Query 011644
Match_columns 480
No_of_seqs 257 out of 1664
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 7.9E-51 2.7E-55 409.9 16.2 285 135-477 9-294 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 2.3E-50 7.9E-55 402.2 18.6 278 138-474 3-280 (283)
3 3byp_A CZRB protein; membrane 99.4 8.3E-13 2.8E-17 109.2 11.3 83 349-473 1-85 (94)
4 2zzt_A Putative uncharacterize 99.3 4.2E-12 1.5E-16 107.9 9.9 82 351-473 1-84 (107)
5 3h90_A Ferrous-iron efflux pum 96.2 0.0018 6E-08 63.6 2.3 94 139-241 112-205 (283)
6 3j1z_P YIIP, cation efflux fam 95.9 0.0028 9.5E-08 63.0 2.5 94 139-241 121-214 (306)
7 1dhn_A DHNA, 7,8-dihydroneopte 69.6 15 0.00052 30.7 7.6 89 374-477 5-104 (121)
8 1z9w_A DHNA, dihydroneopterin 69.4 19 0.00067 30.6 8.4 74 384-477 25-103 (133)
9 1sql_A Dihydroneopterin aldola 65.9 16 0.00055 31.8 7.2 91 372-477 22-123 (146)
10 1nbu_A DHNA, probable dihydron 65.2 18 0.00062 30.1 7.2 87 375-477 6-103 (119)
11 3lax_A Phenylacetate-coenzyme 54.5 79 0.0027 25.0 9.7 42 360-402 16-57 (109)
12 2o90_A DHNA, dihydroneopterin 53.1 38 0.0013 28.2 7.2 78 386-479 25-104 (122)
13 4fyl_A Ribosome hibernation pr 50.3 54 0.0019 25.9 7.4 73 355-460 12-88 (95)
14 3o1k_A Dihydroneopterin aldola 50.1 30 0.001 29.4 6.1 92 372-479 17-119 (132)
15 2yy3_A Elongation factor 1-bet 50.0 95 0.0032 24.7 8.6 42 359-400 20-62 (91)
16 3v9o_A Dihydroneopterin aldola 49.3 23 0.00079 30.6 5.3 34 445-479 93-126 (143)
17 2cg8_A Dihydroneopterin aldola 43.6 63 0.0021 30.9 7.9 88 375-477 5-103 (270)
18 1imu_A Hypothetical protein HI 37.3 79 0.0027 25.5 6.5 73 355-460 12-88 (107)
19 3v2c_Y Ribosome-associated inh 36.8 80 0.0027 26.2 6.6 45 355-401 12-60 (119)
20 1b9l_A Protein (epimerase); is 35.5 41 0.0014 27.9 4.5 90 374-479 8-108 (120)
21 1gh8_A Translation elongation 33.3 85 0.0029 24.9 5.8 42 359-400 18-60 (89)
22 4aey_A D-erythro-7,8-dihydrone 32.3 1.1E+02 0.0037 26.8 6.9 92 372-479 42-144 (156)
23 3tqm_A Ribosome-associated fac 30.2 1.5E+02 0.005 23.3 6.9 75 354-460 11-88 (96)
24 3r2e_A Dihydroneopterin aldola 29.5 59 0.002 28.0 4.7 94 370-479 24-128 (143)
25 1ghh_A DINI, DNA-damage-induci 28.5 70 0.0024 25.0 4.4 27 446-472 18-45 (81)
26 2ywq_A Protein Y, ribosomal su 27.4 1.7E+02 0.0059 23.2 7.0 22 440-461 74-95 (105)
27 1f60_B Elongation factor EEF1B 27.3 2.4E+02 0.0081 22.5 8.8 43 358-400 22-65 (94)
28 1b64_A Elongation factor 1-bet 24.9 2.6E+02 0.0088 22.1 7.3 43 358-400 19-62 (91)
29 2jp3_A FXYD domain-containing 24.7 83 0.0028 23.6 4.0 28 196-224 7-34 (67)
30 3gr0_A Protein PRGH; type III 24.2 74 0.0025 29.1 4.5 33 445-477 59-91 (197)
31 3v26_X ORF3, ORF95, probable s 23.2 1.2E+02 0.0041 24.2 5.2 44 355-400 12-59 (101)
32 3gr1_A Protein PRGH; type III 21.2 91 0.0031 29.1 4.5 33 445-477 59-91 (227)
33 2z5i_A TM, general control pro 20.6 94 0.0032 22.0 3.5 24 437-460 8-31 (52)
34 3ce8_A Putative PII-like nitro 20.5 2.6E+02 0.0088 23.3 6.8 37 351-387 26-62 (120)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=7.9e-51 Score=409.89 Aligned_cols=285 Identities=18% Similarity=0.201 Sum_probs=252.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHH
Q 011644 135 EHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLIS 214 (480)
Q Consensus 135 ~~~~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~ 214 (480)
..-|++.++++++|++++++|+++|++|||+||+|||+||++|++++++++++.++++||||++|||||+|+|+++++++
T Consensus 9 ~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 9 FWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp CCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhh
Q 011644 215 AVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAV 294 (480)
Q Consensus 215 a~~l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v 294 (480)
++++++++ ++++++|++++++|++++...+++++++++++++...+++.++.. ++.++.+++++++|
T Consensus 89 ~~~l~~~~-~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~s~~l~a~~~h--------- 155 (306)
T 3j1z_P 89 SAFIMGSA-FLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRAL---AATNSTVVEADSLH--------- 155 (306)
T ss_dssp HHHHHHHH-HHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHH---TTSCCHHHHHHHHH---------
T ss_pred HHHHHHHH-HHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHhc---cccCCHHHHHHHHh---------
Confidence 99998875 578999999999999888777778888888998888777765543 34678999999988
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcc
Q 011644 295 MTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVD 374 (480)
Q Consensus 295 ~l~D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~ 374 (480)
...|++.+++++++. +..++||+|+||+++++|++++++.+++++|++...|+|++||++..++|++.+++.|+|.
