Query 011645
Match_columns 480
No_of_seqs 384 out of 3104
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 2.7E-87 5.9E-92 666.2 27.6 326 74-447 1-334 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 2E-77 4.2E-82 612.7 31.6 323 75-445 1-327 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 1.4E-76 3E-81 621.3 31.5 324 75-447 1-328 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 1.7E-76 3.6E-81 628.3 31.3 325 74-447 2-341 (500)
5 PRK12298 obgE GTPase CgtA; Rev 100.0 4.4E-75 9.5E-80 606.1 31.0 329 74-450 1-337 (390)
6 TIGR02729 Obg_CgtA Obg family 100.0 6.5E-75 1.4E-79 593.2 30.8 321 76-445 1-328 (329)
7 KOG1489 Predicted GTP-binding 100.0 5.4E-73 1.2E-77 557.6 25.0 337 57-443 22-364 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 3.4E-44 7.4E-49 328.6 7.4 155 76-271 1-156 (156)
9 cd01898 Obg Obg subfamily. Th 99.9 1.3E-23 2.8E-28 192.1 16.3 164 273-443 1-168 (170)
10 COG1084 Predicted GTPase [Gene 99.9 9E-22 2E-26 196.6 11.1 194 236-444 131-334 (346)
11 COG1163 DRG Predicted GTPase [ 99.9 3.3E-21 7.1E-26 192.0 14.6 162 273-446 64-289 (365)
12 COG0486 ThdF Predicted GTPase 99.9 8.1E-22 1.7E-26 205.3 10.3 178 246-447 197-377 (454)
13 cd01881 Obg_like The Obg-like 99.9 3.4E-21 7.4E-26 176.5 12.6 160 277-443 1-174 (176)
14 cd01899 Ygr210 Ygr210 subfamil 99.9 2.2E-21 4.7E-26 197.8 12.5 173 275-447 1-270 (318)
15 PF02421 FeoB_N: Ferrous iron 99.9 4.9E-22 1.1E-26 182.7 6.4 151 273-441 1-156 (156)
16 COG1160 Predicted GTPases [Gen 99.9 6.1E-21 1.3E-25 198.3 14.4 155 273-445 4-164 (444)
17 TIGR00436 era GTP-binding prot 99.8 1.3E-20 2.8E-25 187.9 16.0 164 274-452 2-170 (270)
18 COG1159 Era GTPase [General fu 99.8 9.2E-21 2E-25 187.8 14.2 172 274-459 8-185 (298)
19 PTZ00258 GTP-binding protein; 99.8 8.7E-21 1.9E-25 197.4 14.0 162 270-431 19-265 (390)
20 COG0012 Predicted GTPase, prob 99.8 8.5E-21 1.8E-25 193.3 13.2 112 272-383 2-133 (372)
21 PRK09602 translation-associate 99.8 1.3E-20 2.8E-25 197.4 14.0 176 273-449 2-274 (396)
22 TIGR03156 GTP_HflX GTP-binding 99.8 2E-20 4.4E-25 193.3 13.0 161 271-443 188-349 (351)
23 cd01897 NOG NOG1 is a nucleola 99.8 1.6E-19 3.5E-24 164.9 15.8 161 273-445 1-167 (168)
24 PRK11058 GTPase HflX; Provisio 99.8 4.5E-20 9.7E-25 195.2 13.4 163 271-445 196-361 (426)
25 PRK09601 GTP-binding protein Y 99.8 1.3E-19 2.8E-24 186.8 14.0 115 273-387 3-136 (364)
26 cd01896 DRG The developmentall 99.8 3.8E-19 8.3E-24 173.9 14.4 160 273-446 1-226 (233)
27 cd01900 YchF YchF subfamily. 99.8 1.7E-19 3.6E-24 180.2 10.2 113 275-387 1-132 (274)
28 PRK15494 era GTPase Era; Provi 99.8 7.8E-19 1.7E-23 180.8 15.2 170 273-459 53-229 (339)
29 COG1160 Predicted GTPases [Gen 99.8 8.3E-19 1.8E-23 182.4 13.0 172 270-455 176-360 (444)
30 cd01878 HflX HflX subfamily. 99.8 2.4E-18 5.1E-23 163.4 14.9 161 270-444 39-203 (204)
31 PRK00089 era GTPase Era; Revie 99.8 2.2E-18 4.8E-23 173.3 15.4 166 274-453 7-178 (292)
32 COG2262 HflX GTPases [General 99.8 8.7E-19 1.9E-23 179.9 12.6 164 270-446 190-356 (411)
33 cd01861 Rab6 Rab6 subfamily. 99.8 3.4E-18 7.4E-23 154.8 13.6 157 273-444 1-160 (161)
34 PRK05291 trmE tRNA modificatio 99.8 1.1E-18 2.3E-23 186.1 11.2 172 247-446 196-370 (449)
35 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.1E-18 6.7E-23 156.3 11.6 153 274-443 1-166 (167)
36 cd01868 Rab11_like Rab11-like. 99.8 4.8E-18 1E-22 154.9 12.6 157 273-444 4-163 (165)
37 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 8.6E-18 1.9E-22 159.7 14.8 163 273-447 1-169 (201)
38 PRK03003 GTP-binding protein D 99.8 4.3E-18 9.4E-23 182.6 13.6 158 270-445 36-198 (472)
39 TIGR03594 GTPase_EngA ribosome 99.8 7.5E-18 1.6E-22 178.0 15.1 161 271-445 171-343 (429)
40 cd01894 EngA1 EngA1 subfamily. 99.8 7.2E-18 1.6E-22 151.2 12.7 151 276-444 1-156 (157)
41 cd04136 Rap_like Rap-like subf 99.8 9.3E-18 2E-22 152.1 13.6 156 273-444 2-161 (163)
42 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.2E-17 2.5E-22 150.5 13.8 157 273-444 2-160 (162)
43 PRK03003 GTP-binding protein D 99.8 6.8E-18 1.5E-22 181.1 14.3 162 271-446 210-382 (472)
44 cd04142 RRP22 RRP22 subfamily. 99.8 1.2E-17 2.7E-22 159.2 14.5 168 273-446 1-174 (198)
45 cd01864 Rab19 Rab19 subfamily. 99.8 8.8E-18 1.9E-22 153.6 12.8 158 272-444 3-164 (165)
46 cd01865 Rab3 Rab3 subfamily. 99.7 1.1E-17 2.4E-22 153.3 13.1 158 273-445 2-162 (165)
47 cd01879 FeoB Ferrous iron tran 99.7 9.7E-18 2.1E-22 150.9 12.3 151 277-444 1-155 (158)
48 cd04119 RJL RJL (RabJ-Like) su 99.7 1.7E-17 3.8E-22 150.3 13.6 160 273-445 1-166 (168)
49 cd04114 Rab30 Rab30 subfamily. 99.7 1.5E-17 3.3E-22 152.0 13.1 161 270-445 5-168 (169)
50 cd04112 Rab26 Rab26 subfamily. 99.7 1.2E-17 2.6E-22 157.5 12.7 159 273-447 1-164 (191)
51 cd01867 Rab8_Rab10_Rab13_like 99.7 1.7E-17 3.7E-22 152.3 13.4 159 272-445 3-164 (167)
52 cd01866 Rab2 Rab2 subfamily. 99.7 2E-17 4.4E-22 152.2 13.7 159 272-445 4-165 (168)
53 cd04109 Rab28 Rab28 subfamily. 99.7 2.3E-17 4.9E-22 158.8 14.5 163 273-447 1-167 (215)
54 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.1E-17 2.3E-22 149.8 11.2 152 273-444 2-155 (157)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.8E-17 3.8E-22 151.5 12.7 159 272-445 2-163 (166)
56 cd04158 ARD1 ARD1 subfamily. 99.7 1.5E-17 3.3E-22 153.5 12.4 154 274-447 1-162 (169)
57 cd04171 SelB SelB subfamily. 99.7 5.4E-17 1.2E-21 146.7 15.6 150 274-442 2-162 (164)
58 PRK00093 GTP-binding protein D 99.7 2.1E-17 4.5E-22 175.1 14.8 160 271-445 172-343 (435)
59 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.3E-17 2.8E-22 177.3 13.2 158 268-445 199-359 (442)
60 KOG1491 Predicted GTP-binding 99.7 1.2E-17 2.5E-22 167.4 12.0 112 273-384 21-151 (391)
61 cd04157 Arl6 Arl6 subfamily. 99.7 2.2E-17 4.8E-22 149.5 12.5 153 274-443 1-161 (162)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.2E-17 7E-22 148.7 13.6 158 273-445 3-163 (164)
63 cd04113 Rab4 Rab4 subfamily. 99.7 3E-17 6.6E-22 149.0 13.3 157 273-444 1-160 (161)
64 cd01895 EngA2 EngA2 subfamily. 99.7 7.8E-17 1.7E-21 146.1 16.0 157 273-443 3-172 (174)
65 cd04175 Rap1 Rap1 subgroup. T 99.7 3.6E-17 7.9E-22 149.1 13.6 157 273-445 2-162 (164)
66 TIGR03594 GTPase_EngA ribosome 99.7 2.3E-17 5.1E-22 174.2 13.8 154 274-445 1-159 (429)
67 smart00178 SAR Sar1p-like memb 99.7 2.1E-17 4.4E-22 155.2 11.8 153 272-444 17-183 (184)
68 cd01863 Rab18 Rab18 subfamily. 99.7 5.9E-17 1.3E-21 146.9 14.4 156 273-444 1-160 (161)
69 smart00175 RAB Rab subfamily o 99.7 4.1E-17 9E-22 147.7 13.3 157 273-445 1-161 (164)
70 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 9.9E-17 2.1E-21 146.0 15.9 155 273-445 1-165 (168)
71 cd04122 Rab14 Rab14 subfamily. 99.7 4.4E-17 9.5E-22 149.3 13.5 158 272-445 2-163 (166)
72 cd00154 Rab Rab family. Rab G 99.7 4.8E-17 1E-21 144.8 13.2 155 273-442 1-158 (159)
73 cd04124 RabL2 RabL2 subfamily. 99.7 7E-17 1.5E-21 147.7 14.5 153 273-445 1-157 (161)
74 cd04120 Rab12 Rab12 subfamily. 99.7 4.5E-17 9.7E-22 156.1 13.8 156 274-445 2-162 (202)
75 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.3E-17 7.2E-22 150.0 12.2 151 273-443 1-158 (159)
76 PRK04213 GTP-binding protein; 99.7 1.2E-16 2.5E-21 151.3 16.0 157 272-446 9-192 (201)
77 cd04163 Era Era subfamily. Er 99.7 9.7E-17 2.1E-21 143.9 14.5 158 273-444 4-167 (168)
78 cd00879 Sar1 Sar1 subfamily. 99.7 4E-17 8.6E-22 152.8 12.3 153 272-444 19-189 (190)
79 smart00173 RAS Ras subfamily o 99.7 7.3E-17 1.6E-21 146.8 13.6 157 273-445 1-161 (164)
80 cd04123 Rab21 Rab21 subfamily. 99.7 7.7E-17 1.7E-21 145.2 13.6 157 273-444 1-160 (162)
81 PRK00093 GTP-binding protein D 99.7 5.6E-17 1.2E-21 171.9 14.7 153 273-443 2-159 (435)
82 cd04144 Ras2 Ras2 subfamily. 99.7 4.4E-17 9.6E-22 153.4 12.2 159 274-446 1-163 (190)
83 cd04116 Rab9 Rab9 subfamily. 99.7 1E-16 2.2E-21 147.0 14.3 160 272-444 5-169 (170)
84 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.4E-17 9.4E-22 151.2 11.9 152 272-443 15-173 (174)
85 PRK09518 bifunctional cytidyla 99.7 5.9E-17 1.3E-21 181.8 15.3 162 271-447 449-622 (712)
86 cd04106 Rab23_lke Rab23-like s 99.7 1E-16 2.2E-21 145.3 14.0 158 273-444 1-161 (162)
87 cd04101 RabL4 RabL4 (Rab-like4 99.7 1.1E-16 2.4E-21 145.5 14.1 158 273-445 1-163 (164)
88 cd04151 Arl1 Arl1 subfamily. 99.7 4.6E-17 1E-21 147.9 11.5 149 274-443 1-157 (158)
89 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-17 3.9E-22 143.8 8.4 113 274-401 1-116 (116)
90 cd04154 Arl2 Arl2 subfamily. 99.7 5.6E-17 1.2E-21 149.9 11.7 151 273-443 15-172 (173)
91 cd04161 Arl2l1_Arl13_like Arl2 99.7 5E-17 1.1E-21 150.0 11.3 151 274-443 1-166 (167)
92 cd01860 Rab5_related Rab5-rela 99.7 1.5E-16 3.2E-21 144.4 13.9 156 273-445 2-162 (163)
93 cd04149 Arf6 Arf6 subfamily. 99.7 5.9E-17 1.3E-21 149.9 11.4 151 273-443 10-167 (168)
94 cd04140 ARHI_like ARHI subfami 99.7 1.2E-16 2.6E-21 146.4 13.2 157 273-443 2-162 (165)
95 cd04127 Rab27A Rab27a subfamil 99.7 1.3E-16 2.9E-21 147.6 13.6 165 272-445 4-176 (180)
96 cd01862 Rab7 Rab7 subfamily. 99.7 1.4E-16 3E-21 145.6 13.5 160 273-445 1-166 (172)
97 cd04176 Rap2 Rap2 subgroup. T 99.7 1.3E-16 2.9E-21 145.1 13.0 157 273-445 2-162 (163)
98 cd01890 LepA LepA subfamily. 99.7 2.5E-16 5.5E-21 145.4 15.0 156 274-445 2-176 (179)
99 KOG1191 Mitochondrial GTPase [ 99.7 1.6E-17 3.5E-22 173.1 7.7 183 248-445 250-449 (531)
100 cd04110 Rab35 Rab35 subfamily. 99.7 1.8E-16 3.9E-21 150.6 14.2 160 272-447 6-168 (199)
101 cd04121 Rab40 Rab40 subfamily. 99.7 1.7E-16 3.6E-21 150.5 13.7 157 271-445 5-166 (189)
102 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.6E-16 3.5E-21 148.6 13.2 163 268-447 5-173 (205)
103 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.2E-16 2.7E-21 144.6 12.1 150 274-443 1-157 (158)
104 cd04117 Rab15 Rab15 subfamily. 99.7 2.2E-16 4.7E-21 144.6 13.8 155 273-443 1-159 (161)
105 cd04146 RERG_RasL11_like RERG/ 99.7 1.2E-16 2.5E-21 146.1 11.9 158 274-445 1-163 (165)
106 cd04118 Rab24 Rab24 subfamily. 99.7 2.5E-16 5.5E-21 147.9 13.9 158 273-446 1-166 (193)
107 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.3E-16 4.9E-21 147.1 13.3 154 273-443 2-172 (175)
108 PLN00223 ADP-ribosylation fact 99.7 1.6E-16 3.4E-21 149.2 12.3 153 273-445 18-177 (181)
109 PLN03110 Rab GTPase; Provision 99.7 1.9E-16 4.2E-21 152.7 13.2 159 271-445 11-173 (216)
110 cd00876 Ras Ras family. The R 99.7 2E-16 4.3E-21 142.2 12.4 156 274-444 1-159 (160)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.4E-16 3E-21 149.3 11.7 160 273-446 4-170 (183)
112 smart00177 ARF ARF-like small 99.7 1.9E-16 4.1E-21 147.4 12.5 154 272-445 13-173 (175)
113 cd04139 RalA_RalB RalA/RalB su 99.7 3E-16 6.6E-21 141.8 13.4 158 273-445 1-161 (164)
114 cd04125 RabA_like RabA-like su 99.7 2.6E-16 5.6E-21 147.5 13.4 158 273-446 1-162 (188)
115 PLN03118 Rab family protein; P 99.7 3E-16 6.6E-21 150.3 13.9 161 271-447 13-178 (211)
116 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.9E-16 6.3E-21 144.7 13.2 160 272-445 2-168 (170)
117 PTZ00369 Ras-like protein; Pro 99.7 1.8E-16 4E-21 149.1 12.1 158 273-446 6-167 (189)
118 cd04132 Rho4_like Rho4-like su 99.7 3.5E-16 7.7E-21 146.0 13.8 157 274-446 2-167 (187)
119 TIGR03598 GTPase_YsxC ribosome 99.7 2.9E-16 6.2E-21 146.5 13.1 147 271-434 17-178 (179)
120 cd04111 Rab39 Rab39 subfamily. 99.7 4E-16 8.6E-21 150.1 14.4 160 273-446 3-166 (211)
121 cd00877 Ran Ran (Ras-related n 99.7 3.7E-16 8E-21 144.1 13.5 156 273-445 1-158 (166)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.2E-16 4.8E-21 143.0 11.7 150 274-442 1-158 (160)
123 PRK09518 bifunctional cytidyla 99.7 2.2E-16 4.7E-21 177.3 14.2 160 268-445 271-435 (712)
124 cd01892 Miro2 Miro2 subfamily. 99.7 2.5E-16 5.5E-21 145.7 12.2 159 270-445 2-165 (169)
125 cd04177 RSR1 RSR1 subgroup. R 99.7 3.2E-16 6.9E-21 144.0 12.8 158 273-445 2-163 (168)
126 cd04159 Arl10_like Arl10-like 99.7 2.5E-16 5.5E-21 140.4 11.5 151 274-443 1-158 (159)
127 COG0370 FeoB Fe2+ transport sy 99.7 1.4E-16 3E-21 172.5 11.5 156 274-446 5-164 (653)
128 PRK00454 engB GTP-binding prot 99.7 1E-15 2.3E-20 143.5 15.9 158 271-445 23-193 (196)
129 TIGR00092 GTP-binding protein 99.7 1.1E-16 2.5E-21 165.1 10.2 116 273-388 3-138 (368)
130 cd01893 Miro1 Miro1 subfamily. 99.7 7E-16 1.5E-20 141.6 14.4 154 274-445 2-163 (166)
131 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 4.9E-16 1.1E-20 144.3 12.9 157 273-445 3-163 (172)
132 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 8.7E-16 1.9E-20 142.4 14.4 158 273-445 1-164 (170)
133 cd04147 Ras_dva Ras-dva subfam 99.7 5.9E-16 1.3E-20 146.8 13.4 159 274-447 1-164 (198)
134 PLN03108 Rab family protein; P 99.7 6.9E-16 1.5E-20 148.2 14.0 161 271-446 5-168 (210)
135 cd04143 Rhes_like Rhes_like su 99.7 6.2E-16 1.3E-20 152.7 13.9 158 274-445 2-170 (247)
136 PLN03071 GTP-binding nuclear p 99.7 7.7E-16 1.7E-20 149.0 14.0 156 273-447 14-173 (219)
137 cd04134 Rho3 Rho3 subfamily. 99.7 6.1E-16 1.3E-20 145.7 13.0 157 273-446 1-174 (189)
138 cd04126 Rab20 Rab20 subfamily. 99.7 7E-16 1.5E-20 149.8 13.7 154 273-446 1-190 (220)
139 PRK09554 feoB ferrous iron tra 99.7 6.5E-16 1.4E-20 173.9 15.3 156 273-445 4-167 (772)
140 cd04155 Arl3 Arl3 subfamily. 99.7 4.8E-16 1E-20 142.8 11.6 152 272-443 14-172 (173)
141 PTZ00133 ADP-ribosylation fact 99.7 4.4E-16 9.6E-21 146.1 11.5 154 272-445 17-177 (182)
142 cd01889 SelB_euk SelB subfamil 99.7 1.2E-15 2.6E-20 143.9 14.4 160 273-445 1-185 (192)
143 smart00174 RHO Rho (Ras homolo 99.7 7.4E-16 1.6E-20 141.7 12.5 154 275-445 1-171 (174)
144 cd00880 Era_like Era (E. coli 99.7 1.3E-15 2.8E-20 134.5 13.7 154 277-443 1-161 (163)
145 cd01871 Rac1_like Rac1-like su 99.7 9.4E-16 2E-20 142.8 13.2 154 273-443 2-172 (174)
146 cd00881 GTP_translation_factor 99.7 1.5E-15 3.3E-20 140.4 14.5 151 274-445 1-186 (189)
147 cd04133 Rop_like Rop subfamily 99.7 1E-15 2.3E-20 143.4 13.5 156 273-445 2-172 (176)
148 cd04135 Tc10 TC10 subfamily. 99.7 1E-15 2.3E-20 140.7 13.2 155 273-444 1-172 (174)
149 cd01875 RhoG RhoG subfamily. 99.7 8.9E-16 1.9E-20 145.1 12.8 156 273-445 4-176 (191)
150 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.5E-16 1.2E-20 142.7 10.8 148 274-442 1-162 (164)
151 cd01870 RhoA_like RhoA-like su 99.7 1.1E-15 2.4E-20 140.7 12.7 155 273-444 2-173 (175)
152 TIGR00231 small_GTP small GTP- 99.7 2E-15 4.4E-20 133.2 14.0 155 273-442 2-160 (161)
153 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.7E-15 3.7E-20 148.2 14.6 157 272-445 13-187 (232)
154 cd04131 Rnd Rnd subfamily. Th 99.6 1.3E-15 2.9E-20 142.6 13.2 155 273-444 2-174 (178)
155 cd04148 RGK RGK subfamily. Th 99.6 8.9E-16 1.9E-20 148.8 12.3 157 273-445 1-162 (221)
156 KOG1486 GTP-binding protein DR 99.6 8.1E-16 1.8E-20 148.6 11.7 160 273-444 63-235 (364)
157 cd04128 Spg1 Spg1p. Spg1p (se 99.6 2.2E-15 4.8E-20 141.6 14.1 156 273-445 1-165 (182)
158 cd00157 Rho Rho (Ras homology) 99.6 2.3E-15 5E-20 137.4 13.8 153 273-442 1-169 (171)
159 cd04137 RheB Rheb (Ras Homolog 99.6 1.2E-15 2.6E-20 141.5 11.9 159 273-446 2-163 (180)
160 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.9E-15 4E-20 142.4 13.1 155 273-444 6-178 (182)
161 COG0218 Predicted GTPase [Gene 99.6 2.7E-15 5.8E-20 141.8 14.1 158 271-445 23-196 (200)
162 TIGR02528 EutP ethanolamine ut 99.6 1.3E-15 2.8E-20 135.8 11.5 137 274-442 2-141 (142)
163 KOG1423 Ras-like GTPase ERA [C 99.6 1.2E-15 2.5E-20 151.3 11.9 172 270-454 70-279 (379)
164 PF00025 Arf: ADP-ribosylation 99.6 1.2E-15 2.7E-20 142.5 11.3 154 271-444 13-174 (175)
165 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.7E-15 5.8E-20 138.7 12.9 153 273-442 1-170 (173)
166 cd04103 Centaurin_gamma Centau 99.6 3.4E-15 7.5E-20 137.1 13.2 150 274-444 2-157 (158)
167 KOG0078 GTP-binding protein SE 99.6 3.9E-15 8.4E-20 141.0 13.7 159 270-446 10-174 (207)
168 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 7.9E-15 1.7E-19 142.6 13.8 156 273-445 2-175 (222)
169 cd01891 TypA_BipA TypA (tyrosi 99.6 1.8E-14 4E-19 136.1 15.1 142 272-434 2-170 (194)
170 cd01873 RhoBTB RhoBTB subfamil 99.6 1.1E-14 2.3E-19 138.8 13.5 156 273-443 3-193 (195)
171 PRK15467 ethanolamine utilizat 99.6 6.5E-15 1.4E-19 135.4 11.6 140 274-445 3-146 (158)
172 TIGR00437 feoB ferrous iron tr 99.6 4.6E-15 9.9E-20 163.1 12.0 148 279-444 1-153 (591)
173 cd04166 CysN_ATPS CysN_ATPS su 99.6 7.8E-15 1.7E-19 140.7 11.5 144 274-437 1-185 (208)
174 cd04129 Rho2 Rho2 subfamily. 99.6 1.2E-14 2.7E-19 136.5 12.6 156 273-445 2-172 (187)
175 cd01876 YihA_EngB The YihA (En 99.6 3.1E-14 6.8E-19 128.0 14.0 154 274-444 1-169 (170)
176 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 3E-14 6.4E-19 133.3 14.0 162 273-448 23-187 (221)
177 KOG0092 GTPase Rab5/YPT51 and 99.6 1.5E-14 3.3E-19 135.0 11.9 158 273-450 6-171 (200)
178 smart00176 RAN Ran (Ras-relate 99.6 2.3E-14 5.1E-19 137.1 13.4 152 278-447 1-155 (200)
179 KOG0073 GTP-binding ADP-ribosy 99.6 2.1E-14 4.5E-19 130.8 12.1 150 273-445 17-177 (185)
180 PF00071 Ras: Ras family; Int 99.6 1.5E-14 3.2E-19 131.3 11.3 155 274-445 1-160 (162)
181 PF00009 GTP_EFTU: Elongation 99.6 2.4E-14 5.2E-19 134.8 12.5 156 271-445 2-186 (188)
182 KOG1490 GTP-binding protein CR 99.6 6.6E-15 1.4E-19 153.6 9.3 157 273-442 169-337 (620)
183 KOG0080 GTPase Rab18, small G 99.6 1.2E-14 2.6E-19 131.9 9.8 163 270-448 9-176 (209)
184 cd01888 eIF2_gamma eIF2-gamma 99.6 8.4E-14 1.8E-18 133.1 15.5 161 274-445 2-198 (203)
185 KOG0087 GTPase Rab11/YPT3, sma 99.5 2.4E-14 5.1E-19 135.4 10.8 163 268-445 10-175 (222)
186 KOG0394 Ras-related GTPase [Ge 99.5 1.8E-14 3.9E-19 133.6 9.5 160 270-447 7-179 (210)
187 KOG0095 GTPase Rab30, small G 99.5 3.7E-14 8E-19 127.3 11.0 162 268-446 3-169 (213)
188 TIGR00487 IF-2 translation ini 99.5 6.6E-14 1.4E-18 153.6 15.4 153 271-443 86-247 (587)
189 cd00882 Ras_like_GTPase Ras-li 99.5 4.5E-14 9.8E-19 122.7 10.6 152 277-442 1-156 (157)
190 KOG0098 GTPase Rab2, small G p 99.5 7E-14 1.5E-18 129.9 10.1 158 271-445 5-167 (216)
191 PRK05306 infB translation init 99.5 2.1E-13 4.5E-18 153.4 15.3 153 270-443 288-449 (787)
192 KOG0070 GTP-binding ADP-ribosy 99.5 5.6E-14 1.2E-18 130.6 8.9 151 273-445 18-177 (181)
193 PRK12317 elongation factor 1-a 99.5 1.6E-13 3.5E-18 145.4 13.4 146 271-436 5-195 (425)
194 TIGR01393 lepA GTP-binding pro 99.5 2.9E-13 6.2E-18 149.0 15.1 159 272-446 3-180 (595)
195 cd01884 EF_Tu EF-Tu subfamily. 99.5 4.6E-13 9.9E-18 127.8 14.5 141 273-434 3-171 (195)
196 CHL00189 infB translation init 99.5 1.9E-13 4.2E-18 152.4 13.5 158 270-444 242-408 (742)
197 KOG1487 GTP-binding protein DR 99.5 6.7E-14 1.4E-18 136.0 8.3 160 273-446 60-281 (358)
198 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.7E-13 3.7E-18 130.0 10.4 161 274-445 2-183 (196)
199 TIGR00475 selB selenocysteine- 99.5 5.6E-13 1.2E-17 146.5 14.8 151 274-445 2-165 (581)
200 PF08477 Miro: Miro-like prote 99.5 6.7E-14 1.4E-18 121.0 5.4 115 274-403 1-119 (119)
201 PF10662 PduV-EutP: Ethanolami 99.5 7.4E-13 1.6E-17 119.9 12.2 138 273-442 2-142 (143)
202 cd01883 EF1_alpha Eukaryotic e 99.4 4.1E-13 8.9E-18 129.9 11.0 142 274-435 1-194 (219)
203 PTZ00132 GTP-binding nuclear p 99.4 1.4E-12 3.1E-17 125.1 14.4 158 273-447 10-169 (215)
204 KOG0410 Predicted GTP binding 99.4 1.3E-13 2.7E-18 137.8 7.0 164 267-446 173-341 (410)
205 TIGR00491 aIF-2 translation in 99.4 2E-12 4.4E-17 141.8 16.0 158 273-443 5-213 (590)
206 cd04105 SR_beta Signal recogni 99.4 9.1E-13 2E-17 126.2 11.6 121 273-407 1-124 (203)
207 KOG0079 GTP-binding protein H- 99.4 4E-13 8.6E-18 120.6 7.8 159 271-446 7-169 (198)
208 KOG0075 GTP-binding ADP-ribosy 99.4 4.5E-13 9.8E-18 120.1 7.8 154 271-445 19-181 (186)
209 cd01886 EF-G Elongation factor 99.4 7E-13 1.5E-17 132.7 9.8 126 274-420 1-146 (270)
210 KOG0091 GTPase Rab39, small G 99.4 1.7E-12 3.6E-17 118.4 10.9 156 272-445 8-172 (213)
211 CHL00071 tufA elongation facto 99.4 3.5E-12 7.5E-17 134.8 15.0 132 270-422 10-162 (409)
212 PRK05433 GTP-binding protein L 99.4 3.2E-12 7E-17 140.9 15.2 161 270-446 5-184 (600)
213 cd04102 RabL3 RabL3 (Rab-like3 99.4 3.8E-12 8.2E-17 122.2 13.4 124 273-407 1-144 (202)
214 PRK10218 GTP-binding protein; 99.4 5.4E-12 1.2E-16 138.9 16.4 156 270-446 3-195 (607)
215 COG3596 Predicted GTPase [Gene 99.4 3.2E-12 6.9E-17 125.9 12.9 168 269-448 36-224 (296)
216 PRK09866 hypothetical protein; 99.4 6.6E-12 1.4E-16 136.2 16.5 114 327-446 230-353 (741)
217 PRK10512 selenocysteinyl-tRNA- 99.4 5.2E-12 1.1E-16 139.6 15.8 152 274-445 2-165 (614)
218 cd04170 EF-G_bact Elongation f 99.4 8.1E-13 1.8E-17 131.6 8.2 124 274-418 1-144 (268)
219 TIGR00483 EF-1_alpha translati 99.4 2.8E-12 6E-17 136.1 12.7 148 270-436 5-197 (426)
220 PLN00023 GTP-binding protein; 99.4 3.8E-12 8.2E-17 129.6 13.1 127 273-406 22-165 (334)
221 PRK12736 elongation factor Tu; 99.4 7.6E-12 1.7E-16 131.6 15.5 155 270-445 10-200 (394)
222 TIGR03680 eif2g_arch translati 99.4 4.8E-12 1E-16 133.6 13.9 161 273-445 5-195 (406)
223 cd04168 TetM_like Tet(M)-like 99.4 4.3E-12 9.3E-17 124.6 12.1 126 274-420 1-146 (237)
224 COG1100 GTPase SAR1 and relate 99.4 8.8E-12 1.9E-16 119.1 13.8 158 273-446 6-185 (219)
225 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.6E-11 3.5E-16 119.6 15.7 103 327-442 84-219 (224)
226 KOG0093 GTPase Rab3, small G p 99.4 5E-12 1.1E-16 113.4 10.8 162 269-445 18-182 (193)
227 TIGR01394 TypA_BipA GTP-bindin 99.4 8.5E-12 1.8E-16 137.3 14.9 153 273-446 2-191 (594)
228 cd04169 RF3 RF3 subfamily. Pe 99.4 2.7E-12 5.8E-17 128.2 9.9 126 273-419 3-152 (267)
229 PRK04004 translation initiatio 99.3 1.4E-11 3.1E-16 135.4 16.3 157 273-442 7-214 (586)
230 KOG0076 GTP-binding ADP-ribosy 99.3 9.2E-13 2E-17 121.2 5.5 160 270-446 15-187 (197)
231 PRK12735 elongation factor Tu; 99.3 1.1E-11 2.4E-16 130.4 14.4 155 270-445 10-202 (396)
232 PF09439 SRPRB: Signal recogni 99.3 4.8E-12 1E-16 119.2 9.5 119 273-407 4-127 (181)
233 PRK04000 translation initiatio 99.3 1.4E-11 3.1E-16 130.2 13.9 162 272-445 9-200 (411)
234 PRK00049 elongation factor Tu; 99.3 1.8E-11 3.9E-16 128.8 14.5 155 270-445 10-202 (396)
235 PLN03127 Elongation factor Tu; 99.3 2.9E-11 6.3E-16 129.1 16.0 119 270-409 59-194 (447)
236 PRK05506 bifunctional sulfate 99.3 9.2E-12 2E-16 138.4 12.6 147 270-436 22-211 (632)
237 KOG0086 GTPase Rab4, small G p 99.3 1.1E-11 2.3E-16 111.9 10.4 156 270-445 7-170 (214)
238 cd04104 p47_IIGP_like p47 (47- 99.3 2.8E-11 6E-16 115.2 13.8 153 273-446 2-184 (197)
239 KOG0088 GTPase Rab21, small G 99.3 4.6E-12 1E-16 114.9 7.6 161 272-449 13-178 (218)
240 cd04167 Snu114p Snu114p subfam 99.3 1.9E-11 4.2E-16 117.5 12.5 116 274-405 2-136 (213)
241 cd01885 EF2 EF2 (for archaea a 99.3 2.4E-11 5.2E-16 118.3 12.9 119 274-405 2-138 (222)
242 TIGR00485 EF-Tu translation el 99.3 2.9E-11 6.3E-16 127.1 14.1 152 270-442 10-197 (394)
243 KOG0071 GTP-binding ADP-ribosy 99.3 1.6E-11 3.5E-16 109.4 9.9 151 273-445 18-177 (180)
244 PRK05124 cysN sulfate adenylyl 99.3 1.9E-11 4.1E-16 131.4 12.3 148 270-437 25-216 (474)
245 cd01850 CDC_Septin CDC/Septin. 99.3 8.8E-11 1.9E-15 117.9 16.2 141 273-426 5-180 (276)
246 cd01853 Toc34_like Toc34-like 99.3 1.3E-11 2.8E-16 122.2 9.6 129 268-406 27-163 (249)
247 TIGR00484 EF-G translation elo 99.3 2.9E-11 6.3E-16 135.7 13.1 129 269-418 7-155 (689)
248 COG2229 Predicted GTPase [Gene 99.3 9.8E-11 2.1E-15 109.1 13.9 154 272-444 10-176 (187)
249 TIGR02034 CysN sulfate adenyly 99.3 3.9E-11 8.4E-16 126.7 12.8 143 274-436 2-187 (406)
250 KOG0395 Ras-related GTPase [Ge 99.2 4.1E-11 8.8E-16 114.6 11.2 157 273-445 4-164 (196)
251 PF00350 Dynamin_N: Dynamin fa 99.2 2.3E-11 4.9E-16 111.6 9.2 68 327-402 101-168 (168)
252 KOG0074 GTP-binding ADP-ribosy 99.2 1E-11 2.3E-16 110.8 6.6 152 273-445 18-178 (185)
253 PRK12739 elongation factor G; 99.2 3.5E-11 7.5E-16 135.0 11.7 128 270-418 6-153 (691)
254 PRK00007 elongation factor G; 99.2 6.5E-11 1.4E-15 132.9 12.6 128 270-418 8-155 (693)
255 PLN03126 Elongation factor Tu; 99.2 7.7E-11 1.7E-15 126.7 12.3 132 270-422 79-231 (478)
256 TIGR00991 3a0901s02IAP34 GTP-b 99.2 5.3E-11 1.2E-15 120.5 9.8 126 271-406 37-167 (313)
257 PRK13768 GTPase; Provisional 99.2 1.1E-10 2.4E-15 115.8 11.8 115 327-445 97-246 (253)
258 TIGR00503 prfC peptide chain r 99.2 1.3E-10 2.7E-15 126.5 12.6 131 268-419 7-161 (527)
259 PRK00741 prfC peptide chain re 99.2 1.6E-10 3.5E-15 125.6 13.3 130 268-418 6-159 (526)
260 TIGR02836 spore_IV_A stage IV 99.2 4E-10 8.7E-15 117.2 14.7 124 273-404 18-192 (492)
261 COG0532 InfB Translation initi 99.1 3.2E-10 6.9E-15 120.5 13.0 152 273-444 6-168 (509)
262 PTZ00141 elongation factor 1- 99.1 4.1E-10 8.9E-15 120.3 12.9 145 272-436 7-203 (446)
263 PTZ00327 eukaryotic translatio 99.1 7.1E-10 1.5E-14 118.7 14.7 162 273-445 35-232 (460)
264 KOG3883 Ras family small GTPas 99.1 9.2E-10 2E-14 99.7 12.9 166 271-448 8-177 (198)
265 smart00053 DYNc Dynamin, GTPas 99.1 8E-10 1.7E-14 108.8 13.3 132 271-407 25-207 (240)
266 KOG0077 Vesicle coat complex C 99.1 2.1E-10 4.6E-15 105.0 8.2 119 270-407 18-136 (193)
267 PF04548 AIG1: AIG1 family; I 99.1 2.7E-10 5.8E-15 109.9 9.5 161 274-444 2-184 (212)
268 PRK13351 elongation factor G; 99.1 4.5E-10 9.7E-15 126.1 12.2 128 270-418 6-153 (687)
269 KOG0090 Signal recognition par 99.1 1.8E-10 3.9E-15 109.6 7.5 117 273-407 39-160 (238)
270 KOG0097 GTPase Rab14, small G 99.1 5E-10 1.1E-14 100.0 8.9 160 269-445 8-172 (215)
271 PTZ00099 rab6; Provisional 99.1 6.1E-10 1.3E-14 104.5 9.9 111 328-447 30-143 (176)
272 KOG1954 Endocytosis/signaling 99.1 9.6E-10 2.1E-14 111.8 11.7 145 273-422 59-241 (532)
273 KOG0462 Elongation factor-type 99.1 1.6E-09 3.5E-14 114.8 13.2 160 269-446 57-235 (650)
274 cd01882 BMS1 Bms1. Bms1 is an 99.0 1.8E-09 3.8E-14 105.2 12.5 110 272-408 39-149 (225)
275 KOG0083 GTPase Rab26/Rab37, sm 99.0 9E-11 2E-15 103.9 2.7 153 277-446 2-160 (192)
276 KOG1145 Mitochondrial translat 99.0 3.1E-09 6.7E-14 112.7 13.7 155 269-445 150-315 (683)
277 COG0481 LepA Membrane GTPase L 99.0 2.1E-09 4.5E-14 112.4 11.8 163 269-447 6-187 (603)
278 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.8E-09 4E-14 105.7 10.6 160 274-446 1-176 (232)
279 KOG1532 GTPase XAB1, interacts 99.0 1.7E-09 3.7E-14 106.5 9.7 118 328-450 117-268 (366)
280 PLN00043 elongation factor 1-a 99.0 3.2E-09 6.9E-14 113.5 12.4 146 270-435 5-202 (447)
281 KOG0081 GTPase Rab27, small G 99.0 4.5E-10 9.8E-15 102.2 4.9 162 271-443 8-178 (219)
282 PF03029 ATP_bind_1: Conserved 98.9 1.1E-09 2.4E-14 107.7 6.2 112 328-443 92-234 (238)
283 TIGR00490 aEF-2 translation el 98.9 3.3E-09 7.2E-14 119.7 10.4 120 270-406 17-152 (720)
284 PTZ00416 elongation factor 2; 98.9 7.4E-09 1.6E-13 118.5 13.3 123 270-405 17-157 (836)
285 KOG0393 Ras-related small GTPa 98.9 2.6E-09 5.7E-14 101.6 7.9 158 273-447 5-180 (198)
286 KOG4252 GTP-binding protein [S 98.9 1.1E-09 2.4E-14 101.4 4.9 159 268-445 16-180 (246)
287 PRK12740 elongation factor G; 98.9 5.7E-09 1.2E-13 116.9 11.2 120 278-418 1-140 (668)
288 PRK09435 membrane ATPase/prote 98.9 1.4E-08 3E-13 104.4 12.3 99 327-445 149-259 (332)
289 PLN00116 translation elongatio 98.9 8.1E-09 1.8E-13 118.3 11.5 122 271-405 18-163 (843)
290 KOG0072 GTP-binding ADP-ribosy 98.9 5.1E-09 1.1E-13 94.0 7.3 152 274-445 20-178 (182)
291 cd04178 Nucleostemin_like Nucl 98.9 2.8E-09 6E-14 99.9 5.6 57 270-337 115-172 (172)
292 TIGR00750 lao LAO/AO transport 98.9 7.9E-09 1.7E-13 104.9 9.3 99 327-445 127-237 (300)
293 TIGR00993 3a0901s04IAP86 chlor 98.8 8.8E-09 1.9E-13 112.6 9.8 127 269-406 115-250 (763)
294 PF03308 ArgK: ArgK protein; 98.8 7.5E-09 1.6E-13 102.0 6.9 98 328-445 123-229 (266)
295 COG5256 TEF1 Translation elong 98.8 2.4E-08 5.1E-13 103.6 10.5 147 272-437 7-202 (428)
296 cd01858 NGP_1 NGP-1. Autoanti 98.8 6.9E-09 1.5E-13 95.0 5.9 54 273-337 103-157 (157)
297 PRK07560 elongation factor EF- 98.8 2.2E-08 4.8E-13 113.3 10.8 119 270-405 18-152 (731)
298 PRK14845 translation initiatio 98.8 5.7E-08 1.2E-12 112.3 13.6 146 284-442 473-669 (1049)
299 COG4917 EutP Ethanolamine util 98.8 4.5E-08 9.8E-13 86.2 9.6 140 273-444 2-144 (148)
300 PF05049 IIGP: Interferon-indu 98.7 2.3E-08 5E-13 103.9 7.3 158 271-449 34-221 (376)
301 COG1161 Predicted GTPases [Gen 98.7 1.4E-08 2.9E-13 104.3 5.5 59 271-340 131-190 (322)
302 cd01855 YqeH YqeH. YqeH is an 98.7 1.9E-08 4E-13 94.9 5.4 54 273-337 128-190 (190)
303 PF00735 Septin: Septin; Inte 98.7 9.6E-08 2.1E-12 96.3 10.4 140 273-425 5-178 (281)
304 KOG1707 Predicted Ras related/ 98.7 8.4E-08 1.8E-12 102.8 10.1 157 270-444 7-173 (625)
305 PRK09563 rbgA GTPase YlqF; Rev 98.6 4E-08 8.8E-13 99.2 6.4 60 271-341 120-180 (287)
306 COG1703 ArgK Putative periplas 98.6 9.1E-08 2E-12 95.8 8.7 99 328-446 145-254 (323)
307 cd01849 YlqF_related_GTPase Yl 98.6 4.5E-08 9.8E-13 89.5 5.5 56 271-337 99-155 (155)
308 COG0480 FusA Translation elong 98.6 2.1E-07 4.6E-12 103.9 11.6 131 269-419 7-157 (697)
309 TIGR03597 GTPase_YqeH ribosome 98.6 6.5E-08 1.4E-12 100.8 7.0 86 273-369 155-249 (360)
310 TIGR00073 hypB hydrogenase acc 98.6 3.1E-07 6.6E-12 88.2 11.0 154 271-444 21-205 (207)
311 KOG4423 GTP-binding protein-li 98.6 1.1E-08 2.3E-13 95.6 0.6 177 271-459 24-207 (229)
312 TIGR03596 GTPase_YlqF ribosome 98.6 5.9E-08 1.3E-12 97.4 5.9 59 271-340 117-176 (276)
313 KOG1144 Translation initiation 98.6 3.5E-07 7.6E-12 99.9 11.8 158 273-443 476-684 (1064)
314 COG1217 TypA Predicted membran 98.6 4.7E-07 1E-11 94.9 12.2 155 271-446 4-195 (603)
315 KOG0461 Selenocysteine-specifi 98.5 9.6E-07 2.1E-11 89.6 13.1 159 273-447 8-194 (522)
316 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 9.8E-08 2.1E-12 85.9 5.4 54 274-338 85-139 (141)
317 COG5257 GCD11 Translation init 98.5 5.8E-07 1.3E-11 90.6 11.3 165 273-448 11-204 (415)
318 KOG1547 Septin CDC10 and relat 98.5 5.3E-07 1.2E-11 87.6 10.4 143 273-427 47-222 (336)
319 KOG1424 Predicted GTP-binding 98.5 8.4E-08 1.8E-12 101.5 4.3 60 270-340 312-372 (562)
320 COG4108 PrfC Peptide chain rel 98.5 8.2E-07 1.8E-11 92.6 11.2 130 268-418 8-161 (528)
321 KOG2486 Predicted GTPase [Gene 98.5 2.3E-07 4.9E-12 91.9 6.2 156 271-443 135-313 (320)
322 PRK13796 GTPase YqeH; Provisio 98.5 1.5E-07 3.3E-12 98.2 5.0 56 273-339 161-222 (365)
323 COG3276 SelB Selenocysteine-sp 98.4 2.3E-06 5E-11 89.6 13.4 152 274-445 2-161 (447)
324 TIGR00101 ureG urease accessor 98.4 1.9E-06 4.1E-11 82.6 11.8 98 328-445 93-195 (199)
325 COG5019 CDC3 Septin family pro 98.4 4.3E-06 9.4E-11 85.9 14.0 130 273-409 24-179 (373)
326 KOG0458 Elongation factor 1 al 98.4 1.9E-06 4.1E-11 92.6 11.8 150 269-437 174-373 (603)
327 PRK10463 hydrogenase nickel in 98.4 1.8E-07 3.8E-12 94.4 3.3 54 391-444 229-287 (290)
328 COG2895 CysN GTPases - Sulfate 98.4 1.4E-06 3.1E-11 88.7 9.6 128 270-418 4-166 (431)
329 cd01856 YlqF YlqF. Proteins o 98.4 5.5E-07 1.2E-11 83.7 5.9 56 271-337 114-170 (171)
330 KOG0468 U5 snRNP-specific prot 98.3 1.1E-06 2.3E-11 95.3 7.3 122 271-405 127-262 (971)
331 cd03112 CobW_like The function 98.3 1.6E-06 3.4E-11 80.0 6.6 70 327-404 87-158 (158)
332 cd01851 GBP Guanylate-binding 98.3 3.1E-06 6.7E-11 82.6 8.8 93 271-369 6-103 (224)
333 KOG2655 Septin family protein 98.2 1.9E-05 4E-10 81.7 14.1 125 273-410 22-176 (366)
334 cd01858 NGP_1 NGP-1. Autoanti 98.2 9.1E-06 2E-10 74.3 10.0 89 352-445 3-94 (157)
335 PRK12288 GTPase RsgA; Reviewed 98.2 1.5E-06 3.2E-11 90.2 5.1 55 275-340 208-270 (347)
336 COG0050 TufB GTPases - transla 98.2 1.4E-05 3E-10 80.0 11.3 134 270-424 10-164 (394)
337 cd01859 MJ1464 MJ1464. This f 98.2 2.7E-06 5.8E-11 77.5 6.0 55 272-337 101-156 (156)
338 KOG0448 Mitofusin 1 GTPase, in 98.2 1.1E-05 2.4E-10 88.1 11.1 140 270-420 107-290 (749)
339 KOG2484 GTPase [General functi 98.2 1.4E-06 3.1E-11 90.0 3.9 64 268-342 248-312 (435)
340 PRK12289 GTPase RsgA; Reviewed 98.2 1.9E-06 4.1E-11 89.6 4.9 55 275-340 175-237 (352)
341 KOG3886 GTP-binding protein [S 98.1 3.8E-06 8.3E-11 81.3 5.9 126 273-407 5-131 (295)
342 KOG2423 Nucleolar GTPase [Gene 98.1 1.5E-06 3.3E-11 89.6 3.2 60 270-340 305-365 (572)
343 KOG1673 Ras GTPases [General f 98.1 1E-05 2.3E-10 73.8 8.0 154 273-449 21-189 (205)
344 cd01855 YqeH YqeH. YqeH is an 98.1 1.2E-05 2.6E-10 75.8 8.6 90 348-445 25-124 (190)
345 TIGR00157 ribosome small subun 98.1 3E-06 6.4E-11 83.8 4.1 55 274-340 122-184 (245)
346 TIGR00157 ribosome small subun 98.1 2E-05 4.4E-10 77.9 9.9 86 354-444 33-121 (245)
347 cd01856 YlqF YlqF. Proteins o 98.0 1.9E-05 4.1E-10 73.4 8.6 87 350-445 12-100 (171)
348 cd01859 MJ1464 MJ1464. This f 98.0 2.3E-05 5E-10 71.3 8.9 88 351-445 5-95 (156)
349 KOG0096 GTPase Ran/TC4/GSP1 (n 98.0 1E-05 2.2E-10 76.1 6.4 152 271-446 9-169 (216)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 3.1E-05 6.7E-10 69.6 8.9 77 350-431 4-82 (141)
351 PF03193 DUF258: Protein of un 97.9 7.4E-06 1.6E-10 76.0 3.8 57 273-340 36-100 (161)
352 COG5192 BMS1 GTP-binding prote 97.9 1.9E-05 4E-10 84.5 7.2 118 274-418 71-189 (1077)
353 PRK00098 GTPase RsgA; Reviewed 97.9 1.2E-05 2.7E-10 81.6 4.7 56 273-339 165-228 (298)
354 TIGR03596 GTPase_YlqF ribosome 97.8 5.7E-05 1.2E-09 75.9 8.7 87 350-445 14-102 (276)
355 cd01849 YlqF_related_GTPase Yl 97.8 9E-05 2E-09 67.6 9.2 80 359-444 1-83 (155)
356 PRK12289 GTPase RsgA; Reviewed 97.8 0.00011 2.3E-09 76.5 10.4 84 354-443 86-172 (352)
357 COG0378 HypB Ni2+-binding GTPa 97.8 3.5E-05 7.5E-10 73.2 5.6 76 359-444 119-199 (202)
358 PF02492 cobW: CobW/HypB/UreG, 97.8 2.5E-05 5.3E-10 73.3 4.4 85 327-421 85-170 (178)
359 PRK10416 signal recognition pa 97.8 0.00015 3.3E-09 74.5 10.4 100 328-439 198-303 (318)
360 PRK00098 GTPase RsgA; Reviewed 97.8 0.00012 2.5E-09 74.6 9.4 84 355-443 78-164 (298)
361 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00011 2.4E-09 74.3 9.1 98 333-445 6-105 (287)
362 TIGR01425 SRP54_euk signal rec 97.7 0.00022 4.9E-09 75.8 11.5 124 273-407 101-254 (429)
363 KOG2485 Conserved ATP/GTP bind 97.7 5E-05 1.1E-09 76.6 5.2 65 271-343 142-212 (335)
364 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5E-05 1.1E-09 76.8 4.8 56 273-339 162-225 (287)
365 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00012 2.6E-09 56.1 5.6 48 351-403 9-58 (58)
366 KOG3859 Septins (P-loop GTPase 97.6 0.00024 5.3E-09 70.7 9.2 125 272-409 42-193 (406)
367 COG0523 Putative GTPases (G3E 97.6 0.0004 8.7E-09 71.5 10.7 84 328-424 86-176 (323)
368 TIGR00064 ftsY signal recognit 97.6 0.00041 8.8E-09 69.8 10.5 99 328-438 156-260 (272)
369 COG1162 Predicted GTPases [Gen 97.6 5.5E-05 1.2E-09 76.5 4.2 56 274-340 166-229 (301)
370 cd03114 ArgK-like The function 97.6 0.00054 1.2E-08 62.6 10.3 57 327-403 92-148 (148)
371 TIGR02475 CobW cobalamin biosy 97.6 0.00031 6.7E-09 72.9 9.7 26 270-295 2-27 (341)
372 KOG0447 Dynamin-like GTP bindi 97.6 0.00068 1.5E-08 72.7 12.0 132 271-407 307-494 (980)
373 KOG0467 Translation elongation 97.6 0.00035 7.5E-09 77.4 9.9 115 271-404 8-136 (887)
374 TIGR03348 VI_IcmF type VI secr 97.5 0.0002 4.2E-09 85.4 8.2 141 269-415 108-267 (1169)
375 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00045 9.7E-09 69.9 9.0 83 355-443 76-161 (287)
376 KOG1707 Predicted Ras related/ 97.5 0.00094 2E-08 72.3 11.7 156 269-445 422-582 (625)
377 PRK14974 cell division protein 97.5 0.00037 8E-09 72.1 8.3 99 328-439 224-323 (336)
378 KOG1533 Predicted GTPase [Gene 97.5 0.00026 5.6E-09 69.1 6.7 77 327-406 97-177 (290)
379 PRK11537 putative GTP-binding 97.4 0.00052 1.1E-08 70.6 9.1 79 328-421 92-176 (318)
380 PRK13796 GTPase YqeH; Provisio 97.4 0.00072 1.6E-08 70.8 10.2 86 351-444 62-157 (365)
381 KOG0465 Mitochondrial elongati 97.4 0.00022 4.9E-09 77.3 6.3 125 268-407 35-171 (721)
382 KOG0464 Elongation factor G [T 97.4 0.0002 4.3E-09 74.5 4.9 127 271-418 36-182 (753)
383 PF00448 SRP54: SRP54-type pro 97.4 0.00038 8.3E-09 66.6 6.5 95 328-434 85-179 (196)
384 PRK14722 flhF flagellar biosyn 97.3 0.0006 1.3E-08 71.5 8.3 163 269-439 134-325 (374)
385 KOG1534 Putative transcription 97.3 0.00025 5.4E-09 68.2 4.6 79 326-407 97-179 (273)
386 cd03110 Fer4_NifH_child This p 97.3 0.0044 9.5E-08 57.6 12.7 81 327-424 93-173 (179)
387 PRK12288 GTPase RsgA; Reviewed 97.3 0.0017 3.7E-08 67.5 10.8 84 356-444 119-206 (347)
388 PRK12727 flagellar biosynthesi 97.3 0.00083 1.8E-08 73.1 8.4 156 270-439 348-528 (559)
389 KOG0460 Mitochondrial translat 97.2 0.00097 2.1E-08 68.2 8.1 133 271-424 53-206 (449)
390 PRK11889 flhF flagellar biosyn 97.2 0.00093 2E-08 70.4 8.3 151 273-440 242-422 (436)
391 KOG1143 Predicted translation 97.2 0.0021 4.5E-08 66.5 10.3 141 273-424 168-338 (591)
392 cd03115 SRP The signal recogni 97.2 0.0018 3.8E-08 60.0 8.8 71 328-408 84-155 (173)
393 PRK05703 flhF flagellar biosyn 97.2 0.00095 2.1E-08 71.3 7.8 157 273-440 222-402 (424)
394 PRK12726 flagellar biosynthesi 97.2 0.0012 2.6E-08 69.2 8.1 153 271-436 205-383 (407)
395 PRK14723 flhF flagellar biosyn 97.1 0.0012 2.6E-08 74.7 8.5 151 273-434 186-362 (767)
396 TIGR03597 GTPase_YqeH ribosome 97.1 0.0012 2.6E-08 69.0 7.8 82 355-444 61-151 (360)
397 cd00066 G-alpha G protein alph 97.1 0.00068 1.5E-08 69.6 5.8 71 328-406 162-242 (317)
398 cd02038 FleN-like FleN is a me 97.1 0.0062 1.4E-07 54.7 10.9 105 277-405 5-110 (139)
399 PRK12724 flagellar biosynthesi 97.1 0.0016 3.5E-08 69.1 8.0 104 328-442 301-406 (432)
400 PRK01889 GTPase RsgA; Reviewed 97.0 0.0031 6.7E-08 65.9 9.7 84 355-443 110-194 (356)
401 PRK14721 flhF flagellar biosyn 97.0 0.0022 4.8E-08 68.2 8.4 154 271-439 190-370 (420)
402 smart00275 G_alpha G protein a 96.9 0.0014 3E-08 68.1 6.2 71 328-406 185-265 (342)
403 PRK06995 flhF flagellar biosyn 96.9 0.0021 4.5E-08 69.6 7.7 151 272-434 256-430 (484)
404 PRK12723 flagellar biosynthesi 96.9 0.0036 7.7E-08 66.1 9.1 101 328-439 256-356 (388)
405 PRK00771 signal recognition pa 96.9 0.0034 7.4E-08 67.2 8.9 69 328-407 177-247 (437)
406 KOG0466 Translation initiation 96.9 0.0021 4.4E-08 65.0 6.4 112 328-450 126-245 (466)
407 COG5258 GTPBP1 GTPase [General 96.9 0.005 1.1E-07 64.0 9.3 160 270-442 115-335 (527)
408 smart00010 small_GTPase Small 96.8 0.0042 9.2E-08 53.1 7.4 91 273-406 1-91 (124)
409 KOG3905 Dynein light intermedi 96.8 0.016 3.6E-07 59.1 12.4 55 391-445 221-289 (473)
410 PRK06731 flhF flagellar biosyn 96.8 0.0045 9.8E-08 62.2 8.1 156 272-440 75-256 (270)
411 KOG0469 Elongation factor 2 [T 96.8 0.0028 6.1E-08 67.6 6.6 136 270-420 17-184 (842)
412 cd04178 Nucleostemin_like Nucl 96.7 0.01 2.2E-07 55.6 9.8 58 359-421 1-58 (172)
413 COG3640 CooC CO dehydrogenase 96.7 0.0048 1E-07 60.4 7.7 46 355-405 153-198 (255)
414 COG3523 IcmF Type VI protein s 96.7 0.0048 1E-07 72.7 9.0 136 272-415 125-280 (1188)
415 PRK01889 GTPase RsgA; Reviewed 96.7 0.001 2.2E-08 69.5 3.1 26 272-297 195-220 (356)
416 PF05783 DLIC: Dynein light in 96.7 0.018 3.9E-07 62.3 12.1 54 392-445 196-263 (472)
417 COG1419 FlhF Flagellar GTP-bin 96.6 0.0085 1.8E-07 63.1 8.8 156 272-439 203-382 (407)
418 KOG3887 Predicted small GTPase 96.6 0.0076 1.7E-07 59.2 7.7 121 273-407 28-150 (347)
419 PRK10867 signal recognition pa 96.6 0.006 1.3E-07 65.3 7.7 22 272-293 100-121 (433)
420 PF00004 AAA: ATPase family as 96.5 0.0055 1.2E-07 53.1 6.1 21 275-295 1-21 (132)
421 TIGR03263 guanyl_kin guanylate 96.5 0.0045 9.8E-08 57.4 5.6 41 274-314 3-44 (180)
422 PF07015 VirC1: VirC1 protein; 96.4 0.014 3.1E-07 57.2 8.7 102 328-439 85-187 (231)
423 cd03111 CpaE_like This protein 96.4 0.016 3.5E-07 49.7 8.0 101 278-401 6-106 (106)
424 TIGR00959 ffh signal recogniti 96.4 0.013 2.9E-07 62.6 8.8 69 328-406 184-253 (428)
425 cd02036 MinD Bacterial cell di 96.3 0.051 1.1E-06 49.8 11.5 65 328-406 64-128 (179)
426 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.022 4.7E-07 46.1 8.0 71 275-371 2-72 (99)
427 cd00071 GMPK Guanosine monopho 96.3 0.0061 1.3E-07 54.8 4.8 41 275-315 2-44 (137)
428 PRK14737 gmk guanylate kinase; 96.2 0.0061 1.3E-07 57.8 4.7 43 275-317 7-50 (186)
429 PRK13695 putative NTPase; Prov 96.1 0.08 1.7E-06 49.1 11.8 23 273-295 1-23 (174)
430 PF00005 ABC_tran: ABC transpo 96.1 0.005 1.1E-07 54.3 3.4 33 264-296 3-35 (137)
431 cd02042 ParA ParA and ParB of 96.1 0.026 5.7E-07 47.5 7.6 71 275-369 2-73 (104)
432 KOG2484 GTPase [General functi 95.9 0.019 4.2E-07 60.0 6.8 70 347-421 136-205 (435)
433 COG1134 TagH ABC-type polysacc 95.7 0.0086 1.9E-07 59.0 3.3 32 264-295 45-76 (249)
434 PRK00300 gmk guanylate kinase; 95.6 0.017 3.8E-07 54.7 4.9 42 274-315 7-49 (205)
435 KOG1424 Predicted GTP-binding 95.5 0.026 5.6E-07 60.8 6.5 72 347-424 164-236 (562)
436 COG0194 Gmk Guanylate kinase [ 95.5 0.011 2.3E-07 56.2 3.1 44 273-317 5-49 (191)
437 PRK14738 gmk guanylate kinase; 95.4 0.018 3.9E-07 55.3 4.5 42 274-315 15-57 (206)
438 KOG0459 Polypeptide release fa 95.4 0.012 2.5E-07 61.7 3.2 102 327-439 157-279 (501)
439 PF09547 Spore_IV_A: Stage IV 95.1 0.19 4.2E-06 53.4 11.3 22 273-294 18-39 (492)
440 KOG2749 mRNA cleavage and poly 95.1 0.076 1.7E-06 55.0 8.1 45 268-312 99-144 (415)
