RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011644
(480 letters)
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 109 bits (275), Expect = 6e-27
Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 30/274 (10%)
Query: 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDA 197
+RA +L N + LK + T S +LA+ +HS++D +++ GL S + PD
Sbjct: 12 RRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDR 71
Query: 198 LHPYGYSKERFVWSLISAVGIFCLGSGATI-VNGIQHLWTAEAPENMKYAALVICGSFII 256
HPYG+ K + SLI V I +G I + I+ L + + E A V S +I
Sbjct: 72 DHPYGHGKAETLASLI--VSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVI 129
Query: 257 EGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGA-----AVTGLVIAGAS 311
+ A + KK S A++ D +T L +
Sbjct: 130 KEALYRYLRRVGKKT------------------NSQALIA-DALHHRSDVLTSLAVLVG- 169
Query: 312 LIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDP 371
+ ++ G DP+ ++++ + L + + + L+ A+D D+EKI + + P
Sbjct: 170 -LLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVP 228
Query: 372 VVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQN 405
V ++D ++ G F I+ + + ++
Sbjct: 229 GVKGVHDLRTRKSGSRIF-IDVHIEVDPDLSLEE 261
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 106 bits (266), Expect = 6e-26
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 16/252 (6%)
Query: 150 LVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFV 209
L+ +K L T S +LA+ +HS+ D + +L L S R PD HP+G+ + +
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 210 WSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVK 269
+LI ++ + +G + I+ L + E E + + S ++ L +A +
Sbjct: 61 AALIVSLLLLGVG-VFILYESIERLISPEEIEPGGILLVAL-ISLVVNLLLALYLRRAGR 118
Query: 270 KGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSI 329
K A V G + L+ + +TG I DP+ S+
Sbjct: 119 KI-------------GKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASL 165
Query: 330 IVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFF 389
++ L+ + L++ + L+G + D +++I L+ P V ++D + GP +F
Sbjct: 166 LIALLILYTGLRLLKESLSELLGASPDPELVDEIRDALEKLPGVLGVHDLRVWKSGPKYF 225
Query: 390 RFKAEIDFNGVM 401
I+ + +
Sbjct: 226 -VDIHIEVDPDL 236
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 84.6 bits (210), Expect = 2e-18
Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 31/241 (12%)
Query: 154 LKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLI 213
+K L + S +LA+ +HS++D A + L SRR D HP+G+ + + +L+
Sbjct: 5 IKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALL 64
Query: 214 SAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKK--- 270
+ + + + + + I+ L E + +V I+ L + +
Sbjct: 65 NGLFLV-VVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGHRLGS 123
Query: 271 ----GAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPI 326
AA ++ D + +SV V+ G A DPI
Sbjct: 124 LALRAAALHVLS--DAL------SSVGVLIGALLIYFGWHWA---------------DPI 160
Query: 327 GSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGP 386
++++ L+ A L++ + + L+ A D+ D+E+I + + P V ++D IGP
Sbjct: 161 AALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGP 220
Query: 387 G 387
G
Sbjct: 221 G 221
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 51.2 bits (123), Expect = 4e-07
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 27/246 (10%)
Query: 137 SQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQV--LLAYGLSSSRRA 194
++R + AL N ++ L T S +LA+ +H ++D + L+A L+ RR
Sbjct: 20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLA--RRP 77
Query: 195 PDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPEN--MKYAALVICG 252
+GY + + + ++A+ + + S + IQ L M A++
Sbjct: 78 ATKRFTFGYKRLEILAAFLNALLLI-VVSLLILWEAIQRLLAPPPIHYSGMLVVAII--- 133
Query: 253 SFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASL 312
++ S L+ + KG E + +R H + D G++IA
Sbjct: 134 GLVVNLVSALL----LHKG-HEENLNMRGAYL--H-------VLGDALGSVGVIIAA--- 176
Query: 313 IAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMEKILHFLKNDPV 372
I + TG + DPI SI++ L+ A L++ + + L+ + D++K+ L P
Sbjct: 177 IVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPG 236
Query: 373 VDALYD 378
V +++D
Sbjct: 237 VASVHD 242
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 37.3 bits (87), Expect = 0.013
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 134 DEHSQRAVTTALWGNFLVFSL----KFGVWLGTSSHVMLAEVVHSVADFA----NQVLLA 185
++ R V+ A + SL K W T S +LA +V S+ D A N +++
Sbjct: 2 NQSYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVR 61
Query: 186 YGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGA-TIVNGIQHLWTAEAPENMK 244
Y L + D H +G+ K + +L A +F GS + GIQHL + P M
Sbjct: 62 YSL----QPADDEHTFGHGKAESLAAL--AQSMFISGSALFLFLTGIQHLIS---PTPMN 112
Query: 245 YAALVI 250
+ I
Sbjct: 113 DPGVGI 118
>gnl|CDD|185054 PRK15099, PRK15099, O-antigen translocase; Provisional.