T Consensus 156 ~~~D~l~s~~vli~~----~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~ 231 (306)
T 3j1z_P 156 YKSDLFLNAAVLLAL----VLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVL 231 (306)
T ss_dssp HHHHTTCCTTCCCTT----SSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBC
T ss_pred hcchhhhhhHHHHHH----HHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcc
Confidence 456766676666643 2346799999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHH
Q 011644 375 ALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLE 454 (480)
Q Consensus 375 ~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE 454 (480)
++|++|+|+.|++.+ +++||++|+++++.|+ |++.+++|
T Consensus 232 ~vh~l~~~~~G~~~~-v~~hi~v~~~~sl~ea----------------------------------------h~i~~~ie 270 (306)
T 3j1z_P 232 GLHDLRTRQAGKTVF-IQFHLELDGNLSLNEA----------------------------------------HSITDTTG 270 (306)
T ss_dssp CCCCBCCEEETTEEE-EEECCEECTTSBHHHH----------------------------------------HHHHHHHH
T ss_pred eeeeEEEEEECCcEE-EEEEEEECCCCCHHHH----------------------------------------HHHHHHHH
Confidence 999999999999887 8999999999998887 67889999
Q ss_pred HHHHhhCCCeeE-EEEEecCCCCC
Q 011644 455 KEIQDLVPGIRH-VDIEAHNPVDV 477 (480)
Q Consensus 455 ~~i~~~~P~i~~-v~iE~~~~~~~ 477 (480)
++|++++|..+- |++||...|+.
T Consensus 271 ~~l~~~~~~~~v~IhveP~~~ePt 294 (306)
T 3j1z_P 271 LRVKAAFEDAEVIIHQDPVQVEPT 294 (306)
T ss_dssp HHHHHHSTTCEEEECCEETTSCCC
T ss_pred HHHHhhCCCCeEEEEeCCCCCCCC
Confidence 999999986532 56677766643
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=2.3e-50 Score=402.15 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHH
Q 011644 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVG 217 (480)
Q Consensus 138 ~r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~ 217 (480)
+|++++++++|++++++|+++|+++||.||+|||+||++|++++++++++.++++||||++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCCCchhhccc
Q 011644 218 IFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTE 297 (480)
Q Consensus 218 l~~~g~~~ii~eai~~L~~~~~~~~~~~~~~v~~isliv~~~~~~~~~r~~~~~~~~~s~~l~a~~~~~~d~~s~~v~l~ 297 (480)
+++++ ++++++|++++++|+++..++++++++++++++|.++++++++..+ +.++++++++++| ...
T Consensus 83 l~~~~-~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~~~---~~~s~~l~a~~~h---------~~~ 149 (283)
T 3h90_A 83 ISGSA-LFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVR---RTQSQAVRADMLH---------YQS 149 (283)
T ss_dssp HHHHH-HHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHH---HSCCHHHHHHHHH---------HHH
T ss_pred HHHHH-HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHH---------HHH
Confidence 98875 5799999999999988777666788889999999998888766544 4678999999998 567
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcCCCcceee
Q 011644 298 DGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALY 377 (480)
Q Consensus 298 D~~~~~gviia~~gl~l~~~~g~~~~Dpi~sliIa~lIl~~~~~llres~~~Llg~s~~~e~~~~I~~~i~~~~gV~~v~ 377 (480)
|++.+++++++.+ + .++||+|+||++++++++++++.++++++++...|+|++||++..++|++.+++.|+|.++|
T Consensus 150 D~~~s~~vli~~~---~-~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~ 225 (283)
T 3h90_A 150 DVMMNGAILLALG---L-SWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAH 225 (283)
T ss_dssp HHCCCSCSCSSSC---S-CSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEE
T ss_pred HHHHHHHHHHHHH---H-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccce
Confidence 8777777766542 2 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHH
Q 011644 378 DCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEI 457 (480)
Q Consensus 378 ~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i 457 (480)
++|+|+.|+..+ +++||+++++++++++ |++.+++|+++
T Consensus 226 ~l~~~~~G~~~~-v~~hv~v~~~~~~~~~----------------------------------------~~i~~~i~~~l 264 (283)
T 3h90_A 226 DLRTRQSGPTRF-IQIHLEMEDSLPLVQA----------------------------------------HMVADQVEQAI 264 (283)
T ss_dssp EEEEEEETTEEE-EEEEEECCTTCBHHHH----------------------------------------HHHHHHHHHHH
T ss_pred eeEEEEECCcEE-EEEEEEeCCCCCHHHH----------------------------------------HHHHHHHHHHH
Confidence 999999999887 9999999999998877 67899999999
Q ss_pred HhhCCCeeEEEEEecCC
Q 011644 458 QDLVPGIRHVDIEAHNP 474 (480)
Q Consensus 458 ~~~~P~i~~v~iE~~~~ 474 (480)
++++|+ .++.+++++.