441 cd00009 AAA The AAA+ (ATPases 95.1 0.071 1.5E-06 45.8 6.9 22 274-295 21-42 (151)
442 KOG0463 GTP-binding protein GP 95.1 0.11 2.3E-06 54.2 8.9 23 273-295 134-156 (641)
443 PF13207 AAA_17: AAA domain; P 95.0 0.018 3.9E-07 49.6 2.9 22 274-295 1-22 (121)
444 COG0411 LivG ABC-type branched 95.0 0.0055 1.2E-07 60.3 -0.4 32 264-295 22-53 (250)
445 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.019 4.1E-07 55.1 3.2 32 265-296 23-54 (218)
446 TIGR00960 3a0501s02 Type II (G 95.0 0.019 4.1E-07 55.0 3.3 33 264-296 21-53 (216)
447 cd03261 ABC_Org_Solvent_Resist 95.0 0.019 4.1E-07 55.8 3.3 32 265-296 19-50 (235)
448 cd03264 ABC_drug_resistance_li 95.0 0.016 3.5E-07 55.3 2.7 31 265-296 19-49 (211)
449 COG1162 Predicted GTPases [Gen 95.0 0.23 5E-06 50.6 10.9 86 355-445 77-166 (301)
450 TIGR03608 L_ocin_972_ABC putat 94.9 0.02 4.3E-07 54.4 3.1 32 265-296 17-48 (206)
451 cd03226 ABC_cobalt_CbiO_domain 94.9 0.021 4.6E-07 54.3 3.2 32 265-296 19-50 (205)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.023 4.9E-07 51.4 3.2 33 264-296 18-50 (144)
453 cd03225 ABC_cobalt_CbiO_domain 94.9 0.02 4.3E-07 54.6 3.0 32 265-296 20-51 (211)
454 COG4559 ABC-type hemin transpo 94.8 0.02 4.4E-07 55.5 2.9 32 265-296 20-51 (259)
455 cd03229 ABC_Class3 This class 94.8 0.024 5.1E-07 52.9 3.3 33 264-296 18-50 (178)
456 TIGR02673 FtsE cell division A 94.8 0.021 4.6E-07 54.5 3.0 32 265-296 21-52 (214)
457 cd03216 ABC_Carb_Monos_I This 94.8 0.026 5.5E-07 52.1 3.4 33 264-296 18-50 (163)
458 cd03265 ABC_DrrA DrrA is the A 94.8 0.023 4.9E-07 54.7 3.1 32 265-296 19-50 (220)
459 cd03224 ABC_TM1139_LivF_branch 94.8 0.024 5.2E-07 54.4 3.2 33 264-296 18-50 (222)
460 TIGR01166 cbiO cobalt transpor 94.8 0.023 4.9E-07 53.4 3.0 31 266-296 12-42 (190)
461 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.024 5.2E-07 54.5 3.2 33 264-296 22-54 (220)
462 cd03269 ABC_putative_ATPase Th 94.7 0.026 5.6E-07 53.8 3.3 32 265-296 19-50 (210)
463 COG1136 SalX ABC-type antimicr 94.7 0.022 4.8E-07 55.8 2.9 32 265-296 24-55 (226)
464 cd03259 ABC_Carb_Solutes_like 94.7 0.023 5E-07 54.3 3.0 32 265-296 19-50 (213)
465 cd03301 ABC_MalK_N The N-termi 94.7 0.024 5.3E-07 54.1 3.1 32 265-296 19-50 (213)
466 TIGR02211 LolD_lipo_ex lipopro 94.7 0.026 5.6E-07 54.2 3.3 32 265-296 24-55 (221)
467 cd03260 ABC_PstB_phosphate_tra 94.7 0.026 5.6E-07 54.5 3.2 32 265-296 19-50 (227)
468 cd03292 ABC_FtsE_transporter F 94.7 0.027 5.8E-07 53.8 3.3 32 265-296 20-51 (214)
469 cd03263 ABC_subfamily_A The AB 94.7 0.024 5.3E-07 54.4 3.0 32 265-296 21-52 (220)
470 cd03257 ABC_NikE_OppD_transpor 94.6 0.023 5.1E-07 54.7 2.9 32 265-296 24-55 (228)
471 PRK13541 cytochrome c biogenes 94.6 0.025 5.5E-07 53.5 3.0 32 265-296 19-50 (195)
472 cd03218 ABC_YhbG The ABC trans 94.6 0.025 5.4E-07 54.8 2.9 32 265-296 19-50 (232)
473 cd03238 ABC_UvrA The excision 94.6 0.025 5.4E-07 53.3 2.8 30 265-294 14-43 (176)
474 PRK13540 cytochrome c biogenes 94.6 0.028 6.2E-07 53.3 3.3 33 264-296 19-51 (200)
475 TIGR01189 ccmA heme ABC export 94.6 0.029 6.2E-07 53.1 3.3 33 264-296 18-50 (198)
476 COG1116 TauB ABC-type nitrate/ 94.6 0.026 5.5E-07 55.9 2.9 32 265-296 22-53 (248)
477 TIGR01978 sufC FeS assembly AT 94.6 0.026 5.7E-07 54.9 3.0 31 265-295 19-49 (243)
478 KOG0446 Vacuolar sorting prote 94.6 0.018 3.8E-07 64.8 2.0 101 269-369 26-180 (657)
479 cd03235 ABC_Metallic_Cations A 94.5 0.027 5.8E-07 53.9 2.9 32 265-296 18-49 (213)
480 cd03266 ABC_NatA_sodium_export 94.5 0.027 5.9E-07 54.0 3.0 32 265-296 24-55 (218)
481 COG3840 ThiQ ABC-type thiamine 94.5 0.031 6.8E-07 53.2 3.2 29 268-296 21-49 (231)
482 cd03262 ABC_HisP_GlnQ_permease 94.5 0.027 5.9E-07 53.7 2.9 31 266-296 20-50 (213)
483 PRK11248 tauB taurine transpor 94.5 0.03 6.4E-07 55.5 3.3 33 264-296 19-51 (255)
484 cd01130 VirB11-like_ATPase Typ 94.5 0.026 5.6E-07 53.2 2.7 30 266-295 19-48 (186)
485 PRK11629 lolD lipoprotein tran 94.5 0.031 6.7E-07 54.3 3.3 32 265-296 28-59 (233)
486 PRK14242 phosphate transporter 94.5 0.028 6E-07 55.3 3.0 31 265-295 25-55 (253)
487 PF00625 Guanylate_kin: Guanyl 94.5 0.029 6.3E-07 52.6 3.0 43 275-317 5-49 (183)
488 TIGR02315 ABC_phnC phosphonate 94.5 0.028 6.1E-07 54.8 3.0 32 265-296 21-52 (243)
489 cd03215 ABC_Carb_Monos_II This 94.5 0.029 6.3E-07 52.5 3.0 32 265-296 19-50 (182)
490 TIGR02323 CP_lyasePhnK phospho 94.5 0.029 6.3E-07 55.1 3.1 33 264-296 21-53 (253)
491 cd03214 ABC_Iron-Siderophores_ 94.5 0.032 6.9E-07 52.1 3.2 33 264-296 17-49 (180)
492 cd03247 ABCC_cytochrome_bd The 94.4 0.033 7.2E-07 51.8 3.3 33 264-296 20-52 (178)
493 cd03219 ABC_Mj1267_LivG_branch 94.4 0.027 5.9E-07 54.6 2.8 32 265-296 19-50 (236)
494 PRK10908 cell division protein 94.4 0.032 6.9E-07 53.8 3.3 33 264-296 20-52 (222)
495 PF13555 AAA_29: P-loop contai 94.4 0.035 7.6E-07 43.4 2.8 21 274-294 25-45 (62)
496 COG4586 ABC-type uncharacteriz 94.4 0.041 8.9E-07 55.3 4.0 32 264-295 42-73 (325)
497 cd03258 ABC_MetN_methionine_tr 94.4 0.03 6.5E-07 54.3 3.0 32 265-296 24-55 (233)
498 PRK14262 phosphate ABC transpo 94.4 0.033 7.1E-07 54.7 3.3 33 264-296 21-53 (250)
499 COG3638 ABC-type phosphate/pho 94.4 0.034 7.3E-07 54.7 3.2 32 264-295 22-53 (258)
500 cd03254 ABCC_Glucan_exporter_l 94.4 0.03 6.5E-07 54.1 3.0 32 265-296 22-53 (229)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.7e-87 Score=666.15 Aligned_cols=326 Identities=45% Similarity=0.742 Sum_probs=301.2
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 011645 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (480)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (480)
++|+|+++|+|+||+||||||| |||||| +|+|||||| |||+||||||+||++++||.+
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VS--------------FrREK~----vp~GGPdGG----dGG~GGsV~~~ad~~l~TL~d 58 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVS--------------FRREKF----VPKGGPDGG----DGGRGGSVIFEADENLNTLID 58 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEE--------------EEhhhc----CccCCCCCC----CCCCCceEEEEEcCCcccHhh
Confidence 5899999999999999999997 889998 899999998 999999999999999999999
Q ss_pred ccccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEcc-CCceeeccCCCCceEEeecCCCCCCCCCCccc
Q 011645 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPE 232 (480)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~~-~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~ 232 (480)
|+++++|+|++|+||. +++|+|++|+|++|+||+||+|+|. ++++|+||++++|++++|+||+||+||.+|++
T Consensus 59 ~r~~~~f~A~~G~~G~------~~~~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks 132 (369)
T COG0536 59 FRYKKHFKAENGENGM------GRNRTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKS 132 (369)
T ss_pred hccceEEEccCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcC
Confidence 9999999999999985 3899999999999999999999996 58999999999999999999999999998865
Q ss_pred hhhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce
Q 011645 233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 312 (480)
Q Consensus 233 ~~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g 312 (480)
+. +++|++++.|++||++.++||||.+++|+|||+|||||||||+++++++|+|++|||||+.|++|
T Consensus 133 ~~-------------nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG 199 (369)
T COG0536 133 SV-------------NRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG 199 (369)
T ss_pred cc-------------cCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc
Confidence 32 25788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCC---CChhhHHHHHHHHHhhCCC
Q 011645 313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPD 389 (480)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~---~~~~~~~~l~~eL~~~~~~ 389 (480)
++..+. ...|+++|+||+|++|+++.||+..||+||+||.+++||||++.. ++.++++.++.||+.|.+.
T Consensus 200 vV~~~~-------~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~ 272 (369)
T COG0536 200 VVRVDG-------GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK 272 (369)
T ss_pred EEEecC-------CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH
Confidence 998632 247999999999999999999999999999999999999999974 4799999999999999999
Q ss_pred CCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc-Cce---eeecccccCHHHHHHHHHHhcCc
Q 011645 390 YLERPFIVVLNKIDLPEARDRLQSLTEEILKI-GCD---KVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 390 l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~-g~~---~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+.++|.+||+||+|++.+++.++.+.+.+.+. ++. ++|+.+++|+++++..+.+....
T Consensus 273 L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 273 LAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 99999999999999888888888888887754 322 28999999999999988876644
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=2e-77 Score=612.70 Aligned_cols=323 Identities=42% Similarity=0.684 Sum_probs=290.9
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 011645 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (480)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (480)
+|+|+++|+|+||+|||||+| |||||| +++|||||| |||+||||||+||++++||.+|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVS--------------FRREKF----IPFGGPDGG----DGGRGGSVILEADENLNTLIDF 58 (335)
T ss_pred CceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 599999999999999999997 788887 789999998 9999999999999999999999
Q ss_pred cccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccch
Q 011645 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (480)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~ 233 (480)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++|+||.+++|+++||+||+||+||.+|+++
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~ 132 (335)
T PRK12299 59 RYKRHFKAENGENGM------GRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSS 132 (335)
T ss_pred cCccEEECCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccc
Confidence 999999999999986 478899999999999999999998 5789999999999999999999999999887643
Q ss_pred hhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee
Q 011645 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (480)
Q Consensus 234 ~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~ 313 (480)
+ +++|++++.|++||+++++||||.+++|+|||+||||||||||+|+++++++++|||||+.|+.+.
T Consensus 133 ---------~----~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~ 199 (335)
T PRK12299 133 ---------T----NRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV 199 (335)
T ss_pred ---------c----CCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE
Confidence 2 246889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCC
Q 011645 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (480)
Q Consensus 314 v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (480)
+.+.. ..++++|||||+++++++++++++.|++|+++|+++|||||+++.+++++++.|.+||..|.+.+.++
T Consensus 200 v~~~~-------~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~k 272 (335)
T PRK12299 200 VRVDD-------YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADK 272 (335)
T ss_pred EEeCC-------CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccC
Confidence 87632 13699999999999999999999999999999999999999998878999999999999998777789
Q ss_pred CEEEEEeCCCCcChHHHHHH-HHHHHHh--cCceeeecccccCHHHHHHHHHHhc
Q 011645 394 PFIVVLNKIDLPEARDRLQS-LTEEILK--IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 394 p~ivV~NK~Dl~~~~e~~~~-l~~~l~~--~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+++|+||+|+....+..+. +...... ..+.++|+.+++|+++++++|.+.+
T Consensus 273 p~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 273 PRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999765433322 2222233 3567899999999999999998765
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.4e-76 Score=621.34 Aligned_cols=324 Identities=44% Similarity=0.735 Sum_probs=293.3
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 011645 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (480)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (480)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||++|++++||++|
T Consensus 1 ~f~D~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggp~gG----~GG~GG~v~~~~~~~~~tl~~~ 58 (424)
T PRK12297 1 MFIDQAKIYVKAGDGGDGMVS--------------FRREKY----VPKGGPDGG----DGGKGGSVIFVADEGLRTLLDF 58 (424)
T ss_pred CceEEEEEEEEecCCCCceee--------------EEhhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 599999999999999999997 889987 899999998 9999999999999999999999
Q ss_pred cccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccch
Q 011645 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (480)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~ 233 (480)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||++++|+++|||||+||+||.+|.++
T Consensus 59 ~~~~~~~a~~G~~g~------~~~~~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s 132 (424)
T PRK12297 59 RYKRHFKAENGENGM------GKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATS 132 (424)
T ss_pred cCccEEEcCCCCCCC------CCCCCCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCC
Confidence 999999999999986 378899999999999999999998 6789999999999999999999999999987643
Q ss_pred hhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee
Q 011645 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (480)
Q Consensus 234 ~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~ 313 (480)
. +++|++++.|++||++.|+||||.+++|+|||+||||||||||+|+++++++++|||||+.|+.+.
T Consensus 133 ~-------------~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~ 199 (424)
T PRK12297 133 T-------------NQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV 199 (424)
T ss_pred C-------------CCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE
Confidence 2 246788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCC---CChhhHHHHHHHHHhhCCCC
Q 011645 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDY 390 (480)
Q Consensus 314 v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~---~~~~~~~~l~~eL~~~~~~l 390 (480)
+.+.. ..++++|||||++++++++.++++.|++|+++|+++|||||+++. ++.+++..|.+||..|.+.+
T Consensus 200 v~~~~-------~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L 272 (424)
T PRK12297 200 VETDD-------GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL 272 (424)
T ss_pred EEEeC-------CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc
Confidence 86542 137999999999999999999999999999999999999999864 78889999999999998878
Q ss_pred CCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcCc
Q 011645 391 LERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 391 ~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
..+|++||+||+|+....+.++.+.+.+. ..+.++|+.+++|+++++++|...+..
T Consensus 273 ~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 273 LERPQIVVANKMDLPEAEENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred cCCcEEEEEeCCCCcCCHHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999998655554555555443 456789999999999999999877644
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.7e-76 Score=628.28 Aligned_cols=325 Identities=42% Similarity=0.678 Sum_probs=294.4
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 011645 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (480)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (480)
++|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||++|++++||++
T Consensus 2 ~~fvD~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggpdGG----~GG~GG~v~~~~~~~~~tl~~ 59 (500)
T PRK12296 2 PRFVDRVVLHVKAGDGGNGCAS--------------VHREKF----KPLGGPDGG----NGGRGGSVVLVVDPQVTTLLD 59 (500)
T ss_pred CCcEEEEEEEEEecCCCCccee--------------eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcCchHH
Confidence 4799999999999999999997 788887 789999998 999999999999999999999
Q ss_pred ccccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEccCCceeeccCCCCceEEeecCCCCCCCCCCccch
Q 011645 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (480)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~ 233 (480)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++++|++|+||..++++++||+||+||+||.+|+++
T Consensus 60 ~~~~~~~~a~~G~~G~------~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~ 133 (500)
T PRK12296 60 FHFRPHRKATNGKPGM------GDNRDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASK 133 (500)
T ss_pred hccCceEECCCCCCCC------CCCCCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCc
Confidence 9999999999999986 3789999999999999999999999999999999999999999999999999988754
Q ss_pred hhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee
Q 011645 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (480)
Q Consensus 234 ~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~ 313 (480)
.+ ++|++++.|++||++.|.||||.+++|+|||+||||||||||+|++++++|++|||||+.|+.+.
T Consensus 134 ~~-------------~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv 200 (500)
T PRK12296 134 AR-------------KAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV 200 (500)
T ss_pred cC-------------CCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE
Confidence 32 46888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC----CCChhhHHHHHHHHHhhCC-
Q 011645 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP- 388 (480)
Q Consensus 314 v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----~~~~~~~~~l~~eL~~~~~- 388 (480)
+.... .+|+||||||++++++++++++..|++|+++||++|||||++. .++.+++..+.+||..|.+
T Consensus 201 v~~~~--------~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~ 272 (500)
T PRK12296 201 VQAGD--------TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPA 272 (500)
T ss_pred EEECC--------eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhc
Confidence 87653 2799999999999999999999999999999999999999985 4577888999999998875
Q ss_pred --------CCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc--CceeeecccccCHHHHHHHHHHhcCc
Q 011645 389 --------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 389 --------~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+..+|+|||+||+|++...+..+.+.+.+... .+.++|+.+++|+++++.+|.+.+..
T Consensus 273 l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 273 LDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999987655555555555554 45688999999999999999877644
No 5
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.4e-75 Score=606.12 Aligned_cols=329 Identities=39% Similarity=0.622 Sum_probs=291.8
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 011645 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (480)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (480)
++|+|+++|+|+||+|||||+| |||||| +++|||||| |||+||||||++|++++||++
T Consensus 1 ~~f~D~~~i~~~~G~GG~g~~~--------------f~r~~~----~~~ggp~gg----~GG~Gg~v~~~~~~~~~~l~~ 58 (390)
T PRK12298 1 MKFVDEAKIRVVAGDGGNGCVS--------------FRREKY----IPKGGPDGG----DGGDGGDVYLEADENLNTLID 58 (390)
T ss_pred CCceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhh
Confidence 4699999999999999999997 788887 899999998 999999999999999999999
Q ss_pred ccccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccc
Q 011645 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPE 232 (480)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~ 232 (480)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|++
T Consensus 59 ~~~~~~~~a~~G~~g~------~~~~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~ 132 (390)
T PRK12298 59 YRFERHFRAERGQNGQ------GRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKS 132 (390)
T ss_pred hcCCceEEcCCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhcc
Confidence 9999999999999986 378999999999999999999997 678999999999999999999999999988754
Q ss_pred hhhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce
Q 011645 233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 312 (480)
Q Consensus 233 ~~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g 312 (480)
+ + +++|++++.|++||+++++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+.|
T Consensus 133 ~---------~----~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G 199 (390)
T PRK12298 133 S---------V----NRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG 199 (390)
T ss_pred C---------c----cCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE
Confidence 3 2 24678899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccC---CCCChhhHHHHHHHHHhhCCC
Q 011645 313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPD 389 (480)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s---~~~~~~~~~~l~~eL~~~~~~ 389 (480)
++..... .+++++||||++++++++.+++..|++|+++||+++||+|++ ..++.+++..+.++|..|.+.
T Consensus 200 iv~~~~~-------~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~ 272 (390)
T PRK12298 200 VVRVDDE-------RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK 272 (390)
T ss_pred EEEeCCC-------cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh
Confidence 9876421 259999999999999988899999999999999999999998 456788889999999998877
Q ss_pred CCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc----CceeeecccccCHHHHHHHHHHhcCcccc
Q 011645 390 YLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 390 l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~~sa~t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
+..+|+++|+||+|+....+..+.+.+..... .+..+|++++.++++++++|.+.+.....
T Consensus 273 L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 273 LAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred hcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 77899999999999976544333333332332 45688999999999999999887755433
No 6
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=6.5e-75 Score=593.21 Aligned_cols=321 Identities=43% Similarity=0.718 Sum_probs=288.8
Q ss_pred ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhcc
Q 011645 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (480)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~~ 155 (480)
|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||++|++++||++|+
T Consensus 1 f~D~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~ 58 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVS--------------FRREKY----VPKGGPDGG----DGGRGGSVILEADENLNTLLDFR 58 (329)
T ss_pred CeEEEEEEEEecCCCCceee--------------EEeecc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhcc
Confidence 89999999999999999997 788887 789999998 99999999999999999999999
Q ss_pred ccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEcc-CCceeeccCCCCceEEeecCCCCCCCCCCccchh
Q 011645 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR 234 (480)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~~-~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~~ 234 (480)
++++|+|++|+||. +++++|++|+|++|+||+||+|++. ++++++||++++++++|||||+||+||.+|+++.
T Consensus 59 ~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~ 132 (329)
T TIGR02729 59 YQRHFKAENGENGM------GKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSST 132 (329)
T ss_pred CCcEEEcCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCcc
Confidence 99999999999985 4788999999999999999999985 7899999999999999999999999998876432
Q ss_pred hcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceec
Q 011645 235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL 314 (480)
Q Consensus 235 r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v 314 (480)
+++|+.++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+.+.+
T Consensus 133 -------------~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v 199 (329)
T TIGR02729 133 -------------NRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV 199 (329)
T ss_pred -------------CCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE
Confidence 2467889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCC---CChhhHHHHHHHHHhhCCCCC
Q 011645 315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYL 391 (480)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~ 391 (480)
.++. ..++++|||||++++++++++++..|++|+++|+++|||+|+++. ++++++..|.+||..|.+.+.
T Consensus 200 ~~~~-------~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~ 272 (329)
T TIGR02729 200 RVDD-------GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA 272 (329)
T ss_pred EeCC-------ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc
Confidence 7643 137999999999999999999999999999999999999999976 788899999999999987777
Q ss_pred CCCEEEEEeCCCCcChHHHHHHHHHHHH-h--cCceeeecccccCHHHHHHHHHHhc
Q 011645 392 ERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 392 ~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-~--~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+|+++|+||+|+....+ .+.+.+.+. . ..+.++|+.+++|++++++++.+.+
T Consensus 273 ~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 899999999999986543 333444333 2 3466889999999999999987543
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=5.4e-73 Score=557.58 Aligned_cols=337 Identities=38% Similarity=0.597 Sum_probs=301.4
Q ss_pred ccCCCCCCCCCCCCCCCCCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCC
Q 011645 57 RTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGH 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~ 136 (480)
..++-.+++..++.+....|+|..+|.+++|+||+||+||++. |+ .++|+|||| +||+
T Consensus 22 ~~~~L~~k~~~s~~~~sq~fiD~~rv~~kgG~GG~G~ssf~~~----------~~--------~~~g~PdGG----dGG~ 79 (366)
T KOG1489|consen 22 KLQELFPKKLKSEHKASQNFIDKRRVRIKGGSGGSGASSFFRG----------YR--------RPRGGPDGG----DGGN 79 (366)
T ss_pred hccccccccchhhhhhhhhhheeeeEEeeccCCCCccchhhhh----------cc--------cccCCCCCC----CCCC
Confidence 3344456777788888889999999999999999999987653 22 346899998 9999
Q ss_pred CceEEEEec-CCcchhhhccccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCce
Q 011645 137 GGDVVIYAD-EGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDE 214 (480)
Q Consensus 137 GG~v~~~~~-~~~~~l~~~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~ 214 (480)
||+||++|+ ...++|. +..+.++|++|++++ +.+++|.+|++.+|+||+||+|+| +.+.++++|++++++
T Consensus 80 GG~V~~~a~~~~~~~l~--~~~s~~~a~~Ge~~~------s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~ 151 (366)
T KOG1489|consen 80 GGHVYFVAKPGAFKQLS--HVGSLIQAPNGENGK------SKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDR 151 (366)
T ss_pred CceEEEEeCcccccccc--cCCceEEccCCCcCc------cccccCCCcceEEEecCCccEEeecccchhHHHhccCCcE
Confidence 999999999 6777777 446789999999985 578999999999999999999998 788999999999999
Q ss_pred EEeecCCCCCCCCCCccchhhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhc
Q 011645 215 VLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 215 ~~~a~GG~GG~gn~~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+++||||.||+||.+|.+ | .+..|.+++.|..||++.++||||.+++|+|||+||||||||||+|+.
T Consensus 152 ~i~arGG~GG~gn~~fls-----------~--~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~ 218 (366)
T KOG1489|consen 152 VIAARGGEGGKGNKFFLS-----------N--ENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSR 218 (366)
T ss_pred EEEeecCCCCccceeecc-----------c--cccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhc
Confidence 999999999999987643 2 234678899999999999999999999999999999999999999999
Q ss_pred CCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCC---C
Q 011645 295 AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---N 371 (480)
Q Consensus 295 ~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~---~ 371 (480)
++++|++|+|||+.|++|++.+++. .+++++|+||+|++||+++|++..||+|||||+.++||||++.. .
T Consensus 219 AKpkVa~YaFTTL~P~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~ 291 (366)
T KOG1489|consen 219 AKPKVAHYAFTTLRPHIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRN 291 (366)
T ss_pred cCCcccccceeeeccccceeecccc-------ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCC
Confidence 9999999999999999999988753 35999999999999999999999999999999999999999998 9
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHhcCceeeecccccCHHHHHHHHHH
Q 011645 372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 372 ~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
++++++.|+.||+.|...+..+|.+||+||+|++++++. +.++.+.++...+.+++++++++++++++.|..
T Consensus 292 p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 292 PWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 999999999999999999999999999999999765544 477777777767899999999999999998753
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=3.4e-44 Score=328.60 Aligned_cols=155 Identities=42% Similarity=0.679 Sum_probs=85.4
Q ss_pred ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhcc
Q 011645 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (480)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~~ 155 (480)
|||+++|+|+||+|||||+| |+||+| .++++|||| +||+||||||+||++++||++++
T Consensus 1 FvD~~~i~v~~G~GG~G~~s--------------f~r~~~----~~~ggp~GG----~GG~GG~V~l~~~~~~~sL~~~~ 58 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVS--------------FRREKY----VPKGGPDGG----NGGNGGDVYLVADENVNSLLDLK 58 (156)
T ss_dssp EECEEEEEEE------------------------EEEETT----CCEEEE--------------EEEEE-TT--SSCCCG
T ss_pred CeEEEEEEEEecCCcCCEEe--------------EEeecc----ccCCCCCCC----CCCCCceeEEEecccccchhhcc
Confidence 99999999999999999997 778877 788999998 99999999999999999999999
Q ss_pred ccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccchh
Q 011645 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR 234 (480)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~~ 234 (480)
..++|+|++|++|. +++++|++|+|++|+||+||+|++ +++++|+||++++++++|||||+||+||.+|.+..
T Consensus 59 ~~~~~~A~~G~~G~------~~~~~G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~ 132 (156)
T PF01018_consen 59 NKKHYKAENGENGK------SRNCHGKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSST 132 (156)
T ss_dssp TSSEEE-------B------TTTB-------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BTT
T ss_pred eeeeEEcCCCCCCC------CCcccccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCCC
Confidence 99999999999985 478899999999999999999998 67899999999999999999999999998876432
Q ss_pred hcccccccccccccchHHHHhcCCCCcEEeeehhhee
Q 011645 235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV 271 (480)
Q Consensus 235 r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~ 271 (480)
++.|++++.|++||++.|+||||+
T Consensus 133 -------------~~~P~~~~~G~~Ge~~~l~LELK~ 156 (156)
T PF01018_consen 133 -------------NRAPRFATPGEPGEERKLELELKT 156 (156)
T ss_dssp -------------CSS--EEE------EEEEEEEEE-
T ss_pred -------------CCCCCccCCCCCceEEEEEEEEeC
Confidence 346788999999999999999984
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.3e-23 Score=192.15 Aligned_cols=164 Identities=54% Similarity=0.879 Sum_probs=132.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+|+|.+|||||||+|+|++.+..++.+|++|.++..+.+..... ..+.+|||||+.+.......+...|+
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-------~~~~l~DtpG~~~~~~~~~~~~~~~~ 73 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-------RSFVVADIPGLIEGASEGKGLGHRFL 73 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-------CeEEEEecCcccCcccccCCchHHHH
Confidence 57999999999999999999988877788999999998888764421 27899999999765544456777888
Q ss_pred hhhccCCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh---cCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~sa 428 (480)
+++..||++++|+|+++. ++.+.+..+.+++..+.+.+..+|+++|+||+|+.......+.+...... ..+.++++
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 889999999999999988 78888888888888776555679999999999997654433333333433 34668999
Q ss_pred ccccCHHHHHHHHHH
Q 011645 429 ETELSSEDAVKSLST 443 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~ 443 (480)
+++.|++++++++.+
T Consensus 154 ~~~~gi~~l~~~i~~ 168 (170)
T cd01898 154 LTGEGLDELLRKLAE 168 (170)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999864
No 10
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=9e-22 Score=196.61 Aligned_cols=194 Identities=23% Similarity=0.436 Sum_probs=138.6
Q ss_pred cccccccccccccchHHHHhcCCCCcEEeeehhhe-ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceec
Q 011645 236 KRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILR-VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL 314 (480)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk-~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v 314 (480)
+.++++..+.+++..+.+...++..+.++=.-.+. ..+.|++.|+||||||||+++|+++++.|++|||||...++|++
T Consensus 131 R~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf 210 (346)
T COG1084 131 RQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF 210 (346)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee
Confidence 33444444455555555555555555221111112 45679999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccCCceEEecCCcccccccccC-ccch---hhhhhhccCCEEEEecccCC--CCChhhHHHHHHHHHhhCC
Q 011645 315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGR---NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNP 388 (480)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~-gl~~---~fl~~i~~ad~ll~VvD~s~--~~~~~~~~~l~~eL~~~~~ 388 (480)
..+. .+++++||||+.+...+.. .+.+ ..++|+ .++|+|++|.|. ..+.+....|++++...
T Consensus 211 e~~~--------~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~-- 278 (346)
T COG1084 211 ERGY--------LRIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL-- 278 (346)
T ss_pred ecCC--------ceEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh--
Confidence 7653 3899999999988654332 2333 235665 488999999986 56788888888888863
Q ss_pred CCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCce---eeecccccCHHHHHHHHHHh
Q 011645 389 DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 389 ~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~---~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
...|+++|+||+|.... +.++++...+...+.. .+++..+.+.+.+-..+...
T Consensus 279 --f~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 279 --FKAPIVVVINKIDIADE-EKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred --cCCCeEEEEecccccch-hHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 34899999999999854 4455555555555444 66777888888777766544
No 11
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=192.02 Aligned_cols=162 Identities=37% Similarity=0.583 Sum_probs=130.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+|||+||+|||||||+||+++..+++|||||+.|..|.+.+.+. +++++|+||++++++.++|.+.+++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga--------~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA--------QIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc--------eEEEEcCcccccCcccCCCCcceee
Confidence 67999999999999999999999999999999999999999998753 8999999999999999999999999
Q ss_pred hhhccCCEEEEecccCCCCCh------------------------------------------hhHHHHHHHHHhhC---
Q 011645 353 RHLRRTRLLVHVIDAAAENPV------------------------------------------NDYRTVKEELRMYN--- 387 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~------------------------------------------~~~~~l~~eL~~~~--- 387 (480)
..++.||++++|+|+...... -+...+...|..|.
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 999999999999999753210 01222233333332
Q ss_pred -------------------CCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcC
Q 011645 388 -------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 388 -------------------~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
....=+|.++|+||+|+.. .+.++.+.+.. ....++++.+.+++++.+.|-..+.
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0112379999999999998 44455554443 6778899999999999998877664
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=8.1e-22 Score=205.28 Aligned_cols=178 Identities=25% Similarity=0.287 Sum_probs=142.9
Q ss_pred cccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccc
Q 011645 246 MRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEK 324 (480)
Q Consensus 246 ~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~ 324 (480)
+.+...++...++.|+ .|+.+.+|+++|.||||||||||+|++.+.+| +++|+||+|.....++.++.
T Consensus 197 ~~~~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~----- 265 (454)
T COG0486 197 LIAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI----- 265 (454)
T ss_pred HHHHHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE-----
Confidence 4456777888899999 99999999999999999999999999999877 99999999999998887753
Q ss_pred cCCceEEecCCccccccc--ccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 325 YSSEATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~--~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
.+.++||+|+++... |..|+.++ ...++.||++|||+|++.+.+.++...+. .+. .++|+++|+||+
T Consensus 266 ---pv~l~DTAGiRet~d~VE~iGIeRs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~------~~~~~i~v~NK~ 334 (454)
T COG0486 266 ---PVRLVDTAGIRETDDVVERIGIERA-KKAIEEADLVLFVLDASQPLDKEDLALIE-LLP------KKKPIIVVLNKA 334 (454)
T ss_pred ---EEEEEecCCcccCccHHHHHHHHHH-HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcc------cCCCEEEEEech
Confidence 799999999998654 55677776 57789999999999999875555554432 111 468999999999
Q ss_pred CCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcCc
Q 011645 403 DLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 403 Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
|+...... ..+ +......+..+++++++|++++.+.+.+....
T Consensus 335 DL~~~~~~-~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 335 DLVSKIEL-ESE-KLANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred hccccccc-chh-hccCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 99875431 112 22233457789999999999999998877644
No 13
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=3.4e-21 Score=176.54 Aligned_cols=160 Identities=44% Similarity=0.764 Sum_probs=122.8
Q ss_pred EecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhc
Q 011645 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 356 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~ 356 (480)
|+|.+|||||||+|+|++.+..++++++||.+++.+.+.... ...+.+|||||+.+.....+.+...|++++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 589999999999999999887778999999999888765441 1378999999997665555666667788889
Q ss_pred cCCEEEEecccCCC------CChhhHHHHHHHHHhhCCC-----CCCCCEEEEEeCCCCcChHHHHHHHH-HH--HHhcC
Q 011645 357 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEARDRLQSLT-EE--ILKIG 422 (480)
Q Consensus 357 ~ad~ll~VvD~s~~------~~~~~~~~l~~eL~~~~~~-----l~~kp~ivV~NK~Dl~~~~e~~~~l~-~~--l~~~g 422 (480)
.+|++++|+|+++. .+.++...+..++..+... +..+|+++|+||+|+....+...... .. .....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 99999999999987 4667777777777755432 24699999999999986544332211 11 12234
Q ss_pred ceeeecccccCHHHHHHHHHH
Q 011645 423 CDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
+.+++++++.|++++++++..
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHh
Confidence 678899999999999998753
No 14
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.86 E-value=2.2e-21 Score=197.79 Aligned_cols=173 Identities=36% Similarity=0.564 Sum_probs=131.3
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---------------ccc-cCCceEEecCCccc
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------------AEK-YSSEATLADLPGLI 338 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---------------~~~-~~~~~~l~DTPGli 338 (480)
|+|||.||||||||+|+|++....+++|||||++|+.|......... ... -...+.+|||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999999998899999999999998765421000 000 01258999999999
Q ss_pred ccccccCccchhhhhhhccCCEEEEecccCC-------------CCChhhHHHHHHHHHhhC------------------
Q 011645 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMYN------------------ 387 (480)
Q Consensus 339 e~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~-------------~~~~~~~~~l~~eL~~~~------------------ 387 (480)
++++++++++..|+.+++.||+++||+|++. .+|.++++.+.+||..++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999974 256677777666665520
Q ss_pred -------------------------------C------------------CCCCCCEEEEEeCCCCcChHHHHHHHHHHH
Q 011645 388 -------------------------------P------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 418 (480)
Q Consensus 388 -------------------------------~------------------~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l 418 (480)
+ .+..+|+|+|+||+|+....+..+.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~ 240 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLKY 240 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhhC
Confidence 0 023589999999999876554444333222
Q ss_pred HhcCceeeecccccCHHHHHH-HHHHhcCc
Q 011645 419 LKIGCDKVTSETELSSEDAVK-SLSTEGGE 447 (480)
Q Consensus 419 ~~~g~~~~sa~t~~Gi~~ll~-~Ls~~~~~ 447 (480)
....+..+|+..+.++.++.+ .+.+.+..
