
.|.|..++++..+.+.+.+.+++||.+|+|
T Consensus 29 ~L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 29 TLSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 467888899999999999999999999876
No 54
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=30.97 E-value=4.8e+02 Score=25.03 Aligned_cols=27 Identities=22% Similarity=-0.100 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011644 140 AVTTALWGNFLVFSLKFGVWLGTSSHV 166 (480)
Q Consensus 140 ~l~~sl~~Nl~l~i~kl~~g~~tgS~A 166 (480)
-..+++.+-+++.++|.++-++..|.+
T Consensus 7 pf~~al~~vl~lg~lE~i~l~~G~s~s 33 (202)
T PF07290_consen 7 PFSIALALVLLLGVLEIIGLLFGLSLS 33 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 456777788889999998877776643
No 55
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=27.40 E-value=3.5e+02 Score=22.24 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 011644 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPY 201 (480)
Q Consensus 136 ~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pf 201 (480)
.+++++...+..-+...+.-+..... .+...+.-.+-.+.-+...+...++...+.+..+.+||+
T Consensus 40 ha~qal~~~i~~~i~~~i~~~l~~~~-~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 40 HAKQALNFQITFLIISIILFILSFIL-IFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 34455544444333333333333222 111223333444444555667777788888877777775
No 56
>PRK00907 hypothetical protein; Provisional
Probab=27.06 E-value=3.6e+02 Score=22.48 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred cCCCCCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEc
Q 011644 351 IGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFN 398 (480)
Q Consensus 351 lg~s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~ 398 (480)
+|.+ .++..+.|.+++++...-.+-..+..+....+.| .++.|.+.
T Consensus 23 mG~a-~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY-~Svtv~i~ 68 (92)
T PRK00907 23 MGTA-ERGLETELPRLLAATGVELLQERISWKHSSSGKY-VSVRIGFR 68 (92)
T ss_pred EEcC-chhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEE-EEEEEEEE
Confidence 4543 5678889999998743223456677788877777 55555554
No 57
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=27.03 E-value=1.1e+02 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhCCCeeEEEEEecCCCC
Q 011644 447 GTEVDRLEKEIQDLVPGIRHVDIEAHNPVD 476 (480)
Q Consensus 447 ~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~ 476 (480)
.+..++|-++|.+++|+|.+|.+...++++
T Consensus 59 ~~~L~~is~~I~n~v~~V~RV~yDiT~KPP 88 (93)
T PF00958_consen 59 WELLEEISSRITNEVPGVNRVVYDITSKPP 88 (93)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEE---BTT
T ss_pred HHHHHHHHHHHHHcCCCccEEEEeccCCCC
Confidence 467888999999999999999998877643
No 58
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=8.5e+02 Score=27.13 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011644 208 FVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLV 263 (480)
Q Consensus 208 ~l~ali~a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~ 263 (480)
.+.+++.++.++.. .+++...+..++.++......+.+..+++.+++-.++-+.
T Consensus 6 ~ll~~l~~i~~i~q--a~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~ 59 (559)
T COG4988 6 ALLAVLSGIAIIAQ--AALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWL 59 (559)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554432 3577788999998765333333333444445554444433
No 59
>PRK02047 hypothetical protein; Provisional
Probab=25.20 E-value=3.8e+02 Score=22.10 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=28.5
Q ss_pred CHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEc
Q 011644 356 DDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFN 398 (480)
Q Consensus 356 ~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~ 398 (480)
.++..+.|.+++..+..-.+...+..+....+.| .++.|.+.
T Consensus 26 ~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY-~Svtv~v~ 67 (91)
T PRK02047 26 HPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNY-TGLTITVR 67 (91)
T ss_pred cHhHHHHHHHHHHHhCCCCccCceEEccCCCCeE-EEEEEEEE
Confidence 4567888888887764433456678888887877 55555543
No 60
>COG4035 Predicted membrane protein [Function unknown]
Probab=25.01 E-value=90 Score=26.09 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 011644 173 HSVADFANQV-LLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCL 221 (480)
Q Consensus 173 hSl~D~~s~~-l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l~~~ 221 (480)
.|+.|.+=.+ ..+++.....|| ||||.|++.+-+.++.+++.
