RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 011644
         (480 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 79.8 bits (196), Expect = 7e-18
 Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 17/216 (7%)

Query: 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDA 197
            RA   A     L+  +K   W  T S  +LA +V S+ D    +     +  S +  D 
Sbjct: 6   SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 65

Query: 198 LHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIE 257
            H +G+ K   + +L  ++ I        +   +  +    +P  M    + +  + +  
Sbjct: 66  NHSFGHGKAESLAALAQSMFISGS----ALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 258 GASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNV 317
             ++++           +   +R          +  +  +    + G ++    L     
Sbjct: 122 ICTIILVSFQRWVVRRTQSQAVR----------ADMLHYQSDVMMNGAILLALGLSW--- 168

Query: 318 TGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGR 353
            G    D + ++ +G  +   A+ +      +L+ R
Sbjct: 169 YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204


>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 28.7 bits (64), Expect = 0.53
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 268 VKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAV-TGLVIAGASLIAVN 316
           VKK AA  G+ I            +  +   G+A   G +  G  ++ VN
Sbjct: 12  VKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61


>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus
           amyloliquefaciens [TaxId: 1390]}
          Length = 89

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 374 DALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREAWAKQFHEAAKEKDD 428
           DAL+DC +  +          +++      +   +    E+  + F EA  E  D
Sbjct: 35  DALWDCLTGWVEYPL-----VLEWRQFEQSKQLTENG-AESVLQVFREAKAEGCD 83


>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 339

 Score = 27.6 bits (60), Expect = 3.2
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 11/123 (8%)

Query: 324 DPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDM-------EKILHFLKNDPVVDAL 376
              G   V   + M  I    +    +     D H          ++L    +       
Sbjct: 40  ATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIK 99

Query: 377 YDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKR----TGREAWAKQFHEAAKEKDDTALL 432
              +S  +     +F    D+         + R      +    K   E  K+ +   L 
Sbjct: 100 AMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLS 159

Query: 433 KIM 435
            ++
Sbjct: 160 GLL 162


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 25.1 bits (55), Expect = 6.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 354 AMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFF 389
           A+ D + ++I+  + + P V   +D ++   GP  F
Sbjct: 1   ALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRF 36


>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 179

 Score = 25.8 bits (56), Expect = 8.2
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 65  FINDNNGKFFSILEHTNQFRGFCSVHCSKRFVLL 98
           +I+D N  F   +        F       RFV +
Sbjct: 107 YISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAI 140


>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 278

 Score = 26.1 bits (56), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 247 ALVICGSFIIEGASLLVAIQAVKKGA 272
            L+I GS +  GA +L  + ++K G 
Sbjct: 24  VLIIAGSRLYSGAPVLSGMGSLKVGT 49


>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
           (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 463

 Score = 26.2 bits (57), Expect = 9.4
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 349 ALIGRAMDDHDMEKILHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLK 408
           AL  R   + D  +++ F+  D  V+   + KS+      F+     D      + N  +
Sbjct: 389 ALTSRQFREDDFRRVVDFI--DEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQ 446

Query: 409 RTGREAWAKQF 419
           R   E +A+ F
Sbjct: 447 RV--EQFARAF 455


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,782,368
Number of extensions: 83882
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 16
Length of query: 480
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,185,626
Effective search space: 463579766
Effective search space used: 463579766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)