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 223456889999999999998 58877744
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=4.9e-22 Score=182.67 Aligned_cols=151 Identities=28% Similarity=0.426 Sum_probs=109.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc--ccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~--~~~gl~~~ 350 (480)
++|+|+|.||+|||||+|+|++.+..+++||++|.+...|.+.+.. ..+.++||||+..-.. +.+.+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--------~~~~lvDlPG~ysl~~~s~ee~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--------QQVELVDLPGIYSLSSKSEEERVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--------EEEEEEE----SSSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--------ceEEEEECCCcccCCCCCcHHHHHHH
Confidence 4799999999999999999999999999999999999999987653 3799999999865322 22334444
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 427 (480)
++. .+..|++++|+|++.. ..++. +..++.. .++|+++|+||+|+..... ..+.+.+.+ ...+.+++
T Consensus 73 ~l~-~~~~D~ii~VvDa~~l--~r~l~-l~~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~s 142 (156)
T PF02421_consen 73 YLL-SEKPDLIIVVVDATNL--ERNLY-LTLQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVS 142 (156)
T ss_dssp HHH-HTSSSEEEEEEEGGGH--HHHHH-HHHHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEB
T ss_pred HHh-hcCCCEEEEECCCCCH--HHHHH-HHHHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEE
Confidence 433 3679999999999863 23333 4444544 3699999999999875422 234444443 35677899
Q ss_pred cccccCHHHHHHHH
Q 011645 428 SETELSSEDAVKSL 441 (480)
Q Consensus 428 a~t~~Gi~~ll~~L 441 (480)
+.+++|++++.+.+
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999998764
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=6.1e-21 Score=198.28 Aligned_cols=155 Identities=27% Similarity=0.327 Sum_probs=127.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc--cccCccch
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR 349 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a--~~~~gl~~ 349 (480)
+.|+|||.||||||||+|+|++.+.++ +++|++|.|+..+.....+ ..|.++||+|+.+.. ...+.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--------~~f~lIDTgGl~~~~~~~l~~~i~~ 75 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--------REFILIDTGGLDDGDEDELQELIRE 75 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--------ceEEEEECCCCCcCCchHHHHHHHH
Confidence 579999999999999999999999877 9999999999998877653 379999999998654 23455667
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCce---ee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~---~~ 426 (480)
+.+..++.||++|||||+...-+.++.. +.+.|.. .++|+++|+||+|-... +.....++.+|+. .+
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~I 145 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEe
Confidence 7888999999999999999877666644 5556663 36999999999998743 3344556777765 66
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.-+.|+.++++++.+.+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ehhhccCHHHHHHHHHhhc
Confidence 9999999999999998776
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=1.3e-20 Score=187.93 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=120.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc-cCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-~~gl~~~f 351 (480)
+|+|+|.||||||||+|+|++.+.. ++++|+||.+...+....+. .+++++||||+.+..+. .+.+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--------~qii~vDTPG~~~~~~~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--------SQIIFIDTPGFHEKKHSLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--------cEEEEEECcCCCCCcchHHHHHHHHH
Confidence 5899999999999999999998875 48899999987766654332 36899999999764221 12233345
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---Cceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa 428 (480)
..+++.+|+++||+|++.....+ ..+.+.+.. .++|+++|+||+|+....+....+....... .+.++|+
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence 67788999999999999765443 445555554 3589999999999975444333333332222 4568999
Q ss_pred ccccCHHHHHHHHHHhcCcccccc
Q 011645 429 ETELSSEDAVKSLSTEGGEADLLS 452 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~~~~~~~ 452 (480)
.++.|++++++.+.+.+.......
T Consensus 147 ~~g~gi~~L~~~l~~~l~~~~~~~ 170 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPEGPFRY 170 (270)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCC
Confidence 999999999999998876655433
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=9.2e-21 Score=187.78 Aligned_cols=172 Identities=26% Similarity=0.324 Sum_probs=134.7
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~f 351 (480)
-|++||.||||||||+|+|.+++.+| ++.|.||+....|.+..+. .+++++||||+.+..+ .++-+.+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--------~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--------AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--------ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 48999999999999999999999987 9999999999999887653 4899999999977533 355566677
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc----Cceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~~s 427 (480)
...+..+|+++||+|+.......+ +.+.+.|+. ...|+++++||+|.......+..+.+.+... .+.+.|
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 788899999999999997543333 445566664 3579999999999987665344444444332 455889
Q ss_pred cccccCHHHHHHHHHHhcCccccccccccccc
Q 011645 428 SETELSSEDAVKSLSTEGGEADLLSSVTSVKD 459 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~~~~~~~~~~~~~d 459 (480)
+..+.+++.+++.+.+.+.+......+....|
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD 185 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITD 185 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCChhhccC
Confidence 99999999999999999988776655543333
No 19
>PTZ00258 GTP-binding protein; Provisional
Probab=99.84 E-value=8.7e-21 Score=197.38 Aligned_cols=162 Identities=28% Similarity=0.467 Sum_probs=123.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC--------ccc-cCCceEEecCCccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG--------AEK-YSSEATLADLPGLIEG 340 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~--------~~~-~~~~~~l~DTPGlie~ 340 (480)
...++|+|||.||||||||+|+|++.++.+++|||||++|+.|.+......- ... ...++.++||||++++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4567899999999999999999999999999999999999999986542100 000 0125899999999999
Q ss_pred ccccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhCCC---------------------
Q 011645 341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPD--------------------- 389 (480)
Q Consensus 341 a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~~~--------------------- 389 (480)
++.+++++..|++++++||+++||||+.. .+|.++++.+..||..++..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~ 178 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKE 178 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhh
Confidence 99989999999999999999999999852 35677777766666433210
Q ss_pred ---------------------------------------CCCCCEEEEEeCC--CC-cChHHHHHHHHHHHHhc---Cce
Q 011645 390 ---------------------------------------YLERPFIVVLNKI--DL-PEARDRLQSLTEEILKI---GCD 424 (480)
Q Consensus 390 ---------------------------------------l~~kp~ivV~NK~--Dl-~~~~e~~~~l~~~l~~~---g~~ 424 (480)
+..+|+++|+|+. |+ ....+.++.+.+..... .+.
T Consensus 179 ~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v 258 (390)
T PTZ00258 179 EKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPII 258 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEE
Confidence 3469999999999 87 34556667777666543 244
Q ss_pred eeecccc
Q 011645 425 KVTSETE 431 (480)
Q Consensus 425 ~~sa~t~ 431 (480)
.++++.+
T Consensus 259 ~~sa~~E 265 (390)
T PTZ00258 259 PYSAEFE 265 (390)
T ss_pred EeeHHHH
Confidence 5555444
No 20
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.5e-21 Score=193.35 Aligned_cols=112 Identities=38% Similarity=0.675 Sum_probs=91.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC----------ccccCCceEEecCCcccccc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------AEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~----------~~~~~~~~~l~DTPGlie~a 341 (480)
..++||||.||||||||+|+||.....+++|||||++|+.|.+......- .......+.++|++|++.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 35799999999999999999999998889999999999999986543100 00001247899999999999
Q ss_pred cccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHH
Q 011645 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 383 (480)
Q Consensus 342 ~~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL 383 (480)
|+++||+.+||.+|+.+|+|++|||++. .+|.++++.+..||
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL 133 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTEL 133 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999985 25566555555444
No 21
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.84 E-value=1.3e-20 Score=197.42 Aligned_cols=176 Identities=37% Similarity=0.556 Sum_probs=130.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---------------cccc-CCceEEecCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------------AEKY-SSEATLADLPG 336 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---------------~~~~-~~~~~l~DTPG 336 (480)
.+|+|||+||||||||+|+|++.+..+++|||||++|+.|.+....... ...+ ...+.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5799999999999999999999998889999999999999865311000 0001 13578999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCC-------------CCChhhHHHHHHHHHhhCC---------------
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMYNP--------------- 388 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~-------------~~~~~~~~~l~~eL~~~~~--------------- 388 (480)
++++++++++++..|+++++.||+++||||++. .++.++++.+..||..++.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999972 3456666665555543210
Q ss_pred ----------------------------------------------------CCCCCCEEEEEeCCCCcChHHHHHHHHH
Q 011645 389 ----------------------------------------------------DYLERPFIVVLNKIDLPEARDRLQSLTE 416 (480)
Q Consensus 389 ----------------------------------------------------~l~~kp~ivV~NK~Dl~~~~e~~~~l~~ 416 (480)
....+|+|+|+||+|+....+.+..+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~ 241 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE 241 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh
Confidence 0135999999999998654433444333
Q ss_pred HHHhcCceeeecccccCHHH-HHHHHHHhcCccc
Q 011645 417 EILKIGCDKVTSETELSSED-AVKSLSTEGGEAD 449 (480)
Q Consensus 417 ~l~~~g~~~~sa~t~~Gi~~-ll~~Ls~~~~~~~ 449 (480)
. ....+..+|+..+.++.+ +.+.+...+....
T Consensus 242 ~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 242 E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 3 223356889999999988 6777776654443
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=2e-20 Score=193.34 Aligned_cols=161 Identities=32% Similarity=0.365 Sum_probs=118.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc-ccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~-a~~~~gl~~ 349 (480)
..++|+|+|+||||||||+|+|++.+..+.+++|||+++....+.... +..+.+|||||++.. .+.-.....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-------~~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-------GGEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-------CceEEEEecCcccccCCHHHHHHHH
Confidence 568999999999999999999999886668999999999888776532 137899999999542 111001112
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeecc
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 429 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~ 429 (480)
..+.++..||++++|+|++++...++...+.+.+.... ..++|+++|+||+|+....+ ...+.. ....+.++|++
T Consensus 261 ~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~-v~~~~~--~~~~~i~iSAk 335 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPR-IERLEE--GYPEAVFVSAK 335 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHh-HHHHHh--CCCCEEEEEcc
Confidence 34566788999999999998877766666666665543 23689999999999975432 221111 11235789999
Q ss_pred cccCHHHHHHHHHH
Q 011645 430 TELSSEDAVKSLST 443 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~ 443 (480)
++.|++++++.+..
T Consensus 336 tg~GI~eL~~~I~~ 349 (351)
T TIGR03156 336 TGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
No 23
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.6e-19 Score=164.94 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=112.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC-ccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~-gl~~~f 351 (480)
++|+++|.+|||||||+|+|++....+.+++++|..+..+.+.... .++.+|||||+.+...+.+ .+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~~~~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--------LRWQVIDTPGLLDRPLEERNTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--------eEEEEEECCCcCCccccCCchHHHHH
Confidence 4699999999999999999999887778889999888877765432 3799999999865322211 111111
Q ss_pred hhhh-ccCCEEEEecccCCCCC--hhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--HhcCceee
Q 011645 352 LRHL-RRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKV 426 (480)
Q Consensus 352 l~~i-~~ad~ll~VvD~s~~~~--~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~~g~~~~ 426 (480)
+..+ ..+|++|+|+|+++... .+....+.+++.... .+.|+++|+||+|+....+..+ ..+.. ....+.++
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 148 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKI 148 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEE
Confidence 1111 23689999999987643 244445666665432 3689999999999976543222 22222 23356789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|++++++++...+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 149 STLTEEGVDEVKNKACELL 167 (168)
T ss_pred EecccCCHHHHHHHHHHHh
Confidence 9999999999999998654
No 24
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=4.5e-20 Score=195.15 Aligned_cols=163 Identities=32% Similarity=0.391 Sum_probs=118.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc-cc-ccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AH-LGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~-a~-~~~gl~ 348 (480)
.++.|+|+|.||||||||+|+|++.+..+++++|||+++....+..... ..+.+|||||++.. ++ .-+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-------~~~~l~DTaG~~r~lp~~lve~f- 267 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-------GETVLADTVGFIRHLPHDLVAAF- 267 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-------CeEEEEecCcccccCCHHHHHHH-
Confidence 4478999999999999999999998888889999999998877765321 26899999998542 11 11112
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC-ceeee
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-CDKVT 427 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g-~~~~s 427 (480)
...+.++..||++|+|+|++++...++...+...|..... .++|+++|+||+|+...... .+........ ...+|
T Consensus 268 ~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~v~IS 343 (426)
T PRK11058 268 KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIRVWLS 343 (426)
T ss_pred HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH--HHHHHhcCCCceEEEe
Confidence 2235667889999999999988776766555555554321 36899999999999753221 1111111222 35689
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|++++++++....
T Consensus 344 AktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 344 AQTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
No 25
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.81 E-value=1.3e-19 Score=186.83 Aligned_cols=115 Identities=37% Similarity=0.676 Sum_probs=93.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC--------Cccc-cCCceEEecCCcccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAEK-YSSEATLADLPGLIEGAHL 343 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~~~-~~~~~~l~DTPGlie~a~~ 343 (480)
.+|+|||+||||||||+|+|++.++.+++|||||++|+.|.+...... .+.. ...++.++||||+++++++
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 579999999999999999999999888999999999999988765310 0000 0125899999999999999
Q ss_pred cCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhC
Q 011645 344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN 387 (480)
Q Consensus 344 ~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~ 387 (480)
+++++..|++++++||+++||||+.. .+|.++++.+..||..++
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d 136 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILAD 136 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999853 256777776666665443
No 26
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=3.8e-19 Score=173.94 Aligned_cols=160 Identities=35% Similarity=0.515 Sum_probs=121.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+|+|+||+|||||+|+|++....+++|+|||+++..|.+.+.. ..+.+|||||+.+.+....++...++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--------~~i~l~DtpG~~~~~~~~~~~~~~~l 72 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--------AKIQLLDLPGIIEGAADGKGRGRQVI 72 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--------eEEEEEECCCcccccccchhHHHHHH
Confidence 4799999999999999999999988889999999999998876543 37899999999887665566667788
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHH--------------------------------------------hhC-
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELR--------------------------------------------MYN- 387 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~--------------------------------------------~~~- 387 (480)
..++.+|++++|+|+++.. ++...+.++|+ .|.
T Consensus 73 ~~~~~ad~il~V~D~t~~~--~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i 150 (233)
T cd01896 73 AVARTADLILMVLDATKPE--GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKI 150 (233)
T ss_pred HhhccCCEEEEEecCCcch--hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCe
Confidence 8899999999999997643 23333333332 221
Q ss_pred ---------------------CCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcC
Q 011645 388 ---------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 388 ---------------------~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
....-.|+++|+||+|+....+ .+.+ .....+.++|++++.|++++++.+...++
T Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~~~---~~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 151 HNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LDLL---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HHHH---hcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0112368999999999976543 2222 22345778899999999999999987653
No 27
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.80 E-value=1.7e-19 Score=180.21 Aligned_cols=113 Identities=39% Similarity=0.683 Sum_probs=91.5
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---cccc------CCceEEecCCcccccccccC
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---AEKY------SSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---~~~~------~~~~~l~DTPGlie~a~~~~ 345 (480)
|+|||+||||||||+|+|++.+..+++|||||++|+.|.+......- ...+ ..++.++||||++++++.++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999999889999999999999987543100 0001 12489999999999999999
Q ss_pred ccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhC
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN 387 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~ 387 (480)
+++..|+.++++||++++|||+.. .+|..+++.+..||..++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d 132 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILAD 132 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999853 256677776666665443
No 28
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=7.8e-19 Score=180.82 Aligned_cols=170 Identities=24% Similarity=0.290 Sum_probs=121.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~ 350 (480)
.+|+++|.||||||||+|+|.+.+..+ ++.+.||.+...+.+..+. .++.+|||||+.+... ....+.+.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--------~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--------TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--------eEEEEEECCCcCCCcccHHHHHHHH
Confidence 489999999999999999999887654 7788999887777765442 3789999999965321 12223333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc----Ccee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDK 425 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~ 425 (480)
...++..||++|||+|++... +.. ..+.+.+.. .+.|.++|+||+|+... ....+.+.+... .+.+
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~--~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSF--DDITHNILDKLRS-----LNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCC--CHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEE
Confidence 445678999999999987532 222 334455553 24688899999998653 234444444433 3568
Q ss_pred eecccccCHHHHHHHHHHhcCccccccccccccc
Q 011645 426 VTSETELSSEDAVKSLSTEGGEADLLSSVTSVKD 459 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~~~~~~~~~~~~~d 459 (480)
+|+.++.|+++++++|...+......+.+....|
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 8999999999999999998877666555443333
No 29
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=8.3e-19 Score=182.44 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=128.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc-
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL- 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl- 347 (480)
....+|++||.||+|||||+|+|++.+..+ ++.|+||+++....++.+. ..+.++||+|+.....-.+++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--------~~~~liDTAGiRrk~ki~e~~E 247 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--------RKYVLIDTAGIRRKGKITESVE 247 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--------eEEEEEECCCCCcccccccceE
Confidence 356899999999999999999999998866 9999999999887776553 479999999998754432222
Q ss_pred ---chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-HHHHHHHH----HHHH
Q 011645 348 ---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLT----EEIL 419 (480)
Q Consensus 348 ---~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-~e~~~~l~----~~l~ 419 (480)
....++.+++||++++|+|++.+...++.+.+-...+ .+++++||+||+|+.+. +..++.++ ..+.
T Consensus 248 ~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 248 KYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred EEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 1235788999999999999999888777765544444 47999999999998764 23333333 3344
Q ss_pred hcC---ceeeecccccCHHHHHHHHHHhcCccccccccc
Q 011645 420 KIG---CDKVTSETELSSEDAVKSLSTEGGEADLLSSVT 455 (480)
Q Consensus 420 ~~g---~~~~sa~t~~Gi~~ll~~Ls~~~~~~~~~~~~~ 455 (480)
.+. +.++|+.++.++.++++.+..............
T Consensus 322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts 360 (444)
T COG1160 322 FLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTS 360 (444)
T ss_pred cccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence 343 447899999999999998876654444333333
No 30
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=2.4e-18 Score=163.45 Aligned_cols=161 Identities=30% Similarity=0.382 Sum_probs=117.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc--Ccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~--~gl 347 (480)
+..++|+|+|.+|||||||+|+|++....+.+++++|+++....+..... ..+.+|||||+.+..... ..+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~~~~~~~~ 111 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-------REVLLTDTVGFIRDLPHQLVEAF 111 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-------ceEEEeCCCccccCCCHHHHHHH
Confidence 45689999999999999999999998766677888998887776654321 278999999986532110 111
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH--hcCcee
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDK 425 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~ 425 (480)
...+.++..+|++++|+|++++....+...+.+.+..+. ..++|+++|+||+|+....... .... ...+.+
T Consensus 112 -~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~~ 184 (204)
T cd01878 112 -RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG--AEDIPMILVLNKIDLLDDEELE----ERLEAGRPDAVF 184 (204)
T ss_pred -HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC--cCCCCEEEEEEccccCChHHHH----HHhhcCCCceEE
Confidence 112344678999999999998777766666666666543 2358999999999997654322 2222 234668
Q ss_pred eecccccCHHHHHHHHHHh
Q 011645 426 VTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+|+.++.|+++++++|...
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 185 ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 9999999999999998654
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=2.2e-18 Score=173.26 Aligned_cols=166 Identities=27% Similarity=0.356 Sum_probs=118.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~f 351 (480)
.|+|+|.||||||||+|+|++.+..+ ++.|.||.+...+.+..+. .+++++||||+.+... .++.+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--------~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--------AQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------ceEEEEECCCCCCchhHHHHHHHHHH
Confidence 49999999999999999999988754 7888898877766654321 3799999999865432 122233344
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh----cCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~----~g~~~~s 427 (480)
...+..+|++++|+|+++... +....+.+.+.. .+.|+++|+||+|+....+......+.+.. ..+.++|
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIG-PGDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCC-hhHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 567789999999999987332 223344444542 358999999999998443333434444433 2356889
Q ss_pred cccccCHHHHHHHHHHhcCccccccc
Q 011645 428 SETELSSEDAVKSLSTEGGEADLLSS 453 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~~~~~~~~ 453 (480)
+.++.|++++++++............
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999988765554433
No 32
>COG2262 HflX GTPases [General function prediction only]
Probab=99.78 E-value=8.7e-19 Score=179.93 Aligned_cols=164 Identities=31% Similarity=0.367 Sum_probs=128.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
..++.|++||++|||||||+|+|+++.....+..|+|++|....+...+ +..+.+.||-|+|.. ....+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~LV~ 260 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPLVE 260 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHHHH
Confidence 4678999999999999999999999998889999999999999887653 247999999999874 2223444
Q ss_pred hh---hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceee
Q 011645 350 NF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 350 ~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~ 426 (480)
+| |..+..+|+++||||+++++..+.++...+.|.... ...+|+|+|+||+|+....+....+.... . ....+
T Consensus 261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~-~~v~i 336 (411)
T COG2262 261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG--ADEIPIILVLNKIDLLEDEEILAELERGS-P-NPVFI 336 (411)
T ss_pred HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC--CCCCCEEEEEecccccCchhhhhhhhhcC-C-CeEEE
Confidence 55 445567999999999999988888887777777643 24589999999999887654233332222 1 35688
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
|+.++.|++.+.+.|...+.
T Consensus 337 SA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EeccCcCHHHHHHHHHHHhh
Confidence 99999999999999887664
No 33
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.77 E-value=3.4e-18 Score=154.83 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=113.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......+.++.+.....+..+.. ...+.+|||||.... .....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~D~~G~~~~-------~~~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK------TVRLQLWDTAGQERF-------RSLIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE------EEEEEEEECCCcHHH-------HHHHH
Confidence 37999999999999999999998877777777776665555443311 125899999996432 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa~ 429 (480)
..+..+|++++|+|++++.+++....+..++..... .+.|+++|+||+|+..... ..+........ ..+.++++.
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence 456889999999999988778887777777765332 2589999999999953221 12222222222 446689999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
++.|++++++++.+.
T Consensus 146 ~~~~v~~l~~~i~~~ 160 (161)
T cd01861 146 AGHNVKELFRKIASA 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=1.1e-18 Score=186.10 Aligned_cols=172 Identities=25% Similarity=0.269 Sum_probs=124.8
Q ss_pred ccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCcccc
Q 011645 247 RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKY 325 (480)
Q Consensus 247 ~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~ 325 (480)
+....++....+.++ .++...+|+++|.||||||||+|+|++.+.. ++++|+||.+.....+..+.
T Consensus 196 ~~~l~~l~~~~~~~~------~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g------- 262 (449)
T PRK05291 196 IAELEALLASARQGE------ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG------- 262 (449)
T ss_pred HHHHHHHHHHHHHHH------HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-------
Confidence 334444445555555 5677889999999999999999999988764 58899999988777765542
Q ss_pred CCceEEecCCcccccccc--cCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 326 SSEATLADLPGLIEGAHL--GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~--~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
..+.+|||||+.+.... ..++. ..+.++..+|++++|+|++++...++...+.. ..++|+++|+||+|
T Consensus 263 -~~i~l~DT~G~~~~~~~ie~~gi~-~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~D 332 (449)
T PRK05291 263 -IPLRLIDTAGIRETDDEVEKIGIE-RSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKAD 332 (449)
T ss_pred -eEEEEEeCCCCCCCccHHHHHHHH-HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhh
Confidence 26899999999653221 11122 23567889999999999998766655443322 24689999999999
Q ss_pred CcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcC
Q 011645 404 LPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 404 l~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+....... ......+.++|++++.|++++++++.+...
T Consensus 333 L~~~~~~~-----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 333 LTGEIDLE-----EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ccccchhh-----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 97643221 112234678999999999999999987763
No 35
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=3.1e-18 Score=156.27 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=103.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc----cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
+|+|+|.+|||||||+++|++..... .....+|.....+.+.++. ..+.+|||||+.+ +..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--------ARLKFWDLGGQES-------LRS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--------EEEEEEECCCChh-------hHH
Confidence 48999999999999999998754321 1122345555555554432 3789999999854 233
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH---------h
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---------K 420 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~---------~ 420 (480)
.+..+++.+|++++|+|+++.........+..++... ....+.|+++|+||+|+..... .+++.+.+. .
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCc
Confidence 4556688999999999998766555555554444331 1234689999999999875421 122222221 1
Q ss_pred cCceeeecccccCHHHHHHHHHH
Q 011645 421 IGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 421 ~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
..+.++|+++++|+++++++|++
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 24668899999999999999864
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.76 E-value=4.8e-18 Score=154.90 Aligned_cols=157 Identities=19% Similarity=0.114 Sum_probs=110.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......|.++.+.....+..+.. ...+.+|||||.... .....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~D~~g~~~~-------~~~~~ 70 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK------TIKAQIWDTAGQERY-------RAITS 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCChHHH-------HHHHH
Confidence 68999999999999999999987765544555444333333322210 125889999997542 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHH--hcCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL--KIGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~--~~g~~~~sa~ 429 (480)
.+++.|+++++|+|+++..+++++..|..++....+ .+.|+++|+||+|+....+ ..++...... ...+.++++.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456789999999999988888888888888776542 3589999999999875321 1122222222 3457799999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
++.|++++++++...
T Consensus 149 ~~~~v~~l~~~l~~~ 163 (165)
T cd01868 149 DGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998755
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=8.6e-18 Score=159.67 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=109.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+........|....+.....+..+.. ..-.+.+|||||... +...+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~-----~~~~l~l~Dt~G~~~-------~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPN-----TVVRLQLWDIAGQER-------FGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCC-----CEEEEEEEECCCchh-------hhhhHH
Confidence 47999999999999999999976433222222222222222322200 012588999999733 223344
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhC--CCCCCCCEEEEEeCCCCcCh----HHHHHHHHHHHHhcCceee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kp~ivV~NK~Dl~~~----~e~~~~l~~~l~~~g~~~~ 426 (480)
.++..+|++++|+|++++.+++....|..++.... ......|+++|+||+|+... .+....+.+......+.++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEE
Confidence 56788999999999999888888888887776532 11246899999999999631 2223333332222356789
Q ss_pred ecccccCHHHHHHHHHHhcCc
Q 011645 427 TSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
|++++.|+++++++|...+..
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999977644
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=4.3e-18 Score=182.60 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=114.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl 347 (480)
..+++|+|||.||||||||+|+|++.... +.+.|++|.+...+.+.... ..+.+|||||+..... ....+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~ 107 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--------RRFTVVDTGGWEPDAKGLQASV 107 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--------cEEEEEeCCCcCCcchhHHHHH
Confidence 44589999999999999999999987654 47899999887776655432 3689999999853211 11122
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCc---e
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---D 424 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~---~ 424 (480)
...+..+++.||++|+|+|+++..+..+ ..+.+.+.. .++|+++|+||+|+....... ..+...++ .
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~----~~~~~~g~~~~~ 177 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADA----AALWSLGLGEPH 177 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhh----HHHHhcCCCCeE
Confidence 3334556789999999999998765544 345556654 369999999999987532211 12223332 4
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++|+.++.|++++++++....
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhc
Confidence 799999999999999998776
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=7.5e-18 Score=177.99 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=117.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~- 348 (480)
...+|+++|.||+|||||+|+|++.+.. +.++++||.++....+.... ..+.+|||||+.+.......+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~e~ 242 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--------KKYLLIDTAGIRRKGKVTEGVEK 242 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--------cEEEEEECCCccccccchhhHHH
Confidence 3468999999999999999999987654 48899999988766665432 3689999999976544322222
Q ss_pred ---hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH----h-
Q 011645 349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K- 420 (480)
Q Consensus 349 ---~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~----~- 420 (480)
...+++++.||++|+|+|++++.+.++...+ ..+.. .++|+++|+||+|+....+..+.+.+.+. .
T Consensus 243 ~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 316 (429)
T TIGR03594 243 YSVLRTLKAIERADVVLLVLDATEGITEQDLRIA-GLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL 316 (429)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC
Confidence 1235678899999999999987776665433 33333 36899999999999833333344443332 2
Q ss_pred --cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 --IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 --~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++||.++.|++++++++....
T Consensus 317 ~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 317 DFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 3466899999999999999887543
No 40
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=7.2e-18 Score=151.16 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=108.1
Q ss_pred EEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchhhhh
Q 011645 276 GLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR 353 (480)
Q Consensus 276 ~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~fl~ 353 (480)
+++|.+|||||||+|+|++... .+++++.+|.+.....+.... ..+.+|||||+.+... ..+.+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--------REFILIDTGGIEPDDEGISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--------eEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 5799999999999999998764 347788888877666554432 3689999999976422 11223334556
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---Cceeeeccc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSET 430 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa~t 430 (480)
.+..+|++++|+|+.......+.. +...+.. ...|+++|+||+|+...... ...+... .+.++++.+
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEeccc
Confidence 778899999999998755444432 3344443 35899999999999875443 2223333 346889999
Q ss_pred ccCHHHHHHHHHHh
Q 011645 431 ELSSEDAVKSLSTE 444 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~ 444 (480)
+.|++++++++.+.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.76 E-value=9.3e-18 Score=152.05 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=106.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...... ..++.|+.+.....+..+. ....+.+|||||..+. .....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDG------QQCMLEILDTAGTEQF-------TAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECC------EEEEEEEEECCCcccc-------chHHH
Confidence 48999999999999999999865432 2333343222222222221 0125788999997442 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....+.+++..+.. ..+.|+++|+||+|+..... ....+.+.+ ...+.++|+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQW-GCPFYETSA 145 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHc-CCeEEEecC
Confidence 456789999999999998888888888888876542 24689999999999865321 122222222 244678999
Q ss_pred ccccCHHHHHHHHHHh
Q 011645 429 ETELSSEDAVKSLSTE 444 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~ 444 (480)
+++.|++++++++...
T Consensus 146 ~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 146 KSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998754
No 42
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.75 E-value=1.2e-17 Score=150.54 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=106.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.... ..+..|+.+.....+..+.. ...+.+|||||..+ +...+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEE-------YSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCE------EEEEEEEECCCCcc-------hHHHHH
Confidence 47999999999999999999976532 23333332221112221110 12477899999743 223334
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc--Cceeeeccc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSET 430 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~t 430 (480)
.++..+|++++|+|.++..+++....+..++..+. .....|+++|+||+|+...........+..... .+.++|+++
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence 56778999999999998777777777777776553 224689999999999975332223333333333 466899999
Q ss_pred ccCHHHHHHHHHHh
Q 011645 431 ELSSEDAVKSLSTE 444 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~ 444 (480)
+.|++++++++.+.
T Consensus 147 ~~gi~~l~~~l~~~ 160 (162)
T cd04138 147 RQGVEEAFYTLVRE 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998754
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=6.8e-18 Score=181.10 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=116.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~- 348 (480)
...+|+|+|.||||||||+|+|++.+. .++++++||.++....+..+. ..+.+|||||+........+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--------~~~~l~DTaG~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--------KTWRFVDTAGLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--------EEEEEEECCCccccccccchHHH
Confidence 457999999999999999999998875 458899999988776665432 3688999999865432211111
Q ss_pred -h--hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHh--
Q 011645 349 -R--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK-- 420 (480)
Q Consensus 349 -~--~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~-- 420 (480)
. ....++++||++++|+|+++..+.++...+ ..+.. .++|+|+|+||+|+..... ...++.+.+..
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence 0 112456899999999999988777776543 33332 3689999999999975322 11223333332
Q ss_pred -cCceeeecccccCHHHHHHHHHHhcC
Q 011645 421 -IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 421 -~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
..+.++|++++.|++++++.+.....
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 24568899999999999999986654
No 44
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.75 E-value=1.2e-17 Score=159.19 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=110.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc-cCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-~~gl~~~f 351 (480)
.+|+|+|.+|||||||++++.+.+......|.++.+.....+..+.. . ..+.+|||||+.+.... ........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~----~--~~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR----V--YDLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE----E--EEEEEEeCCCcccCCccchhHHHHHH
Confidence 37999999999999999999976543333343332222122221110 1 25789999998543110 00011112
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-CCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
..+++.||++|+|+|++++++++....|.+++..+.. .....|+++|+||+|+...+ +..+.+........+.++
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3457889999999999998888888878777765431 12468999999999996532 122222222234567899
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
|++++.|++++|+.+.....
T Consensus 155 Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 155 SAKYNWHILLLFKELLISAT 174 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999987653
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=8.8e-18 Score=153.57 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=106.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|..........+..+.+...-.+..+. ....+.+|||||.... ....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~-------~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG------KRVKLQIWDTAGQERF-------RTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHH
Confidence 36899999999999999999987643221111111222222222111 0126899999997432 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~s 427 (480)
...+..+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+....+ ....+.+......+.+++
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 4456789999999999998878887788888876432 4689999999999975422 222333322223457899
Q ss_pred cccccCHHHHHHHHHHh
Q 011645 428 SETELSSEDAVKSLSTE 444 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~ 444 (480)
+.++.|++++++++...
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998754
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=1.1e-17 Score=153.33 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=107.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......|.++.+...-.+.... ..-.+.+|||||..+. ...+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~g~~~~-------~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND------KRVKLQIWDTAGQERY-------RTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHHH
Confidence 5899999999999999999998765332222211111111111110 0126899999997542 22345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 429 (480)
.++..+|++++|+|+++..+++.+..|..++..+.. ...|+++|+||+|+...... .+...+.... ..+.+++++
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK 146 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence 667889999999999988888888888888876542 35899999999999754211 1222222223 346789999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
++.|+++++++|...+
T Consensus 147 ~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 147 ENINVKQVFERLVDII 162 (165)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 47
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=9.7e-18 Score=150.93 Aligned_cols=151 Identities=26% Similarity=0.365 Sum_probs=107.1
Q ss_pred EecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--cCccchhhhhh
Q 011645 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRH 354 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~~gl~~~fl~~ 354 (480)
|+|.+|||||||+|+|++....+..++++|.+.....+..+. ..+.+|||||+.+.... ...+...++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--------KEIEIVDLPGTYSLSPYSEDEKVARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--------eEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence 589999999999999999876778899999988877776542 26899999998654221 11233344443
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH--hcCceeeeccccc
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSETEL 432 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa~t~~ 432 (480)
..+|++++|+|++.... . ..+..++.. .++|+++|+||+|+............... ...+.++++.++.
T Consensus 73 -~~~d~vi~v~d~~~~~~--~-~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 -EKPDLIVNVVDATNLER--N-LYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred -CCCcEEEEEeeCCcchh--H-HHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCC
Confidence 58999999999986432 2 223344443 35899999999999764322222222222 2356789999999
Q ss_pred CHHHHHHHHHHh
Q 011645 433 SSEDAVKSLSTE 444 (480)
Q Consensus 433 Gi~~ll~~Ls~~ 444 (480)
|+.+++++|...
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=1.7e-17 Score=150.30 Aligned_cols=160 Identities=14% Similarity=0.055 Sum_probs=107.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......|..+.+.....+.... ..-.+.+|||||..+. .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN------KEVRVNFFDLSGHPEY-------LEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------eEEEEEEEECCccHHH-------HHHHH
Confidence 3799999999999999999998764322222222221111222111 0126889999998442 12223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC---CCCCCEEEEEeCCCCcChH-HHHHHHHHHHHh--cCceee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKV 426 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~---l~~kp~ivV~NK~Dl~~~~-e~~~~l~~~l~~--~g~~~~ 426 (480)
.++..+|++|+|+|++++.+++....|..++..+... ....|+++|+||+|+.... ...++....... ..+.++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 4567899999999999988888888888888776532 2468999999999996321 112222222222 446799
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++.|+++++++|...+
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987553
No 49
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=1.5e-17 Score=151.98 Aligned_cols=161 Identities=17% Similarity=0.102 Sum_probs=110.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
+..++|+++|.+|||||||+++|+.........+..+.+.....+...+. ...+.+|||||..+. ..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~D~~g~~~~-------~~ 71 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE------KIKLQIWDTAGQERF-------RS 71 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHHH-------HH
Confidence 45689999999999999999999865443333333333333323322211 125789999997542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh---cCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~ 426 (480)
.+...+..+|++++|+|+++..+++....+..++..+.. ...|+++|+||+|+....+....+.+.+.. ..+.++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~ 149 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLET 149 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 334567789999999999987777777777777776542 358899999999987543322222233322 346799
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.++.|+.+++++++...
T Consensus 150 Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 150 SAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998653
No 50
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.2e-17 Score=157.45 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=110.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce-eccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g-~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+++|.+|||||||++++...+.....++.|+...... .+..+. ..-.+.||||||.... ....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG------VKVKLQIWDTAGQERF-------RSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC------EEEEEEEEeCCCcHHH-------HHhh
Confidence 3799999999999999999998776554444443222111 122111 0126889999997432 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~s 427 (480)
..++..+|++++|+|+++.++++.+..|..++..+.+ ...|+++|+||+|+.... +....+... ....+.+++
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~S 144 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKE-YGVPFMETS 144 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHH-cCCeEEEEe
Confidence 4456789999999999998888888888888877643 368999999999996422 122222222 123567999
Q ss_pred cccccCHHHHHHHHHHhcCc
Q 011645 428 SETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+.++.|+++++++|......
T Consensus 145 a~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877644
No 51
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.74 E-value=1.7e-17 Score=152.29 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=109.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||++++++.+......|.++.+.....+..... ...+.+|||||.... ....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~D~~g~~~~-------~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK------KIKLQIWDTAGQERF-------RTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE------EEEEEEEeCCchHHH-------HHHH
Confidence 468999999999999999999987643322222222211112221110 126899999997442 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa 428 (480)
..+++.||++++|+|++++.+++.+..|..++..+.. .+.|+++|+||+|+.+..+ ..+........ ..+.++|+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 4567889999999999988888888888888876542 4689999999999975321 11222222222 45679999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.|++++++++....
T Consensus 148 ~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 148 KANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998665
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.74 E-value=2e-17 Score=152.17 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=110.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||++++++.+......+.++.+.....+..... ...+.+|||||..+ +....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK------QIKLQIWDTAGQES-------FRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHH-------HHHHH
Confidence 368999999999999999999987654433333233322222222210 12689999999643 23334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa 428 (480)
..+++.+|++++|+|++++.+++++..|..++..+. ....|+++|+||+|+..... ..+........ ..+.++++
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA 148 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 556788999999999998888888888888887653 24689999999999874221 12222222232 45668999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
..++++++++.++.+..
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 53
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.74 E-value=2.3e-17 Score=158.79 Aligned_cols=163 Identities=14% Similarity=0.044 Sum_probs=111.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++........|..+.+.....+..+.. ....+.||||||.... ...+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-----~~~~~~i~Dt~G~~~~-------~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-----LNVTLQVWDIGGQSIG-------GKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCcHHH-------HHHHH
Confidence 37999999999999999999976543333344444443333333211 1126889999997432 12233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC-CCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 428 (480)
.++..||++|+|+|++++++++....|..++..+... ....|+++|+||+|+...... .+...+.... ..+.++|+
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA 148 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA 148 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 4567899999999999988888888888888876432 234579999999999743211 1122222222 34668899
Q ss_pred ccccCHHHHHHHHHHhcCc
Q 011645 429 ETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~~ 447 (480)
++++|++++++++......
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987643
No 54
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=1.1e-17 Score=149.80 Aligned_cols=152 Identities=24% Similarity=0.203 Sum_probs=110.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc-Cccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~-~gl~~~ 350 (480)
.+|+++|.+|||||||+++|++.... +.+++++|.+...+.+.... .++.+|||||+.+....- ......
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~ 73 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--------IPVRLIDTAGIRETEDEIEKIGIER 73 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--------EEEEEEECCCcCCCcchHHHHHHHH
Confidence 47999999999999999999987653 47788888877665554332 378999999987643210 001112
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeeccc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 430 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t 430 (480)
...++.++|++++|+|++.+.+..+...+.. ...+|+++|+||+|+....+. ........+.++++.+
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCC
Confidence 4466789999999999998776666554432 246999999999999865433 1122234567899999
Q ss_pred ccCHHHHHHHHHHh
Q 011645 431 ELSSEDAVKSLSTE 444 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~ 444 (480)
+.|+++++++|...
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=1.8e-17 Score=151.53 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=109.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||++++.+.+......+.++.+.....+.... ....+.+|||||.... ....
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~-------~~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERF-------RTIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHhH-------HHHH
Confidence 36899999999999999999997765443333223222222222111 0126889999997432 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHH--hcCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~--~~g~~~~sa 428 (480)
..+++.+|++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+...... .+....... ...+.++++
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 4556789999999999998888888888888876542 35899999999998653211 122222222 335678999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.|+.++++.+....
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999997654
No 56
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74 E-value=1.5e-17 Score=153.47 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=104.2
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|++... .. +.+|.......+.+.. ..+.+|||||..+ ....+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~--------~~i~l~Dt~G~~~-------~~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKN--------LKFTIWDVGGKHK-------LRPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECC--------EEEEEEECCCChh-------cchHHHH
Confidence 589999999999999999997632 12 2334433333333321 2789999999843 2334556
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH--h------cCcee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~--~------~g~~~ 425 (480)
++..+|++++|+|++++.+++....++.++... ......|+++|+||+|+..... .+++.+.+. . ..+.+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGALS-VEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCCC-HHHHHHHhCCccccCCCcEEEEe
Confidence 778899999999999877666665555555421 1234589999999999964311 222222221 1 13457
Q ss_pred eecccccCHHHHHHHHHHhcCc
Q 011645 426 VTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+|++++.|+++++++|+..+..
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999876644
No 57
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=5.4e-17 Score=146.71 Aligned_cols=150 Identities=22% Similarity=0.185 Sum_probs=100.3
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-|+++|.+|||||||+|+|++..... ...+++|.+.....+.... ...+.+|||||+.+ +...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~-------~~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEK-------FIKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHH-------HHHH
Confidence 58999999999999999999754221 2235667766555544321 13789999999843 2233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHh-----cC
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILK-----IG 422 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~-----~g 422 (480)
....+..+|++++|+|+++....+....+ ..+... ..+|+++|+||+|+.... ...+++.+.+.. ..
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 45567789999999999863222222222 223321 125999999999997642 123444455543 35
Q ss_pred ceeeecccccCHHHHHHHHH
Q 011645 423 CDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls 442 (480)
+.++|+.++.|++++++.+.
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHh
Confidence 66889999999999999875
No 58
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.1e-17 Score=175.13 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=116.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~- 348 (480)
...+|+++|.||||||||+|+|++.... ++++++||.+.....+.... ..+.++||||+....+....+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~lvDT~G~~~~~~~~~~~e~ 243 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--------QKYTLIDTAGIRRKGKVTEGVEK 243 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--------eeEEEEECCCCCCCcchhhHHHH
Confidence 4689999999999999999999987754 48899999987655554332 3689999999976544333222
Q ss_pred ---hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH------
Q 011645 349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL------ 419 (480)
Q Consensus 349 ---~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~------ 419 (480)
...++++++||++|+|+|++.+...++...+ ..+.. .++|+++|+||+|+...+ ..+++.+.+.
T Consensus 244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~-----~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~~ 316 (435)
T PRK00093 244 YSVIRTLKAIERADVVLLVIDATEGITEQDLRIA-GLALE-----AGRALVIVVNKWDLVDEK-TMEEFKKELRRRLPFL 316 (435)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCcEEEEEECccCCCHH-HHHHHHHHHHHhcccc
Confidence 2235678899999999999988776665433 33433 358999999999998532 2333333322
Q ss_pred -hcCceeeecccccCHHHHHHHHHHhc
Q 011645 420 -KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 -~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+.++|+.++.|++++++.+....
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23567899999999999999876543
No 59
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=1.3e-17 Score=177.27 Aligned_cols=158 Identities=26% Similarity=0.352 Sum_probs=113.6
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--c
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--G 344 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~ 344 (480)
.++...+|+++|.||||||||+|+|++... .++++|+||.+...+.+..+. ..+.+|||||+.+.... .
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--------~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--------ILIKLLDTAGIREHADFVER 270 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--------EEEEEeeCCCcccchhHHHH
Confidence 677889999999999999999999998765 458999999988777776543 26899999999754221 1
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCce
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 424 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~ 424 (480)
.++. ....+++.+|++++|+|++++.+.++. +..++.. .++|+++|+||+|+... + .+.+.+.+ ...+.
T Consensus 271 ~gi~-~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~ 339 (442)
T TIGR00450 271 LGIE-KSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSS 339 (442)
T ss_pred HHHH-HHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceE
Confidence 1222 235678899999999999987665554 4444432 35899999999999754 1 12221111 12345
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+|+++ .|++++++.|....
T Consensus 340 ~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 340 NLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EEEEec-CCHHHHHHHHHHHH
Confidence 788887 68888888777655
No 60
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=167.41 Aligned_cols=112 Identities=40% Similarity=0.693 Sum_probs=92.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---------ccccCCceEEecCCcccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------AEKYSSEATLADLPGLIEGAHL 343 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---------~~~~~~~~~l~DTPGlie~a~~ 343 (480)
.++||||.||+|||||+|+|++.....++|||+|++|+.+.+...+..- .......+++.|++|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 3799999999999999999999998899999999999999886542110 0001124889999999999999
Q ss_pred cCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHH
Q 011645 344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELR 384 (480)
Q Consensus 344 ~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~ 384 (480)
++||+..||.||+.+|.|++||++.. .+|..+++.+.+||.
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~ 151 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELR 151 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHH
Confidence 99999999999999999999999875 256666666666654
No 61
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=2.2e-17 Score=149.45 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=97.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|++.......+.. |.......+... ...+.+|||||..+. ...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~-t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVP-TVGFNVESFEKG--------NLSFTAFDMSGQGKY-------RGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecC-ccccceEEEEEC--------CEEEEEEECCCCHhh-------HHHHHH
Confidence 4899999999999999999986432222221 111111112111 126899999998542 223445
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-CCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----h--cCcee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~~~ 425 (480)
++..+|++++|+|+++...+.....+..++..... ...+.|+++|+||+|+..... ..++.+.+. . ..+.+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEE
Confidence 67889999999999987655544444444432210 113689999999999975421 122222221 1 12567
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+|++++.|+++++++|++
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 899999999999999863
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=3.2e-17 Score=148.68 Aligned_cols=158 Identities=19% Similarity=0.123 Sum_probs=106.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++.+... ...++.|+.+.....+..+. ....+.+|||||..+. .....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG------QWAILDILDTAGQEEF-------SAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC------EEEEEEEEECCCCcch-------hHHHH
Confidence 5899999999999999999987543 23444443222111111111 0125889999997542 22334
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa~ 429 (480)
.++..+|++++|+|+++..+++....+..++..... ..+.|+++|+||+|+..... ..+...+.... ..+.++|+.
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCC
Confidence 566789999999999988777777777777765421 23689999999999975321 11222222333 356789999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
++.|++++++++....
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987543
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.73 E-value=3e-17 Score=149.02 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=106.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+.+......+..+.+.....+..+.. ...+.+|||||..+. .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~l~D~~G~~~~-------~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGK------RVKLQIWDTAGQERF-------RSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCE------EEEEEEEECcchHHH-------HHhHH
Confidence 47999999999999999999987654332232222222122222110 126889999998542 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 429 (480)
.++..+|++++|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+. .++....... ..+.++++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 556789999999999998888888878777765432 46899999999999753211 1222222222 456689999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
++.|++++++++...
T Consensus 146 ~~~~i~~~~~~~~~~ 160 (161)
T cd04113 146 TGENVEEAFLKCARS 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 64
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=7.8e-17 Score=146.13 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=108.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc---
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 348 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~--- 348 (480)
.+|+++|.+|+|||||+|+|++.... ..++++||.......+.... ..+.+|||||+.+..+....+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iiDtpG~~~~~~~~~~~e~~~ 74 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--------KKYTLIDTAGIRRKGKVEEGIEKYS 74 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--------eeEEEEECCCCccccchhccHHHHH
Confidence 57999999999999999999987644 36778888766544444332 3689999999876533322221
Q ss_pred -hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HHHHHHHHHHHh------
Q 011645 349 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK------ 420 (480)
Q Consensus 349 -~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~~~~l~~~l~~------ 420 (480)
...+.++..+|++++|+|++++....... +...+.. .+.|+++|+||+|+.... +..+.+.+.+..
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 12345667899999999999876655443 3333332 358999999999997642 223332222221
Q ss_pred -cCceeeecccccCHHHHHHHHHH
Q 011645 421 -IGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 421 -~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
..+.++++.++.|+.++++.+..
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 34668899999999999998753
No 65
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.73 E-value=3.6e-17 Score=149.14 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=106.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++..... +..++.|+.+.....+..... ...+.+|||||.... .....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQ------QCMLEILDTAGTEQF-------TAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCE------EEEEEEEECCCcccc-------hhHHH
Confidence 4799999999999999999985432 234444443222222222110 125779999998432 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|.++..+++....+..++..+. ...+.|+++|+||+|+.... +..+.+.+.+ ...+.++++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence 45678999999999998877777777777776543 23468999999999996432 2222332222 235679999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++.++.+.+
T Consensus 146 ~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 146 KAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999997654
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.3e-17 Score=174.22 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=115.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~f 351 (480)
+|+|+|.||||||||+|+|++.+.+ +.++|++|.+...+.+.... ..+.+|||||+..... ..+.+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--------~~~~liDTpG~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--------REFILIDTGGIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--------eEEEEEECCCCCCcchhHHHHHHHHH
Confidence 4899999999999999999988764 48899999988877765442 3699999999853211 112344455
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~sa 428 (480)
..+++.||++++|+|+..+....+. .+...|+. .++|+++|+||+|+....... ..+..++ +.++|+
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISA 142 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeC
Confidence 6778899999999999876554443 35556664 368999999999987643322 2234454 458899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.|+.++++.+....