Length = 416
Score = 35.8 bits (83), Expect = 0.052
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 40/160 (25%)
Query: 212 LISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKG 271
LI+ +G+ +GA I NG+ + + A+V S ++ G S L+A+
Sbjct: 46 LITVLGVL---AGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGFSTLLAL------ 96
Query: 272 AAAEGMTIRDYIWRGHDPTSVAVMTEDG-------AAVTGLVIAGASL-IAV-----NVT 318
P S + A+ + IA A+L +A+ +
Sbjct: 97 ----------VFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAA 146
Query: 319 GNAIYDPIGSIIVGNLLGMVAIFLIQR---NRHALIGRAM 355
GNA+ S+IVG+L+G+ A +L R AL+G A+
Sbjct: 147 GNAL-----SLIVGSLIGVAAYYLCYRLGGYEGALLGLAL 181
>gnl|CDD|225778 COG3238, COG3238, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 150
Score = 31.1 bits (71), Expect = 0.56
Identities = 35/150 (23%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 203 YSKERFVWSLIS-AVGIFCLGSGATIVNGIQHL-WTAEAPENMKYAALV-ICGSFIIEGA 259
Y + SLIS VG L I G L A AP +A + + G+ + +
Sbjct: 30 YLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP---WWAWIGGLLGAIFVTSS 86
Query: 260 SLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTG 319
LL + GAA TI + G +I G + G
Sbjct: 87 ILLAP----RLGAA---TTI-------------------ALVIAGQLIMGLLIDHFGWFG 120
Query: 320 NAIYDPIGSIIVGNLLGMVAIFLIQRNRHA 349
I+G LL + I L +R A
Sbjct: 121 VPKRPLNLPRILGILLVLAGILLARRFGAA 150
>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators
having an N-terminal Type 1 glutamine amidotransferase
(GATase1)-like domain. A subgroup of AraC
transcriptional regulators having an N-terminal Type 1
glutamine amidotransferase (GATase1)-like domain. This
group contains proteins similar to the Pseudomonas
aeruginosa ArgR regulator. ArgR functions in the
control of expression of certain genes of arginine
biosynthesis and catabolism. AraC regulators are defined
by a AraC-type helix-turn-helix DNA binding domain at
their C-terminal. AraC family transcriptional
regulators are widespread among bacteria and are
involved in regulating diverse and important biological
functions, including carbon metabolism, stress responses
and virulence in different microorganisms. The catalytic
triad typical of GATase1 domains is not conserved in
this GATase1-like domain. However, in common with
typical GATase1domains a reactive cys residue is found
in some sequences in the sharp turn between a beta
strand and an alpha helix termed the nucleophile elbow.
Length = 185
Score = 31.0 bits (71), Expect = 0.86
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 206 ERFVWSLISAVGIFCLGSGATIV--NGIQHLWTAEAPENMKYAALVICGSFIIEGASLLV 263
E + W ++S GA + NG++ A + L + G ++
Sbjct: 31 ELYRWRVLSL-------DGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGAR-RAVTP 82
Query: 264 AIQAVKKGAAAEGMTI 279
A+ A + AA G+ +
Sbjct: 83 ALLAWLRRAARRGVAL 98
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 29.2 bits (66), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 420 HEAAKEKDDTALLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIE 470
H A KE ++ L V+ A G EVD E ++ LV + V+IE
Sbjct: 11 HSAGKEINEENLKA--------VLEAAGVEVD--EARVKALVAALEGVNIE 51
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.8 bits (71), Expect = 1.6
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 416 AKQFHEAAKEKDDTALLKI-MSNYGEEVVTALGTEVDRLEKEIQDL 460
+K+ +A ++ +D L + EE+ AL E+D LE E+++L
Sbjct: 55 SKEIGQAKRKGEDAEALIAEVKELKEEI-KALEAELDELEAELEEL 99
>gnl|CDD|220762 pfam10452, TCO89, TORC1 subunit TCO89. TC089 is a component of the
TORC1 complex. TORC1 is responsible for a wide range of
rapamycin-sensitive cellular activities.