T Consensus 265 ~~~~~~-~~v~ih~ep~ 280 (283)
T 3h90_A 265 LRRFPG-SDVIIHQDPC 280 (283)
T ss_dssp HHHSTT-CEEEEEEECS
T ss_pred HHHCCC-CeEEEEeccC
Confidence 999998 5655544443
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.43 E-value=8.3e-13 Score=109.24 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=70.7
Q ss_pred HHcCCCCCHHhHHHHHHHHhcC--CCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhc
Q 011644 349 ALIGRAMDDHDMEKILHFLKND--PVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEK 426 (480)
Q Consensus 349 ~Llg~s~~~e~~~~I~~~i~~~--~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~ 426 (480)
.|||++|+++..++|++.+.+. |||.++|++|+|+.|+..+ +++||.+++++++.++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~-v~~hi~v~~~~~~~~~-------------------- 59 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSF-LEFHLVVRGDTPVEEA-------------------- 59 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEE-EEEEEEECTTCBHHHH--------------------
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEE-EEEEEEECCCCcHHHH--------------------
Confidence 4899999999999999999999 9999999999999999866 9999999999998877
Q ss_pred chHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecC
Q 011644 427 DDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHN 473 (480)
Q Consensus 427 ~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~ 473 (480)
|++.+++|+.|+++||.+ |+.|++++
T Consensus 60 --------------------h~i~~~ie~~l~~~~~~~-~vtIh~ep 85 (94)
T 3byp_A 60 --------------------HRLCDELERALAQAFPGL-QATIHVEP 85 (94)
T ss_dssp --------------------HHHHHHHHHHHHHHSTTE-EEEEEEEE
T ss_pred --------------------HHHHHHHHHHHHHHCCCC-EEEEEeCC
Confidence 678999999999999987 86665553
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.33 E-value=4.2e-12 Score=107.86 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=70.5
Q ss_pred cCCCCCHH--hHHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcch
Q 011644 351 IGRAMDDH--DMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDD 428 (480)
Q Consensus 351 lg~s~~~e--~~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~ 428 (480)
||++|+++ ..++|++.+.+.|||.++|++|+|+.|+..+ +++||.+++++++.++
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~-v~~hI~v~~~~sv~ea---------------------- 57 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYF-IEMDIEVDGKMSVKDA---------------------- 57 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECSCC-CE-EEEEEEECTTSCHHHH----------------------
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEECCcEE-EEEEEEECCCCCHHHH----------------------
Confidence 57788999 9999999999999999999999999998877 9999999999998877
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecC
Q 011644 429 TALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHN 473 (480)
Q Consensus 429 ~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~ 473 (480)
|++.++||++|+++||++.++.|++++
T Consensus 58 ------------------h~i~~~ie~~L~~~~~~i~~vtIhvEp 84 (107)
T 2zzt_A 58 ------------------HELTVKIRKEMLKRRDDIEDVTIHVEP 84 (107)
T ss_dssp ------------------HHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred ------------------HHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 678999999999999999886655543
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.16 E-value=0.0018 Score=63.57 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l 218 (480)
-...+++++|..++....-.+--.+|.++.+|+.|...|+++++.++++.-.+ .+|+..++++++++.++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 46677788888887777767777899999999999999999998887765432 3578889999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 011644 219 FCLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 219 ~~~g~~~ii~eai~~L~~~~~~~ 241 (480)
+..+. -++++++..|++..+++
T Consensus 184 ~~~~~-~l~~~s~~~Ll~~~~~~ 205 (283)
T 3h90_A 184 LYSAL-RMGYEAVQSLLDRALPD 205 (283)
T ss_dssp HHHHH-HHHHHHHHHHTTCCCCH
T ss_pred HHHHH-HHHHHHHHHHhCCCCCH
Confidence 88754 58899999999865543
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=95.92 E-value=0.0028 Score=63.03 Aligned_cols=94 Identities=20% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 011644 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (480)
Q Consensus 139 r~l~~sl~~Nl~l~i~kl~~g~~tgS~ALlADalhSl~D~~s~~l~l~a~~~s~r~~d~~~pfG~~R~E~l~ali~a~~l 218 (480)
-+..++++.|+.+....--.+--.+|.++.||+.|...|+++++.++++.-.+ -||+.-++++++++.++++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~--------~~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 121 VVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLS--------QYGWWWADGLFAVLIACYI 192 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSC--------CSSSCCCHHHHHHHHHHHH
T ss_pred hhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHH--------HhCcchhhhHHHHHHHHHH
Confidence 34555566666666666666666789999999999999999998888876554 2688889999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 011644 219 FCLGSGATIVNGIQHLWTAEAPE 241 (480)
Q Consensus 219 ~~~g~~~ii~eai~~L~~~~~~~ 241 (480)
+..+ ..++++++..|++..+++
T Consensus 193 ~~~~-~~l~~~s~~~Ll~~~~~~ 214 (306)
T 3j1z_P 193 GQQA-FDLGYRSIQALLDRELDE 214 (306)
T ss_dssp HHHH-HHHHHHHHHHHTTCCCCH
T ss_pred HHHH-HHHHHHHHHHHhCcccch
Confidence 8765 458899999999866553
No 7
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=69.60 E-value=15 Score=30.69 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=55.3
Q ss_pred ceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhhh-chhHHHHHHHHHhhhcchHHHHHHHhhhhhHH
Q 011644 374 DALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKRT-GREAWAKQFHEAAKEKDDTALLKIMSNYGEEV 442 (480)
Q Consensus 374 ~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~~-~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v 442 (480)
..+++++++.. | ++.+.+++++.++.... ..+-|+.+ ++.++.+.+++..+...
T Consensus 5 I~i~~l~~~~~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~--------------- 69 (121)
T 1dhn_A 5 IFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKA--------------- 69 (121)
T ss_dssp EEEEEEEEEECCSSSHHHHHHCEEEEEEEEEEECCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSC---------------
T ss_pred EEECCeEEEEEECCCHHHHccCCEEEEEEEEEEcchhccccCCccceeCHHHHHHHHHHHHhcCC---------------
Confidence 34666666543 2 44455888888774321 01111111 44556666655433221
Q ss_pred HHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 443 VTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 443 ~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
...++...++|=+.+.+.||.+..|.++++.|..|
T Consensus 70 ~~LiE~lA~~Ia~~~l~~~~~v~~v~V~v~Kp~ap 104 (121)
T 1dhn_A 70 VNLLEHLAERIANRINSQYNRVMETKVRITKENPP 104 (121)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTEEEEEEEEEESSCS
T ss_pred cchHHHHHHHHHHHHHHHCCCceEEEEEEEcCCCC
Confidence 12457888899999999999999999999888875
No 8
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=69.42 E-value=19 Score=30.65 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=47.6
Q ss_pred EcCeEEEEEEEEEEcCCcc-----HHHHhhhhchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH
Q 011644 384 IGPGFFRFKAEIDFNGVMV-----VQNYLKRTGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQ 458 (480)
Q Consensus 384 ~G~~~~~v~v~V~v~~~~s-----v~eal~~~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~ 458 (480)
.|... .+++++.++.... +.+. -++.++.+.+++..+... ...++...++|=+.+.