T Consensus 143 ~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 143 EHGRGIGDLLDAILELL 159 (429)
T ss_pred CcCCChHHHHHHHHHhc
Confidence 99999999999998766
No 67
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=2.1e-17 Score=155.21 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=105.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+++|.+|||||||+++|++.+... + .+|..+..+.+.... .++.++||||.... ...+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~~~D~~G~~~~-------~~~~ 78 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGN--------IKFTTFDLGGHQQA-------RRLW 78 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 3689999999999999999999865432 2 234555555443322 26899999998532 2345
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH------------
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL------------ 419 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~------------ 419 (480)
..+++.+|+++||+|+++++.++.....+.++... ..+.+.|+++|+||+|+.... ..+++.+.+.
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCcccccccccC
Confidence 56788999999999999876555554444443321 123578999999999986431 1223333331
Q ss_pred --hcCceeeecccccCHHHHHHHHHHh
Q 011645 420 --KIGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 420 --~~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
...+.++++.+++|+++++++|.++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 2235689999999999999999754
No 68
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=5.9e-17 Score=146.93 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=106.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+|+++|.+|||||||+++|++..... .+..+.+.......+... ...+.+|||||.... ...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~D~~g~~~~-------~~~ 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGK--------KVKLAIWDTAGQERF-------RTL 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCE--------EEEEEEEECCCchhh-------hhh
Confidence 379999999999999999999876543 222222222221122111 126899999997432 122
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH--hcCceeeec
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTS 428 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa 428 (480)
....++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.......++..+... ...+.++++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence 23456789999999999988888888888888877643 246899999999999733221222222222 445778999
Q ss_pred ccccCHHHHHHHHHHh
Q 011645 429 ETELSSEDAVKSLSTE 444 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~ 444 (480)
.++.|++++++.+..+
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998654
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=4.1e-17 Score=147.73 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=109.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......+.++.+.....+..+.. ...+.+|||||.... .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK------RVKLQIWDTAGQERF-------RSITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCChHHH-------HHHHH
Confidence 37999999999999999999987654444444343332222222210 126889999997432 12223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
..+..+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+.... +....+.+.. ...+.++++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa 144 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPFFETSA 144 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeEEEEeC
Confidence 446779999999999988888887778888877653 368999999999987532 2233332221 244668899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.|++++++++.+..
T Consensus 145 ~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 145 KTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998664
No 70
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=9.9e-17 Score=146.04 Aligned_cols=155 Identities=22% Similarity=0.200 Sum_probs=105.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
+.|+|+|.+|||||||+|+|+..+......+++|.+.....+..+. .....+.+|||||+.+. ...+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~iiDtpG~~~~-------~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-----LKIPGITFIDTPGHEAF-------TNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-----CCcceEEEEeCCCcHHH-------HHHHH
Confidence 3589999999999999999998776666666777765544444320 00237899999997432 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HH-HHHHHHHHH--------hcC
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DR-LQSLTEEIL--------KIG 422 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~-~~~l~~~l~--------~~g 422 (480)
..+..+|++++|+|+++....+.+..+ ..+.. .++|+++|+||+|+.... +. ...+..... ...
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAI-KLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence 456789999999999976544443333 33443 368999999999987432 11 122221111 124
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++++.+++|+++++++|....
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhh
Confidence 56889999999999999997654
No 71
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=4.4e-17 Score=149.28 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=107.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecc-ceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+|+++|.+|||||||++++...+. ...++.|+-... .-.+.... ..-.+.+|||||.... ...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNG------QKIKLQIWDTAGQERF-------RAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHH
Confidence 36899999999999999999997643 233443321111 11111111 0126899999997432 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~s 427 (480)
+..+++.+|++++|+|++++.+++.+..|.+++..... ...|+++|+||+|+....+. .++..+.... ..+.++|
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECS 145 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence 44567889999999999998888888888877765432 35799999999999754321 1222233333 3466899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|+++++..+....
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 72
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=4.8e-17 Score=144.82 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=107.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+.+......+.++.+.....+.... ....+.+||+||.... .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG------KTVKLQIWDTAGQERF-------RSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC------EEEEEEEEecCChHHH-------HHHHH
Confidence 3799999999999999999998876554344333333222222211 1126889999998442 22345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc-ChHHHHHHHHHHHH--hcCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEIL--KIGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~-~~~e~~~~l~~~l~--~~g~~~~sa~ 429 (480)
..++.+|++++|+|+++++..+....+...+..+.. ...|+++|+||+|+. ......+.+.+... ...+.++++.
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 145 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK 145 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence 566789999999999987777777777777766432 358999999999996 22222233333333 3466789999
Q ss_pred cccCHHHHHHHHH
Q 011645 430 TELSSEDAVKSLS 442 (480)
Q Consensus 430 t~~Gi~~ll~~Ls 442 (480)
++.|++++++++.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999875
No 73
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.73 E-value=7e-17 Score=147.70 Aligned_cols=153 Identities=20% Similarity=0.124 Sum_probs=103.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce--eccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+|+++|.+|||||||++++...+......+ | ..+... .+..+. . .-.+.+|||||.... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~-------~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLS-T-YALTLYKHNAKFEG----K--TILVDFWDTAGQERF-------QTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-c-eeeEEEEEEEEECC----E--EEEEEEEeCCCchhh-------hhh
Confidence 3799999999999999999987653322111 1 111111 111110 0 125789999997432 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeeec
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa 428 (480)
+..++..+|++++|+|++++.++++...|..++..+. ...|+++|+||+|+.... .++..+.... ..+.++|+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~Sa 140 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEEEeC
Confidence 3456788999999999998888888888888887643 358999999999985321 1222222222 34568999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++++.+....
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987544
No 74
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.72 E-value=4.5e-17 Score=156.09 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=108.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCce-eeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfT-Tl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.|+++|..|||||||++++....... .|+.| +.+-....+..+.. .-.+.+|||+|... +...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~------~v~l~iwDtaGqe~-------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCE------EEEEEEEeCCCchh-------hHHHHH
Confidence 58999999999999999998765422 23222 22222222222210 12689999999843 233345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH----HHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~sa 428 (480)
.+++.||++++|+|++++++++....|.+++..+.. .+.|+++|+||+|+....+. .+.+.+......+.++||
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 567899999999999999999999888888876542 46899999999999653322 122222222334679999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++|++|....
T Consensus 146 ktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 146 KDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 75
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=3.3e-17 Score=150.00 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=98.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...... . +. +|+......+.+.. -.+.+|||||+.. +...+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~-~~-pt~g~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-TI-PTIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c-cC-CCCCcceEEEEECC--------EEEEEEECCCCHh-------HHHHHH
Confidence 37999999999999999999754332 2 21 22222222232221 2689999999843 233345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----hc--Ccee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~~~ 425 (480)
.++..||+++||+|+++..+++....++.++... ......|+++|+||+|+..... .+++.+.+. .. .+.+
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQA 140 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEE
Confidence 6678999999999999876666555544444321 1234589999999999964321 122222221 11 2347
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+|++++.|+++++++|+.
T Consensus 141 ~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 141 TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred eeCCCCCCHHHHHHHHhc
Confidence 899999999999999863
No 76
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=151.31 Aligned_cols=157 Identities=23% Similarity=0.230 Sum_probs=103.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc--c--cCcc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--L--GKGL 347 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~--~--~~gl 347 (480)
..+|+++|.+|||||||+|+|++.....+..|++|..+....+ ..+.+|||||+..... . .+.+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW------------GDFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee------------cceEEEeCCccccccccCHHHHHHH
Confidence 3689999999999999999999887777788888887643322 1589999999632110 0 1112
Q ss_pred chh---hh-hhhccCCEEEEecccCCCCC----hh------hHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HHHH
Q 011645 348 GRN---FL-RHLRRTRLLVHVIDAAAENP----VN------DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQ 412 (480)
Q Consensus 348 ~~~---fl-~~i~~ad~ll~VvD~s~~~~----~~------~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~~~ 412 (480)
... ++ +.+..++++++|+|.+.... +. ....+...+.. .++|+++|+||+|+.... +..+
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~ 151 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLD 151 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHH
Confidence 211 22 23456789999999875321 10 11223333332 368999999999997543 2344
Q ss_pred HHHHHHHh--------cCceeeecccccCHHHHHHHHHHhcC
Q 011645 413 SLTEEILK--------IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 413 ~l~~~l~~--------~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++.+.+.. ..+.++|++++ |+++++++|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 44444432 12468999999 99999999987763
No 77
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=9.7e-17 Score=143.87 Aligned_cols=158 Identities=27% Similarity=0.351 Sum_probs=108.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc-cCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-~~gl~~~ 350 (480)
.+|+++|.+|||||||+|+|++.+..+ .+.+.+|.......+... ...+.+|||||+.+.... ...+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~ 75 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--------DAQIIFVDTPGIHKPKKKLGERMVKA 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--------CeEEEEEECCCCCcchHHHHHHHHHH
Confidence 469999999999999999999876543 555666665555444322 126899999998754321 1112333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh----cCceee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKV 426 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~----~g~~~~ 426 (480)
....+..+|++++|+|++.+.. +....+...+..+ +.|+++|+||+|+....+....+.+.+.. ..+..+
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIG-EGDEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI 149 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccC-chHHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence 4556788999999999997632 2223344445432 58999999999998544444444444433 245688
Q ss_pred ecccccCHHHHHHHHHHh
Q 011645 427 TSETELSSEDAVKSLSTE 444 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~ 444 (480)
++.++.+++++++.|.+.
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999998653
No 78
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=4e-17 Score=152.83 Aligned_cols=153 Identities=24% Similarity=0.270 Sum_probs=105.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+++|.+|||||||+++|++.+.. . ..+|..+..+.+..+. ..+.+|||||.... ...+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~~--------~~~~l~D~~G~~~~-------~~~~ 80 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIGN--------IKFKTFDLGGHEQA-------RRLW 80 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 468999999999999999999976542 1 1235555555554432 26889999997432 2334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH------------
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL------------ 419 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~------------ 419 (480)
..++..+|++++|+|+++..+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+.
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCc-CHHHHHHHhCcccccccccccc
Confidence 567788999999999997655554444444443221 23468999999999987431 1223333331
Q ss_pred ------hcCceeeecccccCHHHHHHHHHHh
Q 011645 420 ------KIGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 420 ------~~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
...+.++|+++++|+++++++|++.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 1235688999999999999999753
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.72 E-value=7.3e-17 Score=146.77 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=104.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+..... .++.|+.+...-.+..+. ....+.+|||||..+. .....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~-------~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDG------EVCLLDILDTAGQEEF-------SAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECC------EEEEEEEEECCCcccc-------hHHHH
Confidence 379999999999999999999765322 233333222111111111 0125789999997542 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....+...+..... ....|+++|+||+|+.... +....+.+.+ ...+.++|+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQW-GCPFLETSA 144 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHc-CCEEEEeec
Confidence 456789999999999988777777776666654322 2368999999999987532 2222222222 245679999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 145 ~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 145 KERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997654
No 80
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=7.7e-17 Score=145.20 Aligned_cols=157 Identities=17% Similarity=0.088 Sum_probs=106.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|+|||||+++|.+........+.++.......+.... ....+.+|||||..... ....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~~-------~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG------KRIDLAIWDTAGQERYH-------ALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC------EEEEEEEEECCchHHHH-------HhhH
Confidence 4799999999999999999997765432222222222222222111 01258899999974421 1122
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa~ 429 (480)
..+..+|++++|+|+++.++++....+.+++..+... +.|+++|+||+|+..... ..+.+.+..... .+.++++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAK 145 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 3356799999999999988888888888888876542 689999999999874321 122233333333 35688999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
++.|++++++++...
T Consensus 146 ~~~gi~~~~~~l~~~ 160 (162)
T cd04123 146 TGKGIEELFLSLAKR 160 (162)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
No 81
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=5.6e-17 Score=171.86 Aligned_cols=153 Identities=25% Similarity=0.321 Sum_probs=112.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~ 350 (480)
++|+|+|.||||||||+|+|++.+.+ +.++|++|.+...+.+.... ..+.+|||||+.+... ....+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~~ 73 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--------REFILIDTGGIEPDDDGFEKQIREQ 73 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--------cEEEEEECCCCCCcchhHHHHHHHH
Confidence 57999999999999999999988764 47899999888777765442 3799999999975211 11123344
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~s 427 (480)
+..++..+|++|||+|++.+....+. .+.+.|+. .++|+++|+||+|+....+... .+..++ +.++|
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~----~~~~lg~~~~~~iS 143 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADAY----EFYSLGLGEPYPIS 143 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhHH----HHHhcCCCCCEEEE
Confidence 56678899999999999876544443 34445554 2689999999999765322222 223343 45789
Q ss_pred cccccCHHHHHHHHHH
Q 011645 428 SETELSSEDAVKSLST 443 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~ 443 (480)
+.++.|+.++++.+..
T Consensus 144 a~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 144 AEHGRGIGDLLDAILE 159 (435)
T ss_pred eeCCCCHHHHHHHHHh
Confidence 9999999999999976
No 82
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=4.4e-17 Score=153.44 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=107.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|...... ..++.|+.+.....+..+.. .-.+.+|||||..+. ......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQ------PCMLEVLDTAGQEEY-------TALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCE------EEEEEEEECCCchhh-------HHHHHH
Confidence 5899999999999999999865432 23444432221111211110 125789999997432 222345
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC-CCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeecc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 429 (480)
++..+|++|+|+|+++..+++.+..++.++...... ..+.|+++|+||+|+...... .....+.... ..+.++|++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 677899999999999988888888888888765322 246899999999999643221 1111222222 346789999
Q ss_pred cccCHHHHHHHHHHhcC
Q 011645 430 TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~~ 446 (480)
++.|++++++++.....
T Consensus 147 ~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 147 TNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 83
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=1e-16 Score=147.00 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=106.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|+|||||++++.+.+.....++..+.+.....+..+.. .-.+.+|||||..+. ...+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~D~~G~~~~-------~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH------FVTLQIWDTAGQERF-------RSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCe------EEEEEEEeCCChHHH-------HHhH
Confidence 478999999999999999999876543322222222211112211110 126789999997432 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC--CCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---Cceee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKV 426 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~ 426 (480)
..+++.+|++++|+|+++.++++.+..|..++..+... ....|+++|+||+|+.......+++.+..... .+.++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 45677899999999999988888888787777654321 23589999999999864322223333333333 45689
Q ss_pred ecccccCHHHHHHHHHHh
Q 011645 427 TSETELSSEDAVKSLSTE 444 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~ 444 (480)
++.++.++.++++.+...
T Consensus 152 Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999998743
No 84
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.72 E-value=4.4e-17 Score=151.25 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=101.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|+..+.. .. ..|...+...+..+. ..+.+|||||... +...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HT--SPTIGSNVEEIVYKN--------IRFLMWDIGGQES-------LRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-Cc--CCccccceEEEEECC--------eEEEEEECCCCHH-------HHHHH
Confidence 468999999999999999999865432 11 223333333333321 3689999999843 33445
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----h--cCce
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD 424 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~~ 424 (480)
..+++.||+++||+|+++.+.+......+.++.... .+.+.|+++|+||+|+..... .+++.+.+. . ..+.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGAMT-PAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEE
Confidence 667889999999999998765554443333332221 234689999999999875311 122222221 1 2356
Q ss_pred eeecccccCHHHHHHHHHH
Q 011645 425 KVTSETELSSEDAVKSLST 443 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~ 443 (480)
++|+.+++|+++++++|+.
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 8999999999999999864
No 85
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=5.9e-17 Score=181.79 Aligned_cols=162 Identities=22% Similarity=0.244 Sum_probs=116.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~- 348 (480)
...+|+|+|.||||||||+|+|++.+.. +.++++||.++....+..+. ..+.+|||||+.+......+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--------~~~~liDTaG~~~~~~~~~~~e~ 520 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--------EDWLFIDTAGIKRRQHKLTGAEY 520 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--------CEEEEEECCCcccCcccchhHHH
Confidence 3579999999999999999999998764 48899999988776665442 3688999999865432211111
Q ss_pred ---hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH----Hhc
Q 011645 349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI----LKI 421 (480)
Q Consensus 349 ---~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l----~~~ 421 (480)
.....++++||++++|+|++.....++...+ ..+.. .++|+++|+||+|+..... .+.+.+.+ ...
T Consensus 521 ~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~ 593 (712)
T PRK09518 521 YSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRV 593 (712)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCC
Confidence 1123457899999999999988777776544 33432 3689999999999976422 22232222 222
Q ss_pred ---CceeeecccccCHHHHHHHHHHhcCc
Q 011645 422 ---GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 422 ---g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+.++|+.++.|++++++.+.+....
T Consensus 594 ~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 TWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 23578999999999999998766543
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.71 E-value=1e-16 Score=145.26 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=104.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|+|||||++++++........+..+.+.....+..... .....+.+|||||..+. .....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~-------~~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS----DEDVRLMLWDTAGQEEF-------DAITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC----CCEEEEEEeeCCchHHH-------HHhHH
Confidence 37999999999999999999976543221222222221112221100 00126899999997432 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 429 (480)
.+++.+|++++|+|++++++++.+..|..++.... .+.|+++|+||+|+....+. .++..+.... ..+.+++++
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 146 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK 146 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 56778999999999998887777777777776533 46899999999998653211 1222222232 345689999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
++.|+++++++|+..
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=1.1e-16 Score=145.53 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=106.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC-CCccCCCceee-eccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~-~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
++|+++|.+|||||||+++|.... .....|..|+- +...-.+.... ...-.+.+|||||.... ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~-------~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-----DNTVELFIFDSAGQELY-------SDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-----CCEEEEEEEECCCHHHH-------HHH
Confidence 479999999999999999998642 23344544441 21111121110 01136899999997432 122
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-HHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-~l~~~l~~--~g~~~~s 427 (480)
...+++++|++++|+|+++..+++.+..|.+++..+. ...|+++|+||+|+....+... ........ ..+.+++
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 3456788999999999998877777788888877654 3589999999999965422111 11111122 3456899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++.|++++++.|....
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999987653
No 88
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=4.6e-17 Score=147.92 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=96.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|+|||||+++|+..... ... +|+......+.+. ..++.+|||||..+ +...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~--~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTI--PTIGFNVETVTYK--------NLKFQVWDLGGQTS-------IRPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcC--CccCcCeEEEEEC--------CEEEEEEECCCCHH-------HHHHHHH
Confidence 5899999999999999999765432 111 2333333333322 13689999999854 2334556
Q ss_pred hhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------cCcee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 425 (480)
++..+|++++|+|++++........ +...++.. .+.++|+++|+||+|+..... ..++.+.+.. ..+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFK 139 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEE
Confidence 7889999999999987544333222 22222221 234689999999999975421 1222222211 13678
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+|++++.|+++++++|++
T Consensus 140 ~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 140 TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eeccCCCCHHHHHHHHhc
Confidence 999999999999999863
No 89
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=1.8e-17 Score=143.77 Aligned_cols=113 Identities=34% Similarity=0.555 Sum_probs=86.7
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC--ccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~--gl~~~ 350 (480)
+|+|+|.||||||||+|+|++.+. .+++++++|..+..+.+.+.. ..+.++||||+.+...... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~~~~vDtpG~~~~~~~~~~~~~~~~ 72 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--------KKFILVDTPGINDGESQDNDGKEIRK 72 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--------EEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--------eeEEEEeCCCCcccchhhHHHHHHHH
Confidence 699999999999999999998754 568899999988666554432 3678999999987644322 13345
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
+++.+..+|+++||+|++. ...+....+.++|+ ..+|+++|+||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7888899999999999776 22344556666664 36999999998
No 90
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=5.6e-17 Score=149.91 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=100.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.... .+. .|.......+..+ ...+.+|||||... +...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~l~l~D~~G~~~-------~~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYE--------GYKLNIWDVGGQKT-------LRPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 57999999999999999999976331 111 1111111122221 12689999999743 223345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hcCcee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~ 425 (480)
.+++.+|++++|+|+++..+++....+..++... ....+.|+++|+||+|+.... ..+++.+.+. ...+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEe
Confidence 6678999999999999876666655555544322 123468999999999997532 1223333331 234678
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+|++++.|++++++++.+
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999863
No 91
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=5e-17 Score=149.99 Aligned_cols=151 Identities=23% Similarity=0.265 Sum_probs=101.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
.|+++|.+|||||||+++|++.... .+ ..|.......+.... ..+.+|||||..+ +...+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~--~~-~~t~g~~~~~~~~~~--------~~~~i~D~~G~~~-------~~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK--KV-APTVGFTPTKLRLDK--------YEVCIFDLGGGAN-------FRGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc--cc-cCcccceEEEEEECC--------EEEEEEECCCcHH-------HHHHHHH
Confidence 3799999999999999999976221 11 122222222232221 2689999999743 3344667
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHH-HHHH-----hcCce
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT-EEIL-----KIGCD 424 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~-~~l~-----~~g~~ 424 (480)
+++.||+++||+|+++...++....++..+.... ...++|+++|+||+|+..... ..+.+. +.+. ...+.
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEE
Confidence 8899999999999998777776666666665432 234789999999999976432 111111 1111 12345
Q ss_pred eeecccc------cCHHHHHHHHHH
Q 011645 425 KVTSETE------LSSEDAVKSLST 443 (480)
Q Consensus 425 ~~sa~t~------~Gi~~ll~~Ls~ 443 (480)
++++.++ .|+.+.|+||.+
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 7899998 899999999964
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.71 E-value=1.5e-16 Score=144.42 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=105.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
++|+++|.+|||||||+++|++.+... .+..+.+.......+... ...+.+|||||.... ...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~--------~~~~~i~D~~G~~~~-------~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDT--------TVKFEIWDTAGQERY-------RSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------EEEEEEEeCCchHHH-------HHH
Confidence 589999999999999999999876433 222222111111112111 126889999997432 112
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HHHHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~~~~l~~~l~~--~g~~~~s 427 (480)
...++..+|++++|+|+++..+++....+..++..... ...|+++|+||+|+.... ...+........ ..+.+++
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence 23356779999999999988777777777777765432 468999999999987321 112222232333 4467899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|+.+++++|.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999997653
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=5.9e-17 Score=149.93 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=98.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|+..... ...| |.......+... ...+.+|||||... +...+.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~--------~~~~~l~Dt~G~~~-------~~~~~~ 71 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYK--------NVKFNVWDVGGQDK-------IRPLWR 71 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 58999999999999999999865431 1122 221122222221 12689999999843 223344
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH-----Hhc--Ccee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKI--GCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l-----~~~--g~~~ 425 (480)
.++..||++|||+|++++.+++....++.++... ....+.|+++|+||+|+.... ..+++.+.+ ... .+.+
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEEE
Confidence 5678999999999999876665554444333321 112468999999999986431 122233322 111 3458
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+||+++.|+++++++|+.
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 899999999999999863
No 94
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.70 E-value=1.2e-16 Score=146.36 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=102.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++++.+.... +..|+-......+.... . ...+.+|||||.... .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~-------~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK----N--ICTLQITDTTGSHQF-------PAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC----E--EEEEEEEECCCCCcc-------hHHHH
Confidence 4799999999999999999997654221 11111111111111110 0 126889999998543 12223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-CCCCCCEEEEEeCCCCcChHHHH-HHHHHHH--HhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDRL-QSLTEEI--LKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kp~ivV~NK~Dl~~~~e~~-~~l~~~l--~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....+++.+..+.. ...+.|+++|+||+|+....+.. +...... ....+.++|+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 456789999999999998888888888777765432 12468999999999996532211 1111111 2345679999
Q ss_pred ccccCHHHHHHHHHH
Q 011645 429 ETELSSEDAVKSLST 443 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~ 443 (480)
+++.|+++++++|..
T Consensus 148 ~~g~~v~~~f~~l~~ 162 (165)
T cd04140 148 KTNHNVQELFQELLN 162 (165)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999863
No 95
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=1.3e-16 Score=147.61 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=107.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC----CccccCCceEEecCCcccccccccCcc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
..+|+++|.+|||||||++++.+.+..-...+..+.+.....+...... ......-.+.+|||||..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 4689999999999999999998765422212211111111111111000 00001126889999997432
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCc
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGC 423 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~ 423 (480)
......+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.... +....+.+.+ ...+
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~ 154 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKY-GIPY 154 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHc-CCeE
Confidence 22234557789999999999998888888888888876432 2357899999999986532 2223333222 2346
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|+++++++|....
T Consensus 155 ~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 155 FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999997544
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.70 E-value=1.4e-16 Score=145.64 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=103.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+........+..+.+.....+.... ....+.+|||||.... ...+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~-------~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD------KLVTLQIWDTAGQERF-------QSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC------EEEEEEEEeCCChHHH-------HhHHH
Confidence 3799999999999999999998754321111111111111121111 0125789999997432 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC--CCCCCCEEEEEeCCCCcCh----HHHHHHHHHHHHhcCceee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kp~ivV~NK~Dl~~~----~e~~~~l~~~l~~~g~~~~ 426 (480)
..++.||++|+|+|+++..+++....|.+++..... .....|+++|+||+|+... .+..+.+.+......+.++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 567889999999999987766666666665543221 1236899999999999732 1222233222222457789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.++.|++++++++....
T Consensus 148 Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 148 SAKEAINVEQAFETIARKA 166 (172)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999988655
No 97
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=1.3e-16 Score=145.08 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=104.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...+... .+..|+.+.....+..+.. ...+.+|||||.... ...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSS------PSVLEILDTAGTEQF-------ASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCE------EEEEEEEECCCcccc-------cchHH
Confidence 479999999999999999998764432 2222221111112221110 125789999997432 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..++++...+..++..... ..+.|+++|+||+|+..... ....+.+.+ ...+.++++
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSA 145 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecC
Confidence 456789999999999998888888878777776432 24689999999999864321 122222221 234568899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+.+++.++..++
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 146 KSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999997543
No 98
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.70 E-value=2.5e-16 Score=145.41 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=100.3
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC---------------CCceeeeccceeccCCCCCCccccCCceEEecCCccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 338 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGli 338 (480)
.|+++|.+|+|||||+++|++....+.. ..++|..+....+.+... .. -...+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~--~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DG--QEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CC--CcEEEEEEECCCCh
Confidence 5899999999999999999875432211 112333332222211000 00 11268899999985
Q ss_pred ccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHH
Q 011645 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTE 416 (480)
Q Consensus 339 e~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~ 416 (480)
+. ...+.+++..+|++|+|+|+++....++...+..... .++|+++|+||+|+.... +..+++.+
T Consensus 79 ~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 145 (179)
T cd01890 79 DF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSADPERVKQQIED 145 (179)
T ss_pred hh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCCHHHHHHHHHH
Confidence 42 3345567788999999999998655555554433222 358999999999986432 22233333
Q ss_pred HHHhc--CceeeecccccCHHHHHHHHHHhc
Q 011645 417 EILKI--GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 417 ~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.-. .+.++|+.+++|+++++++|....
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 32211 256899999999999999997654
No 99
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.6e-17 Score=173.13 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=129.5
Q ss_pred cchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccC
Q 011645 248 DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYS 326 (480)
Q Consensus 248 ~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~ 326 (480)
+.........+..| +++..++|+|+|.||||||||||+|++.+..| ++.|+||.|.....++..+
T Consensus 250 d~v~s~l~~~~~~e------~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-------- 315 (531)
T KOG1191|consen 250 DDVLSHLNKADEIE------RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-------- 315 (531)
T ss_pred HHHHHHHHhhhhHH------HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--------
Confidence 34445566667777 88999999999999999999999999998876 9999999999888877654
Q ss_pred CceEEecCCcccc-cc--cccCccchhhhhhhccCCEEEEecccCCCCChhhHH--HHHHHHHh----hCCCCCCCCEEE
Q 011645 327 SEATLADLPGLIE-GA--HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR--TVKEELRM----YNPDYLERPFIV 397 (480)
Q Consensus 327 ~~~~l~DTPGlie-~a--~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~--~l~~eL~~----~~~~l~~kp~iv 397 (480)
.++.+.||+|+.+ .. .+..|+.++ .+.++++|++++|+|+......++.. ..++.... +......+|+++
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA-~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~ 394 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERA-RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIIL 394 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHH-HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEE
Confidence 3899999999998 21 234456665 46689999999999995544444433 22222221 112234589999
Q ss_pred EEeCCCCcChHHHHHH-HHHHHH-----hcCce-eeecccccCHHHHHHHHHHhc
Q 011645 398 VLNKIDLPEARDRLQS-LTEEIL-----KIGCD-KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 398 V~NK~Dl~~~~e~~~~-l~~~l~-----~~g~~-~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+||+|+...-..+.. .....+ .+.+. ++++.+++|++.+.+.+....
T Consensus 395 ~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 395 VANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred EechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 9999999865211111 111122 22333 478899999999999887665
No 100
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.70 E-value=1.8e-16 Score=150.61 Aligned_cols=160 Identities=13% Similarity=0.058 Sum_probs=108.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||++++.+........|..+.+...-.+.... ....+.||||||... +...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~-------~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING------ERVKLQIWDTAGQER-------FRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC------EEEEEEEEeCCCchh-------HHHHH
Confidence 47899999999999999999987653221112111111111221111 012578999999743 22334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 428 (480)
..++..++++++|+|++++.+++.+..|.+++..+. ...|+++|+||+|+...... .+...+.... ..+.++++
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 149 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSA 149 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 556778999999999999888888888888877644 35899999999999753221 1222222222 44678999
Q ss_pred ccccCHHHHHHHHHHhcCc
Q 011645 429 ETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.++.|+++++++|......
T Consensus 150 ~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 150 KENINVEEMFNCITELVLR 168 (199)
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999877643
No 101
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=1.7e-16 Score=150.52 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=109.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCce-eeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfT-Tl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+++|..+||||||+.++...... .+|+.| +.+-..-.+..+.. .-.+.+|||||.... ..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~------~~~l~iwDt~G~~~~-------~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGR------RVKLQLWDTSGQGRF-------CT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCE------EEEEEEEeCCCcHHH-------HH
Confidence 3478999999999999999999975432 222211 11111111221110 126889999998542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----HHHHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----~e~~~~l~~~l~~~g~~~ 425 (480)
.+..++..+|++|+|+|++++.+++.++.|.+++..+. ...|+++|+||+|+... .+..+.+.+.. ...+.+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~~e 146 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTFFE 146 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEEEE
Confidence 34456689999999999999999999999999998764 36899999999999642 22233333221 245679
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+||+++.|++++|+++....
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 147 VSPLCNFNITESFTELARIV 166 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998655
No 102
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.6e-16 Score=148.63 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=122.3
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCcee--eeccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT--l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
+...++||.|+|..|||||-|+.++........- .+| ++.....+.++.. ..+++||||+|+ +
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~--~sTIGVDf~~rt~e~~gk------~iKlQIWDTAGQ-------E 69 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESY--ISTIGVDFKIRTVELDGK------TIKLQIWDTAGQ-------E 69 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhh--cceeeeEEEEEEeeecce------EEEEEeeecccc-------H
Confidence 4567899999999999999999999876432211 123 2333344444322 137899999998 3
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH----HHHHHHHHHhc
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKI 421 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~----~~~l~~~l~~~ 421 (480)
.+...+..+++.|+.||+|+|+++..+++.+..|.+|++.|.. .+.|.++|.||+|+.+.... .+.+...+.-.
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence 4556678889999999999999999999999999999999875 45799999999999875432 22332222222
Q ss_pred CceeeecccccCHHHHHHHHHHhcCc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+.++|++...+++++|..|+..+..
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHH
Confidence 26689999999999999999877643
No 103
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=1.2e-16 Score=144.57 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=100.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
||+++|.+|||||||++++++.+.. .+ ..|.......+.+.. ..+.+|||||.... ...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~~--------~~~~i~D~~G~~~~-------~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYKN--------VSFTVWDVGGQDKI-------RPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEECC--------EEEEEEECCCChhh-------HHHHHH
Confidence 5899999999999999999987632 11 122222222232221 26899999998542 223455
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hcCceee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 426 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~~ 426 (480)
.+..+|++++|+|++.++.......++..+.... .....|+++|+||+|+..... .+++.+.+. ...+.++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGALS-VSELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCccccC-HHHHHHhhChhhccCCcEEEEEe
Confidence 6678999999999998766665555544443322 135789999999999976431 222222221 2246689
Q ss_pred ecccccCHHHHHHHHHH
Q 011645 427 TSETELSSEDAVKSLST 443 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~ 443 (480)
+++++.|+++++++|..
T Consensus 141 Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 141 SAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eCCCCCCHHHHHHHHhh
Confidence 99999999999999863
No 104
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.70 E-value=2.2e-16 Score=144.63 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=106.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++..........|....+.....+.... ..-.+.+|||||.... .....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~-------~~~~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG------IKVRIQIWDTAGQERY-------QTITK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEeCCCcHhH-------HhhHH
Confidence 3799999999999999999987654322222111111112222211 0125789999997432 22233
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....|.+++..+.+ ...|+++|+||+|+.... +....+.+. ....+.++++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 144 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKE-YGMDFFETSA 144 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 456789999999999998888888888888876542 358999999999986532 222233322 2245779999
Q ss_pred ccccCHHHHHHHHHH
Q 011645 429 ETELSSEDAVKSLST 443 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~ 443 (480)
+++.++++++.+|..
T Consensus 145 ~~~~~v~~~f~~l~~ 159 (161)
T cd04117 145 CTNSNIKESFTRLTE 159 (161)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999874
No 105
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.70 E-value=1.2e-16 Score=146.14 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=105.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||++++..... ...|+.|+.......+..+.. .-.+.+|||||.... .......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~D~~g~~~~------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGE------QVSLEILDTAGQQQA------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCE------EEEEEEEECCCCccc------ccchHHH
Confidence 589999999999999999986432 234554442221112211110 125789999998531 1112345
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeecc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 429 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~ 429 (480)
.+..+|++++|+|+++..+++....|..++..+.....+.|+++|+||+|+.... +....+.+.+ ...+.++++.
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEEEEeCCC
Confidence 6778999999999999888888888877777654322468999999999986431 2222232222 2455688999
Q ss_pred cc-cCHHHHHHHHHHhc
Q 011645 430 TE-LSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~-~Gi~~ll~~Ls~~~ 445 (480)
++ .+++++|+.+....
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 98 59999999997654
No 106
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.69 E-value=2.5e-16 Score=147.89 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=106.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecc-ceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+|+|.+|||||||+++|++.+.....|..|+-... ...+..+.. .-.+.+|||||.... ....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~D~~G~~~~-------~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER------VVTLGIWDTAGSERY-------EAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE------EEEEEEEECCCchhh-------hhhh
Confidence 37999999999999999999987654444443332111 111221110 125779999997432 1112
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---H--HHHHHHHHHh--cCce
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---R--LQSLTEEILK--IGCD 424 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~--~~~l~~~l~~--~g~~ 424 (480)
..++..+|++++|+|+++..+++....|.+++.... .+.|+++|+||+|+....+ . .+++.+.... ..+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 234568999999999998877777777777777643 3689999999999864321 0 1122222233 3456
Q ss_pred eeecccccCHHHHHHHHHHhcC
Q 011645 425 KVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++++.++.|++++++++.....
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987663
No 107
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.69 E-value=2.3e-16 Score=147.10 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+++|.+|||||||++++..... ...|..|+.+.....+..+. .. -.+.+|||||..+. .....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~-------~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGG----EP--YTLGLFDTAGQEDY-------DRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECC----EE--EEEEEEECCCccch-------hhhhh
Confidence 5899999999999999999997653 23333333222111222111 01 26889999998542 11122
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH----------------HHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ----------------SLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~----------------~l~ 415 (480)
.++..+|++++|+|++++++++... .|..++..+. ...|+++|+||+|+....+..+ .+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 3567899999999999988888875 4777777654 3589999999999865422111 121
Q ss_pred HHHHhcCceeeecccccCHHHHHHHHHH
Q 011645 416 EEILKIGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.......+.++|++++.|++++|+.+..
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222235679999999999999998864
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=1.6e-16 Score=149.18 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=100.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++++..... .+. .|...+...+.... ..+.+|||||... +...+.
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~-pt~g~~~~~~~~~~--------~~~~i~D~~Gq~~-------~~~~~~ 79 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLWR 79 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--ccc-CCcceeEEEEEECC--------EEEEEEECCCCHH-------HHHHHH
Confidence 58999999999999999999854321 111 22222222222221 2689999999743 233455
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc-------Ccee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~~ 425 (480)
.+++.+|++|+|+|+++.++++.....+..+.. ...+.+.|+++|+||+|+....+ .+++.+.+.-. .+.+
T Consensus 80 ~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~ 157 (181)
T PLN00223 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQS 157 (181)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEEe
Confidence 668899999999999987655544333222211 11234689999999999976432 33444433211 2346
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++++|+++++++|.+.+
T Consensus 158 ~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 158 TCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 89999999999999998665
No 109
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=1.9e-16 Score=152.71 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=112.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++........+....+.....+..+.. ...+.||||||... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~------~~~l~l~Dt~G~~~-------~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK------TVKAQIWDTAGQER-------YRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE------EEEEEEEECCCcHH-------HHHH
Confidence 4569999999999999999999987654433333323322233322210 12688999999743 2333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
+..+++.++++|+|+|+++..+++.+..|+..+..+.. .+.|+++|+||+|+.... +....+... ....+.++
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~ 154 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-EGLSFLET 154 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHH-cCCEEEEE
Confidence 44567889999999999998888888888888876542 368999999999986432 222222221 23557799
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.++.+++++++++...+
T Consensus 155 SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 155 SALEATNVEKAFQTILLEI 173 (216)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998665
No 110
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.69 E-value=2e-16 Score=142.22 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=109.2
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|++.. ....+..|+.+.....+.... ....+.+||+||..+. ......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG------ETYTLDILDTAGQEEF-------SAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC------EEEEEEEEECCChHHH-------HHHHHH
Confidence 58999999999999999999765 445555565544333332221 0126889999997542 222345
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HHHHHHHHHHHh--cCceeeeccc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVTSET 430 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~~~~l~~~l~~--~g~~~~sa~t 430 (480)
.+..+|++++|+|.++.+++++...++..+...... ...|+++|+||+|+.... ...+........ ..+.++++.+
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence 577899999999999887777777777777654321 368999999999997632 122233333333 3577999999
Q ss_pred ccCHHHHHHHHHHh
Q 011645 431 ELSSEDAVKSLSTE 444 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~ 444 (480)
+.|+++++++|...
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998643
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=1.4e-16 Score=149.33 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=102.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...... ..+|.++.....-.+.... ...-.+.+|||||... +...+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~-------~~~~~~ 70 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGN-----SKGITFHFWDVGGQEK-------LRPLWK 70 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccC-----CCceEEEEEECCCcHh-------HHHHHH
Confidence 57999999999999999999875432 2233221111111111100 0012689999999743 223344
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHH--HHh---cCcee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE--ILK---IGCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~--l~~---~g~~~ 425 (480)
..+..||+++||+|+++..+.+....+..++..+.. ..++|+++|+||+|+.... +..+.+... +.. ..+.+
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQP 149 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEE
Confidence 557789999999999987666666666666654432 2468999999999987431 222222211 111 12458
Q ss_pred eecccccCHHHHHHHHHHhcC
Q 011645 426 VTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+|+.+++|+++++++|.....
T Consensus 150 ~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 150 ACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred eecccCCCHHHHHHHHHHHHH
Confidence 899999999999999987764
No 112
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=1.9e-16 Score=147.39 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=100.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+++|.+|||||||++++...+. ....| |.......+... ...+.+|||||... ....+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~--t~~~~~~~~~~~--------~~~l~l~D~~G~~~-------~~~~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VTTIP--TIGFNVETVTYK--------NISFTVWDVGGQDK-------IRPLW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcCC--ccccceEEEEEC--------CEEEEEEECCCChh-------hHHHH
Confidence 36899999999999999999964432 11112 222211122221 12689999999744 22334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----hc--Cce
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCD 424 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~~ 424 (480)
..+++.||++|||+|++++++++....++.++... ......|+++|+||+|+..... .+++.+.+. .. .+.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEE
Confidence 55678999999999999876666655554444321 1224589999999999975321 122222221 11 234
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++++.|+.+++++|.+.+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999997654
No 113
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=3e-16 Score=141.82 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=104.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|+..... ..+..|+.+.....+..+. ....+.+|||||..+. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~-------~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDG------EDVQLNILDTAGQEDY-------AAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECC------EEEEEEEEECCChhhh-------hHHHH
Confidence 37999999999999999999965432 2344443322211111111 0126899999998543 12223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-HHHHHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-~e~~~~l~~~l~~--~g~~~~sa~ 429 (480)
..++.+|.+++|+|.+++.+++....+...+..... ..+.|+++|+||+|+... ............. ..+.++++.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence 355678999999999987766666666666654322 246999999999999762 1112222222222 356789999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
+++|++++++++....
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997654
No 114
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=2.6e-16 Score=147.54 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=107.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++........+..+.+.....+..+.. .-.+.+|||||.... ...+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~g~~~~-------~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK------IIKLQIWDTNGQERF-------RSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHHH-------HhhHH
Confidence 47999999999999999999977543222222222221112221110 125789999997432 22345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
..++.+|++++|+|++++++++.+..|+.++..+.. ...|+++|+||+|+.... +....+.+. ....+.++++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa 144 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-LNIPFFETSA 144 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHH-cCCeEEEEeC
Confidence 567889999999999998888888888888887643 247999999999987432 112222221 1234678999
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++.++++++++|.....
T Consensus 145 ~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 145 KQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987753
No 115
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=3e-16 Score=150.29 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=105.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
.-.+|+|+|.+|||||||+++|++..... .+..+.+... ..+..+.. ...+.||||||..+. ..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~------~~~l~l~Dt~G~~~~-------~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKI--KQLTVGGK------RLKLTIWDTAGQERF-------RT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEE--EEEEECCE------EEEEEEEECCCchhh-------HH
Confidence 34689999999999999999999765422 2111111111 11211110 126899999997543 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~ 425 (480)
....+++.+|++|+|+|+++.++++.+.. |..++..+.. ....|+++|+||+|+...... .+........ ..+.+
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e 156 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLE 156 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEE
Confidence 23456778999999999998877777754 4445554432 235789999999998643221 1122222223 34568
Q ss_pred eecccccCHHHHHHHHHHhcCc
Q 011645 426 VTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
++++++.|+++++++|......
T Consensus 157 ~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 157 CSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999977744
No 116
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=2.9e-16 Score=144.73 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=107.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++++.........+..+.+.....+..+. ....+.+|||||..+... ..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~------~~~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG------ERIKVQLWDTAGQERFRK------SMV 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC------eEEEEEEEeCCChHHHHH------hhH
Confidence 36899999999999999999987553222222111122112222111 012689999999743210 112
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~s 427 (480)
...+..+|++++|+|++++.+++....|.+++..+... ...|+++|+||+|+....+ ....+.+. ....+.+++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~S 147 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADA-HSMPLFETS 147 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcCCCHHHHHHHHHH-cCCcEEEEe
Confidence 34467899999999999988888888888888865422 4689999999999865432 22223222 235677899
Q ss_pred ccc---ccCHHHHHHHHHHhc
Q 011645 428 SET---ELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t---~~Gi~~ll~~Ls~~~ 445 (480)
+++ ..+++++|..|....
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 998 899999999987654
No 117
>PTZ00369 Ras-like protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=149.10 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=106.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+++|.+|||||||++++...... ..+..|+-......+..+.. ...+.+|||||..+. ...+.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~l~~ 71 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEE------TCLLDILDTAGQEEY-------SAMRD 71 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCE------EEEEEEEeCCCCccc-------hhhHH
Confidence 68999999999999999999976432 12222221111111111110 125789999998543 22334
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++.++++....+..++..+.. ..+.|+++|+||+|+..... ....+.+.+ ...+.++++
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~-~~~~~e~Sa 149 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF-GIPFLETSA 149 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHh-CCEEEEeeC
Confidence 566789999999999998888888888888776532 23689999999999864321 122222221 234679999
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++.|+++++++|.....
T Consensus 150 k~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 150 KQRVNVDEAFYELVREIR 167 (189)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987763
No 118
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=3.5e-16 Score=146.01 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=104.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|.+.... ..+..|+.......+..... ..-.+.+|||||..+. ......
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~-----~~~~l~i~Dt~G~~~~-------~~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNG-----KIIELALWDTAGQEEY-------DRLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCC-----cEEEEEEEECCCchhH-------HHHHHH
Confidence 7999999999999999999976543 23333332222222222100 0126889999997442 112233
Q ss_pred hhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-----HHHHHHHHHHhc---Cce
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI---GCD 424 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-----~~~~l~~~l~~~---g~~ 424 (480)
+++.||++++|+|+++..+++... .|..++..+. .+.|+++|+||+|+..... ..++..+..... .+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 567899999999999888777764 3556665543 3689999999999865320 112222222333 457
Q ss_pred eeecccccCHHHHHHHHHHhcC
Q 011645 425 KVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++++++.+++++++.+.....
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999987763
No 119
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=2.9e-16 Score=146.53 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=101.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC--CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc----
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 344 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~---- 344 (480)
..++|+++|.+|||||||+|+|++.. ..+++.+++|.+.....++ ..+.+|||||+.......
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence 45689999999999999999999875 3457788888776544331 268999999985432110
Q ss_pred --CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHH
Q 011645 345 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEIL 419 (480)
Q Consensus 345 --~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~ 419 (480)
..+...+++....++++++|+|++.+....+.. +...+.. .++|+++|+||+|+.... ...+++++.+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~ 159 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALK 159 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence 111223444445678999999998765544443 3344543 368999999999997543 23455556666
Q ss_pred hc----CceeeecccccCH
Q 011645 420 KI----GCDKVTSETELSS 434 (480)
Q Consensus 420 ~~----g~~~~sa~t~~Gi 434 (480)
.. .+.++|+.+++|+
T Consensus 160 ~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 160 KDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hccCCCceEEEECCCCCCC
Confidence 54 4678899999886
No 120
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=4e-16 Score=150.11 Aligned_cols=160 Identities=19% Similarity=0.131 Sum_probs=109.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.+|||||||+++|++.+......|.++.+.....+.... .....+.+|||||.... .....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~-----~~~~~l~i~Dt~G~~~~-------~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP-----GVRIKLQLWDTAGQERF-------RSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC-----CCEEEEEEEeCCcchhH-------HHHHH
Confidence 6899999999999999999998764333223222222222222111 01126889999997432 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++|+|+|++++.+++.+..|..++..+.. ....|+++|+||+|+.... +....+.+.+. ..+.++++
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeC
Confidence 567789999999999998888888888887765432 1346789999999987532 22333333322 55779999
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++.|+++++++|.....
T Consensus 149 k~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 149 RTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 121
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=3.7e-16 Score=144.08 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=104.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++....... .+. .|.......+.... ......+.+|||||..+. ..+. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~----~~~~---~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KYV-ATLGVEVHPLDFHT----NRGKIRFNVWDTAGQEKF----GGLR---D 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CceeeEEEEEEEEE----CCEEEEEEEEECCCChhh----cccc---H
Confidence 479999999999999999998554221 111 12211111111100 000126889999998542 1122 2
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--HhcCceeeeccc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTSET 430 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~~g~~~~sa~t 430 (480)
.++..+|++|+|+|+++..+++.+..+..++..+.. +.|+++|+||+|+...... ....+.. ....+.++|+++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYYEISAKS 143 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEEEEeCCC
Confidence 345679999999999998888888888888887653 7999999999999743211 1111222 223567999999
Q ss_pred ccCHHHHHHHHHHhc
Q 011645 431 ELSSEDAVKSLSTEG 445 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~ 445 (480)
+.|+++++++|....
T Consensus 144 ~~~v~~~f~~l~~~~ 158 (166)
T cd00877 144 NYNFEKPFLWLARKL 158 (166)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999998665
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=2.2e-16 Score=143.00 Aligned_cols=150 Identities=26% Similarity=0.282 Sum_probs=98.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|++.... ...| |.......+.... ...+.+|||||... +...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~-------~~~l~i~D~~G~~~-------~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEK-------HLSLTVWDVGGQEK-------MRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCC-------ceEEEEEECCCCHh-------HHHHHHH
Confidence 5899999999999999999977542 1122 2111112222111 12689999999743 3334556
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--Hh------cCcee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LK------IGCDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~------~g~~~ 425 (480)
++..+|++++|+|+++..+......+..++... ....+.|+++|+||+|+..... .+++...+ .. ..+.+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEe
Confidence 788999999999999876555555444444322 1234689999999999964311 12222221 11 12557
Q ss_pred eecccccCHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLS 442 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls 442 (480)
+|+++++|+++++++|.
T Consensus 142 ~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 142 CSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cccccCCChHHHHHHHh
Confidence 89999999999999985
No 123
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=2.2e-16 Score=177.27 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=114.9
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGK 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~ 345 (480)
.-...++|+|+|.||||||||+|+|++.+..+ .++|++|.+...+...... ..+.+|||||+..... ...