Length = 459
Score = 30.3 bits (68), Expect = 2.7
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 97 LLGLVSFDNSGSNQHHKYSSNRN---FFTRAKQVKKIETTDEHSQRA----VTTALW 146
L + + + QH S N F T Q K + ++Q A + T +W
Sbjct: 389 LTRVSNQSSISKKQHKDSQSGFNSSSFGTYQDQAKTFDELIPNAQNAKIQRILTGIW 445
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 29.9 bits (68), Expect = 3.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 451 DRLEKEIQDLVPGIRHVDIEAH 472
+RLEKE++ L P V + A
Sbjct: 309 ERLEKELKQLAPKKLKVKVIAP 330
>gnl|CDD|220953 pfam11038, DGF-1_5, Dispersed gene family protein 1 of Trypanosoma
cruzi region 5. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. Other
domains on this protein include DGF-1_N, DGF-1_2, and
DGF-1_4. This domain is just downstream from the
C-terminus, but not the C-terminus of proteins, also
annotated as being DGF-1, that constitute family
DGF-1_C.
Length = 278
Score = 29.2 bits (65), Expect = 4.8
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 252 GSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGAS 311
G FI ++++ AV +G+ + + + P ++A +A+TG V+AGA+
Sbjct: 87 GYFIGADETIVIRCDAVAVHGGCKGVLLGAFTINSNTPPALASAL---SAITG-VVAGAA 142
Query: 312 LIAVNVTGNAIYDPIGSIIVGNLLGMVA 339
+AV VTG +GSI+ LG+ A
Sbjct: 143 AVAVVVTGG-----LGSILEMQALGVFA 165
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 28.8 bits (65), Expect = 6.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 296 TEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGS------IIVGNLLGMVAIFLIQRNR 347
E A + A AV T + I + +IV L MV I+LI R R
Sbjct: 287 AEAATAAETAALEAAKTAAVETTTTILQTAIIASIVAIVVIV---LIMVIIYLILRYR 341
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 28.7 bits (65), Expect = 7.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 287 HDPTSVAVMTEDGAAVTGLVIAGASLIAVNV 317
D + V+ DGA + GL AG A +
Sbjct: 434 VDEDTGEVLRADGAPIPGLYAAGRC--ASGI 462
>gnl|CDD|151542 pfam11098, Chlorosome_CsmC, Chlorosome envelope protein C.
Chlorosomes are light-harvesting antennae found in green
bacteria. CsmC is one of the proteins that exists in the
chlorosome envelope. CsmC has been shown to exist as a
homomultimer with CsmD in the chlorosome envelope. CsmC
is thought to be important in chlorosome elongation and
shape.
Length = 139
Score = 27.5 bits (61), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 293 AVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLG 336
++T A V GL +AG+ + V T ++ D G +G LLG
Sbjct: 28 VLLTGQSAVVGGLELAGSVVETVAGTVGSLIDATG---IGRLLG 68
>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I. coiled-coil structure. It
has been suggested that the domains I and II from
laminin A, B1 and B2 may come together to form a triple
helical coiled-coil structure.
Length = 263
Score = 28.1 bits (63), Expect = 9.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 416 AKQFHEAAKEKDDTA--LLKIMSNYGEEVVTALGTEVDRLEKEIQDLVPGIRHVDIEAH 472
AK EA K D +L+ ++ GE G+ + R+ E Q ++ IR D +
Sbjct: 88 AKTLAEAIKNLRDNIKEILEKLAGLGENAFALPGSALSRMLAEAQRMLGEIRERDFQKQ 146
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 28.1 bits (63), Expect = 9.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 403 VQNYLKRTGREAWAKQFHEAAKE-KDDTA------LLKIMSNYGEEVVTALGTEVD 451
+Q+Y+ R K + E KD+ A L + MS YG E+V L T++D
Sbjct: 85 IQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDID 140
>gnl|CDD|114866 pfam06173, DUF986, Protein of unknown function (DUF986). This
family consists of several bacterial putative membrane
proteins of unknown function.
Length = 149
Score = 27.6 bits (62), Expect = 9.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 340 IFLIQRNRHALIGRAMDDHDMEKILHFL 367
I +I N L+ + + D+EKI F
Sbjct: 118 ILVIDLNGKRLLIQVTNLDDLEKIYKFF 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,975,926
Number of extensions: 2503137
Number of successful extensions: 2689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2680
Number of HSP's successfully gapped: 44
Length of query: 480
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 379
Effective length of database: 6,457,848
Effective search space: 2447524392
Effective search space used: 2447524392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)