T Consensus 25 ~~Q~~-~vdl~l~~d~~~a~~sDdl~~t---vdY~~v~~~i~~~v~~~~---------------~~LiE~lA~~Ia~~il 85 (133)
T 1z9w_A 25 AGQRF-VIDVTVWIDLAEAANSDDLADT---YDYVRLASRAAEIVAGPP---------------RKLIETVGAEIADHVM 85 (133)
T ss_dssp -CCEE-EEEEEEEECCCCGGGCSSHHHH---SCHHHHHHHHHHHHHSSS---------------CCCHHHHHHHHHHHHH
T ss_pred cCCEE-EEEEEEEEcchhcccccCchhc---cCHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHh
Confidence 45444 4888888874421 2222 234555555554332221 1245788889999999
Q ss_pred hhCCCeeEEEEEecCCCCC
Q 011644 459 DLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 459 ~~~P~i~~v~iE~~~~~~~ 477 (480)
+ ||.+..|.++++.|..|
T Consensus 86 ~-~~~v~~v~V~v~Kp~ap 103 (133)
T 1z9w_A 86 D-DQRVHAVEVAVHKPQAP 103 (133)
T ss_dssp H-STTEEEEEEEEEEECCC
T ss_pred c-CCCccEEEEEEECCCCC
Confidence 8 99999999999888876
No 9
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=65.86 E-value=16 Score=31.80 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=58.0
Q ss_pred CcceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhhhh
Q 011644 372 VVDALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNYGE 440 (480)
Q Consensus 372 gV~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~ 440 (480)
....+++++++.. | ++.+.+++++.++.... ..+-++. -++.++.+.+++..+... -
T Consensus 22 d~I~I~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~sDdl~~tvdY~~v~~~I~~~v~~~~------------f 89 (146)
T 1sql_A 22 DKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSP------------R 89 (146)
T ss_dssp CEEEEEEEEEEECCCSSHHHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSC------------C
T ss_pred CEEEECCeEEEEEECCCHHHhccCCEEEEEEEEEEcchhcccccCchhccCHHHHHHHHHHHHHcCC------------c
Confidence 3456888888753 2 44555888887764311 0010111 144556666655433321 1
Q ss_pred HHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 441 EVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 441 ~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
..++...++|=+.+.+.||.+..|.|+++.|..|
T Consensus 90 ---~LiE~lA~~Ia~~il~~fp~v~~v~V~V~Kp~a~ 123 (146)
T 1sql_A 90 ---NLLETVAELIASKTLEKFHQINAVRVKLSKPNVA 123 (146)
T ss_dssp ---SCHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCT
T ss_pred ---chHHHHHHHHHHHHHHHCCCceEEEEEEECCcCC
Confidence 2457888999999999999999999999988887
No 10
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Probab=65.17 E-value=18 Score=30.12 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=53.5
Q ss_pred eeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhhh-chhHHHHHHHHHhhhcchHHHHHHHhhhhhHHH
Q 011644 375 ALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKRT-GREAWAKQFHEAAKEKDDTALLKIMSNYGEEVV 443 (480)
Q Consensus 375 ~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~~-~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~ 443 (480)
.+++++++.. | ++.+.+++++.++.... ..+-++.+ ++.++.+.+++..+... .
T Consensus 6 ~i~~l~~~~~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~---------------~ 70 (119)
T 1nbu_A 6 ELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPP---------------R 70 (119)
T ss_dssp EEEEEEEEECCCSSTTHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHSSC---------------C
T ss_pred EECCeEEEEEECCCHHHhccCCEEEEEEEEEEcchhccccccchhccCHHHHHHHHHHHHhcCC---------------c
Confidence 4666666543 2 34455888887764311 00111111 44556666654432221 1
Q ss_pred HhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 444 TALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 444 ~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
..++...++|=+.+.+ ||.+..|.++++.|..|
T Consensus 71 ~LiE~lA~~Ia~~~l~-~~~v~~v~V~v~Kp~ap 103 (119)
T 1nbu_A 71 KLIETVGAEIADHVMD-DQRVHAVEVAVHKPQAP 103 (119)
T ss_dssp SCHHHHHHHHHHHHHT-STTCCEEEEEEECTTCC
T ss_pred ccHHHHHHHHHHHHhc-CCCccEEEEEEECCCCC
Confidence 2457888899999999 99999999999999886
No 11
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=54.46 E-value=79 Score=25.02 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCcceeeeEEEEEEcCeEEEEEEEEEEcCCcc
Q 011644 360 MEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMV 402 (480)
Q Consensus 360 ~~~I~~~i~~~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~s 402 (480)
..+|.+.+.++|+|.+..-+-+..-+.+.. ..+.|.+.+..+
T Consensus 16 P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~-~~~~V~~~~~~~ 57 (109)
T 3lax_A 16 PIQIETILLQFKELGSDYLITLETAESNDE-MTVEVELSQLFT 57 (109)
T ss_dssp HHHHHHHHHTCTTEEEEEEEEEEEETTEEE-EEEEEEECTTCC
T ss_pred HHHHHHHHHhCCCcccceEEEEecccccee-EEEEEEEeeccc
Confidence 356778888999998776666666666654 667777766543
No 12
>2o90_A DHNA, dihydroneopterin aldolase; monapterin, drug design, atomic resolution, X-RAY crystallography, lyase; HET: NEU; 1.07A {Escherichia coli} PDB: 2o9m_A*
Probab=53.13 E-value=38 Score=28.18 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=48.2
Q ss_pred CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHhhCCC
Q 011644 386 PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPG 463 (480)
Q Consensus 386 ~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~~P~ 463 (480)
++.+.+++++.++.... ..+-++. -++.++.+.+++..+... - ..++...++|-+.+.+.||
T Consensus 25 ~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~------------~---~LiE~lA~~Ia~~~l~~~~- 88 (122)
T 2o90_A 25 EQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETVVSHVEGAR------------F---ALVERVAEEVAELLLARFN- 88 (122)
T ss_dssp CEEEEEEEEEEECTHHHHHHCCGGGSCCHHHHHHHHHHHHTTCE------------E---SCHHHHHHHHHHHHHHHSS-
T ss_pred CcEEEEEEEEEEcchhcccccccccccCHHHHHHHHHHHHhcCC------------c---chHHHHHHHHHHHHHhhCC-
Confidence 44555888888874311 0011111 144556666655433221 1 2457788889999998885
Q ss_pred eeEEEEEecCCCCCCC
Q 011644 464 IRHVDIEAHNPVDVPS 479 (480)
Q Consensus 464 i~~v~iE~~~~~~~~~ 479 (480)
+..|.+.++.|..|+.