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~ 342 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--------TDFKLVDTGGWEADVEGIDS 342 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--------EEEEEEeCCCcCCCCccHHH
Confidence 44567889999999999999999999887644 8899999887766554332 3689999999864211 112
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--- 422 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--- 422 (480)
.+......+++.||++|||+|++......+ ..+.+.|+. .++|+++|+||+|+....... ..+..++
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~----~~~~~lg~~~ 412 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDA----AEFWKLGLGE 412 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhH----HHHHHcCCCC
Confidence 233344566789999999999987543333 345566654 469999999999987542221 2222232
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..++|+.++.|+.++++++....
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhc
Confidence 34789999999999999998766
No 124
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=2.5e-16 Score=145.70 Aligned_cols=159 Identities=18% Similarity=0.084 Sum_probs=104.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeec-cceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p-~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
|..++|+++|.+|||||||++++.+....+..|..|+... ....+..+.. ...+.+|||+|..+. .
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~------~~~l~~~d~~g~~~~-------~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ------EKYLILREVGEDEVA-------I 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe------EEEEEEEecCCcccc-------c
Confidence 4578999999999999999999998765434455444221 1112222211 125789999997542 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCce
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD 424 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~ 424 (480)
..+..+++.||++++|+|++++.+++....|..++.. ..+.|+++|+||+|+....+ ..+++.+.+....+.
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL 144 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence 2234456899999999999887655555445444321 23689999999999965432 122332222111246
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++|+.++.|++++++.+.+..
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred EEEeccCccHHHHHHHHHHHh
Confidence 889999999999999998654
No 125
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=3.2e-16 Score=144.01 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=105.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+++|.||||||||++++.+... ...+..|+.......+..+. ....+.+|||||..+. .....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDG------RQCDLEILDTAGTEQF-------TAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC------EEEEEEEEeCCCcccc-------hhhhH
Confidence 4799999999999999999986643 22333333221111222111 1126789999997543 22223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
..+..++.+++|+|.+++.+++....+.+++.... ...+.|+++|+||+|+..... ....+.+.+....+.++++
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 34567999999999998888888777777776432 224689999999999865321 1222222222245779999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.+++++++++....
T Consensus 147 ~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 147 RKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=2.5e-16 Score=140.43 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=98.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+|+|.+|||||||+++|++.+......| |.......+.... ..+.+|||||..+. ...+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~--------~~~~~~D~~g~~~~-------~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN--------VTLKVWDLGGQPRF-------RSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC--------EEEEEEECCCCHhH-------HHHHHH
Confidence 489999999999999999998755433333 2222222222111 26899999997432 233456
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hcCceee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 426 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~~ 426 (480)
++..+|++++|+|++..........++.++... .....+|+++|+||+|+..... ...+.+.+. ...+.++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSI 141 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEE
Confidence 678899999999998765444443333333321 1234689999999999875432 122222211 1235688
Q ss_pred ecccccCHHHHHHHHHH
Q 011645 427 TSETELSSEDAVKSLST 443 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~ 443 (480)
++.++.|++++++++.+
T Consensus 142 Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 142 SCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeccCCChHHHHHHHhh
Confidence 99999999999999863
No 127
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.4e-16 Score=172.52 Aligned_cols=156 Identities=26% Similarity=0.355 Sum_probs=118.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccc--cccccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE--GAHLGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie--~a~~~~gl~~~f 351 (480)
+|+++|.||+|||||+|+||+.+..+++||++|.+-..|.+.... .++.++|+||.-+ ..++++.+.+.|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--------~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--------HEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--------ceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 599999999999999999999999999999999999999987653 3799999999864 344566677776
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeeecc
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~ 429 (480)
+.. ++.|+++.|+|+++.+ ..+....+.++ .++|+++++|++|..+.+-..-...+.-+. .++.++++.
T Consensus 77 ll~-~~~D~ivnVvDAtnLe--RnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 77 LLE-GKPDLIVNVVDATNLE--RNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred Hhc-CCCCEEEEEcccchHH--HHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEee
Confidence 653 5689999999999753 33333333333 479999999999987653222222222223 455688999
Q ss_pred cccCHHHHHHHHHHhcC
Q 011645 430 TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~~ 446 (480)
++.|++++++.+.....
T Consensus 148 ~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 148 RGEGLEELKRAIIELAE 164 (653)
T ss_pred cCCCHHHHHHHHHHhcc
Confidence 99999999999876543
No 128
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=1e-15 Score=143.55 Aligned_cols=158 Identities=21% Similarity=0.219 Sum_probs=109.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC--CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc-----
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----- 343 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~----- 343 (480)
..++|+++|.+|||||||+|+|++.+ ..+++.+++|.......+. .++.+|||||+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN-----------DKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC-----------CeEEEeCCCCCCCcCCCchHHH
Confidence 56789999999999999999999864 3557778888766543321 37999999997532110
Q ss_pred -cCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHH
Q 011645 344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL 419 (480)
Q Consensus 344 -~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~ 419 (480)
...+...++++.+.++++++|+|++.+....+. .+...+.. .+.|+++|+||+|+....+ ..+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 011223445555667899999998875443332 23344443 3589999999999976432 2233444454
Q ss_pred h--cCceeeecccccCHHHHHHHHHHhc
Q 011645 420 K--IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~--~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. ..+.++++.+++|++++++.|.+.+
T Consensus 166 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 166 FGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred hcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3 4567899999999999999987655
No 129
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.68 E-value=1.1e-16 Score=165.15 Aligned_cols=116 Identities=36% Similarity=0.611 Sum_probs=97.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCC--------cc-ccCCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLG--------AE-KYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~--------~~-~~~~~~~l~DTPGlie~a~ 342 (480)
.++||||+||+|||||+|+||+..+ .+++|||||++|+.|++...+..- .. .....+.++|+||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999999 889999999999999987643100 00 0012588999999999999
Q ss_pred ccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhCC
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP 388 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~~ 388 (480)
+++|++..|+.|++.||++++|||+.. .+|.+++..+.+||..++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~ 138 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADE 138 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999864 2577888888888877653
No 130
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=7e-16 Score=141.63 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=103.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+++|...+.. ..++.++ ........... . .-++.+|||||..+. ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~-------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVL-PEITIPADVTP----E--RVPTTIVDTSSRPQD-------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcc-cceEeeeeecC----C--eEEEEEEeCCCchhh-------hHHHhh
Confidence 7999999999999999999876532 2233221 11111111110 0 126889999997432 123455
Q ss_pred hhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH------HHHHHHHHHHhc-Ccee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD------RLQSLTEEILKI-GCDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e------~~~~l~~~l~~~-g~~~ 425 (480)
.+..+|++++|+|++++.+++... .|..+++.+. ...|+++|+||+|+.+..+ ....+.+.+... .+.+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE 143 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence 578899999999999887777754 4666666543 2689999999999976432 122222333332 5779
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|+.++.|++++++.+.+..
T Consensus 144 ~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 144 CSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred eccccccCHHHHHHHHHHHh
Confidence 99999999999999887544
No 131
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.67 E-value=4.9e-16 Score=144.30 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=105.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...+... .+..|+-......+..+. ....+.+|||||..+. ...+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDPTIEDAYKQQARIDN------EPALLDILDTAGQAEF-------TAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCCcccceEEEEEEECC------EEEEEEEEeCCCchhh-------HHHhH
Confidence 479999999999999999998765321 222222111111111111 0125889999998542 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....|...+..... ..+.|+++|+||+|+.... +....+.+.. ...+.++|+
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sa 146 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETSA 146 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEec
Confidence 456789999999999999988888877777765421 2368999999999986432 2222222222 345668999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.|++++|++|....
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 147 ALRHYIDDAFHGLVREI 163 (172)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998665
No 132
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=8.7e-16 Score=142.39 Aligned_cols=158 Identities=15% Similarity=0.062 Sum_probs=104.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+++|.+|||||||++++...... ..|..|. .+.....+..... ...+.+|||||..+. ....
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~ 66 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGV------PFSLQLWDTAGQERF-------KCIA 66 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCE------EEEEEEEeCCChHHH-------HhhH
Confidence 37999999999999999999986542 2232221 2222222222111 126899999998542 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH--HH-HHHHHHHh--cCceee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR--LQ-SLTEEILK--IGCDKV 426 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~--~~-~l~~~l~~--~g~~~~ 426 (480)
..++..+|++++|+|+++..+++....|..++..... ....|+++|+||+|+....+. .+ ........ ..+.++
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 4557789999999999987778877778877654321 124679999999998643221 11 11222222 245689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++.|++++++.|.+..
T Consensus 146 Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 146 SALSGENVREFFFRVAALT 164 (170)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987665
No 133
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=5.9e-16 Score=146.84 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=107.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||++++...+.. ..|..|+.......+..... ...+.+|||||..+. ......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~D~~G~~~~-------~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGV------SLTLDILDTSGSYSF-------PAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCE------EEEEEEEECCCchhh-------hHHHHH
Confidence 5899999999999999999876532 23443432222222222110 126889999997543 111224
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-HH-HHHHHHHHHH---hcCceeeec
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RD-RLQSLTEEIL---KIGCDKVTS 428 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-~e-~~~~l~~~l~---~~g~~~~sa 428 (480)
++..||++++|+|+++..+++....+..++..+... .+.|+++|+||+|+... .. ..+...+... ...+.++++
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 567899999999999888888888787777765432 46899999999998653 11 1111112221 235678999
Q ss_pred ccccCHHHHHHHHHHhcCc
Q 011645 429 ETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.++.|++++++++......
T Consensus 146 ~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 146 KDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999877643
No 134
>PLN03108 Rab family protein; Provisional
Probab=99.67 E-value=6.9e-16 Score=148.17 Aligned_cols=161 Identities=15% Similarity=0.045 Sum_probs=108.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.+......+....+.....+..... .-.+.+|||||.... ...
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~------~i~l~l~Dt~G~~~~-------~~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK------PIKLQIWDTAGQESF-------RSI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHH
Confidence 3478999999999999999999976544332232222222222322210 125789999997532 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~s 427 (480)
...++..+|++|+|+|+++..+++....|..++..+.. ...|+++|+||+|+..... ..++..+.... ..+.+++
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 34566789999999999998888877777777665432 3689999999999975321 11222222233 3466889
Q ss_pred cccccCHHHHHHHHHHhcC
Q 011645 428 SETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~ 446 (480)
++++.+++++|+++.....
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987763
No 135
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.67 E-value=6.2e-16 Score=152.65 Aligned_cols=158 Identities=10% Similarity=0.088 Sum_probs=108.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||++++.+.+.. ..|..|+-+.....+.... .. -.+.||||+|.... ......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~----~~--~~l~I~Dt~G~~~~-------~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRG----EV--YQLDILDTSGNHPF-------PAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECC----EE--EEEEEEECCCChhh-------hHHHHH
Confidence 7999999999999999999865432 2344343222222222221 01 26789999997442 111223
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhC-------CCCCCCCEEEEEeCCCCcCh-HHHHHHHHHHHHh---cC
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-------PDYLERPFIVVLNKIDLPEA-RDRLQSLTEEILK---IG 422 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~-------~~l~~kp~ivV~NK~Dl~~~-~e~~~~l~~~l~~---~g 422 (480)
++..+|++|+|+|+++.++++.+..|.+++..+. ....+.|+|+|+||+|+... ....+++.+.+.. ..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 4568999999999999888888888888886542 12346899999999999742 1223334333332 34
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++|++++.|+++++++|....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998754
No 136
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=7.7e-16 Score=149.02 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=106.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+|+++|.+|||||||++++...+... .+..+.+.... .+.... . .-.+.+|||||.... ...
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~--~~~~~~----~--~~~l~i~Dt~G~~~~-------~~~ 78 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNC----G--KIRFYCWDTAGQEKF-------GGL 78 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEE--EEEECC----e--EEEEEEEECCCchhh-------hhh
Confidence 689999999999999999987654322 11111121111 111110 0 126899999998542 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--HhcCceeeec
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTS 428 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~~g~~~~sa 428 (480)
+..++..+|++|+|+|+++..+++....|..++..+. .+.|+++|+||+|+.......+.+ ... ....+.++|+
T Consensus 79 ~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SA 154 (219)
T PLN03071 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (219)
T ss_pred hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCC
Confidence 2345678999999999999988888888888887654 368999999999986432111122 222 2345678999
Q ss_pred ccccCHHHHHHHHHHhcCc
Q 011645 429 ETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+++.|++++|++|......
T Consensus 155 k~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 9999999999999987754
No 137
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=6.1e-16 Score=145.68 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=103.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.+|||||||++++....... .|..|........+..+. ....+.+|||||..+. ..+. .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~~----~~l~---~ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDG------LHIELSLWDTAGQEEF----DRLR---S 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECC------EEEEEEEEECCCChhc----cccc---c
Confidence 379999999999999999998765422 122221111111111111 0126899999998542 1122 2
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-------------HHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 418 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-------------~~l~~~l 418 (480)
.++..+|++++|+|+++.++++... .|..++..+. .+.|+++|+||+|+....+.. ++..+..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 3467899999999999988887765 4666776543 368999999999997643211 1111222
Q ss_pred Hh---cCceeeecccccCHHHHHHHHHHhcC
Q 011645 419 LK---IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 419 ~~---~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.. ..+.++|++++.|++++|+++.....
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 22 34679999999999999999987764
No 138
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.67 E-value=7e-16 Score=149.81 Aligned_cols=154 Identities=18% Similarity=0.078 Sum_probs=104.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...+... .+ +|........... . ..+.||||||.... .....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~--~Tig~~~~~~~~~------~--~~l~iwDt~G~e~~-------~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TV--STVGGAFYLKQWG------P--YNISIWDTAGREQF-------HGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CC--CccceEEEEEEee------E--EEEEEEeCCCcccc-------hhhHH
Confidence 379999999999999999999775421 11 2222211111111 1 26899999998432 22223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-----------------------HH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----------------------RD 409 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-----------------------~e 409 (480)
.++..+|++|+|+|++++.+++.+..++..+.... ....|+|+|+||+|+... .+
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccccccccccccccccccccCCHH
Confidence 45678999999999999888888877666665432 235899999999998651 12
Q ss_pred HHHHHHHHHHh-------------cCceeeecccccCHHHHHHHHHHhcC
Q 011645 410 RLQSLTEEILK-------------IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 410 ~~~~l~~~l~~-------------~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
....+.+.... ..+.++||+++.|++++|..+.....
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22233322221 23679999999999999999986653
No 139
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=6.5e-16 Score=173.86 Aligned_cols=156 Identities=24% Similarity=0.363 Sum_probs=111.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc--Cccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~--~gl~~~ 350 (480)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+.... .++.++||||+.+-.... ..+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--------~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--------HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--------eEEEEEECCCccccccccccccHHHH
Confidence 4799999999999999999999988899999999999888876542 379999999987532211 112222
Q ss_pred hhh-h--hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCce
Q 011645 351 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD 424 (480)
Q Consensus 351 fl~-~--i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~ 424 (480)
..+ + .+.+|++++|+|+++.+. .. .+..++.. .++|+++|+||+|+.+... ..+.+.+.+ ...+.
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~ler--~l-~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L-G~pVv 146 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNLER--NL-YLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARL-GCPVI 146 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcchh--hH-HHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-CCCEE
Confidence 111 1 257999999999987432 22 24445544 3689999999999874432 223333222 23456
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.+++|++++.+.+....
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 889999999999999887653
No 140
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=4.8e-16 Score=142.82 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=98.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+++|.+|||||||+++|++..... + ..|...+...+... +..+.+|||||... +...+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--~-~~t~g~~~~~i~~~--------~~~~~~~D~~G~~~-------~~~~~ 75 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH--I-TPTQGFNIKTVQSD--------GFKLNVWDIGGQRA-------IRPYW 75 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc--c-CCCCCcceEEEEEC--------CEEEEEEECCCCHH-------HHHHH
Confidence 4679999999999999999999864321 1 11111111123222 13689999999743 23345
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc-------Cce
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 424 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~ 424 (480)
..+++.+|++++|+|+++...+.....+...+.... .....|+++|+||+|+....+ .+.+.+.+... .+.
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEE
Confidence 566788999999999997554444443333332211 124689999999999875422 23333333211 245
Q ss_pred eeecccccCHHHHHHHHHH
Q 011645 425 KVTSETELSSEDAVKSLST 443 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~ 443 (480)
++|+.+++|+++++++|.+
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 7899999999999999863
No 141
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=4.4e-16 Score=146.13 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=99.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+++|.+|||||||++++...... . +. +|...+...+.... ..+.+|||||... +...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~-~~-~T~~~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-T-TI-PTIGFNVETVEYKN--------LKFTMWDVGGQDK-------LRPLW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cC-CccccceEEEEECC--------EEEEEEECCCCHh-------HHHHH
Confidence 368999999999999999999754321 1 21 12222222333221 2689999999843 23334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-----c--Cce
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--GCD 424 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-----~--g~~ 424 (480)
..+++.+|++|||+|+++..+++.....+.++.. ...+...|+++|+||+|+..... .+++.+.+.. . .+.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEE
Confidence 5567899999999999987655555443333321 11234689999999999875321 1222222211 1 233
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++++++++|+++++++|.+..
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999998654
No 142
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=1.2e-15 Score=143.87 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=103.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC-------CCccCCCceeeeccceeccCCCCCC------ccccCCceEEecCCcccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE 339 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~-------~~ia~~pfTTl~p~~g~v~~~~~~~------~~~~~~~~~l~DTPGlie 339 (480)
.+|+++|.+|+|||||+++|+... ......+++|.+.....+....... ...-...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 1123345677666554443320000 000123789999999842
Q ss_pred cccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHH
Q 011645 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTE 416 (480)
Q Consensus 340 ~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~ 416 (480)
+...+.+.+..+|++++|+|++.....+..+.+. .... .+.|+++|+||+|+....+ ..+++.+
T Consensus 81 -------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 81 -------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 3344556667789999999998754444433332 2222 2579999999999974322 2333333
Q ss_pred HHH---------hcCceeeecccccCHHHHHHHHHHhc
Q 011645 417 EIL---------KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 417 ~l~---------~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+. ...+.++|+.++.|++++++.|....
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 321 23456899999999999999987554
No 143
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=7.4e-16 Score=141.67 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=101.7
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhh
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~ 354 (480)
|+++|.+|||||||++++....... .|..|+.......+..+.. .-.+.+|||||..+.. ......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~-------~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-DYVPTVFENYSADVEVDGK------PVELGLWDTAGQEDYD-------RLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-CCCCcEEeeeeEEEEECCE------EEEEEEEECCCCcccc-------hhchhh
Confidence 5799999999999999999765432 2222222221112221110 1258999999985431 112234
Q ss_pred hccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-------------HHHHHHHHh
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEILK 420 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-------------~~l~~~l~~ 420 (480)
+..+|++|+|+|+++..+++.+. .|..++..+. ...|+++|+||+|+....... ++..+....
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 67899999999999887777764 4667776654 368999999999997532211 111122233
Q ss_pred c---CceeeecccccCHHHHHHHHHHhc
Q 011645 421 I---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 ~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. .+.++|++++.|++++++.+....
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 3 456899999999999999987654
No 144
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=1.3e-15 Score=134.47 Aligned_cols=154 Identities=29% Similarity=0.332 Sum_probs=109.0
Q ss_pred EecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhh
Q 011645 277 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 355 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i 355 (480)
++|.+|+|||||+++|++.... +..++.+|.......+.... ...+.+|||||+.+...........+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence 5899999999999999987765 57788888777665554321 137999999999876544333233455667
Q ss_pred ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHH------HHHHHhcCceeeecc
Q 011645 356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL------TEEILKIGCDKVTSE 429 (480)
Q Consensus 356 ~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l------~~~l~~~g~~~~sa~ 429 (480)
..+|++++|+|++......... +...... ...|+++|+||+|+....+..... ........+.++++.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 8899999999999876555443 2333332 468999999999998754332221 111123456678999
Q ss_pred cccCHHHHHHHHHH
Q 011645 430 TELSSEDAVKSLST 443 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~ 443 (480)
++.|++++++++..
T Consensus 148 ~~~~v~~l~~~l~~ 161 (163)
T cd00880 148 TGEGIDELREALIE 161 (163)
T ss_pred ccCCHHHHHHHHHh
Confidence 99999999999864
No 145
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.66 E-value=9.4e-16 Score=142.81 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=100.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+.++..... +..|..|..+...-.+..+. . .-.+.+|||||..+. .....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~-------~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG----K--PVNLGLWDTAGQEDY-------DRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEECC----E--EEEEEEEECCCchhh-------hhhhh
Confidence 4799999999999999999986542 22232222111111111111 0 126889999997442 11223
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 418 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~~l 418 (480)
.++..+|++|+|+|++++++++... .|..++.... .+.|+++|+||+|+.......+ +..+..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 3567899999999999988888774 4666666543 3689999999999964322111 111122
Q ss_pred Hhc---CceeeecccccCHHHHHHHHHH
Q 011645 419 LKI---GCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 419 ~~~---g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.++ .+.++|+++++|++++++.+..
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 233 4579999999999999999874
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=1.5e-15 Score=140.39 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=101.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC----------------CCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
+|+++|.+|||||||+|+|++....... ..++|.+.....+... ...+.+|||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence 4899999999999999999877543311 1223333333222222 236899999998
Q ss_pred cccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHH
Q 011645 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL 414 (480)
Q Consensus 338 ie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l 414 (480)
.+ +...+..++..+|++++|+|++.+....... +...+.. ...|+++|+||+|+.... ...+.+
T Consensus 73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 73 ED-------FSSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred HH-------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 54 2334556678899999999998765443333 3333332 368999999999997532 223344
Q ss_pred HHHHHh----------------cCceeeecccccCHHHHHHHHHHhc
Q 011645 415 TEEILK----------------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 415 ~~~l~~----------------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.+.. ..+.++++..+.|+++++++|...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 444433 3345789999999999999998665
No 147
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.66 E-value=1e-15 Score=143.43 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=106.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+++|||||+.++...... ..|..|.-+...-.+..+. . .-.+.+|||+|..+. .....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~~~~----~--~v~l~i~Dt~G~~~~-------~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVSVDG----N--TVNLGLWDTAGQEDY-------NRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcceeeeEEEEEECC----E--EEEEEEEECCCCccc-------cccch
Confidence 58999999999999999999976542 2232222111111121111 1 126899999998543 11223
Q ss_pred hhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--------------HHHHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEE 417 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--------------e~~~~l~~~ 417 (480)
.++..+|++|+|+|.+++.+++.. +.|..++..+. .+.|+++|+||+|+.+.. +....+.+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 456789999999999999999887 67888887765 368999999999996421 112222222
Q ss_pred HHhcCceeeecccccCHHHHHHHHHHhc
Q 011645 418 ILKIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.....+.++||+++.+++++|+.+....
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 2112467999999999999999998654
No 148
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.66 E-value=1e-15 Score=140.67 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=101.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|+|||||++++...+.. ..+..|+.+.....+..+. .. -.+.+|||||..+... +. .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~----~~---~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGG----KQ--YLLGLYDTAGQEDYDR----LR---P 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECC----EE--EEEEEEeCCCcccccc----cc---c
Confidence 37999999999999999999876532 2233333222111222211 01 2478999999754311 11 2
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-------------HHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 418 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-------------~~l~~~l 418 (480)
..+..+|++++|+|.++..+++... .|..++..+. ...|+++|+||+|+....... ++.....
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 2456799999999999887777664 4666666542 468999999999986532211 1112222
Q ss_pred HhcC---ceeeecccccCHHHHHHHHHHh
Q 011645 419 LKIG---CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 419 ~~~g---~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..++ +.++|+.++.|++++++.+...
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 3333 5689999999999999998754
No 149
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.66 E-value=8.9e-16 Score=145.07 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=103.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|..+||||||+.++...... ..|..|.-+...-.+..+. .. -.+.+|||||.... ...+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~e~~-------~~l~~ 69 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYIPTVFDNYSAQTAVDG----RT--VSLNLWDTAGQEEY-------DRLRT 69 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-cCCCCceEeeeEEEEEECC----EE--EEEEEEECCCchhh-------hhhhh
Confidence 58999999999999999999875432 1222221111111111111 01 26889999998543 22223
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH----------------HHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~----------------~~l~ 415 (480)
.++..||++|+|+|++++++++... .|..++..+. .+.|+++|+||+|+....... +.+.
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 4567899999999999998888886 4666676543 368999999999996532211 1111
Q ss_pred HHHHhcCceeeecccccCHHHHHHHHHHhc
Q 011645 416 EEILKIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.+....+.++||+++.|++++|+++....
T Consensus 147 ~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 147 KQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 111123467899999999999999998765
No 150
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=5.5e-16 Score=142.74 Aligned_cols=148 Identities=23% Similarity=0.273 Sum_probs=94.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
.|+++|.+|||||||++++.+.... ..+..| .......+... ...+.+|||||... +...+..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt-~g~~~~~i~~~--------~~~l~i~Dt~G~~~-------~~~~~~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVPT-TGFNSVAIPTQ--------DAIMELLEIGGSQN-------LRKYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-cccccc-CCcceEEEeeC--------CeEEEEEECCCCcc-------hhHHHHH
Confidence 3799999999999999999976432 222211 11111122211 13689999999743 3344566
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHH-----H-HhcC--cee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-----I-LKIG--CDK 425 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~-----l-~~~g--~~~ 425 (480)
+++.||++++|+|+++...+...+.++.++.... .+.|+++|+||+|+..... ...+.+. + .+.+ +.+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCceEEEE
Confidence 7899999999999998765555555555554322 4799999999999875432 2222111 1 2222 334
Q ss_pred eeccc------ccCHHHHHHHHH
Q 011645 426 VTSET------ELSSEDAVKSLS 442 (480)
Q Consensus 426 ~sa~t------~~Gi~~ll~~Ls 442 (480)
+++++ ++|++++|+.|.
T Consensus 140 ~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 140 TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eeecCCCChhHHHHHHHHHHHHh
Confidence 55555 999999998764
No 151
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=1.1e-15 Score=140.68 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=101.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++.+.... ..|..|........+..+.. . -.+.+|||||..+. .....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~----~--~~l~i~Dt~G~~~~-------~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGK----Q--VELALWDTAGQEDY-------DRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCE----E--EEEEEEeCCCchhh-------hhccc
Confidence 47999999999999999999976432 22332322222222322210 1 25789999998442 11112
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 418 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~~l 418 (480)
..+..+|++++|+|+++.++++.+. .|..++..+. .+.|+++|+||+|+.......+ ...+..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 3457899999999999877766664 4556666543 3689999999999865322111 111112
Q ss_pred Hh---cCceeeecccccCHHHHHHHHHHh
Q 011645 419 LK---IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 419 ~~---~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.. ..+.++|++++.|++++++++...
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 22 246789999999999999998754
No 152
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=2e-15 Score=133.24 Aligned_cols=155 Identities=24% Similarity=0.178 Sum_probs=99.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+++|.+|+|||||+++|.........++++|.+.....+..... ...+.+|||||+.+... + ..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~~~~----~---~~ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK------TYKFNLLDTAGQEDYRA----I---RR 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE------EEEEEEEECCCcccchH----H---HH
Confidence 58999999999999999999988754466777777665554443320 02688999999654311 1 11
Q ss_pred hhhccCCEEEEecccCCC-CChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~l~~~g~~~~sa 428 (480)
.....++.++.++|.... ....... .+...+..... .+.|+++|+||+|+.... +........+....+.++++
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence 223345666666666543 2222222 33334443332 168999999999997642 22222223333445678999
Q ss_pred ccccCHHHHHHHHH
Q 011645 429 ETELSSEDAVKSLS 442 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls 442 (480)
..+.|+.+++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999874
No 153
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.7e-15 Score=148.21 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=105.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.++||||||++++...... ..|..|........+..+. . .-.+.||||+|.... ....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~~----~--~v~l~iwDTaG~e~~-------~~~~ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETEE----Q--RVELSLWDTSGSPYY-------DNVR 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEECC----E--EEEEEEEeCCCchhh-------HHHH
Confidence 368999999999999999999876432 2232222111111121111 1 126899999997432 2222
Q ss_pred hhhhccCCEEEEecccCCCCChhh-HHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-------------HHHHHHHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------RDRLQSLTEE 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-------------~e~~~~l~~~ 417 (480)
..++..||++++|+|+++.++++. ...|..++..+.+ ..|+++|+||+|+... .-..++..+.
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 345788999999999999988886 4678888887653 5799999999998631 0111223333
Q ss_pred HHhcC---ceeeeccccc-CHHHHHHHHHHhc
Q 011645 418 ILKIG---CDKVTSETEL-SSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~g---~~~~sa~t~~-Gi~~ll~~Ls~~~ 445 (480)
.+.++ +.++|+++++ +++++|..+....
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 34444 4689999998 8999999987654
No 154
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.3e-15 Score=142.65 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=104.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.++||||||++++...... ..|..|......-.+..+. . .-.+.+|||||..... .+ ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~----~--~~~l~iwDt~G~~~~~----~~---~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDE----Q--RIELSLWDTSGSPYYD----NV---RP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECC----E--EEEEEEEECCCchhhh----hc---ch
Confidence 47999999999999999999876432 2333232111111122111 1 1268899999974431 11 12
Q ss_pred hhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----------------HHHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----------------~e~~~~l~ 415 (480)
.++..||++|+|+|++++.+++.. ..|..++..+.+ ..|+++|+||+||... .+..+++.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 356789999999999999999885 778888887653 5899999999998541 11222232
Q ss_pred HHHHhcCceeeecccccC-HHHHHHHHHHh
Q 011645 416 EEILKIGCDKVTSETELS-SEDAVKSLSTE 444 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~G-i~~ll~~Ls~~ 444 (480)
+.+....+.++|++++++ ++++|..+...
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 222222456899999995 99999988753
No 155
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.65 E-value=8.9e-16 Score=148.79 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=103.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceee-eccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+++|.+|||||||+++++........|+.|.- +.....+..+. -...+.+|||||... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~------~~~~~- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG------EESTLVVIDHWEQEM------WTEDS- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC------EEEEEEEEeCCCcch------HHHhH-
Confidence 37999999999999999999765443222221110 11111121111 013689999999851 11112
Q ss_pred hhhhc-cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-HHHHHHHH--hcCceeee
Q 011645 352 LRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEIL--KIGCDKVT 427 (480)
Q Consensus 352 l~~i~-~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-~~l~~~l~--~~g~~~~s 427 (480)
.+. .+|++++|+|+++..+++....+..++..+.. ....|+++|+||+|+....+.. ++..+... ...+.++|
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 144 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETS 144 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEec
Confidence 233 79999999999998888877778877776532 2468999999999986542211 11111122 23466899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++.|++++++++....
T Consensus 145 A~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 145 AGLQHNVDELLEGIVRQI 162 (221)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998766
No 156
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=8.1e-16 Score=148.65 Aligned_cols=160 Identities=29% Similarity=0.455 Sum_probs=118.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+++|+|.+||||||..|+......+.|.|||+.-..|++++.+ ..+++.|.||++++|++++|.+++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------ceEEEecCcccccccccCCCCCceEE
Confidence 7899999999999999999999999999999999999999998875 37999999999999999999999988
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCC-CCEEEEE-eCCC---------CcChHHHHHHHHHHHHhc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVL-NKID---------LPEARDRLQSLTEEILKI 421 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kp~ivV~-NK~D---------l~~~~e~~~~l~~~l~~~ 421 (480)
...+.||++++|+|++..+ .+-..+..||+...-.+.. +|-|-+- .|.- +....+ ..+...+.++
T Consensus 135 avArtaDlilMvLDatk~e--~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~e--k~i~~ILhey 210 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSE--DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDE--KLIYTILHEY 210 (364)
T ss_pred EEeecccEEEEEecCCcch--hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccH--HHHHHHHHHH
Confidence 8888999999999999653 4445677788865433333 4433322 2211 111112 2233344444
Q ss_pred Cce--eeecccccCHHHHHHHHHHh
Q 011645 422 GCD--KVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 422 g~~--~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.+. ++-......++++++.+..+
T Consensus 211 kI~Naevl~ReD~t~DdfIDvi~gn 235 (364)
T KOG1486|consen 211 KIHNAEVLFREDCTVDDFIDVIEGN 235 (364)
T ss_pred eeccceEEEecCCChHHHHHHHhcc
Confidence 333 45556678899999988644
No 157
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=2.2e-15 Score=141.62 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=103.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+++|.++||||||++++....... .|..|. .+.....+..+.. .-.+.+|||+|.... ...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~------~~~l~iwDt~G~~~~-------~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGT------EITFSIWDLGGQREF-------INML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCE------EEEEEEEeCCCchhH-------HHhh
Confidence 379999999999999999998764322 222221 1111112222210 126899999998542 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-----HH-HHHHHHHHHHhc--Cc
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----RD-RLQSLTEEILKI--GC 423 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-----~e-~~~~l~~~l~~~--g~ 423 (480)
..++..||++++|+|++++.++++...|.+++..+.+ ...| ++|+||+|+... .+ ..+...+..+.. .+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL 143 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence 3457789999999999998888888888888876543 2356 688999998521 11 122222222333 35
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|++++++++....
T Consensus 144 ~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 144 IFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998766
No 158
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.64 E-value=2.3e-15 Score=137.39 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=98.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+......| |..+.....+.... . ...+.+|||||+.+... +. .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~----~--~~~l~~~D~~g~~~~~~----~~---~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDG----K--QVNLGLWDTAGQEEYDR----LR---P 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECC----E--EEEEEEEeCCCcccccc----cc---h
Confidence 4799999999999999999998764222111 11111111111110 0 12689999999865311 11 1
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH------------HHHHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------------LQSLTEEIL 419 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~------------~~~l~~~l~ 419 (480)
..++.+|++++|+|++++.++.... .|...+..+. ...|+++|+||+|+...... .+...+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 2346799999999999865554433 3555555544 36999999999999765432 122222333
Q ss_pred hc---CceeeecccccCHHHHHHHHH
Q 011645 420 KI---GCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 420 ~~---g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
.. .+.++|+.++.|++++++++.
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 33 456889999999999999875
No 159
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.64 E-value=1.2e-15 Score=141.45 Aligned_cols=159 Identities=14% Similarity=0.044 Sum_probs=105.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.||||||||+++++..... ..+..|+.......+..+. ....+.+|||||..+. .....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG------QDYHLEIVDTAGQDEY-------SILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC------EEEEEEEEECCChHhh-------HHHHH
Confidence 47999999999999999999976543 2233333222222222221 0125789999998542 22223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHhc--Cceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 429 (480)
..+..++.+++|+|.++..+++....++..+..+. ...+.|+++|+||+|+....+. .+.+....... .+.++++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 45667999999999998877777777666665432 2246899999999998642211 11222222333 45688999
Q ss_pred cccCHHHHHHHHHHhcC
Q 011645 430 TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~~ 446 (480)
++.|+.+++.++.....
T Consensus 147 ~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 147 ENENVEEAFELLIEEIE 163 (180)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987664
No 160
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.64 E-value=1.9e-15 Score=142.43 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=105.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.++||||||++++...... ..|..|......-.+..+. .. -.+.+|||+|..+. .....
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~----~~--~~l~iwDtaG~e~~-------~~~~~ 71 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT----QR--IELSLWDTSGSPYY-------DNVRP 71 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECC----EE--EEEEEEECCCchhh-------Hhhhh
Confidence 57999999999999999999876432 2333232211111122111 01 26899999997442 11223
Q ss_pred hhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----------------HHHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----------------~e~~~~l~ 415 (480)
.++..||++++|+|++++.+++.+ ..|..++..+.+ ..|+++|+||+|+... .+..+.+.
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 456789999999999999888886 788888887653 5899999999998641 11222332
Q ss_pred HHHHhcCceeeecccccC-HHHHHHHHHHh
Q 011645 416 EEILKIGCDKVTSETELS-SEDAVKSLSTE 444 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~G-i~~ll~~Ls~~ 444 (480)
+.+....+.++||+++.+ ++++|+.+...
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 222223466999999998 99999987653
No 161
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=141.83 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=110.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC--CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc---ccC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGK 345 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~---~~~ 345 (480)
..+.|+|+|.+|||||||||+|++++ .+.+..|+.|..++...+. +.+.++|.||+--..- ..+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCcccccCCHHHHH
Confidence 55679999999999999999999988 5779999999999887763 3589999999842110 011
Q ss_pred ccch---hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH---HHHHHHHH
Q 011645 346 GLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL 419 (480)
Q Consensus 346 gl~~---~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~---~~l~~~l~ 419 (480)
.... .+++.-+.-.++++|+|+..+....+.+. .+.+.. .+.|++||+||+|.....+.. ..+.+.+.
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em-~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREM-IEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 1222 22332234678899999998765555543 344554 469999999999998765543 33333332
Q ss_pred hc-C----ceeeecccccCHHHHHHHHHHhc
Q 011645 420 KI-G----CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~~-g----~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.. . +...++.+..|++++.+.|.+..
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 11 1 34568889999999999887655
No 162
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=1.3e-15 Score=135.76 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+|+|++.... +.. |. .+. + .-.+|||||.... ..........
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~---------~--~~~~iDt~G~~~~---~~~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVE---------Y--NDGAIDTPGEYVE---NRRLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEE---------E--cCeeecCchhhhh---hHHHHHHHHH
Confidence 7999999999999999999976532 111 11 111 1 1268999997311 0111122234
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---Cceeeeccc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSET 430 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa~t 430 (480)
.++.+|++++|+|++++.+.... .+.+ . ..+|+++|+||+|+.+.....+...+..+.. .+.++++++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~-~~~~---~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP-GFAS---I-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh-hHHH---h-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 57899999999999987765442 2221 1 1359999999999865322233333333333 456789999
Q ss_pred ccCHHHHHHHHH
Q 011645 431 ELSSEDAVKSLS 442 (480)
Q Consensus 431 ~~Gi~~ll~~Ls 442 (480)
+.|++++++++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 163
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=1.2e-15 Score=151.29 Aligned_cols=172 Identities=23% Similarity=0.228 Sum_probs=123.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc----
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 344 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~---- 344 (480)
.....|++||.||||||||.|.+.+.+... +..+.||.....|++.-+. .++++.||||++...+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--------TQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--------TQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--------eEEEEecCCcccccchhhhHHH
Confidence 345579999999999999999999999854 8899999999999987553 389999999998753211
Q ss_pred -CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHH----------
Q 011645 345 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS---------- 413 (480)
Q Consensus 345 -~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~---------- 413 (480)
..+-....+.+++||++++|+|+++.-..-. -.++..|+.|. ..|-++|.||+|.......+-.
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l 216 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGEL 216 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh----cCCceeeccchhcchhhhHHhhhHHhcccccc
Confidence 1122234566788999999999996322222 23556677764 6899999999998764332222
Q ss_pred ------HHHHHHhcC----------c------eeeecccccCHHHHHHHHHHhcCcccccccc
Q 011645 414 ------LTEEILKIG----------C------DKVTSETELSSEDAVKSLSTEGGEADLLSSV 454 (480)
Q Consensus 414 ------l~~~l~~~g----------~------~~~sa~t~~Gi~~ll~~Ls~~~~~~~~~~~~ 454 (480)
+.+.+.... | ..+|+.+++|++++-++|......-+++.+.
T Consensus 217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a 279 (379)
T KOG1423|consen 217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPA 279 (379)
T ss_pred chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCc
Confidence 222232222 3 4679999999999999998777555544433
No 164
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=1.2e-15 Score=142.45 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=104.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.-.+|+++|++|||||||++.|...+.. . ...|...+...+.+.. ..+.+||++|... +...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~--~~pT~g~~~~~i~~~~--------~~~~~~d~gG~~~-------~~~~ 74 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-E--TIPTIGFNIEEIKYKG--------YSLTIWDLGGQES-------FRPL 74 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-E--EEEESSEEEEEEEETT--------EEEEEEEESSSGG-------GGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-c--cCcccccccceeeeCc--------EEEEEEecccccc-------cccc
Confidence 3467999999999999999999864321 1 1113223333333322 2789999999733 3445
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--Hhc------C
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKI------G 422 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~~------g 422 (480)
|..++..+|+++||||+++.+...+....+.++.. .+.+...|++|++||+|+..+.. .+++.+.+ ..+ .
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEE
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceE
Confidence 67778899999999999986655544444444432 22345799999999999986532 23333332 222 2
Q ss_pred ceeeecccccCHHHHHHHHHHh
Q 011645 423 CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+..|++.+++|+.+.++||.+.
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhc
Confidence 5588999999999999999753
No 165
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.63 E-value=2.7e-15 Score=138.65 Aligned_cols=153 Identities=19% Similarity=0.142 Sum_probs=101.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|+|||||++++.+... ...|+.|+.+.....+..+.. ...+.+|||||..+... + .-
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~----~---~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGK------PVRLQLCDTAGQDEFDK----L---RP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCE------EEEEEEEECCCChhhcc----c---cc
Confidence 3799999999999999999986532 344555543322222222110 12678999999854311 1 12
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----------------HHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----------------~~~~l~ 415 (480)
..++.+|++++|+|++++.+++... .|..++.... ...|+++|+||+|+..... ....+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 2457899999999999887777663 4666666432 3589999999999864321 112222
Q ss_pred HHHHhcCceeeecccccCHHHHHHHHH
Q 011645 416 EEILKIGCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
+......+.++|++++.|++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 222122567899999999999998764
No 166
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.63 E-value=3.4e-15 Score=137.08 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=102.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+.++...... ..++ +|.......+..+.. ...+.+|||+|... ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~~------~~~l~i~D~~g~~~------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDGQ------SHLLLIRDEGGAPD------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECCE------EEEEEEEECCCCCc------------hh
Confidence 7999999999999999988754321 1122 111111112222210 12588999999832 12
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC--hH----HHHHHHHHHHHhcCceeee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--AR----DRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~--~~----e~~~~l~~~l~~~g~~~~s 427 (480)
+++.+|++++|+|.++..+++....|+.++..+. .....|+++|+||+|+.. .. +..+.+.+......+.+||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 3467999999999999999999888888887654 224579999999999852 11 1222333333335678999
Q ss_pred cccccCHHHHHHHHHHh
Q 011645 428 SETELSSEDAVKSLSTE 444 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~ 444 (480)
|+++.|++++|+.+...
T Consensus 141 Ak~~~~i~~~f~~~~~~ 157 (158)
T cd04103 141 ATYGLNVERVFQEAAQK 157 (158)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999998743
No 167
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.9e-15 Score=140.97 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=121.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCcee--eeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT--l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
..+++|.++|.++||||+|+-++......-.. .+| ++-....+.++.. ...+++|||+|+.. .
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g~------~i~lQiWDtaGQer-------f 74 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDGK------KIKLQIWDTAGQER-------F 74 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCCe------EEEEEEEEcccchh-------H
Confidence 46789999999999999999999976433211 122 2333334444331 23689999999843 4
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCc
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGC 423 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~ 423 (480)
...+-.+++.|+.+++|+|.++..+++....|+..++++.++ ..|.++|.||+|+...+ +..+.+...+ .+.+
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F 151 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKF 151 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccccccHHHHHHHHHHh-CCeE
Confidence 556778889999999999999999999999999999998764 79999999999998743 3334444333 3456
Q ss_pred eeeecccccCHHHHHHHHHHhcC
Q 011645 424 DKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.++||+++.+++++|..|+....
T Consensus 152 ~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 152 FETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred EEccccCCCCHHHHHHHHHHHHH
Confidence 68899999999999999997764
No 168
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=7.9e-15 Score=142.64 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=101.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|||.++||||||+++++..... ..|..|........+..+.. .-.+.||||+|..+. .....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~------~v~L~iwDt~G~e~~-------~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKR------RIELNMWDTSGSSYY-------DNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCE------EEEEEEEeCCCcHHH-------HHHhH
Confidence 47999999999999999999975432 23333322111112222211 126889999998542 11112
Q ss_pred hhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----------------HHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT 415 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----------------~~~~l~ 415 (480)
.++..+|++|+|+|++++++++.. ..|..++..+. ...|+++|+||+|+..... ..+.+.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 346789999999999998888877 44555665544 3689999999999965311 111222
Q ss_pred HHHHhcCceeeeccccc-CHHHHHHHHHHhc
Q 011645 416 EEILKIGCDKVTSETEL-SSEDAVKSLSTEG 445 (480)
Q Consensus 416 ~~l~~~g~~~~sa~t~~-Gi~~ll~~Ls~~~ 445 (480)
+.+....+.+||++++. +++++|+......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 22222246689999888 5999999877643
No 169
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.60 E-value=1.8e-14 Score=136.08 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=89.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc-cCC---------------CceeeeccceeccCCCCCCccccCCceEEecCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
+.+|+++|.+|+|||||+++|+.....+ ..+ .++|.......+... ...+.+||||
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp 73 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP 73 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence 3579999999999999999998632211 111 223333332233222 1368999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHH
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 413 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~ 413 (480)
|+.+ +......++..+|++++|+|+++.. ......++..+.. .+.|+++|+||+|+... .+..++
T Consensus 74 G~~~-------~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~ 140 (194)
T cd01891 74 GHAD-------FGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred CcHH-------HHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 2334456778899999999998742 2333333333332 36899999999999643 223444
Q ss_pred HHHHHHh---------cCceeeecccccCH
Q 011645 414 LTEEILK---------IGCDKVTSETELSS 434 (480)
Q Consensus 414 l~~~l~~---------~g~~~~sa~t~~Gi 434 (480)
+.+.+.. ..+.+++++++.|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 141 VFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHHHhCCccccCccCEEEeehhccccc
Confidence 5554422 23457788888665
No 170
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=1.1e-14 Score=138.81 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=99.2
Q ss_pred ceEEEecCCCCChHHHHH-HHhcCCCC----ccCCCceee--eccceeccC--CC--CCCccccCCceEEecCCcccccc
Q 011645 273 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTL--MPNLGRLDG--DP--TLGAEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLln-aLt~~~~~----ia~~pfTTl--~p~~g~v~~--~~--~~~~~~~~~~~~l~DTPGlie~a 341 (480)
.+|+++|.+|||||||+. ++.+.... ...|..|.- +...-.+.. .. ..+.. .-.+.+|||+|..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~--~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGV--SVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCE--EEEEEEEeCCCChhh-
Confidence 589999999999999995 56543221 122222221 100000000 00 00011 126899999998431
Q ss_pred cccCccchhhhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-------------
Q 011645 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA------------- 407 (480)
Q Consensus 342 ~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~------------- 407 (480)
+. ..++..||++++|+|++++.+++... .|.+++..+. ...|+++|+||+|+...
T Consensus 80 -----~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 80 -----DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred -----hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhcccccc
Confidence 11 12567899999999999998888886 5777887654 35799999999998631
Q ss_pred ----------HHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHH
Q 011645 408 ----------RDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 408 ----------~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.+..+.+.+.+. ..+.++||++++|++++|+.+..
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence 122223332222 34678999999999999998864
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.60 E-value=6.5e-15 Score=135.41 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=92.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|||||||+|+|.+..... .+| +.+.+.. ..+|||||+.... ..+.+....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~-----~~v~~~~----------~~~iDtpG~~~~~---~~~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKT-----QAVEFND----------KGDIDTPGEYFSH---PRWYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccc-----eEEEECC----------CCcccCCccccCC---HHHHHHHHH
Confidence 69999999999999999999764211 111 1222111 1269999974321 112233344
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc----Cceeeecc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKVTSE 429 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~~sa~ 429 (480)
.+..+|++++|+|++..+..... + +..+. ..+|+++|+||+|+.... .+.+.+.+... .+.++|+.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~--~---~~~~~---~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~p~~~~Sa~ 130 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA--G---LLDIG---VSKRQIAVISKTDMPDAD--VAATRKLLLETGFEEPIFELNSH 130 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH--H---HHhcc---CCCCeEEEEEccccCccc--HHHHHHHHHHcCCCCCEEEEECC
Confidence 57899999999999976543221 1 22111 357999999999986532 23344444444 46689999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
+++|++++++.+.+..
T Consensus 131 ~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 131 DPQSVQQLVDYLASLT 146 (158)
T ss_pred CccCHHHHHHHHHHhc
Confidence 9999999999997666
No 172
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=4.6e-15 Score=163.10 Aligned_cols=148 Identities=25% Similarity=0.393 Sum_probs=104.7
Q ss_pred cCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--cCccchhhhhhhc
Q 011645 279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR 356 (480)
Q Consensus 279 G~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~~gl~~~fl~~i~ 356 (480)
|.||||||||+|+|++.+..++++|++|.+...+.+.+++ .++.+|||||+.+.... .+.+.+.++. .+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--------~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--------EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NE 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--------eEEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence 8999999999999999988889999999999888776543 26899999998654221 1222233222 24
Q ss_pred cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCceeeecccccC
Q 011645 357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVTSETELS 433 (480)
Q Consensus 357 ~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~sa~t~~G 433 (480)
.+|++++|+|+++.+ .... +..++.. .++|+++|+||+|+.+... ..+.+.+.+ ...+.++++++++|
T Consensus 72 ~aDvvI~VvDat~le--r~l~-l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l-g~pvv~tSA~tg~G 142 (591)
T TIGR00437 72 KPDLVVNVVDASNLE--RNLY-LTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERL-GVPVVPTSATEGRG 142 (591)
T ss_pred CCCEEEEEecCCcch--hhHH-HHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-CCCEEEEECCCCCC
Confidence 789999999998743 2222 2223332 3689999999999864322 122232222 23566899999999
Q ss_pred HHHHHHHHHHh
Q 011645 434 SEDAVKSLSTE 444 (480)
Q Consensus 434 i~~ll~~Ls~~ 444 (480)
++++++.+.+.