T Consensus 62 ~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 62 RSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred cCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHHh
Confidence 3344433333 455666666666 89999999886666665543
No 61
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65 E-value=3.2e+02 Score=22.99 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=36.9
Q ss_pred EEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH
Q 011644 379 CKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQ 458 (480)
Q Consensus 379 lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~ 458 (480)
+++.+.-.+.+..+++|.--...++.+. +++| ++ +=....+++.+.|+
T Consensus 39 lrV~r~Ed~~~fc~I~vl~vspvtld~l---~e~H-------------------------Ae----QEnm~L~eLk~vI~ 86 (106)
T COG3097 39 LRVGRFEDDRYFCTIEVLAVSPVTLDEL---TEKH-------------------------AE----QENMTLPELKKVIA 86 (106)
T ss_pred EEEEEecCCcEEEEEEEEEeccEehhhh---hhhh-------------------------hh----hhcCCcHHHHHHHH
Confidence 6666666665547777766555565544 1111 11 01345788999999
Q ss_pred hhCCCeeEEE
Q 011644 459 DLVPGIRHVD 468 (480)
Q Consensus 459 ~~~P~i~~v~ 468 (480)
+-||+....+
T Consensus 87 eIYP~~d~fy 96 (106)
T COG3097 87 EIYPNQDQFY 96 (106)
T ss_pred HHCCCCcEEE
Confidence 9999998855
No 62
>PF15050 SCIMP: SCIMP protein
Probab=24.43 E-value=1.2e+02 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 011644 249 VICGSFIIEGASLLVAIQAVKKGAA 273 (480)
Q Consensus 249 v~~isliv~~~~~~~~~r~~~~~~~ 273 (480)
++++|+++-+++++++++..|+|++
T Consensus 16 II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4455666677778888888888764
No 63
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=24.10 E-value=9.4e+02 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 011644 304 GLVIAGASLIAVNV-TGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 355 (480)
Q Consensus 304 gviia~~gl~l~~~-~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~ 355 (480)
+.++|..|.++.+. ++....|....++-+.++...+.-.+---...|.|-.|
T Consensus 408 ~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll~GLaP 460 (536)
T COG3559 408 ATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLLFGLAP 460 (536)
T ss_pred HHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHHhccch
Confidence 34445555555443 46667788888888777766665555555556666554
No 64
>PRK14647 hypothetical protein; Provisional
Probab=23.46 E-value=5.7e+02 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=24.1
Q ss_pred ceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHH
Q 011644 374 DALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNY 406 (480)
Q Consensus 374 ~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~ea 406 (480)
..+.++.....|...+ +.+.|+=+...++.+.
T Consensus 23 ~~L~dv~~~~~~~~~~-lrV~ID~~~gvslddC 54 (159)
T PRK14647 23 LELVELEYKREGREMV-LRLFIDKEGGVNLDDC 54 (159)
T ss_pred CEEEEEEEEecCCCeE-EEEEEeCCCCCCHHHH
Confidence 4788888888888776 7777776666776655
No 65
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=23.14 E-value=5.6e+02 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=26.6
Q ss_pred HHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHH
Q 011644 363 ILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNY 406 (480)
Q Consensus 363 I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~ea 406 (480)
+...+.+. | ..+.++.....|+... +.+.|+-+...++.+.
T Consensus 13 ~~~~~~~~-g-~~l~dv~~~~~~~~~~-l~V~Id~~~gv~iddc 53 (154)
T PRK00092 13 IEPVVEAL-G-YELVDVEYVKEGRDST-LRIYIDKEGGIDLDDC 53 (154)
T ss_pred HHHHHHHC-C-CEEEEEEEEecCCCcE-EEEEEECCCCCCHHHH
Confidence 33444443 3 3688999888887776 7777765555665554
No 66
>PRK11380 hypothetical protein; Provisional
Probab=22.20 E-value=8.9e+02 Score=25.27 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=10.9
Q ss_pred hcCCCCCCCCC-chhh
Q 011644 191 SRRAPDALHPY-GYSK 205 (480)
Q Consensus 191 s~r~~d~~~pf-G~~R 205 (480)
-..|-+++||+ ||.-
T Consensus 7 qn~p~~~~~~~~~~~~ 22 (353)
T PRK11380 7 QNHPGSEKYPVNGWEI 22 (353)
T ss_pred hcCCCcccCCcchhhh
Confidence 45788999998 5544
No 67
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.14 E-value=5.4e+02 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011644 203 YSKERFVWSLISAVGIFCLGSGATIVNGIQHLWT 236 (480)
Q Consensus 203 ~~R~E~l~ali~a~~l~~~g~~~ii~eai~~L~~ 236 (480)
+..-|.+++++..+.+..++.+..=+.-+++.+.
T Consensus 53 ~~~r~~lg~fii~~gil~~a~g~~r~~~~~~amr 86 (120)
T COG2149 53 PVIRELLGVFLILVGILLAALGALRWQRVERAMR 86 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888877776665544333444444444
No 68
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.71 E-value=6.3e+02 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=24.5
Q ss_pred ceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHH
Q 011644 374 DALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNY 406 (480)
Q Consensus 374 ~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~ea 406 (480)
.++.++...+.|++.+ +.+.++=+..+++++.