T Consensus 89 v~~v~V~v~Kp~a~~~ 104 (122)
T 2o90_A 89 SPWVRIKLSKPGAVAR 104 (122)
T ss_dssp CSCEEEEEECTTSCTT
T ss_pred ceEEEEEEECCCCCCC
Confidence 8999999999988863
No 13
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=50.27 E-value=54 Score=25.95 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCHHhHHHHHHHHhc----CCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHH
Q 011644 355 MDDHDMEKILHFLKN----DPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTA 430 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~----~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~ 430 (480)
+++...+-|.+.+.+ ++.+.+++ +.+..-+... .+++.|.+++..-..++
T Consensus 12 vt~al~~~v~~Kl~kl~k~~~~i~~~~-V~l~~e~~~~-~vei~i~~~g~~l~a~~------------------------ 65 (95)
T 4fyl_A 12 LTDSMQDYVHSKFDKLERFFDHINHVQ-VILRVEKLRQ-IAEATLHVNQAEIHAHA------------------------ 65 (95)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCEEEEE-EEEEEETTEE-EEEEEEEETTEEEEEEE------------------------
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEecCcE-EEEEEEEeCCcEEEEEE------------------------
Confidence 445555555555544 44444443 4444455554 48999988765422221
Q ss_pred HHHHHhhhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 431 LLKIMSNYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 431 l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
.+++...++...++++|+.|++.
T Consensus 66 -------~~~d~y~AiD~a~dklerQlrk~ 88 (95)
T 4fyl_A 66 -------DDENMYAAIDSLVDKLVRQLNKH 88 (95)
T ss_dssp -------EESSHHHHHHHHHHHHHHHHHHH
T ss_pred -------ecCCHHHHHHHHHHHHHHHHHHH
Confidence 13344456778899999999864
No 14
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor}
Probab=50.14 E-value=30 Score=29.41 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=55.3
Q ss_pred CcceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhhhh
Q 011644 372 VVDALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNYGE 440 (480)
Q Consensus 372 gV~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~ 440 (480)
....+++++++.. | ++.+.+++++.++-... ..+-|+. -++.++.+.+++..+.. .
T Consensus 17 D~I~i~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~v~~~------------~- 83 (132)
T 3o1k_A 17 DKVFIEQLEVITTIGVYDWEQQIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVLEHIEQG------------R- 83 (132)
T ss_dssp CEEEEEEEEEEEEECSSTTGGGSCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHTC------------E-
T ss_pred cEEEECceEEEEEEcCCHHHhccCceEEEEEEEEEcchhcccccccccccCHHHHHHHHHHHHhcC------------C-
Confidence 3456888887653 2 34455788777763210 0011111 13445555555433221 1
Q ss_pred HHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 441 EVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 441 ~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
...++...++|=+.+.+.|| +..|.++++.|..++.
T Consensus 84 --~~LiE~lA~~Ia~~ll~~~~-v~~v~V~V~KP~a~~~ 119 (132)
T 3o1k_A 84 --FLLVERVAEEVAELIMTRFA-VPWLRIRLTKPGAVPQ 119 (132)
T ss_dssp --ESCHHHHHHHHHHHHHHHHC-CSEEEEEEEETTSSTT
T ss_pred --cccHHHHHHHHHHHHHHhCC-ccEEEEEEECCCCCCC
Confidence 12457788888888998988 9999999998887664
No 15
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=50.04 E-value=95 Score=24.72 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=30.6
Q ss_pred hHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 359 DMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 359 ~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
+++++.+.+++ .+.-......+..-+|-+...+.+.+.++++
T Consensus 20 Dl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~ 62 (91)
T 2yy3_A 20 NLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDE 62 (91)
T ss_dssp CHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSS
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECC
Confidence 45555555554 3445578888889999888888999988765
No 16
>3v9o_A Dihydroneopterin aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: GUN; 1.45A {Burkholderia thailandensis}
Probab=49.27 E-value=23 Score=30.63 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
.++...++|=+.+.+. |.+..|.|+++.|..|+.
T Consensus 93 LlE~lAe~Ia~~il~~-~~v~~v~V~V~Kp~a~~~ 126 (143)
T 3v9o_A 93 LQETLCDAIAASLLAH-DAVRAVRVSTEKPDAYPD 126 (143)
T ss_dssp SHHHHHHHHHHHHHSS-TTCCEEEEEEEETTSCTT
T ss_pred hHHHHHHHHHHHHHhc-CCccEEEEEEECCCCCCC
Confidence 4577788888888875 999999999998887764
No 17
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=43.65 E-value=63 Score=30.94 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=53.1
Q ss_pred eeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhhhhHHH
Q 011644 375 ALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNYGEEVV 443 (480)
Q Consensus 375 ~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v~ 443 (480)
.+.+++++.. | ++.+.+++++.++.... ..+-++. -++.++.+.+.+..+.. . .