T Consensus 143 i~eL~~~i~~~ 153 (591)
T TIGR00437 143 IERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=7.8e-15 Score=140.73 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=92.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC-------------------------------CCceeeeccceeccCCCCCCc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDPTLGA 322 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~-------------------------------~pfTTl~p~~g~v~~~~~~~~ 322 (480)
+|+|+|.+|+|||||+++|+.....+.. ..++|++.....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 5899999999999999999765433320 1455666655555433
Q ss_pred cccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 323 ~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
+.++.++||||+.+ +.......+..+|++|+|+|++.+...+.. .+...+..+. ..++|+|+||+
T Consensus 76 ---~~~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~~----~~~iIvviNK~ 140 (208)
T cd04166 76 ---KRKFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLLG----IRHVVVAVNKM 140 (208)
T ss_pred ---CceEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHcC----CCcEEEEEEch
Confidence 23789999999843 223345667889999999999875432222 2223333221 24578899999
Q ss_pred CCcCh-HH----HHHHHHHHHHhcC-----ceeeecccccCHHHH
Q 011645 403 DLPEA-RD----RLQSLTEEILKIG-----CDKVTSETELSSEDA 437 (480)
Q Consensus 403 Dl~~~-~e----~~~~l~~~l~~~g-----~~~~sa~t~~Gi~~l 437 (480)
|+... .+ ...++.+.+..++ +.++|+.++.|+.+.
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 99742 22 2234444444554 457899999888743
No 174
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.58 E-value=1.2e-14 Score=136.47 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=102.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.+|+|||||+++|...... ..+..|+.+.....+..+. ....+.+|||||..+... +. .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~~----~~---~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDG------KPVQLALWDTAGQEEYER----LR---P 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECC------EEEEEEEEECCCChhccc----cc---h
Confidence 37999999999999999999854322 1222222222122222111 112578999999854311 11 1
Q ss_pred hhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--------------HHHHHHHHH
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEE 417 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--------------e~~~~l~~~ 417 (480)
.++..+|++++|+|.++.++++.+. .|..++..+. ...|+++|+||+|+.... +....+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 2456799999999999887777765 4777776543 358999999999985311 112222222
Q ss_pred HHhcCceeeecccccCHHHHHHHHHHhc
Q 011645 418 ILKIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+....+.++|++++.|+++++++++...
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 2223567899999999999999998665
No 175
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=3.1e-14 Score=128.02 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=99.8
Q ss_pred eEEEecCCCCChHHHHHHHhc--CCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc------ccC
Q 011645 274 DVGLVGLPNAGKSTLLAAITH--AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGK 345 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~--~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~------~~~ 345 (480)
+|+++|.+|||||||+|+|++ .....+..+++|.......+. ..+.++||||+..... .-.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~D~~g~~~~~~~~~~~~~~~ 69 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-----------DKFRLVDLPGYGYAKVSKEVKEKWG 69 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-----------CeEEEecCCCccccccCHHHHHHHH
Confidence 589999999999999999994 334456666677655433221 2689999999855311 001
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHH---
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL--- 419 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~--- 419 (480)
.+...++...+.++++++|+|.......... .+.+.+.. .+.|+++|+||+|+....+ ....+...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 1222334444567899999999865433332 23444554 2479999999999964322 1222222332
Q ss_pred -hcCceeeecccccCHHHHHHHHHHh
Q 011645 420 -KIGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 420 -~~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
...+.++++.++.++.+++++|.+.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 2345588999999999999998753
No 176
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3e-14 Score=133.28 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=113.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.||+++|.-+|||||||+++.-....-.-.+..-++-....+.+.+. .-++++|||+|+.. +....-
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~------~vrLQlWDTAGQER-------Frslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQER-------FRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc------EEEEEEEecccHHH-------Hhhhhh
Confidence 79999999999999999999865432111111112222222322211 13789999999843 344455
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHH-HHHhcC--ceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILKIG--CDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~-~l~~~g--~~~~sa~ 429 (480)
.+++.+.++|.|+|+++..++++...|++.+...... ...-+++|.||.||.+.++...+-.+ ...+++ +.+++++
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak 168 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAK 168 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEeccc
Confidence 7889999999999999999999999999999875531 23558889999999986543322222 223343 5588999
Q ss_pred cccCHHHHHHHHHHhcCcc
Q 011645 430 TELSSEDAVKSLSTEGGEA 448 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~~~~ 448 (480)
++.++.++|..+++.+...
T Consensus 169 ~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCCCHHHHHHHHHHhccCc
Confidence 9999999999998877543
No 177
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.5e-14 Score=135.02 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=113.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-----cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
.||+|+|..|||||||+-++...+... -.-.|-|.....+.- .-++.||||+|+... .++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~-----------~ikfeIWDTAGQERy----~sl 70 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDN-----------TIKFEIWDTAGQERY----HSL 70 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCc-----------EEEEEEEEcCCcccc----ccc
Confidence 689999999999999999998665321 112233432221110 126889999999654 334
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCce
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCD 424 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~ 424 (480)
..+ +++.|+++|+|+|+++.+++...+.|..||+...+ .+.-+.+|.||+||...++ ..++....... +.+.
T Consensus 71 apM---YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 71 APM---YYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred ccc---eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEE
Confidence 433 45789999999999999999999999999997553 3455677999999987432 23333333333 4566
Q ss_pred eeecccccCHHHHHHHHHHhcCcccc
Q 011645 425 KVTSETELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
++|++++.++++++..+.+.+.....
T Consensus 146 ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 146 ETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEecccccCHHHHHHHHHHhccCccc
Confidence 99999999999999999988855443
No 178
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.57 E-value=2.3e-14 Score=137.11 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=103.0
Q ss_pred ecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhc
Q 011645 278 VGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 356 (480)
Q Consensus 278 vG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~ 356 (480)
||.++||||||++++...... ..|..|. .+.....+..+. . .-.+.||||||.... ...+..++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~Tig~~~~~~~~~~~~----~--~~~l~iwDt~G~e~~-------~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNR----G--PIRFNVWDTAGQEKF-------GGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECC----E--EEEEEEEECCCchhh-------hhhhHHHhc
Confidence 699999999999999865432 1222221 111111121111 0 126899999998442 223345678
Q ss_pred cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH--HhcCceeeecccccCH
Q 011645 357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTSETELSS 434 (480)
Q Consensus 357 ~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l--~~~g~~~~sa~t~~Gi 434 (480)
.+|++|+|+|+++..+++....|..++..+. .+.|+++|+||+|+.......+.+ ... ....+.++|++++.|+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNF 142 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCH
Confidence 8999999999999988888888888888754 368999999999986421111111 111 2345779999999999
Q ss_pred HHHHHHHHHhcCc
Q 011645 435 EDAVKSLSTEGGE 447 (480)
Q Consensus 435 ~~ll~~Ls~~~~~ 447 (480)
+++|++|......
T Consensus 143 ~~~F~~l~~~i~~ 155 (200)
T smart00176 143 EKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999977643
No 179
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.57 E-value=2.1e-14 Score=130.82 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=109.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce----eccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.+|.++|+.||||||++++|.+..+. ++.|..| .+.+.. .++.+||+.|+. .+.
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~-------~i~pt~gf~Iktl~~~~--------~~L~iwDvGGq~-------~lr 74 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTD-------TISPTLGFQIKTLEYKG--------YTLNIWDVGGQK-------TLR 74 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcc-------ccCCccceeeEEEEecc--------eEEEEEEcCCcc-------hhH
Confidence 57999999999999999999987532 2233332 232222 279999999984 467
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHH---HHHHHHHHhc--
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL---QSLTEEILKI-- 421 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~---~~l~~~l~~~-- 421 (480)
..|..+++.+|++|||||.+++-..++....+.+|-. .+.+.+.|+++++||.|+..+ .+.+ -.+.+.+...
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~ 153 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW 153 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc
Confidence 7788899999999999999987666666555555544 456678999999999999843 1111 2233333433
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+..|++.+++++.+.++||....
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHH
Confidence 456899999999999999998665
No 180
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.57 E-value=1.5e-14 Score=131.30 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=109.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
||+++|.+++|||||++++.+....- .+..|. .+.....+..+. ..-.+.+||++|..+. .....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~-------~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDG------KPVNLEIWDTSGQERF-------DSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETT------EEEEEEEEEETTSGGG-------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccc------cccccccccccccccc-------ccccc
Confidence 69999999999999999999765322 222221 222222232221 1126899999997432 11112
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
..++.+|++++|+|.++.++++.+..|..++..+.+ ...|+++|+||.|+.... +..+.+...+. ..+.++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 346789999999999999999999999999998875 358999999999988632 22333433333 56779999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.++.++|..+....
T Consensus 144 ~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 144 KNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.56 E-value=2.4e-14 Score=134.84 Aligned_cols=156 Identities=23% Similarity=0.314 Sum_probs=101.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccC------------------CCceeeeccceeccCCCCCCccccCCceEEe
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~------------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~ 332 (480)
....|+++|..++|||||+++|+.....+.. ..+.|.......+.. ..-...++++
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~------~~~~~~i~~i 75 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK------NENNRKITLI 75 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB------TESSEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc------cccccceeec
Confidence 4568999999999999999999865432211 011122211111110 0112479999
Q ss_pred cCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHH
Q 011645 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDR 410 (480)
Q Consensus 333 DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~ 410 (480)
||||+.+ +.....+.+..+|++|+|||+..+...+. ...+..+.. .+.|+++|+||+|+... .+.
T Consensus 76 DtPG~~~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~-----~~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 76 DTPGHED-------FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE-----LGIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp EESSSHH-------HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH-----TT-SEEEEEETCTSSHHHHHHH
T ss_pred ccccccc-------eeecccceecccccceeeeeccccccccc-ccccccccc-----cccceEEeeeeccchhhhHHHH
Confidence 9999854 23345667788999999999997654444 334455555 35889999999999832 223
Q ss_pred HHHHHHHH-Hhc--------CceeeecccccCHHHHHHHHHHhc
Q 011645 411 LQSLTEEI-LKI--------GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 411 ~~~l~~~l-~~~--------g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++...+ +.. .+.++|+.++.|+.++++.|...+
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 33344233 222 356889999999999999997654
No 182
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=6.6e-15 Score=153.65 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=116.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc----c
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL----G 348 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl----~ 348 (480)
..+.|+|+||+|||||+|.++.+++.+.+|+|||..-..|++++.- -+++++||||+.+...+.... .
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--------lrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--------LRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--------eeeeecCCccccCcchhhhhHHHHHH
Confidence 4689999999999999999999999999999999998889887652 278999999999877665432 2
Q ss_pred hhhhhhhccCCEEEEecccCC--CCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcC-
Q 011645 349 RNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIG- 422 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g- 422 (480)
...+.|++. ++||++|.|. +.+.++.-.|.+.++- -+.++|+|+|+||+|+...+ +.-+++.+.+...+
T Consensus 241 ITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKp---LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 241 ITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKP---LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHH---HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 234677774 5789999986 4555555556666653 34689999999999987542 22334444444444
Q ss_pred --ceeeecccccCHHHHHHHHH
Q 011645 423 --CDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 423 --~~~~sa~t~~Gi~~ll~~Ls 442 (480)
+...|..+++|+.++-....
T Consensus 316 v~v~~tS~~~eegVm~Vrt~AC 337 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTAC 337 (620)
T ss_pred ceEEEecccchhceeeHHHHHH
Confidence 45778888888877544433
No 183
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=1.2e-14 Score=131.89 Aligned_cols=163 Identities=18% Similarity=0.095 Sum_probs=115.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceee--eccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
-..++|.+||..|+||||||-+++..... +...+|+ +-..-.+..+.. .-++.||||+|+...
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~------~~KlaiWDTAGqErF------- 73 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGK------RLKLAIWDTAGQERF------- 73 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCc------eEEEEEEeccchHhh-------
Confidence 34578999999999999999999876432 2222333 333333333321 137899999998543
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-HHHHHHHHhc--Cce
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCD 424 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-~~l~~~l~~~--g~~ 424 (480)
+.-.-.+++.|..+|+|+|++.++++..++.|.+||..|... .+.-.++|.||+|....+..- ++=.+...++ -+.
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi 152 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI 152 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence 333445677899999999999999999999999999999743 345578999999977432211 1122222333 366
Q ss_pred eeecccccCHHHHHHHHHHhcCcc
Q 011645 425 KVTSETELSSEDAVKSLSTEGGEA 448 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~~~ 448 (480)
++++++.++++..|++|..+....
T Consensus 153 E~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 153 ECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred EcchhhhccHHHHHHHHHHHHhcC
Confidence 999999999999999999887543
No 184
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=8.4e-14 Score=133.12 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=98.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc--c-CCCceeeeccceeccCC---------CC----------------CCcccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI--A-DYPFTTLMPNLGRLDGD---------PT----------------LGAEKY 325 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i--a-~~pfTTl~p~~g~v~~~---------~~----------------~~~~~~ 325 (480)
.|+++|+.++|||||+.+|++..... . -.-+.|+......+... +. ......
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999998652100 0 00011221111111110 00 000011
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
...+.+|||||.. .+...++..+..+|++++|+|++.+....+....+..+..+. ..|+++|+||+|+.
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~----~~~iiivvNK~Dl~ 150 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG----LKHIIIVQNKIDLV 150 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC----CCcEEEEEEchhcc
Confidence 2478999999963 245566777888999999999997432222222333333321 25799999999997
Q ss_pred ChHH---HHHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhc
Q 011645 406 EARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 406 ~~~e---~~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+ ..+.+.+.+.. ..+.++|+.+++|++++++++....
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 151 KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6432 23344444442 3466889999999999999998665
No 185
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-14 Score=135.43 Aligned_cols=163 Identities=17% Similarity=0.069 Sum_probs=117.3
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
+...+++|+++|.+++|||-||.+++..+..+...+..-++.....+..+.. .-+.+||||+|+...
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k------~vkaqIWDTAGQERy------- 76 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK------TVKAQIWDTAGQERY------- 76 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc------EEEEeeecccchhhh-------
Confidence 5677889999999999999999999988765533331112222222222211 126799999998442
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH---HhcCce
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCD 424 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l---~~~g~~ 424 (480)
....-.+.+.|...++|+|++...+++....|+.||+.+.. .+.++++|.||+||...++...+-...+ +.+.+.
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 22334567789999999999999999999999999998764 4799999999999986433222222223 336677
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++|+-...+++++++.+....
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EecccccccHHHHHHHHHHHH
Confidence 999999999999998766544
No 186
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=133.57 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=119.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-----cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
+.+.+|.++|.+|+|||||+|++...+... -...|.|.+.. ++.. ...++||||+|+...
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~---Vd~~--------~vtlQiWDTAGQERF---- 71 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQ---VDDR--------SVTLQIWDTAGQERF---- 71 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEE---EcCe--------EEEEEEEecccHHHh----
Confidence 466799999999999999999998765321 22334554332 2110 126899999998654
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC--CCCCCEEEEEeCCCCcCh------HHHHHHHHH
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEA------RDRLQSLTE 416 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kp~ivV~NK~Dl~~~------~e~~~~l~~ 416 (480)
+.|+-.| ++.+|.+++|+|+..+.+++.+..|++|+..+... ...-|+||+.||+|+... .+....+..
T Consensus 72 qsLg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~ 148 (210)
T KOG0394|consen 72 QSLGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK 148 (210)
T ss_pred hhcccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH
Confidence 2344444 45799999999999999999999999999876532 134799999999999763 334555555
Q ss_pred HHHhcCceeeecccccCHHHHHHHHHHhcCc
Q 011645 417 EILKIGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 417 ~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.-..+.+.++||+...+++++|..++.....
T Consensus 149 s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 149 SKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 5567788899999999999999999877654
No 187
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.7e-14 Score=127.26 Aligned_cols=162 Identities=18% Similarity=0.130 Sum_probs=121.0
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceee--eccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
..+.+++|++||..++|||.|+++++..-...+ .+.|+ +-...+++.... .-++.||||+|+..
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppg--qgatigvdfmiktvev~ge------kiklqiwdtagqer------ 68 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEVNGE------KIKLQIWDTAGQER------ 68 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCC--CCceeeeeEEEEEEEECCe------EEEEEEeeccchHH------
Confidence 357789999999999999999999996532221 12232 222222322211 12789999999843
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH---hcC
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIG 422 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~---~~g 422 (480)
+......+.+.|+++++|+|++...+++-+..|+.|++.|.. ...-.|+|.||+|+.+.++.-+.+.+.+. ...
T Consensus 69 -frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 69 -FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred -HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 444556677889999999999999999999999999999973 23447899999999987676666666654 446
Q ss_pred ceeeecccccCHHHHHHHHHHhcC
Q 011645 423 CDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+.+++++..++++.+|..++.++.
T Consensus 146 fletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred hhhhcccchhhHHHHHHHHHHHHH
Confidence 678999999999999999987763
No 188
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.54 E-value=6.6e-14 Score=153.57 Aligned_cols=153 Identities=22% Similarity=0.189 Sum_probs=104.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+.|+++|.+|+|||||+++|.+.......++++|.+.....+.... ...+++|||||+.+. ...
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~F-------~~~ 151 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEAF-------TSM 151 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcch-------hhH
Confidence 447899999999999999999998766656667777654433333221 126899999998542 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHHHHHH--H-Hh----c
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSLTEE--I-LK----I 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~l~~~--l-~~----~ 421 (480)
+.+.+..+|++++|+|+++....+..+.+ ..+.. .+.|+++++||+|+... ++....+.+. . .. .
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCc
Confidence 44567789999999999875444444433 22332 36899999999999753 1222222111 0 11 2
Q ss_pred CceeeecccccCHHHHHHHHHH
Q 011645 422 GCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.+.++|+.+++|++++++++..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 3568999999999999999863
No 189
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=4.5e-14 Score=122.67 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=96.6
Q ss_pred EecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhc
Q 011645 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 356 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~ 356 (480)
++|.+|+|||||+++|.+.......+..|..+.....+.... ....+.+||+||+.+... .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~~-------~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------KKVKLQIWDTAGQERFRS-------LRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------EEEEEEEEecCChHHHHh-------HHHHHhc
Confidence 589999999999999998765322222222222222221110 123689999999865321 2244567
Q ss_pred cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHH----HHHHHHhcCceeeeccccc
Q 011645 357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS----LTEEILKIGCDKVTSETEL 432 (480)
Q Consensus 357 ~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~----l~~~l~~~g~~~~sa~t~~ 432 (480)
.+|++++|+|++.+...+....+...... .......|+++|+||+|+......... .........+..+++..+.
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 89999999999987655555444211211 112357999999999999765332221 2222334567788999999
Q ss_pred CHHHHHHHHH
Q 011645 433 SSEDAVKSLS 442 (480)
Q Consensus 433 Gi~~ll~~Ls 442 (480)
++++++++|.
T Consensus 147 ~i~~~~~~l~ 156 (157)
T cd00882 147 NVEELFEELA 156 (157)
T ss_pred ChHHHHHHHh
Confidence 9999999874
No 190
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7e-14 Score=129.87 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=111.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee--ccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~--v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
..+|+.++|..+||||.||.+++..... ..+. .|+-...|. +..+. ..-++.||||.|+.. +.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~-~~hd-~TiGvefg~r~~~id~------k~IKlqiwDtaGqe~-------fr 69 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQ-PVHD-LTIGVEFGARMVTIDG------KQIKLQIWDTAGQES-------FR 69 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcc-cccc-ceeeeeeceeEEEEcC------ceEEEEEEecCCcHH-------HH
Confidence 3578999999999999999999976431 1111 333322222 11111 123689999999844 23
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH-HhcC--cee
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIG--CDK 425 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l-~~~g--~~~ 425 (480)
.-...+++.|..+|+|+|++..+++..+..|+.+++.+.. .+.-++++.||+||...++.-++--+.+ .+.+ +.+
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh
Confidence 3334566778899999999999999999999999998752 4677999999999986543322222222 2333 458
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++++++++|...+...
T Consensus 148 TSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 89999999999999887654
No 191
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.50 E-value=2.1e-13 Score=153.36 Aligned_cols=153 Identities=21% Similarity=0.181 Sum_probs=106.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+.|+|+|.+|+|||||+++|...+......+++|.+.....+.+.. ..++||||||+... ..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--------~~ItfiDTPGhe~F-------~~ 352 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--------GKITFLDTPGHEAF-------TA 352 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--------EEEEEEECCCCccc-------hh
Confidence 4668899999999999999999987666555566777655444443321 37899999998542 33
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHH---HH----h
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---IL----K 420 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~---l~----~ 420 (480)
.+.+.+..+|++|+|||+++....+..+.| ..+.. .+.|+|||+||+|+.... ....++.+. .. .
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~-----~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~ 426 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA-----AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGD 426 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh-----cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCC
Confidence 445667789999999999875444443433 22332 468999999999997531 222222211 11 1
Q ss_pred cCceeeecccccCHHHHHHHHHH
Q 011645 421 IGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 421 ~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
..+.++|+.++.|+++++++|..
T Consensus 427 vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 427 TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ceEEEEeCCCCCCchHHHHhhhh
Confidence 34678899999999999999864
No 192
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.6e-14 Score=130.57 Aligned_cols=151 Identities=23% Similarity=0.289 Sum_probs=106.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|.++|+-||||||++..|.-.+..-+ .| |+.-+...+.+.. -++++||..|+. .++..|.
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn--------~~f~vWDvGGq~-------k~R~lW~ 79 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKN--------ISFTVWDVGGQE-------KLRPLWK 79 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcc--------eEEEEEecCCCc-------ccccchh
Confidence 5799999999999999999976543211 22 3333344444442 379999999983 3566678
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhh--CCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hcCc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC 423 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~--~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~g~ 423 (480)
.+...++.+|||||.++.+...+ ..+||... .+++...|+++.+||.|++.+.. ..++.+.+. ...+
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~e---ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEE---AKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHH---HHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEE
Confidence 88899999999999998755444 34444432 23356799999999999987643 222333222 1235
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..|.+.+++|+.+.++++++..
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred eeccccccccHHHHHHHHHHHH
Confidence 5889999999999999998766
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.50 E-value=1.6e-13 Score=145.44 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=95.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------C------CCceeeeccceeccCCCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPT 319 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------~------~pfTTl~p~~g~v~~~~~ 319 (480)
....|+++|.+|+|||||+++|+.....+. + .+++|++.....+....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 346799999999999999999985443321 1 46777777666665432
Q ss_pred CCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC--CCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 320 ~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
..+.+|||||+.+ +.......+..+|++++|+|+++ ....+... ....+..+ ...|+++
T Consensus 84 -------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~----~~~~iiv 144 (425)
T PRK12317 84 -------YYFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTL----GINQLIV 144 (425)
T ss_pred -------eEEEEEECCCccc-------chhhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHc----CCCeEEE
Confidence 3799999999743 22233445678999999999986 32222222 22223322 1246899
Q ss_pred EEeCCCCcCh-HH----HHHHHHHHHHhcC-------ceeeecccccCHHH
Q 011645 398 VLNKIDLPEA-RD----RLQSLTEEILKIG-------CDKVTSETELSSED 436 (480)
Q Consensus 398 V~NK~Dl~~~-~e----~~~~l~~~l~~~g-------~~~~sa~t~~Gi~~ 436 (480)
|+||+|+... .+ ..+++.+.+...+ +.++|+.+++|+++
T Consensus 145 viNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 145 AINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 9999999752 22 2234444444443 45789999999986
No 194
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.49 E-value=2.9e-13 Score=149.02 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=104.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCC---------------CceeeeccceeccCCCCCCccccCCceEEecCCc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPG 336 (480)
+.+|+++|.+++|||||+++|+.....+... .+.|.......+.+.. .+.. ...+.+|||||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~--~~~l~liDTPG 79 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGE--TYVLNLIDTPG 79 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCC--EEEEEEEECCC
Confidence 5579999999999999999998754333211 1233322222221110 0000 12689999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHHH
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSL 414 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~l 414 (480)
+.+. ...+.+++..||++|+|+|+++....+....|...+. .+.|+++|+||+|+... .+..+++
T Consensus 80 ~~dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~el 146 (595)
T TIGR01393 80 HVDF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKEI 146 (595)
T ss_pred cHHH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHHH
Confidence 9653 3345677889999999999998766666655544433 25799999999999743 2222334
Q ss_pred HHHHHhc--CceeeecccccCHHHHHHHHHHhcC
Q 011645 415 TEEILKI--GCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 415 ~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.+.+... .+.++|++++.|++++++++.....
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 3332211 2467899999999999999987663
No 195
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.49 E-value=4.6e-13 Score=127.76 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=90.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc----------------cCCCceeeeccceeccCCCCCCccccCCceEEecCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPG 336 (480)
..|+++|.+++|||||+++|+...... .-..++|++.....+... ..++.++||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence 469999999999999999998541100 013455555544333322 23789999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHH---
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ--- 412 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~--- 412 (480)
+.+ +.....+.+..+|++++|+|+......+. ..++..+.. .++| +|+|+||+|+....+..+
T Consensus 75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~ 141 (195)
T cd01884 75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVE 141 (195)
T ss_pred HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence 853 33345666788999999999987543333 334444554 2466 779999999975433333
Q ss_pred -HHHHHHHhcC-------ceeeecccccCH
Q 011645 413 -SLTEEILKIG-------CDKVTSETELSS 434 (480)
Q Consensus 413 -~l~~~l~~~g-------~~~~sa~t~~Gi 434 (480)
++.+.+..++ +.++|+.++.++
T Consensus 142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 142 MEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 4555555544 346787776653
No 196
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=1.9e-13 Score=152.45 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=105.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+.|+|+|++|+|||||+++|..........+++|.+.....+.... ..-...+++|||||+.. +..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~----~~~~~kItfiDTPGhe~-------F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY----KDENQKIVFLDTPGHEA-------FSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe----cCCceEEEEEECCcHHH-------HHH
Confidence 4668999999999999999999998766555556666544333322110 00013799999999843 333
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHH---HHh----
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK---- 420 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~---l~~---- 420 (480)
.+.+.+..+|++|+|||+++....+..+.+. .+.. .+.|+|+|+||+|+.... +..+.+... ...
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCC
Confidence 4456778899999999998764444444332 3332 468999999999997532 112222211 111
Q ss_pred cCceeeecccccCHHHHHHHHHHh
Q 011645 421 IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 421 ~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..+.++|+.++.|+.++++.+...
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 246689999999999999988654
No 197
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=6.7e-14 Score=136.01 Aligned_cols=160 Identities=31% Similarity=0.432 Sum_probs=122.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
++|+|+|+|.+|||||+..|++....++.|.|||+....|++.+.. .++.+.|.||++|+|..++|.+++.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--------aKiqlldlpgiiegakdgkgrg~qvi 131 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--------AKIQLLDLPGIIEGAKDGKGRGKQVI 131 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--------cceeeecCcchhcccccCCCCccEEE
Confidence 5899999999999999999999999999999999999999987664 48999999999999999999999988
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHH----------------------------------------hhC---C-
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELR----------------------------------------MYN---P- 388 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~----------------------------------------~~~---~- 388 (480)
...+.|.++++|+|+-.+- ..-+.+..||+ .|. .
T Consensus 132 avartcnli~~vld~~kp~--~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAd 209 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPL--SHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSAD 209 (358)
T ss_pred EEeecccEEEEEeeccCcc--cHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchh
Confidence 8889999999999986532 22222222332 221 0
Q ss_pred ----------------CC--CCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHHHhcC
Q 011645 389 ----------------DY--LERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 389 ----------------~l--~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+. .-.|.+.++||+|-..-+| +.-........+.+++++.+++++++.+.+.+.
T Consensus 210 i~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEE----Ldii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 210 IALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEE----LDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeecCcchhhhhhhhccCceeeeeeeeecccceeeeec----cceeeeccceeecccccccchHHHHHHHhhcch
Confidence 01 1368889999999765322 211222234557789999999999999887663
No 198
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.48 E-value=1.7e-13 Score=129.99 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=100.6
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC--CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc----c
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG----L 347 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g----l 347 (480)
+|+|+|.||||||||+|+|++.+..... .+.+|...+.+..... +.++.++||||+.+....... +
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~viDTPG~~d~~~~~~~~~~~i 73 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--------GRRVNVIDTPGLFDTSVSPEQLSKEI 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--------CeEEEEEECcCCCCccCChHHHHHHH
Confidence 6999999999999999999998765433 4566776665544332 247999999999875432222 2
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHh-hCCCCCCCCEEEEEeCCCCcChHH---H----HHHHHHHHH
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEARD---R----LQSLTEEIL 419 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~-~~~~l~~kp~ivV~NK~Dl~~~~e---~----~~~l~~~l~ 419 (480)
.+.+.......|++|||+|+.. ...++.. +.+.+.. +.+. .-+++++|+|++|.....+ . -..+...++
T Consensus 74 ~~~~~~~~~g~~~illVi~~~~-~t~~d~~-~l~~l~~~fg~~-~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~ 150 (196)
T cd01852 74 VRCLSLSAPGPHAFLLVVPLGR-FTEEEEQ-AVETLQELFGEK-VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE 150 (196)
T ss_pred HHHHHhcCCCCEEEEEEEECCC-cCHHHHH-HHHHHHHHhChH-hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH
Confidence 2222333467899999999987 4444444 3444443 3321 2368899999999765321 1 123334444
Q ss_pred hcCcee--e-----ecccccCHHHHHHHHHHhc
Q 011645 420 KIGCDK--V-----TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~~g~~~--~-----sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+-.. . +...+.++.++++.+....
T Consensus 151 ~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 151 KCGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred HhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 433221 1 2345677888887776554
No 199
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=5.6e-13 Score=146.47 Aligned_cols=151 Identities=19% Similarity=0.126 Sum_probs=102.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC---ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.|+++|.+|+|||||+++|++.... ....+++|.+.....+.... ..+.+|||||+.. +...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--------~~v~~iDtPGhe~-------f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------YRLGFIDVPGHEK-------FISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--------EEEEEEECCCHHH-------HHHH
Confidence 5899999999999999999975421 12235667666554444332 3789999999733 3344
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHH---HHHHHHHHHHh------
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILK------ 420 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e---~~~~l~~~l~~------ 420 (480)
.+..+..+|++++|||++.+...+..+.+ ..+.. .+.| +++|+||+|+.+... ..+++.+.+..
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~ 140 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN 140 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56667889999999999975333333333 23332 3567 999999999976432 12233344433
Q ss_pred cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 ~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|+.+++|++++++.+....
T Consensus 141 ~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 141 AKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHH
Confidence 3456889999999999999887554
No 200
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.45 E-value=6.7e-14 Score=120.99 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC---c-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~---i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
||+++|.+|||||||+++|.+.... . ......+.......+.... ..+.+||++|..+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~------ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR--------QSLQFWDFGGQEEFYSQ------ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE--------EEEEEEEESSSHCHHCT------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc--------eEEEEEecCccceeccc------
Confidence 6899999999999999999987654 1 2222223322222332221 24789999998543211
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
....+..+|++++|+|++++.+++....+..++..........|+++|+||.|
T Consensus 67 -~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 -HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11227889999999999988777776555555544332224599999999998
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.45 E-value=7.4e-13 Score=119.91 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=97.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
-+|.|||..+||||||+++|.+.+... . -|.. +.+ .+ .++||||-- .++..+.++.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~---~-KTq~-----i~~---------~~--~~IDTPGEy---iE~~~~y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY---K-KTQA-----IEY---------YD--NTIDTPGEY---IENPRFYHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc---C-ccce-----eEe---------cc--cEEECChhh---eeCHHHHHHHH
Confidence 479999999999999999999865321 1 1111 111 11 349999931 12344555566
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCc---eeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~---~~~sa~ 429 (480)
.....||++++|.|++.+...-.-... ....+|+|-|+||+|+....+.++..++.+...|+ ..+|+.
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~fa---------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPGFA---------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCchhh---------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 667889999999999975432211110 11369999999999999656667777778877765 477999
Q ss_pred cccCHHHHHHHHH
Q 011645 430 TELSSEDAVKSLS 442 (480)
Q Consensus 430 t~~Gi~~ll~~Ls 442 (480)
+++|++++.+.|.
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999874
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.45 E-value=4.1e-13 Score=129.90 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=88.7
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-------------------------------cCCCceeeeccceeccCCCCCCc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA 322 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~~~~~ 322 (480)
.|+++|.+++|||||+.+|....-.+ ....++|++.....+...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 38999999999999999996332111 012244555544444332
Q ss_pred cccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCC-------hhhHHHHHHHHHhhCCCCCCCCE
Q 011645 323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLERPF 395 (480)
Q Consensus 323 ~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~-------~~~~~~l~~eL~~~~~~l~~kp~ 395 (480)
...+.++||||+.+. ...+.+.+..+|++|+|||+++... .+..+.+ ..+.. +..+|+
T Consensus 76 ---~~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i 140 (219)
T cd01883 76 ---KYRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART----LGVKQL 140 (219)
T ss_pred ---CeEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH----cCCCeE
Confidence 237999999998542 2345666788999999999987421 1222212 22222 123689
Q ss_pred EEEEeCCCCcCh---HH----HHHHHHHHHHhcC-------ceeeecccccCHH
Q 011645 396 IVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSE 435 (480)
Q Consensus 396 ivV~NK~Dl~~~---~e----~~~~l~~~l~~~g-------~~~~sa~t~~Gi~ 435 (480)
++|+||+|+... .+ ..+.+.+.+..++ +.++|+.++.|+.
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999999731 22 2333333444443 5578999999876
No 203
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=1.4e-12 Score=125.13 Aligned_cols=158 Identities=14% Similarity=0.090 Sum_probs=100.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||++++...... ..| .+|.......+.+.. ... .-.+.+|||+|..+. .....
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~~-~~t~~~~~~~~~~~~--~~~--~i~i~~~Dt~g~~~~-------~~~~~ 76 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE-KKY-IPTLGVEVHPLKFYT--NCG--PICFNVWDTAGQEKF-------GGLRD 76 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCccceEEEEEEEEE--CCe--EEEEEEEECCCchhh-------hhhhH
Confidence 58999999999999999765543221 111 122222111111100 000 126889999997432 11223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeeeccc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 430 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~t 430 (480)
.++..++++++|+|.++..++.....|..++.... .+.|+++|+||+|+.......+ ....... +.+.++++++
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKAR-QITFHRKKNLQYYDISAKS 152 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence 34567899999999998888877777777776543 3589999999999864321111 1122222 3456899999
Q ss_pred ccCHHHHHHHHHHhcCc
Q 011645 431 ELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~~~ 447 (480)
+.++++.+.+++.....
T Consensus 153 ~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999877644
No 204
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.44 E-value=1.3e-13 Score=137.82 Aligned_cols=164 Identities=27% Similarity=0.206 Sum_probs=120.6
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
.+-...+-|++||++|||||||+++|+.+.....+.-|.|+||+.-...... +..+.+.||-|++..- ..+
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisdL--P~~ 243 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISDL--PIQ 243 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhhC--cHH
Confidence 3555778899999999999999999997665557788999999876554432 2468899999998641 122
Q ss_pred cch---hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC--CCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc
Q 011645 347 LGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 421 (480)
Q Consensus 347 l~~---~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~ 421 (480)
+-. +.|.++..+|++|||+|++.++..++...++.-|....- ......++-|-||+|..+..-. -+..
T Consensus 244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------~E~n 316 (410)
T KOG0410|consen 244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------EEKN 316 (410)
T ss_pred HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------cccC
Confidence 333 457778889999999999999888888888777776431 1112347788999998754211 1223
Q ss_pred CceeeecccccCHHHHHHHHHHhcC
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+....++.+++|++++++.+..+..
T Consensus 317 ~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 317 LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred CccccccccCccHHHHHHHHHHHhh
Confidence 3567799999999999999877653
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.43 E-value=2e-12 Score=141.83 Aligned_cols=158 Identities=20% Similarity=0.145 Sum_probs=96.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---c----ccc---CCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---A----EKY---SSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---~----~~~---~~~~~l~DTPGlie~a~ 342 (480)
+-|+++|.+|+|||||||+|++.........++|.+.....+..+.... . ..+ ...+++|||||+...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f-- 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF-- 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH--
Confidence 4699999999999999999998754333333344432221121110000 0 000 124899999997432
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--------------
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------- 408 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-------------- 408 (480)
.....+.+..+|++++|+|+++....+.++.+ ..+.. .+.|+++|+||+|+....
T Consensus 83 -----~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 83 -----TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred -----HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 22334566789999999999975444444433 23332 368999999999996321
Q ss_pred --HH--------HHHHHHHHH-----------------hcCceeeecccccCHHHHHHHHHH
Q 011645 409 --DR--------LQSLTEEIL-----------------KIGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 409 --e~--------~~~l~~~l~-----------------~~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
+. ...+...+. ...+.++|+.+++|+++++.++..
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00 000011112 124558899999999999998753
No 206
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.43 E-value=9.1e-13 Score=126.20 Aligned_cols=121 Identities=24% Similarity=0.327 Sum_probs=77.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
+.|+|+|+++||||||+++|...+... .+ ++..++...+..... .-...+.+|||||+.. +...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~--~s~~~~~~~~~~~~~----~~~~~~~l~D~pG~~~-------~~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TV--TSIEPNVATFILNSE----GKGKKFRLVDVPGHPK-------LRDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-cc--CcEeecceEEEeecC----CCCceEEEEECCCCHH-------HHHHHH
Confidence 368999999999999999999764322 12 233444444332110 0023689999999854 345566
Q ss_pred hhhccC-CEEEEecccCCC-CChhhHHHHHHHH-HhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 353 RHLRRT-RLLVHVIDAAAE-NPVNDYRTVKEEL-RMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 353 ~~i~~a-d~ll~VvD~s~~-~~~~~~~~l~~eL-~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++..+ +++|||+|++.. ....+...++.++ ..........|+++|+||+|+..+
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 777888 999999999975 3333333232222 211111136899999999998754
No 207
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=4e-13 Score=120.55 Aligned_cols=159 Identities=19% Similarity=0.130 Sum_probs=114.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
.+++..|+|.|++|||||+-++..... ..+|..|+ .+-.+.+++..+. .-++.||||+|... +..
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirTv~i~G~------~VkLqIwDtAGqEr-------Frt 72 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRTVDINGD------RVKLQIWDTAGQER-------FRT 72 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEEeecCCc------EEEEEEeecccHHH-------HHH
Confidence 456778999999999999999986532 23343222 3444444544321 23789999999732 334
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-HHHHHHH--hcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEIL--KIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-~l~~~l~--~~g~~~~ 426 (480)
..-.+.+..+.+++|+|+++.+++...+.|++|++... ...|-++|.||.|.++...... +.+.... .+.+.++
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FET 149 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFET 149 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccceeeehHHHHHHHHhcCchheeh
Confidence 44556788999999999999999999999999999754 3688999999999987532222 2222223 3455699
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++..++++..|..+.....
T Consensus 150 SaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQVL 169 (198)
T ss_pred hhhhcccchHHHHHHHHHHH
Confidence 99999999999998876653
No 208
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.41 E-value=4.5e-13 Score=120.10 Aligned_cols=154 Identities=25% Similarity=0.336 Sum_probs=106.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.-..+.++|.-|+|||||+|.+....... +-..|.-.+...+.-.. -.+.+||+||+.. +...
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e--dmiptvGfnmrk~tkgn--------vtiklwD~gGq~r-------frsm 81 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLE--DMIPTVGFNMRKVTKGN--------VTIKLWDLGGQPR-------FRSM 81 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchh--hhcccccceeEEeccCc--------eEEEEEecCCCcc-------HHHH
Confidence 33568899999999999999987643211 11123222222222111 2689999999844 4567
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHh--hCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KI 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~--~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~ 421 (480)
|-++.+.+++++||||+++++.++.. ++||+. +.+.+.++|++|+.||.|++++-... .+.+.+. +.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~s---r~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~-~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEAS---RSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI-ALIERMGLSSITDREV 157 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhh---HHHHHHHhcchhhcCCcEEEecccccCcccccHH-HHHHHhCccccccceE
Confidence 88889999999999999987665543 345543 45678899999999999999874432 2333321 22
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
....++++...+++..++||.++.
T Consensus 158 cC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 158 CCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEcCCccHHHHHHHHHHHh
Confidence 345678999999999999998664
No 209
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.41 E-value=7e-13 Score=132.69 Aligned_cols=126 Identities=22% Similarity=0.206 Sum_probs=82.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC---Cc---c------------CCCceeeeccceeccCCCCCCccccCCceEEecCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~---~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
.|+++|.+|+|||||+++|....- ++ . ...++|++.....+... +.++.++|||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~liDTP 72 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------DHRINIIDTP 72 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--------CEEEEEEECC
Confidence 489999999999999999963211 11 1 01233333333333322 1378999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHH
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 413 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~ 413 (480)
|+.+ +...+.+.+..+|++++|+|+......++ ..++..+.. .++|+++++||+|+... ...++.
T Consensus 73 G~~d-------f~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~ 139 (270)
T cd01886 73 GHVD-------FTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQ 139 (270)
T ss_pred CcHH-------HHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 23346677888999999999987644333 334445554 35899999999999753 344556
Q ss_pred HHHHHHh
Q 011645 414 LTEEILK 420 (480)
Q Consensus 414 l~~~l~~ 420 (480)
+++.+..
T Consensus 140 l~~~l~~ 146 (270)
T cd01886 140 IREKLGA 146 (270)
T ss_pred HHHHhCC
Confidence 6665543
No 210
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=118.37 Aligned_cols=156 Identities=20% Similarity=0.192 Sum_probs=115.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee------ccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~------v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
-+++.+||..-+||||||..++..+.+--. +|++|+ ++..+. +.-++++|||+|+..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels------dptvgvdffarlie~~pg-----~riklqlwdtagqer------ 70 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS------DPTVGVDFFARLIELRPG-----YRIKLQLWDTAGQER------ 70 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC------CCccchHHHHHHHhcCCC-----cEEEEEEeeccchHH------
Confidence 457789999999999999999976643211 454443 232221 224789999999843
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-h--cC
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IG 422 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-~--~g 422 (480)
+......+.+++-.+++|+|.++..+++..+.|.+|-..+.......-+++|..|+|+...++...+-.+.+. . +.
T Consensus 71 -frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~ 149 (213)
T KOG0091|consen 71 -FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA 149 (213)
T ss_pred -HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce
Confidence 4455566778899999999999999999999999999887654444558899999999865443333333333 3 34
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++|++++.+++++++-|.+..
T Consensus 150 FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 150 FVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EEEecccCCCcHHHHHHHHHHHH
Confidence 66889999999999999888665
No 211
>CHL00071 tufA elongation factor Tu
Probab=99.40 E-value=3.5e-12 Score=134.79 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=85.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc----------------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
+....|+++|.+|+|||||+++|++....+ .-..++|++.....+..+ ..++.++|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iD 81 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVD 81 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEE
Confidence 344679999999999999999998752211 112466665544333222 13689999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~ 412 (480)
|||+.+ +.....+.+..+|++++|+|+......++.+ +...+.. .++| +|+|+||+|+....+..+
T Consensus 82 tPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~ 148 (409)
T CHL00071 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ-----VGVPNIVVFLNKEDQVDDEELLE 148 (409)
T ss_pred CCChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEccCCCCHHHHHH
Confidence 999743 3334456678899999999998754333333 3344443 3578 678999999986544333
Q ss_pred ----HHHHHHHhcC
Q 011645 413 ----SLTEEILKIG 422 (480)
Q Consensus 413 ----~l~~~l~~~g 422 (480)
++.+.+...+
T Consensus 149 ~~~~~l~~~l~~~~ 162 (409)
T CHL00071 149 LVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHHhC
Confidence 4445555544
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.40 E-value=3.2e-12 Score=140.89 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=103.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC---------------CCceeeeccceeccCCCCCCccccCCceEEecC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DT 334 (480)
+.+..|+++|..++|||||+.+|......+.. ..+.|.......+.+... ... ...+.+|||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-dg~--~~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-DGE--TYILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-CCC--cEEEEEEEC
Confidence 34568999999999999999999764322211 012333222222221100 000 126899999
Q ss_pred CcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHH
Q 011645 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQ 412 (480)
Q Consensus 335 PGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~ 412 (480)
||+.+. ...+.++++.||++|+|||++.....+....+..... .+.|+++|+||+|+.... +..+
T Consensus 82 PGh~dF-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~ 148 (600)
T PRK05433 82 PGHVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQ 148 (600)
T ss_pred CCcHHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHH
Confidence 999663 3345677889999999999998765555554443322 357999999999997532 2223
Q ss_pred HHHHHHHh--cCceeeecccccCHHHHHHHHHHhcC
Q 011645 413 SLTEEILK--IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 413 ~l~~~l~~--~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++.+.+.. ..+.++|+.++.|++++++++.....
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 33332211 12468899999999999999987653
No 213
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.39 E-value=3.8e-12 Score=122.17 Aligned_cols=124 Identities=15% Similarity=0.044 Sum_probs=83.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeee--ccceeccCCCCC-CccccCCceEEecCCcccccccccCccch
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTL-GAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~--p~~g~v~~~~~~-~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
.+|+++|.++||||||++++.+....-. +. .|+. .....+.+.... .... -.+.+|||+|..+. ..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-~~-~Tig~~~~~k~~~~~~~~~~~~~--~~l~IwDtaG~e~~-------~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-PS-WTVGCSVDVKHHTYKEGTPEEKT--FFVELWDVGGSESV-------KS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-CC-cceeeeEEEEEEEEcCCCCCCcE--EEEEEEecCCchhH-------HH
Confidence 3799999999999999999997654322 22 1221 111122221100 0011 25889999998442 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-----------------CCCCCCEEEEEeCCCCcCh
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-----------------~l~~kp~ivV~NK~Dl~~~ 407 (480)
....++..+|++|+|+|+++..+++.+..|.+++..... .....|+++|+||+|+.+.
T Consensus 70 l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 223456789999999999999999999999888875421 1135899999999999653
No 214
>PRK10218 GTP-binding protein; Provisional
Probab=99.39 E-value=5.4e-12 Score=138.88 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=103.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCcc----------------CCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia----------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
..+.+|+++|..++|||||+++|+.....+. ...+.|+......+.+.. ..+.+||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--------~~inliD 74 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--------YRINIVD 74 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--------EEEEEEE
Confidence 3567899999999999999999986432221 112344444444443322 3789999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~ 411 (480)
|||+.+. ...+.+.+..+|++++|+|++.....+. +.++..+.. .+.|.++|+||+|+..+ .+.+
T Consensus 75 TPG~~df-------~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl 141 (607)
T PRK10218 75 TPGHADF-------GGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-----YGLKPIVVINKVDRPGARPDWVV 141 (607)
T ss_pred CCCcchh-------HHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-----cCCCEEEEEECcCCCCCchhHHH
Confidence 9998553 3345667889999999999987543333 333333333 36899999999998753 3445
Q ss_pred HHHHHHHHh---------cCceeeeccccc----------CHHHHHHHHHHhcC
Q 011645 412 QSLTEEILK---------IGCDKVTSETEL----------SSEDAVKSLSTEGG 446 (480)
Q Consensus 412 ~~l~~~l~~---------~g~~~~sa~t~~----------Gi~~ll~~Ls~~~~ 446 (480)
+++.+.+.. +.+..+|+.++. ++..+++.+.....
T Consensus 142 ~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 142 DQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 555555533 235577888887 57788887776553
No 215
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3.2e-12 Score=125.91 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=117.6
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
-+.-.+|.++|.+|||||||+|+|.....+. +..+-+|..++.-...++ ...+++|||||+.++...+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~--------~~~l~lwDtPG~gdg~~~D~~~ 107 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD--------GENLVLWDTPGLGDGKDKDAEH 107 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc--------ccceEEecCCCcccchhhhHHH
Confidence 3455678899999999999999999655433 333333332322222222 2468999999998876665567
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-------------------H
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------------R 408 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-------------------~ 408 (480)
...++..+.+.|++++++|+.+++.--+.+.+++.+.. ..++++++|+|.+|.... +
T Consensus 108 r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~----~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 108 RQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIIL----GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred HHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHh----ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 77788899999999999999998777777766665553 235899999999997542 1
Q ss_pred HHHHHHHHHHHh-cCceeeecccccCHHHHHHHHHHhcCcc
Q 011645 409 DRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEGGEA 448 (480)
Q Consensus 409 e~~~~l~~~l~~-~g~~~~sa~t~~Gi~~ll~~Ls~~~~~~ 448 (480)
+..+.+.+.++. .++...+....-|++.++..+.......