T Consensus 23 ~ELv~ve~~~~~~~~~-lrI~id~~g~v~lddC 54 (153)
T COG0779 23 FELVDVEFVKEGRDSV-LRIYIDKEGGVTLDDC 54 (153)
T ss_pred cEEEEEEEEEcCCCcE-EEEEeCCCCCCCHHHH
Confidence 4788999999998876 6777766677777765
No 69
>PRK14634 hypothetical protein; Provisional
Probab=21.58 E-value=6.2e+02 Score=23.05 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=23.6
Q ss_pred ceeeeEEEEEEcCeEEEEEEEEEEcCC--ccHHHH
Q 011644 374 DALYDCKSEVIGPGFFRFKAEIDFNGV--MVVQNY 406 (480)
Q Consensus 374 ~~v~~lr~~~~G~~~~~v~v~V~v~~~--~sv~ea 406 (480)
.++.++...+-|...+ +.+.|+=+.. .++.+.
T Consensus 22 ~elvdve~~~~~~~~~-lrV~ID~~~g~~v~lddC 55 (155)
T PRK14634 22 FELCGIQVLTHLQPMT-LQVQIRRSSGSDVSLDDC 55 (155)
T ss_pred CEEEEEEEEeCCCCcE-EEEEEECCCCCcccHHHH
Confidence 4688999888888776 7777776555 666655
No 70
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=21.24 E-value=5.1e+02 Score=21.94 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhc
Q 011644 326 IGSIIVGNLLGMVAIFLIQRNRHALIG-RAMDDHDMEKILHFLKN 369 (480)
Q Consensus 326 i~sliIa~lIl~~~~~llres~~~Llg-~s~~~e~~~~I~~~i~~ 369 (480)
.+.++++.+.+..+.-++.-..+.+-. ..++++..+++++.+..
T Consensus 73 ~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~d~~~ 117 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKEDIAA 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 566667777666777677666777763 45667788888877654
No 71
>PRK14635 hypothetical protein; Provisional
Probab=21.13 E-value=6.5e+02 Score=23.08 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEE----cCCccHHHH
Q 011644 354 AMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDF----NGVMVVQNY 406 (480)
Q Consensus 354 s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v----~~~~sv~ea 406 (480)
+|+++.+..+.+-+... | .++.++.+...|+..+ +.+.|+= ++..++.+.
T Consensus 2 ~~~~~~i~~l~~~~~~~-g-~el~dve~~~~~~~~~-lrV~ID~~~~~~~gv~lddC 55 (162)
T PRK14635 2 TVSEEEISEILDRVLAL-P-VKLYSLKVNQRPNHSL-IEVVLDNLEHPYGSVSLLEC 55 (162)
T ss_pred CCcHHHHHHHHHHHHCC-C-CEEEEEEEEecCCCcE-EEEEEecCCCCCCCcCHHHH
Confidence 35555555554333342 4 4788999888887766 6777753 123565554
No 72
>PRK14646 hypothetical protein; Provisional
Probab=20.88 E-value=6.3e+02 Score=23.00 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=23.1
Q ss_pred ceeeeEEEEEEcCeEEEEEEEEEEcC--CccHHHH
Q 011644 374 DALYDCKSEVIGPGFFRFKAEIDFNG--VMVVQNY 406 (480)
Q Consensus 374 ~~v~~lr~~~~G~~~~~v~v~V~v~~--~~sv~ea 406 (480)
.++.++...+-|...+ +.+.|+=+. .+++.+.
T Consensus 22 ~eLvdve~~~~~~~~~-LrV~IDk~~g~gVtldDC 55 (155)
T PRK14646 22 LKICSLNIQTNQNPIV-IKIIIKKTNGDDISLDDC 55 (155)
T ss_pred CEEEEEEEEeCCCCeE-EEEEEECCCCCCccHHHH
Confidence 5788999888888776 777776542 3676655
No 73
>PRK10132 hypothetical protein; Provisional
Probab=20.05 E-value=3.1e+02 Score=23.60 Aligned_cols=43 Identities=7% Similarity=0.210 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHh
Q 011644 412 REAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQD 459 (480)
Q Consensus 412 ~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~ 459 (480)
.+++.++|+..+ .+++.+++..+.+.-.+++...+++|..+..
T Consensus 14 ~e~L~~Dl~~L~-----~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ 56 (108)
T PRK10132 14 VQDIQNDVNQLA-----DSLESVLKSWGSDAKGEAEAARRKAQALLKE 56 (108)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 355566666544 4567777777777766777777777777654
No 74
>COG2056 Predicted permease [General function prediction only]
Probab=20.03 E-value=1e+03 Score=25.22 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 011644 243 MKYAALVICGSFIIEGASLLVA-IQAVKKG 271 (480)
Q Consensus 243 ~~~~~~v~~isliv~~~~~~~~-~r~~~~~ 271 (480)
.+.++++..+++++-+...++. +|..|.+
T Consensus 190 V~~am~ip~lgMi~GLl~ai~~~YrKpReY 219 (444)
T COG2056 190 VPKAMWIPGLGMIVGLLLAIFVSYRKPREY 219 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3455666666666655444443 3333333
Done!