T Consensus 5 ~I~~L~~~a~iGV~~~Er~~~Q~~~vdv~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~~~~~------------~---f 69 (270)
T 2cg8_A 5 QIKDLEMFAYHGLFPSEKELGQKFIVSAILSYDMTKAATDLDLTASVHYGELCQQWTTWFQET------------S---E 69 (270)
T ss_dssp EEEEEEEEECCCSSHHHHHHCEEEEEEEEEEECCHHHHC-------CCHHHHHHHHHHHHHSC------------C---C
T ss_pred EECCeEEEEEeCCCHHHHccCcEEEEEEEEEEchhhccccCCccccccHHHHHHHHHHHHHcC------------C---c
Confidence 4566666543 2 44555888887763211 0000111 13455555555433222 1 1
Q ss_pred HhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 444 TALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 444 ~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
..++..+.+|=+.+.+.||.+..|.++++.|..|
T Consensus 70 ~LiE~lA~~Ia~~ll~~~~~v~~V~V~v~Kp~ap 103 (270)
T 2cg8_A 70 DLIETVAYKLVERTFESYPLVQEMKLELKKPWAP 103 (270)
T ss_dssp SCHHHHHHHHHHHHHHHCTTCCEEEEEEEETTCS
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEEeecccc
Confidence 2567888899999999999999999999988876
No 18
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=37.31 E-value=79 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCHHhHHHHHHHHhc----CCCcceeeeEEEEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHH
Q 011644 355 MDDHDMEKILHFLKN----DPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTA 430 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~----~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~ 430 (480)
+++...+.|.+.+.+ .+.+.+++ +.+..-+... .+++.+.+++..-..+.
T Consensus 12 ~t~alr~~v~~kl~kL~r~~~~i~~~~-V~l~~e~~~~-~~ei~i~~~g~~l~a~~------------------------ 65 (107)
T 1imu_A 12 ITPAIREHLEERLAKLGKWQTQLISPH-FVLNKVPNGF-SVEASIGTPLGNLLASA------------------------ 65 (107)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCCCSSCE-EEEEEETTEE-EEEEEECCTTCCEEEEE------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcEEE-EEEEEcCCce-EEEEEEEcCCCEEEEEE------------------------
Confidence 445555555554443 34444443 4444445444 48888888766421111
Q ss_pred HHHHHhhhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 431 LLKIMSNYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 431 l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
.+++....+...++++|+.|++.
T Consensus 66 -------~~~d~y~AiD~a~dkLerqLrk~ 88 (107)
T 1imu_A 66 -------TSDDMYKAINEVEEKLERQLNKL 88 (107)
T ss_dssp -------EESCHHHHHHHHHHHHHHHHHHH
T ss_pred -------ecCCHHHHHHHHHHHHHHHHHHH
Confidence 13444456778899999998865
No 19
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=36.78 E-value=80 Score=26.22 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=26.1
Q ss_pred CCHHhHHHHHHHHhc----CCCcceeeeEEEEEEcCeEEEEEEEEEEcCCc
Q 011644 355 MDDHDMEKILHFLKN----DPVVDALYDCKSEVIGPGFFRFKAEIDFNGVM 401 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~----~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~~ 401 (480)
+++...+.|.+.+.+ .+.+.++ ++.+..-+... .+++.|.+++..
T Consensus 12 vt~alr~~ve~Kl~kL~k~~d~i~~~-~V~ls~e~~~~-~veiti~~~G~~ 60 (119)
T 3v2c_Y 12 ITPAIRQHVADRLAKLEKWQTHLINP-HIILSKEPQGF-VADATINTPNGV 60 (119)
T ss_dssp CCHHHHHHHHHHGGGGGGGCCCCEEE-EEEEECCSSCE-EEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEE-EEEEEEeCCCE-EEEEEEEcCCce
Confidence 456667777777665 3334332 23333344444 489999888763
No 20
>1b9l_A Protein (epimerase); isomerase; 2.90A {Escherichia coli} SCOP: d.96.1.3
Probab=35.47 E-value=41 Score=27.89 Aligned_cols=90 Identities=6% Similarity=0.020 Sum_probs=51.7
Q ss_pred ceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhhhhHH
Q 011644 374 DALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNYGEEV 442 (480)
Q Consensus 374 ~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~~v 442 (480)
..+++++++.. | ++.+.+++++.++.... ..+-|+. -++.++.+.+++..+... -
T Consensus 8 I~i~~l~~~~~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~------------~-- 73 (120)
T 1b9l_A 8 IRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTVTKNIIQHVENNR------------F-- 73 (120)
T ss_dssp EEEEEEEEEEEECSSHHHHHSCEEEEEEEEEEEEHHHHHGGGTCSSCCCHHHHHHHHHHHHHTSE------------E--
T ss_pred EEECceEEEEEecCCHHHhCcCCEEEEEEEEeecchhhcccCCcccccCHHHHHHHHHHHHhcCC------------c--
Confidence 35667776543 2 44555888887762110 0000111 134555566654332221 1
Q ss_pred HHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 443 VTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 443 ~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
..++...++|-+.+.+ +|.+..|.+.++.|..|+.
T Consensus 74 -~LiE~lA~~Ia~~~l~-~~~v~~v~V~v~Kp~a~~~ 108 (120)
T 1b9l_A 74 -SLLEKLTQDVLDIARE-HHWVTYAEVEIDKLHALRY 108 (120)
T ss_dssp -SCHHHHHHHHHHHHTC-STTCSEEEEEEEEETCSTT
T ss_pred -chHHHHHHHHHHHHhc-cCCceEEEEEEECCCCCCc
Confidence 1456777777777774 7999999999988887764
No 21
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=33.30 E-value=85 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred hHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 359 DMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 359 ~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
+++++.+.+++ .+.-......+.--+|-+...+.+.+.++.+
T Consensus 18 Dl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~ 60 (89)
T 1gh8_A 18 DLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDA 60 (89)
T ss_dssp CHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSS
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcC
Confidence 45555555544 3444567778888888888778999998765
No 22
>4aey_A D-erythro-7,8-dihydroneopterin triphosphate epime; isomerase, pteridine biosynthesis; 3.00A {Pseudomonas aeruginosa}
Probab=32.30 E-value=1.1e+02 Score=26.79 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=51.1
Q ss_pred CcceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhhh-chhHHHHHHHHHhhhcchHHHHHHHhhhhh
Q 011644 372 VVDALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKRT-GREAWAKQFHEAAKEKDDTALLKIMSNYGE 440 (480)
Q Consensus 372 gV~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~~-~~h~i~~~l~~~~~~~~~~~l~~~~~~~~~ 440 (480)
....+++++++.. | ++.+.+++++.++.... ..+-|+.+ ++.++.+.+++..+.. .-
T Consensus 42 D~I~I~~L~~~a~iGV~~~Er~~gQ~~~VDl~l~~d~~~A~~sDdL~dTvdY~~v~~~I~~~v~~~------------~f 109 (156)
T 4aey_A 42 ARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEEN------------RF 109 (156)
T ss_dssp SEEEEEEEEEEEEECSSHHHHHSCEEEEEEEEEECCC----------CCCHHHHHHHHHHHHHHTS------------EE
T ss_pred cEEEEcceEEEEEECCCHHHhccCcEEEEEEEEEecchhccccCcchhccCHHHHHHHHHHHHhcC------------Cc
Confidence 3457888888754 2 34455888887764311 11111111 3344555554433221 11
Q ss_pred HHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 441 EVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 441 ~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
+ .++...++|=+.+. .+|.+..|.|+++.|..++.