T Consensus 184 ~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 184 EKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 222233333333 2455666788899999999998777543
No 216
>PRK09866 hypothetical protein; Provisional
Probab=99.39 E-value=6.6e-12 Score=136.18 Aligned_cols=114 Identities=24% Similarity=0.340 Sum_probs=77.5
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.+++++||||+.+..+ ..+.....+.+..+|+||||+|+.......+ ..+.+.|..... ..|+++|+||+|+..
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K---~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ---SVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC---CCCEEEEEEcccCCC
Confidence 4688999999975321 2244445567999999999999987544444 345566765321 259999999999864
Q ss_pred h----HHHHHHHH-HHHHh-----cCceeeecccccCHHHHHHHHHHhcC
Q 011645 407 A----RDRLQSLT-EEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 407 ~----~e~~~~l~-~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
. .+.+..+. ..+.. ..+.++|+..+.+++++++.+..+..
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 1 12222222 22222 13568899999999999999987654
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.39 E-value=5.2e-12 Score=139.55 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=101.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC---ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-|+++|.+++|||||+++|++.... .....+.|++.....+.... +..+.+|||||+.+ +...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe~-------fi~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHEK-------FLSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHHH-------HHHH
Confidence 3899999999999999999975421 12234667655444432211 13589999999843 3334
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChH---HHHHHHHHHHHhc-----
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEAR---DRLQSLTEEILKI----- 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~---e~~~~l~~~l~~~----- 421 (480)
.+..+..+|++++|||+......+..+. ...+.. .+.| ++||+||+|+.+.. +..+++.+.+...
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~eh-l~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~ 141 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREH-LAILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA 141 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566788999999999987543333333 334443 2455 57999999997532 2233444444433
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++|+.+++|++++++.|....
T Consensus 142 ~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhh
Confidence 356889999999999999997543
No 218
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.38 E-value=8.1e-13 Score=131.57 Aligned_cols=124 Identities=25% Similarity=0.286 Sum_probs=79.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc---cCC-Cce--------------eeeccceeccCCCCCCccccCCceEEecCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADY-PFT--------------TLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~-pfT--------------Tl~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
.|+|+|.+|||||||+++|......+ ... .++ |+......+... ..++.+||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--------GHKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--------CEEEEEEECc
Confidence 48999999999999999997533221 110 112 222222222221 1368999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHH
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 413 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~ 413 (480)
|..+. .....+.+..+|++++|+|++......... ++..+.. .++|+++|+||+|+... .+.++.
T Consensus 73 G~~~f-------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~ 139 (268)
T cd04170 73 GYADF-------VGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE-----AGIPRIIFINKMDRERADFDKTLAA 139 (268)
T ss_pred CHHHH-------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHH
Confidence 98542 234566778899999999999865544333 3334443 36899999999998864 334445
Q ss_pred HHHHH
Q 011645 414 LTEEI 418 (480)
Q Consensus 414 l~~~l 418 (480)
+++.+
T Consensus 140 l~~~~ 144 (268)
T cd04170 140 LQEAF 144 (268)
T ss_pred HHHHh
Confidence 54444
No 219
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.38 E-value=2.8e-12 Score=136.10 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=93.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------------CCCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+++|||||+++|+.....+. ...++|++.....+..+.
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3456799999999999999999985322111 122556655554444332
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhh--HHHHHHHHHhhCCCCCCCCEE
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFI 396 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~--~~~l~~eL~~~~~~l~~kp~i 396 (480)
..+.+|||||+.+ +.......+..+|++++|+|+++.+.... .......+..+ ...+++
T Consensus 85 --------~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~----~~~~iI 145 (426)
T TIGR00483 85 --------YEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL----GINQLI 145 (426)
T ss_pred --------eEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc----CCCeEE
Confidence 3789999999743 23334555678999999999998632211 11111112221 235799
Q ss_pred EEEeCCCCcCh-HHH----HHHHHHHHHhcC-------ceeeecccccCHHH
Q 011645 397 VVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSED 436 (480)
Q Consensus 397 vV~NK~Dl~~~-~e~----~~~l~~~l~~~g-------~~~~sa~t~~Gi~~ 436 (480)
+|+||+|+... ++. .+++.+.+...+ +.++|+.++.|+.+
T Consensus 146 VviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 146 VAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 99999999742 222 234444444443 46789999999886
No 220
>PLN00023 GTP-binding protein; Provisional
Probab=99.38 E-value=3.8e-12 Score=129.60 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=83.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCC-------CCccccCCceEEecCCcccccccccC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT-------LGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~-------~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.||+|+|..+||||||++++.+........+....+.....+.++.. .....-.-.+.||||+|....
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf----- 96 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY----- 96 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh-----
Confidence 58999999999999999999976532211111111111122222100 000000125889999998442
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC----------CCCCCCEEEEEeCCCCcC
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~----------~l~~kp~ivV~NK~Dl~~ 406 (480)
...+-.++..++++|+|+|+++..+++.+..|.+++..+.. .....|++||+||+||..
T Consensus 97 --rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 --KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred --hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 22233457789999999999999999999999999987531 112479999999999964
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.37 E-value=7.6e-12 Score=131.57 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=99.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc----------------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|.-.+|+++|.+++|||||+++|++..... .-..++|++.....+... ..++.++|
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD 81 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD 81 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence 445689999999999999999998631100 013455665433222211 23689999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~ 412 (480)
|||+.+ +.....+.+..+|++++|+|+......++.+.+ ..+.. .++| +|+|+||+|+.+.++..+
T Consensus 82 tPGh~~-------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-----~g~~~~IvviNK~D~~~~~~~~~ 148 (394)
T PRK12736 82 CPGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-----VGVPYLVVFLNKVDLVDDEELLE 148 (394)
T ss_pred CCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCEEEEEEEecCCcchHHHHH
Confidence 999743 233445666789999999999875433333333 33443 3577 678899999975443332
Q ss_pred ----HHHHHHHhcC-------ceeeeccccc--------CHHHHHHHHHHhc
Q 011645 413 ----SLTEEILKIG-------CDKVTSETEL--------SSEDAVKSLSTEG 445 (480)
Q Consensus 413 ----~l~~~l~~~g-------~~~~sa~t~~--------Gi~~ll~~Ls~~~ 445 (480)
++.+.+...+ +.++|+.++. ++.++++.+....
T Consensus 149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 3444444444 4577887762 5788888877654
No 222
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.37 E-value=4.8e-12 Score=133.58 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=98.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceecc--------------CCCCCCc----cccCCceEE
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGA----EKYSSEATL 331 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~--------------~~~~~~~----~~~~~~~~l 331 (480)
.+|+++|.+++|||||+++|++..... .-..+.|+........ ....... ......+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 479999999999999999998642110 0011233322111110 0000000 001236899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD- 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e- 409 (480)
+||||+.+ +...+...+..+|++++|||++.+. ..+..+.+ ..+... ..+|+++|+||+|+...+.
T Consensus 85 iDtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~----gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 85 VDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII----GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc----CCCeEEEEEEccccCCHHHH
Confidence 99999843 3445666777899999999999754 22222222 233332 1357999999999986432
Q ss_pred --HHHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhc
Q 011645 410 --RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 410 --~~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+++.+.+.. ..+.++|+.+++|+++++++|...+
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 23344444432 2456889999999999999998654
No 223
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.36 E-value=4.3e-12 Score=124.64 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=82.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc---cCC-Ccee--------------eeccceeccCCCCCCccccCCceEEecCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADY-PFTT--------------LMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~-pfTT--------------l~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
.|+++|.+|+|||||+++|+.....+ ... .++| +......+... +.++.+||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------~~~i~liDTP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------DTKVNLIDTP 72 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--------CEEEEEEeCC
Confidence 38999999999999999998643222 110 1111 11111112111 2378999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHH
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 413 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~ 413 (480)
|+.+. ...+.++++.+|.+++|+|++..... ..+.++..+.. .++|+++|+||+|+..+ .+.+++
T Consensus 73 G~~~f-------~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~ 139 (237)
T cd04168 73 GHMDF-------IAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQE 139 (237)
T ss_pred Cccch-------HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHH
Confidence 99542 33456678889999999999986543 33445555554 35899999999999853 456667
Q ss_pred HHHHHHh
Q 011645 414 LTEEILK 420 (480)
Q Consensus 414 l~~~l~~ 420 (480)
+++.+..
T Consensus 140 i~~~~~~ 146 (237)
T cd04168 140 IKEKLSS 146 (237)
T ss_pred HHHHHCC
Confidence 7766654
No 224
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.36 E-value=8.8e-12 Score=119.08 Aligned_cols=158 Identities=20% Similarity=0.131 Sum_probs=105.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCc-eeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pf-TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|+++|.+|||||||+++|.+........+. .+..+......... .-++.+|||+|+.+. ...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~~Dt~gq~~~-------~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-------NIKLQLWDTAGQEEY-------RSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-------EEEEEeecCCCHHHH-------HHHH
Confidence 78999999999999999999987654322221 11222222221110 125899999999653 3334
Q ss_pred hhhhccCCEEEEecccCC-CCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHH-------------H
Q 011645 352 LRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-------------E 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~-------------~ 417 (480)
-.+...++.+++|+|.+. ....+..+.|..++....+ ...|+++|.||+|+.........+.. .
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 456678999999999998 4555666777777776543 35899999999999875432211110 0
Q ss_pred --HH---hcCceeeecc--cccCHHHHHHHHHHhcC
Q 011645 418 --IL---KIGCDKVTSE--TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 418 --l~---~~g~~~~sa~--t~~Gi~~ll~~Ls~~~~ 446 (480)
.. ...+.++++. +..++.+++..+.....
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 01 1235688888 99999999998876663
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.36 E-value=1.6e-11 Score=119.58 Aligned_cols=103 Identities=22% Similarity=0.116 Sum_probs=69.5
Q ss_pred CceEEecCCcccccccccCccchhhhhhhc--cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
..+.++||||+.+. .....+.+. .+|++++|+|+..+....+.+ +...+.. .++|+++|+||+|+
T Consensus 84 ~~i~liDtpG~~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~-~l~~l~~-----~~ip~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKE-HLGLALA-----LNIPVFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcHHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence 36899999998542 233444443 689999999998765444433 3344443 35899999999998
Q ss_pred cChH---HHHHHHHHHHHh----------------------------cCceeeecccccCHHHHHHHHH
Q 011645 405 PEAR---DRLQSLTEEILK----------------------------IGCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 405 ~~~~---e~~~~l~~~l~~----------------------------~g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
.... +..+++.+.+.. ..+..+|+.+++|++++.+.|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 7543 223334444431 1455679999999999998875
No 226
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=5e-12 Score=113.44 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=114.8
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.....++.++|...+|||||+.+..+....++-+...-++-...++.... . .-++++|||+|+.. +.
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~----k--RiklQiwDTagqEr-------yr 84 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD----K--RIKLQIWDTAGQER-------YR 84 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc----c--EEEEEEEecccchh-------hh
Confidence 34556999999999999999999987754443222111222222221111 0 12689999999832 44
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcCc--ee
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC--DK 425 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g~--~~ 425 (480)
...-.+++.++.+++++|.++.+++..++.|.-.++.|. ..+.|+|+|.||||+...+- ..+.-+...+.+|+ .+
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 445567789999999999999999999999988888875 35799999999999986532 12233334445554 58
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++.+.+++++++.|....
T Consensus 163 tSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 163 TSAKENINVKQVFERLVDII 182 (193)
T ss_pred hcccccccHHHHHHHHHHHH
Confidence 89999999999999887655
No 227
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.35 E-value=8.5e-12 Score=137.28 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=101.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccC----------------CCceeeeccceeccCCCCCCccccCCceEEecCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPG 336 (480)
..|+|+|+.++|||||+++|+.....+.. .-+.|+......+.+. +.++.+|||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--------~~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--------GTKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--------CEEEEEEECCC
Confidence 46999999999999999999854222211 1123333333333322 13789999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHHH
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSL 414 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~l 414 (480)
+.+ +.....+.+..+|++++|||++... ..+.+.++..+.. .+.|+++|+||+|+... .+..+++
T Consensus 74 h~D-------F~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei 140 (594)
T TIGR01394 74 HAD-------FGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEV 140 (594)
T ss_pred HHH-------HHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHH
Confidence 855 3334567788899999999998753 3344445555554 35899999999998653 3345555
Q ss_pred HHHHHh---------cCceeeeccccc----------CHHHHHHHHHHhcC
Q 011645 415 TEEILK---------IGCDKVTSETEL----------SSEDAVKSLSTEGG 446 (480)
Q Consensus 415 ~~~l~~---------~g~~~~sa~t~~----------Gi~~ll~~Ls~~~~ 446 (480)
.+.+.. +.+.++|+.++. ++..+++.+.....
T Consensus 141 ~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 141 FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 555542 234456777774 79999998887663
No 228
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.35 E-value=2.7e-12 Score=128.25 Aligned_cols=126 Identities=24% Similarity=0.253 Sum_probs=78.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCcc---CC-----Ccee-ee-------------ccceeccCCCCCCccccCCceE
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA---DY-----PFTT-LM-------------PNLGRLDGDPTLGAEKYSSEAT 330 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia---~~-----pfTT-l~-------------p~~g~v~~~~~~~~~~~~~~~~ 330 (480)
..|+|+|++|+|||||+++|+.....+. .. .++| .+ .....+.+. +.++.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------~~~i~ 74 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------DCVIN 74 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--------CEEEE
Confidence 4699999999999999999985432221 11 1111 11 111111111 23789
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-- 408 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-- 408 (480)
+|||||+.+. .....+.+..+|++++|+|++...... ...++..+.. .++|+++++||+|+..+.
T Consensus 75 liDTPG~~df-------~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~ 141 (267)
T cd04169 75 LLDTPGHEDF-------SEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-----RGIPIITFINKLDREGRDPL 141 (267)
T ss_pred EEECCCchHH-------HHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-----cCCCEEEEEECCccCCCCHH
Confidence 9999998542 223456678899999999998754322 2334444433 368999999999987542
Q ss_pred HHHHHHHHHHH
Q 011645 409 DRLQSLTEEIL 419 (480)
Q Consensus 409 e~~~~l~~~l~ 419 (480)
+.++++++.+.
T Consensus 142 ~~~~~l~~~l~ 152 (267)
T cd04169 142 ELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHC
Confidence 33455555543
No 229
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.35 E-value=1.4e-11 Score=135.36 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=91.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC-------Cc--ccc-CCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL-------GA--EKY-SSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~-------~~--~~~-~~~~~l~DTPGlie~a~ 342 (480)
+-|+++|.+|+|||||+++|.+...........|.+.....+..+... .. ..+ ...+++|||||+...
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f-- 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF-- 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH--
Confidence 469999999999999999998764332222223322111111100000 00 000 013799999998543
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-H-------------
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-R------------- 408 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-~------------- 408 (480)
.....+.+..+|++++|+|+++....+....+ ..+.. .+.|+++|+||+|+... .
T Consensus 85 -----~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 85 -----TNLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred -----HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 22233456779999999999975333333333 33332 36899999999998521 0
Q ss_pred ------H----HHHHHHHHHHh-----------------cCceeeecccccCHHHHHHHHH
Q 011645 409 ------D----RLQSLTEEILK-----------------IGCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 409 ------e----~~~~l~~~l~~-----------------~g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
+ .+.++...+.. ..+.++|+.+++|+.++++.+.
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 0 01111122222 2345789999999999988765
No 230
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.2e-13 Score=121.20 Aligned_cols=160 Identities=22% Similarity=0.218 Sum_probs=117.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-cC----CCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
|.-..|.|+|+-|||||||+.++-...... .. .--+|.--+.|++.... ..+.+||.-|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--------~~l~fwdlgGQ------- 79 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--------APLSFWDLGGQ------- 79 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--------ceeEEEEcCCh-------
Confidence 444568999999999999999986543321 11 11234455666665442 37899999998
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----- 419 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~----- 419 (480)
+.+...|..++..|++++||||+++++.++......+.+.. ++.+.+.|+++.+||.|+....+ ..++...+.
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~-~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME-AAELDGVFGLAELI 157 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh-HHHHHHHhhhhhhc
Confidence 45677788889999999999999998877777666665554 23456899999999999987644 334444333
Q ss_pred ---hcCceeeecccccCHHHHHHHHHHhcC
Q 011645 420 ---KIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 420 ---~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
...+.++++-+++|+++.+.|+.....
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 235678999999999999999987763
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.1e-11 Score=130.37 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=96.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC-----CCc-----------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK-----PDI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~-----~~i-----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|.-..|+++|.+|+|||||+++|++.. ... .-..++|++.....+..+ ..++.++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVD 81 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEE
Confidence 445679999999999999999998621 110 013355555433333221 23689999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE-EEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i-vV~NK~Dl~~~~e~~~ 412 (480)
|||+.+ +.....+.+..+|++++|+|+......+.. .++..+.. .++|.+ +|+||+|+...++..+
T Consensus 82 tPGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~ 148 (396)
T PRK12735 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEEEecCCcchHHHHH
Confidence 999843 333445667789999999999875333332 33334443 357855 5799999975433222
Q ss_pred ----HHHHHHHhcC-------ceeeecccc----------cCHHHHHHHHHHhc
Q 011645 413 ----SLTEEILKIG-------CDKVTSETE----------LSSEDAVKSLSTEG 445 (480)
Q Consensus 413 ----~l~~~l~~~g-------~~~~sa~t~----------~Gi~~ll~~Ls~~~ 445 (480)
++.+.+..++ +.++|+.++ .++.++++.|....
T Consensus 149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 3444454433 346677666 36778888876543
No 232
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.33 E-value=4.8e-12 Score=119.20 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=69.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
..|.|+|++|+|||+|+..|+..+...+ .|++.++....... .-...+.++|+||+.. +...++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T---~tS~e~n~~~~~~~------~~~~~~~lvD~PGH~r-------lr~~~~ 67 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPT---VTSMENNIAYNVNN------SKGKKLRLVDIPGHPR-------LRSKLL 67 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B------SSEEEECCGSS------TCGTCECEEEETT-HC-------CCHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCe---eccccCCceEEeec------CCCCEEEEEECCCcHH-------HHHHHH
Confidence 4689999999999999999998743221 33444444332101 1124799999999843 455555
Q ss_pred hh---hccCCEEEEecccCCC--CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 353 RH---LRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 353 ~~---i~~ad~ll~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.. +..+..||||||++.. +..+..+.|...|..-.......|++|++||.|+..+
T Consensus 68 ~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 68 DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 54 8899999999999741 1111222333333321111246899999999999875
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.32 E-value=1.4e-11 Score=130.18 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=100.5
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCC---ccCCCceeeeccceeccCCC--------C------CC--c--cccCCceE
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP--------T------LG--A--EKYSSEAT 330 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~--------~------~~--~--~~~~~~~~ 330 (480)
-.+|+++|..++|||||+.+|++.... ..-..+.|++.......... . .. . ......+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 357999999999999999999764111 01123455544322211100 0 00 0 00113689
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 409 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e 409 (480)
+|||||..+ +...++..+..+|++++|+|++.+. ..+..+ .+..+... ..+|+++|+||+|+....+
T Consensus 89 liDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~----~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 89 FVDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII----GIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc----CCCcEEEEEEeeccccchh
Confidence 999999743 3445666677789999999999754 223333 22334332 1257899999999976432
Q ss_pred H---HHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhc
Q 011645 410 R---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 410 ~---~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. .+++.+.+.. ..+.++|+.+++|++++++.|....
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 2 2334444332 3456789999999999999998655
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.32 E-value=1.8e-11 Score=128.81 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=97.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCC------c----------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~------i----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
+...+|+++|.+++|||||+++|+..... . .-..++|++.....+..+ ..++.++|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence 44568999999999999999999863111 0 013466666543333221 23689999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE-EEEeCCCCcChHHHH-
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL- 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i-vV~NK~Dl~~~~e~~- 411 (480)
|||+.+ +.......+..+|++++|+|+..+...++. .++..+.. .+.|.+ +++||+|+....+..
T Consensus 82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~ 148 (396)
T PRK00049 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH-----cCCCEEEEEEeecCCcchHHHHH
Confidence 999843 233344556789999999999875433333 33344443 357876 589999997543332
Q ss_pred ---HHHHHHHHhcC-------ceeeeccccc----------CHHHHHHHHHHhc
Q 011645 412 ---QSLTEEILKIG-------CDKVTSETEL----------SSEDAVKSLSTEG 445 (480)
Q Consensus 412 ---~~l~~~l~~~g-------~~~~sa~t~~----------Gi~~ll~~Ls~~~ 445 (480)
.++.+.+..++ +.++++.++. ++..+++.|.+..
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 24445555443 3456666543 5677777776543
No 235
>PLN03127 Elongation factor Tu; Provisional
Probab=99.32 E-value=2.9e-11 Score=129.07 Aligned_cols=119 Identities=21% Similarity=0.244 Sum_probs=78.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC------CCCc----------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~------~~~i----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|....|+++|.+++|||||+++|++. .... .-.+++|++.....++.+ ..+++++|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEE
Confidence 55577999999999999999999732 1111 112566766544443322 23789999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD 409 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e 409 (480)
|||+.+ +.......+..+|++++|+|+......++.+ +...+.. .++| +|+|+||+|+.+.++
T Consensus 131 tPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt~e-~l~~~~~-----~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ-----VGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence 999843 2333344556799999999998754333333 3344443 3578 578899999986443
No 236
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.32 E-value=9.2e-12 Score=138.40 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=90.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC-----------CCceee----------------------eccceeccC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFTTL----------------------MPNLGRLDG 316 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-----------~pfTTl----------------------~p~~g~v~~ 316 (480)
+...+|+++|.+|+|||||+++|+.....+.. .++||. +.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34457999999999999999999876544321 233432 222222221
Q ss_pred CCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE
Q 011645 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i 396 (480)
. ..+++++||||+.+ +.......+..+|++++|||+..+...+..+.+ ..+... ..++++
T Consensus 102 ~--------~~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~ii 161 (632)
T PRK05506 102 P--------KRKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVV 161 (632)
T ss_pred C--------CceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEE
Confidence 1 23789999999743 222334557889999999999865433332222 223332 126788
Q ss_pred EEEeCCCCcC-hHHHHHHHH----HHHHhcC-----ceeeecccccCHHH
Q 011645 397 VVLNKIDLPE-ARDRLQSLT----EEILKIG-----CDKVTSETELSSED 436 (480)
Q Consensus 397 vV~NK~Dl~~-~~e~~~~l~----~~l~~~g-----~~~~sa~t~~Gi~~ 436 (480)
+|+||+|+.. .++.++.+. +.+..++ +.++|+.++.|+.+
T Consensus 162 vvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 162 LAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9999999974 233333333 3333433 45789999999874
No 237
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-11 Score=111.95 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=111.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc--cC---CCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~---~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
..++++.++|..++|||.||..+...+-+- +. ..|-+...++|- . .-+++||||+|+..
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg---K--------~vKLQIWDTAGQEr----- 70 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG---K--------TVKLQIWDTAGQER----- 70 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC---c--------EEEEEEeecccHHH-----
Confidence 457899999999999999999998765432 11 112222222221 1 13789999999843
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-HHHHHHH--hc
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEIL--KI 421 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-~l~~~l~--~~ 421 (480)
+..-...+.+.|...++|+|++..++++.+..|+...+...+ .++-++++.||.||...++..- +..+..+ .+
T Consensus 71 --FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel 146 (214)
T KOG0086|consen 71 --FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENEL 146 (214)
T ss_pred --HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccce
Confidence 333345567788999999999999999999999999887654 3567888899999987654322 2222222 34
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++++.+++++++.|-..+...
T Consensus 147 ~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 147 MFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred eeeeecccccccHHHHHHHHHHHH
Confidence 677999999999999998766554
No 238
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.31 E-value=2.8e-11 Score=115.21 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=87.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cC----CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
.+|+++|.+|||||||+|+|++..... .. ...+|... ..+... . ...+.+|||||+.+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~------~-~~~l~l~DtpG~~~~~~~---- 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP------K-FPNVTLWDLPGIGSTAFP---- 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC------C-CCCceEEeCCCCCcccCC----
Confidence 479999999999999999999854211 10 00112111 111100 0 136899999998653221
Q ss_pred chhhhhh--hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh------------HHHHHH
Q 011645 348 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------RDRLQS 413 (480)
Q Consensus 348 ~~~fl~~--i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~------------~e~~~~ 413 (480)
...+++. +..+|++++|.|.. ....+ ..+.+++..+ ++|+++|+||+|+... .+.++.
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~~~--~~~~d-~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~ 140 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISSTR--FSSND-VKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE 140 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeCCC--CCHHH-HHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH
Confidence 1223332 46789988885532 22222 3455566653 5899999999998532 122333
Q ss_pred HHHHHH----hc-----Cceeeecc--cccCHHHHHHHHHHhcC
Q 011645 414 LTEEIL----KI-----GCDKVTSE--TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 414 l~~~l~----~~-----g~~~~sa~--t~~Gi~~ll~~Ls~~~~ 446 (480)
+.+.+. .. .+..+|+. .+.++..+.+.|...+.
T Consensus 141 i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 141 IRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 333332 21 22234544 45688888887766653
No 239
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=4.6e-12 Score=114.90 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=111.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccc--eeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~--g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
-++|+++|.--+|||||+-+....+.. +...+|+.... ..+...+ ....+.||||+|+.... .++-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed------~ra~L~IWDTAGQErfH----ALGP 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVED------CRADLHIWDTAGQERFH----ALGP 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhccccccc------ceeeeeeeeccchHhhh----ccCc
Confidence 368999999999999999998866532 12223332211 1111111 12368999999986542 2232
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHH-HHHHHHhcC--ceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILKIG--CDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~-l~~~l~~~g--~~~~ 426 (480)
. +++.++.+|+|+|++++++++..+.|..||+.... ....++||.||+||.+.+..... ........| +.++
T Consensus 81 I---YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 81 I---YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred e---EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence 2 34678999999999999999999999999997643 34779999999999865432222 222223333 4578
Q ss_pred ecccccCHHHHHHHHHHhcCccc
Q 011645 427 TSETELSSEDAVKSLSTEGGEAD 449 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~~~~ 449 (480)
+++.+.|+.++|..|.++..+..
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999988765543
No 240
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.30 E-value=1.9e-11 Score=117.50 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=72.2
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC----------C---------CceeeeccceeccCCCCCCccccCCceEEecC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~----------~---------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DT 334 (480)
+|+++|.+++|||||+++|+.....+.. + .++|.......+.+... ......+.+|||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~---~~~~~~i~iiDt 78 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS---KGKSYLFNIIDT 78 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC---CCCEEEEEEEEC
Confidence 5899999999999999999865433210 1 01111111111111100 000136899999
Q ss_pred CcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 335 PGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
||+.+. .......+..+|++++|+|++........ .+..++.. .++|+++|+||+|+.
T Consensus 79 pG~~~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNF-------MDEVAAALRLSDGVVLVVDVVEGVTSNTE-RLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcch-------HHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcccC
Confidence 998542 33456778899999999999876544332 23333332 258999999999975
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.30 E-value=2.4e-11 Score=118.29 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=73.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC-CCc---------------eeeeccceeccCCCC--CCccccCCceEEecCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPT--LGAEKYSSEATLADLP 335 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~--~~~~~~~~~~~l~DTP 335 (480)
.|+++|..++|||||+.+|......+.. ..+ .|+......+.+... .....-...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999754322211 111 111111111111100 0000002368899999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
|+.+ +.......+..+|++++|+|+..+...+....+. .+.. .+.|+++|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence 9965 3344567788899999999999875554433333 3322 257999999999986
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=2.9e-11 Score=127.15 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=93.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC------C----c------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~------~----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|.-..|+++|.+++|||||+++|++... . . .-..++|++.....+... ..++.++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD 81 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD 81 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence 4456799999999999999999974310 0 0 112466666543333221 13689999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE-EEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i-vV~NK~Dl~~~~e~~~ 412 (480)
|||+.+ +.....+.+..+|++++|+|+......+..+ .+..+.. .+.|.+ +|+||+|+.+.++..+
T Consensus 82 tpGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 148 (394)
T TIGR00485 82 CPGHAD-------YVKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (394)
T ss_pred CCchHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEecccCCHHHHHH
Confidence 999853 2334456667899999999998754334333 3333443 246755 6899999986543332
Q ss_pred ----HHHHHHHhcC-------ceeeeccccc--------CHHHHHHHHH
Q 011645 413 ----SLTEEILKIG-------CDKVTSETEL--------SSEDAVKSLS 442 (480)
Q Consensus 413 ----~l~~~l~~~g-------~~~~sa~t~~--------Gi~~ll~~Ls 442 (480)
++.+.+...+ +.++|+.++. ++.++++.+.
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~ 197 (394)
T TIGR00485 149 LVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVD 197 (394)
T ss_pred HHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHH
Confidence 3445555443 3455666543 3455565554
No 243
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.6e-11 Score=109.42 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=108.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|..+|...|||||+|..|.-..+.. ..| |.-.++..+.+.. ..|.+||..|.. .++.-|.
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ip--TvGFnvetVtykN--------~kfNvwdvGGqd-------~iRplWr 79 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT-TIP--TVGFNVETVTYKN--------VKFNVWDVGGQD-------KIRPLWR 79 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc-ccc--ccceeEEEEEeee--------eEEeeeeccCch-------hhhHHHH
Confidence 478899999999999999998655321 111 2233334444432 368999999984 3566677
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhh--CCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----h--cCc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGC 423 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~--~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~ 423 (480)
+++..+..+|||+|+++.+ +++..++||... .+++...+++|.+||.|++.+.. .+++.+.++ . ..+
T Consensus 80 hYy~gtqglIFV~Dsa~~d---r~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~v 155 (180)
T KOG0071|consen 80 HYYTGTQGLIFVVDSADRD---RIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWYV 155 (180)
T ss_pred hhccCCceEEEEEeccchh---hHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccEe
Confidence 7889999999999998764 445566777642 34567789999999999997643 233333332 1 234
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.+.++.|+.+.+.||+...
T Consensus 156 qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 156 QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred eccccccchhHHHHHHHHHhhc
Confidence 5889999999999999998665
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.28 E-value=1.9e-11 Score=131.43 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=90.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC-----------CCce----------------------eeeccceeccC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDG 316 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-----------~pfT----------------------Tl~p~~g~v~~ 316 (480)
+...+|+++|.+++|||||+++|......+.. ..++ |++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 55688999999999999999999765433311 0222 22322222221
Q ss_pred CCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE
Q 011645 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i 396 (480)
+ ..+++++||||+.+ +.......+..+|++++|||+......+..+.+ ..+.... .+++|
T Consensus 105 ~--------~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg----~~~iI 164 (474)
T PRK05124 105 E--------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG----IKHLV 164 (474)
T ss_pred C--------CcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC----CCceE
Confidence 1 23789999999632 333345557889999999999875332222221 2222221 25789
Q ss_pred EEEeCCCCcCh-HHHHHHHHHHH----Hhc------CceeeecccccCHHHH
Q 011645 397 VVLNKIDLPEA-RDRLQSLTEEI----LKI------GCDKVTSETELSSEDA 437 (480)
Q Consensus 397 vV~NK~Dl~~~-~e~~~~l~~~l----~~~------g~~~~sa~t~~Gi~~l 437 (480)
+|+||+|+... .+.++.+.+.+ ... .+.++|+.+++++.++
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99999999742 33344343333 222 3557899999998653
No 245
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.28 E-value=8.8e-11 Score=117.93 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=81.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccC---------CCcee-eeccceeccCCCCCCccccCCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~ 342 (480)
++|+++|.+|+|||||+|+|.+....... ++.|+ +......+..++ ..-++.+|||||+.+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g------~~~~l~iiDTpGfgd~~~ 78 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG------VKLKLTVIDTPGFGDNIN 78 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC------EEEEEEEEecCCcccccc
Confidence 57999999999999999999987653321 22332 233222332221 112689999999865422
Q ss_pred ccCc-------cchhhhh------------hh--ccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEe
Q 011645 343 LGKG-------LGRNFLR------------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN 400 (480)
Q Consensus 343 ~~~g-------l~~~fl~------------~i--~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~N 400 (480)
.... +...|.. .+ .++|+++|++|.+.... ..+++ +.+.|.. ..|+++|+|
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin 151 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA 151 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence 1000 0001111 11 25899999999886332 22333 3344442 489999999
Q ss_pred CCCCcChHH---HHHHHHHHHHhcCceee
Q 011645 401 KIDLPEARD---RLQSLTEEILKIGCDKV 426 (480)
Q Consensus 401 K~Dl~~~~e---~~~~l~~~l~~~g~~~~ 426 (480)
|+|+....+ ..+.+.+.+...++...
T Consensus 152 K~D~l~~~e~~~~k~~i~~~l~~~~i~~~ 180 (276)
T cd01850 152 KADTLTPEELKEFKQRIMEDIEEHNIKIY 180 (276)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 999976433 23334455555555433
No 246
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.27 E-value=1.3e-11 Score=122.19 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=82.6
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc---
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--- 343 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--- 343 (480)
++..-.+|+|+|.+|||||||+|+|.+... .++.++.+|..........+ +..+.++||||+.+....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--------g~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--------GFKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCcchhhHHH
Confidence 556668999999999999999999999875 34667667766554433322 137899999999876321
Q ss_pred cCccchhhhhhhc--cCCEEEEecccCCC-CChhhHHHHHHHHHh-hCCCCCCCCEEEEEeCCCCcC
Q 011645 344 GKGLGRNFLRHLR--RTRLLVHVIDAAAE-NPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 344 ~~gl~~~fl~~i~--~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~-~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
+..+.....++++ ..|+++||..++.. ....+.. +.+.+.. |.... -.++++|+||+|...
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~-llk~I~e~fG~~i-~~~~ivV~T~~d~~~ 163 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLP-LLRAITDSFGPSI-WRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHH-HHHHHHHHhChhh-HhCEEEEEeCCccCC
Confidence 1111122223333 57889999766542 2233333 3444443 44332 257999999999763
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.27 E-value=2.9e-11 Score=135.68 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=85.6
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCC---c---cC------------CCceeeeccceeccCCCCCCccccCCceE
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPD---I---AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~---i---a~------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~ 330 (480)
...+.+|+|+|.+|+|||||+++|...... + .+ ..++|++.....+... +.++.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------~~~i~ 78 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------GHRIN 78 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--------CeEEE
Confidence 345668999999999999999999643221 1 11 2344554444444332 23799
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-- 408 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-- 408 (480)
++||||+.+. .....+.++.+|++++|+|+......++.. ++..+.. .++|+++|+||+|+..+.
T Consensus 79 liDTPG~~~~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~~~~~ 145 (689)
T TIGR00484 79 IIDTPGHVDF-------TVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR-----YEVPRIAFVNKMDKTGANFL 145 (689)
T ss_pred EEECCCCcch-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHH
Confidence 9999999653 223566788899999999999765444433 3344443 358999999999998542
Q ss_pred HHHHHHHHHH
Q 011645 409 DRLQSLTEEI 418 (480)
Q Consensus 409 e~~~~l~~~l 418 (480)
..++.+.+.+
T Consensus 146 ~~~~~i~~~l 155 (689)
T TIGR00484 146 RVVNQIKQRL 155 (689)
T ss_pred HHHHHHHHHh
Confidence 3344454443
No 248
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=9.8e-11 Score=109.06 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=108.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc-------cCCCc---eeeeccceeccCCCCCCccccCCceEEecCCcccccc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i-------a~~pf---TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a 341 (480)
..+|+++|.-+|||||++.+++.....+ ..+-. ||.....|.+.++. +..+.++||||+..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-------~~~v~LfgtPGq~R-- 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-------DTGVHLFGTPGQER-- 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-------cceEEEecCCCcHH--
Confidence 4689999999999999999999876421 12233 67777777776543 13789999999854
Q ss_pred cccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHHHHHHH-H
Q 011645 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSLTEE-I 418 (480)
Q Consensus 342 ~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~~l~~~-l 418 (480)
+...|--..+.+..++++||.+.+..... ..+.+.+.... ..|++|++||.|+..+ .+.+.++.+. +
T Consensus 81 -----F~fm~~~l~~ga~gaivlVDss~~~~~~a-~~ii~f~~~~~----~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~ 150 (187)
T COG2229 81 -----FKFMWEILSRGAVGAIVLVDSSRPITFHA-EEIIDFLTSRN----PIPVVVAINKQDLFDALPPEKIREALKLEL 150 (187)
T ss_pred -----HHHHHHHHhCCcceEEEEEecCCCcchHH-HHHHHHHhhcc----CCCEEEEeeccccCCCCCHHHHHHHHHhcc
Confidence 33333344577999999999999877633 33444555322 2899999999999875 2333333222 2
Q ss_pred HhcCceeeecccccCHHHHHHHHHHh
Q 011645 419 LKIGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 419 ~~~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
......+..+..+++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 34556677888899999999988766
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.26 E-value=3.9e-11 Score=126.73 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=87.7
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC-------------------C--------------CceeeeccceeccCCCCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------Y--------------PFTTLMPNLGRLDGDPTL 320 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~-------------------~--------------pfTTl~p~~g~v~~~~~~ 320 (480)
+|+++|.+++|||||+++|....-.+.. + -+.|++.....+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 6899999999999999999754322211 0 012233332222221
Q ss_pred CccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEe
Q 011645 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 400 (480)
Q Consensus 321 ~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~N 400 (480)
+.++.++||||+.+ +.......+..+|++++|||+..+...+..+. +..+.... .+++++|+|
T Consensus 79 -----~~~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~~~~----~~~iivviN 141 (406)
T TIGR02034 79 -----KRKFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIASLLG----IRHVVLAVN 141 (406)
T ss_pred -----CeEEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHHHcC----CCcEEEEEE
Confidence 23789999999743 23334456788999999999987543333322 22333321 246889999
Q ss_pred CCCCcCh-HHHHHHHHHH----HHhcC-----ceeeecccccCHHH
Q 011645 401 KIDLPEA-RDRLQSLTEE----ILKIG-----CDKVTSETELSSED 436 (480)
Q Consensus 401 K~Dl~~~-~e~~~~l~~~----l~~~g-----~~~~sa~t~~Gi~~ 436 (480)
|+|+... .+.++.+.+. +...+ +.++|+.+++|+.+
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9999753 2333333333 33333 45789999998875
No 250
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.25 E-value=4.1e-11 Score=114.56 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=109.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|+|||+|+..+...... .+|..|.-+...-.+..+.. . -.+.|+||+|..+. ...--
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~----~--~~l~ilDt~g~~~~-------~~~~~ 69 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGE----V--CMLEILDTAGQEEF-------SAMRD 69 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCE----E--EEEEEEcCCCcccC-------hHHHH
Confidence 57999999999999999998865432 23444433333323322211 1 25779999995443 22223
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|..++|+++++..+++....+++.+. ........|+++|+||+|+....+ ....+. ..+...+.++|+
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la-~~~~~~f~E~Sa 147 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALA-RSWGCAFIETSA 147 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHH-HhcCCcEEEeec
Confidence 45778999999999999999999999998883 333334589999999999986322 222232 223345779999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+...+++++|..|....
T Consensus 148 k~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREI 164 (196)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 99999999999988655
No 251
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=2.3e-11 Score=111.57 Aligned_cols=68 Identities=26% Similarity=0.278 Sum_probs=48.3
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
..+.|+||||+.+...... ..+.+++..+|++|||+|++......+...+.+.+... ...+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 3589999999977443333 44566778999999999999866556666665555542 34499999995
No 252
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.25 E-value=1e-11 Score=110.77 Aligned_cols=152 Identities=22% Similarity=0.291 Sum_probs=105.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccC-CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+|+++|.-||||||||..|.+.++. +.+ ..|.|. .+.++.. -.+.+||+.|. ++++-.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k-----~v~~~g~-------f~LnvwDiGGq-------r~IRpy 78 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK-----KVEYDGT-------FHLNVWDIGGQ-------RGIRPY 78 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhccccCCcceE-----EEeecCc-------EEEEEEecCCc-------cccchh
Confidence 46899999999999999999998764 222 223332 3333321 27899999997 677888
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH-------HhcCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-------LKIGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l-------~~~g~ 423 (480)
|..+++..|.++||||.++...+++...-+-||.. ...+...|+++.+||.|+..+.. .+++...+ ....+
T Consensus 79 WsNYyenvd~lIyVIDS~D~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~-~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 79 WSNYYENVDGLIYVIDSTDEKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAK-VEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcc-hHHHHHhcchhhhhhceEEe
Confidence 99999999999999998776555543322222221 12346799999999999875421 22222211 23457
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+|++-+.+|+.+..+|+....
T Consensus 157 q~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeCccccccCccCcchhhhcCC
Confidence 7999999999999999986544
No 253
>PRK12739 elongation factor G; Reviewed
Probab=99.24 E-value=3.5e-11 Score=135.05 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=85.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC---CccC---------------CCceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~---~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
..+.+|+++|.+|+|||||+++|..... .++. ..++|++.....+... +.++.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~l 77 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------GHRINI 77 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--------CEEEEE
Confidence 4567899999999999999999964311 1111 2344444444443332 237899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HH
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e 409 (480)
+||||+.+. ...+.+.+..+|++++|+|+......++. .++..+.. .++|+|+++||+|+... .+
T Consensus 78 iDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~-----~~~p~iv~iNK~D~~~~~~~~ 144 (691)
T PRK12739 78 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK-----YGVPRIVFVNKMDRIGADFFR 144 (691)
T ss_pred EcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCCHHH
Confidence 999998652 33567788899999999999876544443 34444544 35899999999999854 23
Q ss_pred HHHHHHHHH
Q 011645 410 RLQSLTEEI 418 (480)
Q Consensus 410 ~~~~l~~~l 418 (480)
.++++.+.+
T Consensus 145 ~~~~i~~~l 153 (691)
T PRK12739 145 SVEQIKDRL 153 (691)
T ss_pred HHHHHHHHh
Confidence 444454444
No 254
>PRK00007 elongation factor G; Reviewed
Probab=99.22 E-value=6.5e-11 Score=132.92 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=85.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhc---CCCCc---c------------CCCceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITH---AKPDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~---~~~~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
..+.+|+|+|.+|+|||||+++|.. ....+ . ...++|++.....+... +..+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--------~~~~~l 79 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------DHRINI 79 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--------CeEEEE
Confidence 4567899999999999999999963 21122 1 13345555544444332 237999
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HH
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e 409 (480)
+||||+.+. .....+.+..+|++|+|+|+......++.. ++..+.. .++|.++++||+|+... .+
T Consensus 80 iDTPG~~~f-------~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~-----~~~p~iv~vNK~D~~~~~~~~ 146 (693)
T PRK00007 80 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK-----YKVPRIAFVNKMDRTGADFYR 146 (693)
T ss_pred EeCCCcHHH-------HHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHH
Confidence 999998653 223566778899999999998765555544 4444544 35899999999999854 23
Q ss_pred HHHHHHHHH
Q 011645 410 RLQSLTEEI 418 (480)
Q Consensus 410 ~~~~l~~~l 418 (480)
.++.+.+.+
T Consensus 147 ~~~~i~~~l 155 (693)
T PRK00007 147 VVEQIKDRL 155 (693)
T ss_pred HHHHHHHHh
Confidence 344444444
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=99.21 E-value=7.7e-11 Score=126.70 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=83.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc----------------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|...+|+++|.+++|||||+++|+.....+ ....++|++.....+... ..++.++|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence 455789999999999999999998632221 111234444333233222 23789999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~ 412 (480)
|||+.+ +.......+..+|++++|||+......+. +.++..+.. .++| +++++||+|+...++..+
T Consensus 151 tPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 151 CPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEecccccCHHHHHH
Confidence 999854 23344566678999999999987643333 333334443 3577 778999999986443333
Q ss_pred ----HHHHHHHhcC
Q 011645 413 ----SLTEEILKIG 422 (480)
Q Consensus 413 ----~l~~~l~~~g 422 (480)
++.+.+..++
T Consensus 218 ~i~~~i~~~l~~~g 231 (478)
T PLN03126 218 LVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHHhcC
Confidence 4445555543
No 256
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.20 E-value=5.3e-11 Score=120.52 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=77.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+++|.+|+||||++|+|++.+... +.+..+|..+.......+ +.++.++||||+.+....++....
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~~ 108 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAVN 108 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHHH
Confidence 45689999999999999999999987643 555555555543332222 237999999999875332221111
Q ss_pred hhhhhh--ccCCEEEEecccCC-CCChhhHHHHHHHHH-hhCCCCCCCCEEEEEeCCCCcC
Q 011645 350 NFLRHL--RRTRLLVHVIDAAA-ENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 350 ~fl~~i--~~ad~ll~VvD~s~-~~~~~~~~~l~~eL~-~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
....++ ...|++|||.+.+. .....+.. +.+.+. .|.... -++.|||+|++|...
T Consensus 109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkq-lLk~Iqe~FG~~i-w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQ-VIRAITDSFGKDI-WRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHhhcCCCCEEEEEeccCcccCCHHHHH-HHHHHHHHhhhhh-hccEEEEEECCccCC
Confidence 111111 25899999955442 22223333 333333 344333 367999999999763
No 257
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=1.1e-10 Score=115.79 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=76.4
Q ss_pred CceEEecCCcccccccccCccchhhhhhhcc--CCEEEEecccCCCCChhhHHHHHH--HHHhhCCCCCCCCEEEEEeCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKE--ELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~~~l~~--eL~~~~~~l~~kp~ivV~NK~ 402 (480)
..++++||||..+.... ......+.+++.+ +++++||+|++......++..... ...... .++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence 36999999999875433 4566677788776 899999999987544444333221 111111 368999999999
Q ss_pred CCcChHHH--H-HHHH------------------------HHHHhc----CceeeecccccCHHHHHHHHHHhc
Q 011645 403 DLPEARDR--L-QSLT------------------------EEILKI----GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 403 Dl~~~~e~--~-~~l~------------------------~~l~~~----g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+....+. . ..+. +.+.++ .+.++++.+++|++++++++.+.+
T Consensus 173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 99865332 1 1111 112222 345789999999999999997665
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.19 E-value=1.3e-10 Score=126.51 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=82.4
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCc---cCC------Cceee-------------eccceeccCCCCCCcccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY------PFTTL-------------MPNLGRLDGDPTLGAEKY 325 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~------pfTTl-------------~p~~g~v~~~~~~~~~~~ 325 (480)
|...+..|+|+|++++|||||+++|......+ +.. ..|+. ......+.+.
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-------- 78 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-------- 78 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------
Confidence 55667889999999999999999986322111 110 01111 1111112211
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+..+.++||||+.+ +.....+.+..+|++|+|+|++.... ...+.+++.+.. .+.|+++++||+|+.
T Consensus 79 ~~~inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGHED-------FSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCChhh-------HHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 23689999999843 23345667888999999999987532 233444444443 368999999999996
Q ss_pred C--hHHHHHHHHHHHH
Q 011645 406 E--ARDRLQSLTEEIL 419 (480)
Q Consensus 406 ~--~~e~~~~l~~~l~ 419 (480)
. ..+.++.+.+.+.
T Consensus 146 ~~~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 146 IRDPLELLDEVENELK 161 (527)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4 3344555555543
No 259
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.18 E-value=1.6e-10 Score=125.60 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=82.3
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCc---cCCC------cee-------------eeccceeccCCCCCCcccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP------FTT-------------LMPNLGRLDGDPTLGAEKY 325 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~p------fTT-------------l~p~~g~v~~~~~~~~~~~ 325 (480)
|+..+..|+|+|++++|||||+++|+...-.+ +... .++ +......+.+.
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-------- 77 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-------- 77 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence 55677789999999999999999996422111 1111 111 11111112111
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+..+.+|||||+.+. .....+++..+|++|+|+|++..... ..+.++..... .+.|+++++||+|+.