T Consensus 110 ~---LIEtLAe~Ia~~ll-~~~~v~~V~V~V~KP~a~~~ 144 (156)
T 4aey_A 110 A---LLERMTQEILDLVM-ENPAVRYAEVEVDKPHALRF 144 (156)
T ss_dssp S---CHHHHHHHHHHHHH-HSCCCSEEEEEEEEETCSTT
T ss_pred c---cHHHHHHHHHHHHH-hcCCccEEEEEEECCCCCCC
Confidence 2 34666677777666 68999999999988776653
No 23
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=30.20 E-value=1.5e+02 Score=23.29 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCCHHhHHHHHHHHhcCCC-cceeeeEE--EEEEcCeEEEEEEEEEEcCCccHHHHhhhhchhHHHHHHHHHhhhcchHH
Q 011644 354 AMDDHDMEKILHFLKNDPV-VDALYDCK--SEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDDTA 430 (480)
Q Consensus 354 s~~~e~~~~I~~~i~~~~g-V~~v~~lr--~~~~G~~~~~v~v~V~v~~~~sv~eal~~~~~h~i~~~l~~~~~~~~~~~ 430 (480)
.+++...+.|.+.+.+..- ...+.+++ +..-+.. +.+++.+.+++..-..+.
T Consensus 11 ~~t~al~~~v~~kl~kL~k~~~~i~~~~V~l~~e~~~-~~~ei~i~~~g~~l~a~~------------------------ 65 (96)
T 3tqm_A 11 DISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLK-KIVDANVKLPGSTINAQA------------------------ 65 (96)
T ss_dssp CCCHHHHHHHHHHHTTCCSSGGGCCEEEEEEEEETTE-EEEEEEEEETTEEEEEEE------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEeCCc-eEEEEEEEeCCcEEEEEE------------------------
Confidence 3566777778888777442 12233333 3333444 448999988866321111
Q ss_pred HHHHHhhhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 431 LLKIMSNYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 431 l~~~~~~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
.+++...++...++++|+.|++.
T Consensus 66 -------~~~d~y~Aid~a~dklerqL~k~ 88 (96)
T 3tqm_A 66 -------ESDDMYKTVDLLMHKLETQLSKY 88 (96)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------ecCCHHHHHHHHHHHHHHHHHHH
Confidence 13344456778899999999865
No 24
>3r2e_A Dihydroneopterin aldolase; structural genomics, IDP90567, center for structural genomic infectious diseases, csgid, bifunctional; 2.15A {Yersinia pestis}
Probab=29.47 E-value=59 Score=28.01 Aligned_cols=94 Identities=7% Similarity=0.041 Sum_probs=56.3
Q ss_pred CCCcceeeeEEEEEE-c--------CeEEEEEEEEEEcCCcc-HHHHhhh-hchhHHHHHHHHHhhhcchHHHHHHHhhh
Q 011644 370 DPVVDALYDCKSEVI-G--------PGFFRFKAEIDFNGVMV-VQNYLKR-TGREAWAKQFHEAAKEKDDTALLKIMSNY 438 (480)
Q Consensus 370 ~~gV~~v~~lr~~~~-G--------~~~~~v~v~V~v~~~~s-v~eal~~-~~~h~i~~~l~~~~~~~~~~~l~~~~~~~ 438 (480)
......+++++++.. | ++.+.+++++.++-... ..+-++. -++.++.+.+++..+..
T Consensus 24 ~mD~I~I~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~sDdl~~tvdY~~v~~~I~~~v~~~------------ 91 (143)
T 3r2e_A 24 AMDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQ------------ 91 (143)
T ss_dssp CCEEEEEEEEEEEEEECSSHHHHTSEEEEEEEEEEEECHHHHHTCCCTTSSCCHHHHHHHHHHHHHSS------------
T ss_pred CCCEEEECceEEEEEECCCHHHcccCceEEEEEEEEEcchhcccccccccccCHHHHHHHHHHHHhcC------------
Confidence 334557888888654 2 33455788887752100 0000111 13345555555433221
Q ss_pred hhHHHHhhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCCCC
Q 011644 439 GEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDVPS 479 (480)
Q Consensus 439 ~~~v~~~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~~~ 479 (480)
.- ..++...++|=+.+.+.|| +..|.+++..|..|+.
T Consensus 92 ~f---~LlE~LAe~Ia~~ll~~~~-v~~v~V~V~KP~a~~~ 128 (143)
T 3r2e_A 92 RF---ALVERVAEEVAELLLRRFN-SPWVRIKVSKPGAVAQ 128 (143)
T ss_dssp EE---SCHHHHHHHHHHHHHHHHC-CSEEEEEEECTTSSTT
T ss_pred Cc---ccHHHHHHHHHHHHHHhCC-ccEEEEEEECCCCCCC
Confidence 11 2457788888899999998 9999999999988764
No 25
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=28.48 E-value=70 Score=24.96 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHhhCCCee-EEEEEec
Q 011644 446 LGTEVDRLEKEIQDLVPGIR-HVDIEAH 472 (480)
Q Consensus 446 ~~~~~~rIE~~i~~~~P~i~-~v~iE~~ 472 (480)
+..+-..++++|.++||++. +|.|-+.
T Consensus 18 ~~aL~~EL~kRl~~~fpd~~~~V~Vr~~ 45 (81)
T 1ghh_A 18 IDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCceEEEeec
Confidence 35667789999999999984 7777653
No 26
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=27.38 E-value=1.7e+02 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=16.3
Q ss_pred hHHHHhhhHHHHHHHHHHHhhC
Q 011644 440 EEVVTALGTEVDRLEKEIQDLV 461 (480)
Q Consensus 440 ~~v~~~~~~~~~rIE~~i~~~~ 461 (480)
++...++...++++|+.|++.-
T Consensus 74 ~d~y~Aid~a~dklerqL~k~k 95 (105)
T 2ywq_A 74 ADLYAAIDRAVDRLETQVKRFR 95 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888999999998653
No 27
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=27.32 E-value=2.4e+02 Score=22.50 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=31.6
Q ss_pred HhHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 358 HDMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 358 e~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
.+++++.+.+++ .+.-......+.--.|-+...+.+.+.++.+
T Consensus 22 tDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd 65 (94)
T 1f60_B 22 TNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDD 65 (94)
T ss_dssp SCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred cCHHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECC
Confidence 456777777766 3344567788888888888778888888765
No 28
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=24.88 E-value=2.6e+02 Score=22.12 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=30.9
Q ss_pred HhHHHHHHHHhc-CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 358 HDMEKILHFLKN-DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 358 e~~~~I~~~i~~-~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
.+++++.+.+++ .+.-......+.-..|-+...+.+.+.++++
T Consensus 19 tDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd 62 (91)
T 1b64_A 19 TDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 62 (91)
T ss_dssp SCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECC
Confidence 346666666666 3344567788888888888778899988765
No 29
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.71 E-value=83 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=18.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011644 196 DALHPYGYSKERFVWSLISAVGIFCLGSG 224 (480)
Q Consensus 196 d~~~pfG~~R~E~l~ali~a~~l~~~g~~ 224 (480)
+..|.|-|+.+.. ++|+.+.++|++|..
T Consensus 7 ~dpF~YDY~tLRi-gGLifA~vLfi~GI~ 34 (67)
T 2jp3_A 7 GSPFYYDWESLQL-GGLIFGGLLCIAGIA 34 (67)
T ss_dssp TSGGGGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCcccchHHhee-cchhhHHHHHHHHHH
Confidence 4456667777665 556667777777654
No 30
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=24.18 E-value=74 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
.++.+..|||..+.+.+|.+....|+..+|..|
T Consensus 59 ~~~~e~~~i~~~L~~~~P~l~~~~i~l~~P~~P 91 (197)
T 3gr0_A 59 NENEENKRISIWLDTYYPQLAYYRIHFDEPRKP 91 (197)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCEEEEECSSTTSC
T ss_pred ehHHHHHHHHHHHHhcCCceeEEEEecCCCCCC
Confidence 468899999999999999999988888888877
No 31
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=23.21 E-value=1.2e+02 Score=24.24 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=22.7
Q ss_pred CCHHhHHHHHHHHhc----CCCcceeeeEEEEEEcCeEEEEEEEEEEcCC
Q 011644 355 MDDHDMEKILHFLKN----DPVVDALYDCKSEVIGPGFFRFKAEIDFNGV 400 (480)
Q Consensus 355 ~~~e~~~~I~~~i~~----~~gV~~v~~lr~~~~G~~~~~v~v~V~v~~~ 400 (480)
+++...+.|.+.+.+ .+.+.++ ++.+..-+... .+++.+.+++.
T Consensus 12 ~t~alr~~ve~Kl~kL~k~~d~i~~~-~V~l~~e~~~~-~~eitv~~~G~ 59 (101)
T 3v26_X 12 ITEALREFVTAKFAKLEQYFDRINQV-YVVLKVEKVTH-TSDATLHVNGG 59 (101)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSCCCCE-EEEEEECSSCE-EEEEEECSTTC
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEE-EEEEEEcCCCE-EEEEEEEcCCc
Confidence 455555555554443 3444443 23333333333 48888888765
No 32
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=21.25 E-value=91 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHhhCCCeeEEEEEecCCCCC
Q 011644 445 ALGTEVDRLEKEIQDLVPGIRHVDIEAHNPVDV 477 (480)
Q Consensus 445 ~~~~~~~rIE~~i~~~~P~i~~v~iE~~~~~~~ 477 (480)
.++.+..|||..+.+.+|.+....|+..+|..|
T Consensus 59 ~~~~~~~~i~~~l~~~~P~l~~~~i~l~~P~~P 91 (227)
T 3gr1_A 59 NENEENKRISIWLDTYYPQLAYYRIHFDEPRKP 91 (227)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEECSSTTSC
T ss_pred ehHHHHHHHHHHHHhcCCceEEEEEEcCCCCCC
Confidence 568889999999999999999999999988886
No 33
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.59 E-value=94 Score=22.04 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=19.4
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHhh
Q 011644 437 NYGEEVVTALGTEVDRLEKEIQDL 460 (480)
Q Consensus 437 ~~~~~v~~~~~~~~~rIE~~i~~~ 460 (480)
.++++.|..+...+|++|..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888999999999887643
No 34
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.52 E-value=2.6e+02 Score=23.30 Aligned_cols=37 Identities=5% Similarity=-0.096 Sum_probs=25.3
Q ss_pred cCCCCCHHhHHHHHHHHhcCCCcceeeeEEEEEEcCe
Q 011644 351 IGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPG 387 (480)
Q Consensus 351 lg~s~~~e~~~~I~~~i~~~~gV~~v~~lr~~~~G~~ 387 (480)
+....+|+..+++++.+.+.||+...--..+.-.|..
T Consensus 26 I~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grq 62 (120)
T 3ce8_A 26 LVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSRE 62 (120)
T ss_dssp EEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC
T ss_pred EEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCC
Confidence 4445678899999999999887765544444444433
Done!