T Consensus 78 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLDTPGHEDF-------SEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEECCCchhh-------HHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 136899999998543 33456678889999999999875432 33344444443 368999999999987
Q ss_pred Ch--HHHHHHHHHHH
Q 011645 406 EA--RDRLQSLTEEI 418 (480)
Q Consensus 406 ~~--~e~~~~l~~~l 418 (480)
.. .+.++++++.+
T Consensus 145 ~a~~~~~l~~i~~~l 159 (526)
T PRK00741 145 GREPLELLDEIEEVL 159 (526)
T ss_pred ccCHHHHHHHHHHHh
Confidence 54 23445555544
No 260
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.17 E-value=4e-10 Score=117.19 Aligned_cols=124 Identities=24% Similarity=0.293 Sum_probs=84.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC----CCC-----------c-cCCCc---eeeeccc---eeccCCCCCCccccCCceE
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT 330 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~----~~~-----------i-a~~pf---TTl~p~~---g~v~~~~~~~~~~~~~~~~ 330 (480)
..||++|+.|+|||||+|++++. ..+ + .+.++ ||.+|.. -.+..... ....-++.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~---~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ---EGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc---CCCcccEE
Confidence 45999999999999999999987 433 3 56778 8888866 33332211 11234799
Q ss_pred EecCCcccccccccCccchh----------------------hhhhhc-cCCEEEEec-ccCC-----CCChhhHHHHHH
Q 011645 331 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE 381 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~----------------------fl~~i~-~ad~ll~Vv-D~s~-----~~~~~~~~~l~~ 381 (480)
++||+|+......+.--... +.+.+. ++++.|+|. |.+- .+..+.-+.+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999997633222111111 345566 899999999 8861 123344456778
Q ss_pred HHHhhCCCCCCCCEEEEEeCCCC
Q 011645 382 ELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 382 eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
+|+. .++|+++|+||+|-
T Consensus 175 eLk~-----~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE-----LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh-----cCCCEEEEEECcCC
Confidence 8886 47999999999994
No 261
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.2e-10 Score=120.51 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=107.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
+=|.++|+.--||||||.+|-+.+.+..+--+.|.+.--..+..+.. -...++++||||+--. ...-.
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeAF-------t~mRa 73 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEAF-------TAMRA 73 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHHH-------HHHHh
Confidence 55899999999999999999988877777777887655555544310 0147999999998322 21112
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC----------
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---------- 422 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---------- 422 (480)
|-..-||++++|||+.+..-.+..+.+ +.++. .+.|++|++||+|+++.+ ......+++..+
T Consensus 74 RGa~vtDIaILVVa~dDGv~pQTiEAI-~hak~-----a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 74 RGASVTDIAILVVAADDGVMPQTIEAI-NHAKA-----AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred cCCccccEEEEEEEccCCcchhHHHHH-HHHHH-----CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhcCCce
Confidence 223558999999999987655665544 34554 479999999999999652 233333444333
Q ss_pred -ceeeecccccCHHHHHHHHHHh
Q 011645 423 -CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 423 -~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+.+.||++++|+.++++.+..-
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHH
Confidence 3478999999999999977643
No 262
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.13 E-value=4.1e-10 Score=120.31 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=90.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------------CCCceeeeccceeccCCCCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL 320 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~ 320 (480)
-..|+++|..++|||||+.+|+..--.+. -..+.|++.....+...
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~--- 83 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC---
Confidence 35799999999999999999975221110 01234444433333322
Q ss_pred CccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCC------hhhHHHHHHHHHhhCCCCCCCC
Q 011645 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERP 394 (480)
Q Consensus 321 ~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~kp 394 (480)
...+.|+||||+.+ +.......+..+|++++|||+..+.- ..+....+..+.. .+.|
T Consensus 84 -----~~~i~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-----~gi~ 146 (446)
T PTZ00141 84 -----KYYFTIIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-----LGVK 146 (446)
T ss_pred -----CeEEEEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-----cCCC
Confidence 23789999999754 33445566778999999999987531 1222333333443 3556
Q ss_pred -EEEEEeCCCCcC---h----HHHHHHHHHHHHhcCc-------eeeecccccCHHH
Q 011645 395 -FIVVLNKIDLPE---A----RDRLQSLTEEILKIGC-------DKVTSETELSSED 436 (480)
Q Consensus 395 -~ivV~NK~Dl~~---~----~e~~~~l~~~l~~~g~-------~~~sa~t~~Gi~~ 436 (480)
+|+++||+|... . ++..+++.+.+...++ .++|+.+++|+.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 679999999532 1 2334445555554444 4778899998853
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.13 E-value=7.1e-10 Score=118.67 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceec---------------cCCCCCC----------ccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTLG----------AEK 324 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v---------------~~~~~~~----------~~~ 324 (480)
..|+++|....|||||+.+|++..... .-.-+.|++.-.... .+..... ...
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 569999999999999999999754311 111122322111100 0000000 001
Q ss_pred cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
+...+.++||||+.+ +....+..+..+|++++|||+..+.+..+....+..+... .-+++|+|+||+|+
T Consensus 115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l----gi~~iIVvlNKiDl 183 (460)
T PTZ00327 115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM----KLKHIIILQNKIDL 183 (460)
T ss_pred ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc----CCCcEEEEEecccc
Confidence 123689999999733 3444556677899999999998642222112222233322 12568999999999
Q ss_pred cChH---HHHHHHHHHHH-----hcCceeeecccccCHHHHHHHHHHhc
Q 011645 405 PEAR---DRLQSLTEEIL-----KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 405 ~~~~---e~~~~l~~~l~-----~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.. +..+++.+.+. ...+.++|+.+++|++.+++.|....
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 7532 22344444443 23566889999999999999998654
No 264
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.12 E-value=9.2e-10 Score=99.66 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=118.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+++|.-++|||++|..|.-....+ .++..|--+...+.++.+. .....+.+.||.|+..+.. .+-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~~---eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQQ---ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCchh---hhhH
Confidence 34579999999999999999997544333 3333333344444444332 1234789999999976521 1222
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH---HhcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l---~~~g~~~~ 426 (480)
.++.-+|..++|+|..++++++..+.|..++..+. +-.+.|+++++||+|+.+..+........+ ++....++
T Consensus 80 ---hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eV 155 (198)
T KOG3883|consen 80 ---HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEV 155 (198)
T ss_pred ---hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEE
Confidence 34567999999999999999999999999999865 345789999999999976544333333333 34566788
Q ss_pred ecccccCHHHHHHHHHHhcCcc
Q 011645 427 TSETELSSEDAVKSLSTEGGEA 448 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~~~ 448 (480)
.+.....+-+.|..|..++...
T Consensus 156 ta~dR~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQP 177 (198)
T ss_pred EeccchhhhhHHHHHHHhccCC
Confidence 9999999999999998887543
No 265
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=8e-10 Score=108.79 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceec-----------cCCC--CCC----------------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL-----------DGDP--TLG---------------- 321 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v-----------~~~~--~~~---------------- 321 (480)
.++.|+++|..++||||+|++|++...........|..|..-.+ .... ...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999864211111122222221111 0000 000
Q ss_pred --cccc-------------CCceEEecCCccccccccc------Cccchhhhhhhc-cCCEEEEecccCCCCChhhHHHH
Q 011645 322 --AEKY-------------SSEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTV 379 (480)
Q Consensus 322 --~~~~-------------~~~~~l~DTPGlie~a~~~------~gl~~~fl~~i~-~ad~ll~VvD~s~~~~~~~~~~l 379 (480)
...+ ...++++||||+...+..+ ..+......+++ ..+++|+|+|+......++...+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0001 1468999999997542111 223344566777 45699999998764333343344
Q ss_pred HHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 380 KEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 380 ~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.+++.. ..+++++|+||+|....
T Consensus 185 a~~ld~-----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP-----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH-----cCCcEEEEEECCCCCCc
Confidence 455553 46899999999998764
No 266
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.1e-10 Score=105.04 Aligned_cols=119 Identities=25% Similarity=0.346 Sum_probs=88.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
+.-.++.++|.-|||||||++.|...+... .. .|++|....+.+... +++.+|..|+.. -.+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hv--PTlHPTSE~l~Ig~m--------~ftt~DLGGH~q-------Arr 79 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HV--PTLHPTSEELSIGGM--------TFTTFDLGGHLQ-------ARR 79 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cC--CCcCCChHHheecCc--------eEEEEccccHHH-------HHH
Confidence 556789999999999999999998765432 22 378887777765543 799999999854 245
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.|..++..+|.++|+||+.+.+.+.+.+.-++.+.. .+.+...|+++..||+|.+.+
T Consensus 80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~-~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLS-DESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHh-HHHHhcCcceeecccccCCCc
Confidence 678889999999999999987655544433332221 234568999999999999865
No 267
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.11 E-value=2.7e-10 Score=109.94 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=92.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccC--CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
+|.|+|.+|+||||++|.|++.+..... ....|........... +..+.|+||||+.+.....+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--------g~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--------GRQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--------TEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec--------ceEEEEEeCCCCCCCcccHHHHHHHH
Confidence 6899999999999999999988764322 1223333333222222 23799999999977543333232222
Q ss_pred hh----hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HH-----HHHHHHHH
Q 011645 352 LR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RL-----QSLTEEIL 419 (480)
Q Consensus 352 l~----~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~-----~~l~~~l~ 419 (480)
.+ .....+++|||++.. ..+.++...+......+.++.. +-+|||++..|...... .+ ..+.+.+.
T Consensus 74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADELEDDSLEDYLKKESNEALQELIE 151 (212)
T ss_dssp HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH-hHhhHHhhhccccccccHHHHHhccCchhHhHHhh
Confidence 22 235579999999998 4555665655555555665433 56899999998765432 12 23445556
Q ss_pred hcCceeeecccc--------cCHHHHHHHHHHh
Q 011645 420 KIGCDKVTSETE--------LSSEDAVKSLSTE 444 (480)
Q Consensus 420 ~~g~~~~sa~t~--------~Gi~~ll~~Ls~~ 444 (480)
..+-..+..... ..+.++++.+...
T Consensus 152 ~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~m 184 (212)
T PF04548_consen 152 KCGGRYHVFNNKTKDKEKDESQVSELLEKIEEM 184 (212)
T ss_dssp HTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEeccccchhhhHHHHHHHHHHHHHH
Confidence 666555543333 4566666555433
No 268
>PRK13351 elongation factor G; Reviewed
Probab=99.10 E-value=4.5e-10 Score=126.12 Aligned_cols=128 Identities=24% Similarity=0.245 Sum_probs=82.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc---cCC---------------CceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
..+.+|+|+|..|+|||||+++|......+ ..+ ...|+......+.+. ...+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~l 77 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--------NHRINL 77 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--------CEEEEE
Confidence 346789999999999999999997532211 110 011222222222211 237899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HH
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e 409 (480)
|||||+.+. .......++.+|++++|+|++.....+... ++..+.. .+.|+++|+||+|+... .+
T Consensus 78 iDtPG~~df-------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiviNK~D~~~~~~~~ 144 (687)
T PRK13351 78 IDTPGHIDF-------TGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADR-----YGIPRLIFINKMDRVGADLFK 144 (687)
T ss_pred EECCCcHHH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEECCCCCCCCHHH
Confidence 999998653 234456678899999999999876555443 3344443 35899999999999864 34
Q ss_pred HHHHHHHHH
Q 011645 410 RLQSLTEEI 418 (480)
Q Consensus 410 ~~~~l~~~l 418 (480)
.++++.+.+
T Consensus 145 ~~~~i~~~l 153 (687)
T PRK13351 145 VLEDIEERF 153 (687)
T ss_pred HHHHHHHHH
Confidence 455555444
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.8e-10 Score=109.59 Aligned_cols=117 Identities=28% Similarity=0.351 Sum_probs=81.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
..|.++|+.++|||+|+-.|...... -.+|++.|+.+++.+.. ....++|.||+.. +...++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs--------~~~~LVD~PGH~r-------lR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGS--------ENVTLVDLPGHSR-------LRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEeecC--------cceEEEeCCCcHH-------HHHHHH
Confidence 47999999999999999999865322 12567889999886553 2579999999843 455555
Q ss_pred hhhc---cCCEEEEecccCCC--CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 353 RHLR---RTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 353 ~~i~---~ad~ll~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++. ++..++||||+..- +..+-.+.+...|..-...-...|+++++||.|+..+
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 5554 79999999998762 2222333344444432111235789999999999765
No 270
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5e-10 Score=99.97 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=107.9
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce--eccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
...+++-.++|..++|||.||..++..+. .++.|.|- -...| .++.... .-++.||||+|+..
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-madcphti-gvefgtriievsgq------kiklqiwdtagqer------- 72 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTI-GVEFGTRIIEVSGQ------KIKLQIWDTAGQER------- 72 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-hhcCCccc-ceecceeEEEecCc------EEEEEEeecccHHH-------
Confidence 34677889999999999999999997543 34444332 11111 1221111 13689999999843
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHhcC--c
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--C 423 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~~g--~ 423 (480)
+..-...+.+.+...++|+|++.+.+...+..|+...+... ..+..++++.||.|+...++. .++.++..++-+ +
T Consensus 73 fravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qrdv~yeeak~faeengl~f 150 (215)
T KOG0097|consen 73 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMF 150 (215)
T ss_pred HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEE
Confidence 33334456678889999999999888888887776665432 123457888899999865432 333444444444 5
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++++++++++++|-+.+.+.
T Consensus 151 le~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 151 LEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred EEecccccCcHHHHHHHHHHHH
Confidence 6889999999999998776554
No 271
>PTZ00099 rab6; Provisional
Probab=99.07 E-value=6.1e-10 Score=104.45 Aligned_cols=111 Identities=12% Similarity=0.055 Sum_probs=80.1
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
++.||||||.... ......+++.||++|+|+|++++.+++....|..++..... ...|+++|+||+|+...
T Consensus 30 ~l~iwDt~G~e~~-------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 30 RLQLWDTAGQERF-------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL 100 (176)
T ss_pred EEEEEECCChHHh-------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 6899999998543 22234567889999999999998888888878777765431 35789999999999642
Q ss_pred HH-HHHHHHHHHHhc--CceeeecccccCHHHHHHHHHHhcCc
Q 011645 408 RD-RLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 408 ~e-~~~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.. ..++........ .+.++|++++.|++++|++|...+..
T Consensus 101 ~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11 111222222233 35689999999999999999987743
No 272
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=9.6e-10 Score=111.81 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=101.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC---CccCCCceee------eccceeccCCCCCCc---------------------
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGDPTLGA--------------------- 322 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~---~ia~~pfTTl------~p~~g~v~~~~~~~~--------------------- 322 (480)
+-|.++|....||||+|+.|+..+. .|++.|.|.. -+..+++.+.....+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 4599999999999999999998763 4566653321 223333333211111
Q ss_pred ----cccCCceEEecCCcccccccccCccchhh----hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC
Q 011645 323 ----EKYSSEATLADLPGLIEGAHLGKGLGRNF----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 394 (480)
Q Consensus 323 ----~~~~~~~~l~DTPGlie~a~~~~gl~~~f----l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp 394 (480)
+....+++|+||||+.++..+....+..| ...+++||.|++++|+...+...+++.+...|+-. +-.
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-----Edk 213 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-----EDK 213 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-----cce
Confidence 01124689999999999876644333333 34468999999999999888888888888888752 356
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHHhcC
Q 011645 395 FIVVLNKIDLPEARDRLQSLTEEILKIG 422 (480)
Q Consensus 395 ~ivV~NK~Dl~~~~e~~~~l~~~l~~~g 422 (480)
+-||+||+|..+.++.+...-..++.++
T Consensus 214 iRVVLNKADqVdtqqLmRVyGALmWslg 241 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQLMRVYGALMWSLG 241 (532)
T ss_pred eEEEeccccccCHHHHHHHHHHHHHhhh
Confidence 8899999999998877776666666653
No 273
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.6e-09 Score=114.82 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=113.1
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCcc---------------CCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia---------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
...+..+++|-+-.-|||||..+|....-.+. -.-+.|+..+...+.+.. ... .-+.++|
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~--ylLNLID 131 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQS--YLLNLID 131 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCc--eEEEeec
Confidence 35667899999999999999999976433221 123555555444443322 011 2588999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~ 411 (480)
|||+.+. +.+..+.+.-|+.+|+|||++.+...+....++..++ .+..+|.|+||+|++.+ +...
T Consensus 132 TPGHvDF-------s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 132 TPGHVDF-------SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred CCCcccc-------cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHHH
Confidence 9999764 4456677888999999999999876777666666666 35678999999999975 2333
Q ss_pred HHHHHHHHhc--CceeeecccccCHHHHHHHHHHhcC
Q 011645 412 QSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 412 ~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
..+.+.+... ....+|++++.+++++++++.++..
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 3344433322 3457899999999999999988874
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.05 E-value=1.8e-09 Score=105.25 Aligned_cols=110 Identities=20% Similarity=0.264 Sum_probs=70.5
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..-|+++|.+|+|||||+++|.+.... ++.....|.+.... ....++.++||||.. ...
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~i~i~~-----~~~~~i~~vDtPg~~----------~~~ 97 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGPITVVT-----GKKRRLTFIECPNDI----------NAM 97 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhccc------CccccccccEEEEe-----cCCceEEEEeCCchH----------HHH
Confidence 346999999999999999999865211 11111122111000 012478999999864 234
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCE-EEEEeCCCCcChH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEAR 408 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~-ivV~NK~Dl~~~~ 408 (480)
+..+..+|++++|+|++......+. .++..+.. .+.|. ++|+||+|+....
T Consensus 98 l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 98 IDIAKVADLVLLLIDASFGFEMETF-EFLNILQV-----HGFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred HHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence 5667889999999999875544443 34455544 24675 4599999997443
No 275
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.04 E-value=9e-11 Score=103.86 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=104.7
Q ss_pred EecCCCCChHHHHHHHhcCCCCccCCCceee--eccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhh
Q 011645 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~ 354 (480)
++|...+|||.||-++.....--.++. .|+ +-.-..++.++ ...++++|||+|+.. +..-...+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fi-stvgid~rnkli~~~~------~kvklqiwdtagqer-------frsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFI-STVGIDFRNKLIDMDD------KKVKLQIWDTAGQER-------FRSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCceecCcee-eeeeeccccceeccCC------cEEEEEEeeccchHH-------HhhhhHhh
Confidence 689999999998866543211111111 111 11111122221 123789999999843 34445567
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeeccc
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSET 430 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~t 430 (480)
.+.+|++++++|+.+..+++..+.|+.|++.|.. ....++++.||||+...+ +.-+.+.+ -..+++.++++++
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~-~y~ipfmetsakt 144 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAE-AYGIPFMETSAKT 144 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHH-HHCCCceeccccc
Confidence 7899999999999999999999999999999975 346789999999996532 12222322 2346677999999
Q ss_pred ccCHHHHHHHHHHhcC
Q 011645 431 ELSSEDAVKSLSTEGG 446 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~~ 446 (480)
+-+++-++-.++++..
T Consensus 145 g~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 145 GFNVDLAFLAIAEELK 160 (192)
T ss_pred cccHhHHHHHHHHHHH
Confidence 9999999999887763
No 276
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.1e-09 Score=112.75 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=109.2
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.+..+-|-+.|+..-||||||.+|-+...+....-+.|.+.--..+.... +..+++.||||+--. .
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaAF-------~ 215 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAAF-------S 215 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHHH-------H
Confidence 35667899999999999999999998887777777888755444444332 258999999998432 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------c
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------I 421 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~ 421 (480)
.+-.|-..-+|++++||-+.+....+..+.+... +. .+.|+||.+||||.+++. .+...+++.. +
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA-k~-----A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~ 287 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHA-KS-----ANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDL 287 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHH-Hh-----cCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHc
Confidence 2222334558999999999987665555544322 21 579999999999998652 2233333322 2
Q ss_pred ----CceeeecccccCHHHHHHHHHHhc
Q 011645 422 ----GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 ----g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++++.++++++.+.+.+..-.
T Consensus 288 GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 288 GGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCceeEEEeecccCCChHHHHHHHHHHH
Confidence 345889999999999988776443
No 277
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.01 E-value=2.1e-09 Score=112.44 Aligned_cols=163 Identities=23% Similarity=0.232 Sum_probs=113.2
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCc---------------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
++.+....++-+-.-|||||-.+|......+ ...-+.|+..+...+.+.... ...| .+.++|
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~-g~~Y--~lnlID 82 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD-GETY--VLNLID 82 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC-CCEE--EEEEcC
Confidence 4556678888888999999999997643222 123366766665555543211 1122 588999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~ 411 (480)
|||+.+. .....|.+..|...|+|||++.+-..+.+......++. +.-+|-|+||+||+.++ ...
T Consensus 83 TPGHVDF-------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------~LeIiPViNKIDLP~Adpervk 149 (603)
T COG0481 83 TPGHVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPAADPERVK 149 (603)
T ss_pred CCCccce-------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc------CcEEEEeeecccCCCCCHHHHH
Confidence 9999775 34456778889999999999998766666666666663 56789999999999763 222
Q ss_pred HHHHHHH--HhcCceeeecccccCHHHHHHHHHHhcCc
Q 011645 412 QSLTEEI--LKIGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 412 ~~l~~~l--~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+++.+.+ .......+|++++.|++++++.+..+...
T Consensus 150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 2222221 11234478999999999999999988744
No 278
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=1.8e-09 Score=105.69 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=95.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCC-CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
||.|+|+.++||||+.+.+...- |.-+.+-..|.++..-.+..... -.+.+||.||+...... .+...--
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-------~~l~iwD~pGq~~~~~~--~~~~~~~ 71 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-------LPLNIWDCPGQDDFMEN--YFNSQRE 71 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-------CEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-------cEEEEEEcCCccccccc--cccccHH
Confidence 68999999999999999998654 33345555666666555532221 26899999999654221 1111112
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHH---HHHhhCCCCCCCCEEEEEeCCCCcChHH-------HHHHHHHHHHhcC
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKE---ELRMYNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEILKIG 422 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~---eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-------~~~~l~~~l~~~g 422 (480)
.-++.++++|||+|+...+..+++..+.. .+..+.| +..+-|.+.|+|+..... ..+.+.+.+...+
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23578999999999996666665554444 4455664 567999999999986532 2233334444444
Q ss_pred -----ceeeecccccCHHHHHHHHHHhcC
Q 011645 423 -----CDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 423 -----~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+..+|+.. +.+-+++..+..++.
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 33556555 577888887777764
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=1.7e-09 Score=106.48 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=69.6
Q ss_pred ceEEecCCccccccccc---CccchhhhhhhccCCEEEEecccCCCCChhhH-HHHHHHHH-hhCCCCCCCCEEEEEeCC
Q 011645 328 EATLADLPGLIEGAHLG---KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~---~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~-~~~~~l~~kp~ivV~NK~ 402 (480)
++.++||||+|+.-.+. .-+... +... ..-+++||+|.........+ ...+.... .|. ...|+|+|+||+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~-lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITET-LASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhh-Hhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 48899999999853321 112222 2221 24689999998763222221 12211111 232 468999999999
Q ss_pred CCcChHH------HHHHHHH-----------------------HHHhcCceeeecccccCHHHHHHHHHHhcCcccc
Q 011645 403 DLPEARD------RLQSLTE-----------------------EILKIGCDKVTSETELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 403 Dl~~~~e------~~~~l~~-----------------------~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
|+.+..- ..+.+++ ....+....+++.++.|.++++..+.+...+...
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 9986421 1111111 1123345578999999999999999877755443
No 280
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.98 E-value=3.2e-09 Score=113.53 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=88.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCcc-----------------C--------------CCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-----------------D--------------YPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-----------------~--------------~pfTTl~p~~g~v~~~~ 318 (480)
|.-..|+++|..++|||||+-+|+...-.+. . .-+.|++.....+...
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~- 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT- 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-
Confidence 3345799999999999999999864221110 0 1123333322222221
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCCh------hhHHHHHHHHHhhCCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~ 392 (480)
...+.++||||+.+. .......+..+|++|+|||+....-. .+.+..+..+.. .+
T Consensus 84 -------~~~i~liDtPGh~df-------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~g 144 (447)
T PLN00043 84 -------KYYCTVIDAPGHRDF-------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LG 144 (447)
T ss_pred -------CEEEEEEECCCHHHH-------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cC
Confidence 236899999998542 33345556789999999999874211 122222222332 24
Q ss_pred C-CEEEEEeCCCCcCh-------HHHHHHHHHHHHhcC-------ceeeecccccCHH
Q 011645 393 R-PFIVVLNKIDLPEA-------RDRLQSLTEEILKIG-------CDKVTSETELSSE 435 (480)
Q Consensus 393 k-p~ivV~NK~Dl~~~-------~e~~~~l~~~l~~~g-------~~~~sa~t~~Gi~ 435 (480)
. ++|+++||+|+... .+..+++.+.+...+ +.++|+.+++++.
T Consensus 145 i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 145 VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 5 47889999998621 123445555666555 4577999998874
No 281
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.5e-10 Score=102.16 Aligned_cols=162 Identities=20% Similarity=0.164 Sum_probs=102.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceee--eccceeccCCCCC---CccccCCceEEecCCcccccccccC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTL---GAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~---~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.+++...+|..++||||+|...+..+.... =.+|+ +-....+-+...- ......-.+++|||+|+... +
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~q--FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF----R 81 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQ--FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF----R 81 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccce--eEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH----H
Confidence 345666789999999999999987653210 01121 1111111111100 00111124789999998543 2
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHHHHHHH-HHh--c
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEE-ILK--I 421 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~~l~~~-l~~--~ 421 (480)
.+.-+| .+.|-..++++|.++..++-..+.|+..|+.+.- .+.| ++++.||+||+..+..-+.-... ..+ +
T Consensus 82 SLTTAF---fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY--cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl 156 (219)
T KOG0081|consen 82 SLTTAF---FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY--CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL 156 (219)
T ss_pred HHHHHH---HHhhccceEEEeccchHHHHHHHHHHHHHHHhhc--cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC
Confidence 233333 4567889999999999888888999998886432 3445 88999999998754433332222 233 4
Q ss_pred CceeeecccccCHHHHHHHHHH
Q 011645 422 GCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
++.++++.++.+++++++.|..
T Consensus 157 PYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHH
Confidence 5668999999999998887653
No 282
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.94 E-value=1.1e-09 Score=107.69 Aligned_cols=112 Identities=23% Similarity=0.313 Sum_probs=56.4
Q ss_pred ceEEecCCcccccccccCccchhhhhhhcc--CCEEEEecccCCCCChhhH-HHHHHHHH-hhCCCCCCCCEEEEEeCCC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~-~~l~~eL~-~~~~~l~~kp~ivV~NK~D 403 (480)
.+.++||||++|--... .....+.+.+.+ .-+++|++|+..-.....+ ..++..+. .+. .+.|+|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 68999999999842211 122233444442 4588999999864432222 22222222 111 3689999999999
Q ss_pred CcChH--HHH-----------------H----HHHHHHHhc----CceeeecccccCHHHHHHHHHH
Q 011645 404 LPEAR--DRL-----------------Q----SLTEEILKI----GCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 404 l~~~~--e~~-----------------~----~l~~~l~~~----g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
+.... ..+ . .+.+.+... .+.+.++++++++.+++..+..
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~ 234 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK 234 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence 98721 111 1 111111111 3457788999999999888754
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.92 E-value=3.3e-09 Score=119.66 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=74.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc----------cCC------CceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
..+.+|+++|..++|||||+++|....-.+ .++ .++|+......+... .... ..++.++|
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~--~~~~--~~~i~liD 92 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE--YEGN--EYLINLID 92 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe--ecCC--ceEEEEEe
Confidence 346789999999999999999997432111 111 122332221111000 0011 23789999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
|||+.+. .......+..+|++|+|+|+......+... ++..+.. .+.|.++|+||+|...
T Consensus 93 TPG~~~f-------~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 93 TPGHVDF-------GGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred CCCcccc-------HHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH-----cCCCEEEEEEChhccc
Confidence 9999652 334567788899999999998754333333 3333332 2578899999999864
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=98.92 E-value=7.4e-09 Score=118.53 Aligned_cols=123 Identities=20% Similarity=0.171 Sum_probs=76.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCcee---------------eeccceeccCCCCC--CccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTT---------------LMPNLGRLDGDPTL--GAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTT---------------l~p~~g~v~~~~~~--~~~~~~~~~~l 331 (480)
..+..|+++|..++|||||+++|......+ ....++| ++.....+.+.... ....-...+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345589999999999999999998643322 1112222 11111111111000 00000125899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+||||+.+. .......+..+|++|+|+|+..+...+.. .++..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f-------~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF-------SSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH-------HHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH-----cCCCEEEEEEChhhh
Confidence 999999653 33356677889999999999986544443 44444543 358999999999987
No 285
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.92 E-value=2.6e-09 Score=101.56 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=109.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCC-CCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~-~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.|+++||...+|||+||-..+.... ...|..|-.+.....+..+ +. .-.+.+|||+|+.+.. .++.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~f-p~~yvPTVFdnys~~v~V~dg~------~v~L~LwDTAGqedYD----rlRp-- 71 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAF-PEEYVPTVFDNYSANVTVDDGK------PVELGLWDTAGQEDYD----RLRP-- 71 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcC-cccccCeEEccceEEEEecCCC------EEEEeeeecCCCcccc----cccc--
Confidence 5899999999999999999886532 2333333333333333332 11 1258899999997652 1221
Q ss_pred hhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH----------------HHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSL 414 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~----------------~~l 414 (480)
+ .+..+|++|++++..++.+++.. ..|..|++.|. .+.|+|+|++|.||..+...+ ..+
T Consensus 72 l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 72 L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 2 45779999999999998887764 56888998887 479999999999998543222 233
Q ss_pred HHHHHhcCceeeecccccCHHHHHHHHHHhcCc
Q 011645 415 TEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 415 ~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+.+....+.+|++.+..|+.+.++........
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 333344457799999999999999987766543
No 286
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=1.1e-09 Score=101.40 Aligned_cols=159 Identities=16% Similarity=0.100 Sum_probs=107.9
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceee--eccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.+...++++++|--++||||+|.+.+..-.. .+|-- |+ +-....+..... ..++.+|||+|..|.
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifT-kdykk-tIgvdflerqi~v~~E------dvr~mlWdtagqeEf----- 82 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYKK-TIGVDFLERQIKVLIE------DVRSMLWDTAGQEEF----- 82 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccc-ccccc-ccchhhhhHHHHhhHH------HHHHHHHHhccchhH-----
Confidence 3456788999999999999999999843110 01110 10 111111111100 125789999998653
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhc
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKI 421 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~ 421 (480)
......+.+.|.+.++|+..++..+++....|.++++. +...+|.++|-||+|+.+.. +..+.+...+. .
T Consensus 83 --DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~---e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~ 156 (246)
T KOG4252|consen 83 --DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQK---ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-K 156 (246)
T ss_pred --HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHH---HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-h
Confidence 23334667889999999999999999999999998886 33579999999999998653 22333333332 3
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+..++++..-++...|..|.++.
T Consensus 157 RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 157 RLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH
Confidence 455678888999999999888765
No 287
>PRK12740 elongation factor G; Reviewed
Probab=98.90 E-value=5.7e-09 Score=116.87 Aligned_cols=120 Identities=25% Similarity=0.257 Sum_probs=75.0
Q ss_pred ecCCCCChHHHHHHHhcCCCCc---cCC---------------CceeeeccceeccCCCCCCccccCCceEEecCCcccc
Q 011645 278 VGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (480)
Q Consensus 278 vG~pNaGKSSLlnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie 339 (480)
+|.+|+|||||+++|......+ ..+ .+.|+......+.+. +..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--------~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--------GHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--------CEEEEEEECCCcHH
Confidence 6999999999999995443222 111 112222222222221 23689999999854
Q ss_pred cccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHH
Q 011645 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE 417 (480)
Q Consensus 340 ~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~ 417 (480)
+...+.+.+..+|++++|+|++......... ++..+.. .++|+++|+||+|+.... +..+.+.+.
T Consensus 73 -------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~NK~D~~~~~~~~~~~~l~~~ 139 (668)
T PRK12740 73 -------FTGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-----YGVPRIIFVNKMDRAGADFFRVLAQLQEK 139 (668)
T ss_pred -------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 2234566778899999999999866554433 3344443 368999999999987542 334444444
Q ss_pred H
Q 011645 418 I 418 (480)
Q Consensus 418 l 418 (480)
+
T Consensus 140 l 140 (668)
T PRK12740 140 L 140 (668)
T ss_pred H
Confidence 3
No 288
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.88 E-value=1.4e-08 Score=104.44 Aligned_cols=99 Identities=9% Similarity=0.078 Sum_probs=64.2
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
..++|+||+|+.... ...+..||++++|++...++ ++..+..... +..-++|+||+|+..
T Consensus 149 ~d~viieT~Gv~qs~----------~~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~-------E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSE----------TAVAGMVDFFLLLQLPGAGD---ELQGIKKGIM-------ELADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccch----------hHHHHhCCEEEEEecCCchH---HHHHHHhhhh-------hhhheEEeehhcccc
Confidence 368999999986431 11355699999998744333 3332222111 233489999999875
Q ss_pred hH---HHHHHHHHHHHh---------cCceeeecccccCHHHHHHHHHHhc
Q 011645 407 AR---DRLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 407 ~~---e~~~~l~~~l~~---------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.. ....++...+.- ..+..+|+.++.|++++++.+....
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 32 233444444432 2355789999999999999998765
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.88 E-value=8.1e-09 Score=118.33 Aligned_cols=122 Identities=20% Similarity=0.117 Sum_probs=76.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCcc-CCCce---------------eeeccceeccCCCCC--------CccccC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYPFT---------------TLMPNLGRLDGDPTL--------GAEKYS 326 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-~~pfT---------------Tl~p~~g~v~~~~~~--------~~~~~~ 326 (480)
.+..|+|+|..++|||||+.+|+.....+. ...++ |+......+.+.... ....-.
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 466899999999999999999986543321 11111 222111112111000 000001
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
..+.++||||+.+. .......+..+|.+|+|||+..+........| ..+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~dF-------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHH-------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH-----CCCCEEEEEECCccc
Confidence 25789999999663 33345667889999999999986554554444 33433 368999999999987
No 290
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.1e-09 Score=94.04 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=98.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|.++|.-||||+|++-++.--+. +...| |...+...+.+.. -++.+||.-|.-. +.--|..
T Consensus 20 rililgldGaGkttIlyrlqvgev-vttkP--tigfnve~v~yKN--------Lk~~vwdLggqtS-------irPyWRc 81 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEV-VTTKP--TIGFNVETVPYKN--------LKFQVWDLGGQTS-------IRPYWRC 81 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCcc-cccCC--CCCcCcccccccc--------ccceeeEccCccc-------ccHHHHH
Confidence 578899999999999988864321 11222 2223333444432 2789999999743 5556778
Q ss_pred hhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHH----HHHHh--cCceee
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT----EEILK--IGCDKV 426 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~----~~l~~--~g~~~~ 426 (480)
+.+.+|.+|||||.++.+....... +...|. .+++....+++++||+|........+.+. ..+++ ..+...
T Consensus 82 Yy~dt~avIyVVDssd~dris~a~~el~~mL~--E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~t 159 (182)
T KOG0072|consen 82 YYADTDAVIYVVDSSDRDRISIAGVELYSMLQ--EEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKT 159 (182)
T ss_pred HhcccceEEEEEeccchhhhhhhHHHHHHHhc--cHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEee
Confidence 8999999999999998765433221 111121 12344567899999999876533222221 12222 356688
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.+++|++.+++||..-+
T Consensus 160 SA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 160 SAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred ccccccCCcHHHHHHHHHH
Confidence 9999999999999997544
No 291
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.86 E-value=2.8e-09 Score=99.90 Aligned_cols=57 Identities=32% Similarity=0.558 Sum_probs=47.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
+...+|+++|.||||||||+|+|++.+. .++++|++|...+...+. ..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence 3457899999999999999999999876 669999999876655432 36899999996
No 292
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=7.9e-09 Score=104.94 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=62.9
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
..++|+||||.... ....++.+|.+++|.+.... +++..+...+ .++|.++|+||+|+..
T Consensus 127 ~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-------~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 127 YDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGTG---DDLQGIKAGL-------MEIADIYVVNKADGEG 186 (300)
T ss_pred CCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCcc---HHHHHHHHHH-------hhhccEEEEEcccccc
Confidence 36899999997421 22345668888888654422 3333333222 3588899999999986
Q ss_pred hHHHH---HHH----HHHHHh-----cCceeeecccccCHHHHHHHHHHhc
Q 011645 407 ARDRL---QSL----TEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 407 ~~e~~---~~l----~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.. ..+ ...... ..+..+|+.+++|++++++++....
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 54211 011 111111 1256889999999999999998764
No 293
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.85 E-value=8.8e-09 Score=112.58 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=79.2
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCC-CccCC-Cceeeecc-ceeccCCCCCCccccCCceEEecCCcccccccc--
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADY-PFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-- 343 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~-pfTTl~p~-~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-- 343 (480)
|..-.+|+|+|.+|+|||||+|+|++.+. .+..+ +.||.... .+.+. +..+.|+||||+.+....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id----------G~~L~VIDTPGL~dt~~dq~ 184 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ----------GVKIRVIDTPGLKSSASDQS 184 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC----------CceEEEEECCCCCccccchH
Confidence 44456799999999999999999999875 33443 55554321 12221 237999999999875321
Q ss_pred -cCccchhhhhhhc--cCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 344 -GKGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 344 -~~gl~~~fl~~i~--~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
++.+.....+.+. .+|++|||+..+.... .++...+...-..|.+..+ +-+|||++..|...
T Consensus 185 ~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw-k~tIVVFThgD~lp 250 (763)
T TIGR00993 185 KNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW-FNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH-cCEEEEEeCCccCC
Confidence 1223333333333 4799999987753222 2444444433344554433 56899999999774
No 294
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.81 E-value=7.5e-09 Score=102.04 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=66.6
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++|+.|-|. +..=..-..-||.+++|+-....+..+..+.=.-|+. =++|+||+|++.+
T Consensus 123 D~IiiETVGv----------GQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia----------Di~vVNKaD~~gA 182 (266)
T PF03308_consen 123 DVIIIETVGV----------GQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA----------DIFVVNKADRPGA 182 (266)
T ss_dssp SEEEEEEESS----------STHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHHH
T ss_pred CEEEEeCCCC----------CccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc----------cEEEEeCCChHHH
Confidence 4566666654 4433455567999999998888777666554333333 2999999998877
Q ss_pred HHHHHHHHHHHHhc---------CceeeecccccCHHHHHHHHHHhc
Q 011645 408 RDRLQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 408 ~e~~~~l~~~l~~~---------g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+....++...+.-. .+..+++.+++|++++++.+.++.
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 77677777666422 334678899999999999988765
No 295
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.4e-08 Score=103.57 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=86.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------------CCCceeeeccceeccCCCCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL 320 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~ 320 (480)
-..++++|++.+|||||+-+|.-.--.+. -+-+.|.+...-.++.+
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--- 83 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--- 83 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC---
Confidence 35789999999999999999964321110 01123333322222222
Q ss_pred CccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC------ChhhHHHHHHHHHhhCCCCCCCC
Q 011645 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP 394 (480)
Q Consensus 321 ~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kp 394 (480)
. ..++|+|+||+.+. ......-+..||+.++|||+...+ ...+.+...- |..+. --..
T Consensus 84 ---k--~~~tIiDaPGHrdF-------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tl---Gi~~ 147 (428)
T COG5256 84 ---K--YNFTIIDAPGHRDF-------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTL---GIKQ 147 (428)
T ss_pred ---C--ceEEEeeCCchHHH-------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhc---CCce
Confidence 1 26999999997542 223334457799999999999763 2122222111 22211 2356
Q ss_pred EEEEEeCCCCcCh-HHHHHHHHHHHH----hcC-------ceeeecccccCHHHH
Q 011645 395 FIVVLNKIDLPEA-RDRLQSLTEEIL----KIG-------CDKVTSETELSSEDA 437 (480)
Q Consensus 395 ~ivV~NK~Dl~~~-~e~~~~l~~~l~----~~g-------~~~~sa~t~~Gi~~l 437 (480)
+||++||||+.+. +++++++...++ .+| +.++|+..++++.+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 8999999999853 455555554443 233 446777777766543
No 296
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=6.9e-09 Score=94.95 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=43.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
..|+++|.||||||||+|+|.+.+. .++++|+||.......+ ...+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence 4789999999999999999998765 55899999987654332 135899999996
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.78 E-value=2.2e-08 Score=113.28 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=74.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC-CCc---------------eeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
..+..|+++|..++|||||+.+|....-.+.. ..+ +|+......+.+.. ... +..+.++|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~~--~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--EGK--EYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe--cCC--cEEEEEEc
Confidence 45668999999999999999999754322211 111 12222211111100 000 23688999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
|||+.+. .....+.+..+|++|+|+|+......+....| ..+.. .+.|.|+++||+|+.
T Consensus 94 tPG~~df-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCCccCh-------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH-----cCCCeEEEEECchhh
Confidence 9999653 33456677889999999999876444443433 33332 246789999999976
No 298
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.77 E-value=5.7e-08 Score=112.32 Aligned_cols=146 Identities=20% Similarity=0.148 Sum_probs=89.0
Q ss_pred ChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC-------cccc---CCceEEecCCcccccccccCccchhhhh
Q 011645 284 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKY---SSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 284 GKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~-------~~~~---~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|||||.+|.+..+.-...-+.|.+.-...+..+.... ...+ ...+++|||||+... .....+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~lr~~ 545 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TSLRKR 545 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HHHHHh
Confidence 39999999998887666666777654333333221100 0000 135899999997432 111123
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh-----------------HHHHHHHH-
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----------------RDRLQSLT- 415 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-----------------~e~~~~l~- 415 (480)
....+|++++|+|+++....+..+.+ ..+.. .+.|+++|+||+|+... +....++.
T Consensus 546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 35669999999999875444444433 34443 35899999999998531 11112221
Q ss_pred ------HHHHhc-----------------CceeeecccccCHHHHHHHHH
Q 011645 416 ------EEILKI-----------------GCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 416 ------~~l~~~-----------------g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
..+... .+.++|+.+++|+++++..+.
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 112222 344689999999999998875
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.76 E-value=4.5e-08 Score=86.17 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=92.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.++++||..++|||||+++|-+..... -.|. .+++. .=..+||||..- +++.+-++.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQ-----Ave~~----------d~~~IDTPGEy~---~~~~~Y~aL~ 59 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQ-----AVEFN----------DKGDIDTPGEYF---EHPRWYHALI 59 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----cccc-----eeecc----------CccccCCchhhh---hhhHHHHHHH
Confidence 478999999999999999999875321 0111 12221 123589999632 2233444455
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---Cceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa~ 429 (480)
-....+|++++|-.+.++.+.-.-. +. ....+|+|-|++|+|+++. +.++..++.+... .+...++.
T Consensus 60 tt~~dadvi~~v~~and~~s~f~p~--------f~-~~~~k~vIgvVTK~DLaed-~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFPPG--------FL-DIGVKKVIGVVTKADLAED-ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred HHhhccceeeeeecccCccccCCcc--------cc-cccccceEEEEecccccch-HhHHHHHHHHHHcCCcceEEEecc
Confidence 5668899999999888753211100 00 1235789999999999963 3345555555544 56678999
Q ss_pred cccCHHHHHHHHHHh
Q 011645 430 TELSSEDAVKSLSTE 444 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~ 444 (480)
.+.|++++++.|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999998644
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.71 E-value=2.3e-08 Score=103.93 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=83.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-----CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-----DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-----~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.-.+|||+|.+|+|||||||+|-+-.. +.....-||..+........ ..+++||+||+......
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~---------pnv~lWDlPG~gt~~f~-- 102 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF---------PNVTLWDLPGIGTPNFP-- 102 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS----
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC---------CCCeEEeCCCCCCCCCC--
Confidence 446899999999999999999976321 11222345665554443211 36999999998543211
Q ss_pred ccchhhhh--hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc--C----------hHHHH
Q 011645 346 GLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP--E----------ARDRL 411 (480)
Q Consensus 346 gl~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~--~----------~~e~~ 411 (480)
...++. .+.+.|.+|+|.+.. .+..+.. |..+++. .++|+.+|.+|+|.. . .++.+
T Consensus 103 --~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~-La~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L 172 (376)
T PF05049_consen 103 --PEEYLKEVKFYRYDFFIIISSER--FTENDVQ-LAKEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL 172 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEESSS----HHHHH-HHHHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred --HHHHHHHccccccCEEEEEeCCC--CchhhHH-HHHHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence 122333 256789877776643 4445544 4566766 369999999999951 1 12233
Q ss_pred HHHH----HHHHhcCcee-----eec--ccccCHHHHHHHHHHhcCccc
Q 011645 412 QSLT----EEILKIGCDK-----VTS--ETELSSEDAVKSLSTEGGEAD 449 (480)
Q Consensus 412 ~~l~----~~l~~~g~~~-----~sa--~t~~Gi~~ll~~Ls~~~~~~~ 449 (480)
+.++ +.+++.++.. +|. -..-.+..+.+.|...+..+.
T Consensus 173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 4433 3445545432 222 122357777777776665543
No 301
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=1.4e-08 Score=104.35 Aligned_cols=59 Identities=37% Similarity=0.451 Sum_probs=49.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
...+|++||.||||||||||+|.+.+. .++++|++|...+...+. ..+.++||||++-.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCC
Confidence 346799999999999999999999887 559999999987766553 36899999999764
No 302
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=1.9e-08 Score=94.92 Aligned_cols=54 Identities=37% Similarity=0.393 Sum_probs=44.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC---------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~---------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
..++|+|.||||||||+|+|.+.. +.++..|+||+++....+. ..+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-----------NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-----------CCCEEEeCcCC
Confidence 469999999999999999998743 3557899999998776653 25799999996
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.68 E-value=9.6e-08 Score=96.30 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=73.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccC--CCc--------eeeeccceeccCCCCCCccccCCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YPF--------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~--~pf--------TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~ 342 (480)
++|.++|.+|+|||||||.|.+....... ++. +++......+... ...-.+.|+||||+.+.-.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~ 78 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID 78 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence 57999999999999999999987543221 111 1122221222111 1123689999999854211
Q ss_pred cc-------Cccchhhhhhh-------------ccCCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 343 LG-------KGLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 343 ~~-------~gl~~~fl~~i-------------~~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
.. .-+...|..++ .|.|++||+++++.. -...+++ .+.+|.. ..++|-|+.|
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~------~vNvIPvIaK 151 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK------RVNVIPVIAK 151 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT------TSEEEEEEST
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc------cccEEeEEec
Confidence 10 00111111111 367999999998763 3334444 3344542 4779999999
Q ss_pred CCCcChHHH---HHHHHHHHHhcCcee
Q 011645 402 IDLPEARDR---LQSLTEEILKIGCDK 425 (480)
Q Consensus 402 ~Dl~~~~e~---~~~l~~~l~~~g~~~ 425 (480)
+|.....|. -..+.+.+...++..
T Consensus 152 aD~lt~~el~~~k~~i~~~l~~~~I~~ 178 (281)
T PF00735_consen 152 ADTLTPEELQAFKQRIREDLEENNIKI 178 (281)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHTT--S
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcee
Confidence 999876443 223444455555543
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.67 E-value=8.4e-08 Score=102.75 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=103.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC--CccC-CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP--DIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~--~ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
+.-.+|+|+|..|+||||||-+|...+- .|-+ .|-+|+ | ..+. +.. ....++||+--.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-P--advt------Pe~--vpt~ivD~ss~~~------- 68 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-P--ADVT------PEN--VPTSIVDTSSDSD------- 68 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-C--CccC------cCc--CceEEEecccccc-------
Confidence 3446899999999999999999998752 2211 111221 2 0111 111 2478999974322
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-----HHHHHHHHHHh
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILK 420 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-----~~~~l~~~l~~ 420 (480)
-.......+++||++++|++.+++.+.+.+.. |+-.++....+..+.|+|+|.||+|...... .+..+...+.+
T Consensus 69 ~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E 148 (625)
T KOG1707|consen 69 DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE 148 (625)
T ss_pred hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH
Confidence 12233567899999999999998777766543 5556665443457899999999999875421 24445555555
Q ss_pred cC-ceeeecccccCHHHHHHHHHHh
Q 011645 421 IG-CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 421 ~g-~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+. ..+|++.+...+.+++.-....
T Consensus 149 iEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 149 IETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred HHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 43 4588999999999998765433
No 305
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.64 E-value=4e-08 Score=99.18 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=49.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a 341 (480)
...+|+|+|.||||||||+|+|++.+. .+++.|++|.......+ ...+.++||||+....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-----------GKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-----------CCcEEEEECCCcCCCC
Confidence 456899999999999999999999876 67999999998764333 1368999999997653
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.64 E-value=9.1e-08 Score=95.77 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=65.3
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++|+.|-|. ++.=..-..-+|.+++|.=....+..+-++.=.-|+ -=|+|+||.|+..+
T Consensus 145 DvIIVETVGv----------GQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi----------aDi~vINKaD~~~A 204 (323)
T COG1703 145 DVIIVETVGV----------GQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI----------ADIIVINKADRKGA 204 (323)
T ss_pred CEEEEEecCC----------CcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh----------hheeeEeccChhhH
Confidence 4566666654 333334455689999998777776555544332222 23999999998877
Q ss_pred HHHHHHHHHHHHhc-------C----ceeeecccccCHHHHHHHHHHhcC
Q 011645 408 RDRLQSLTEEILKI-------G----CDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 408 ~e~~~~l~~~l~~~-------g----~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+....++...++.. + +..+++..++|+.++++.+.++..
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 65555555444322 2 336788999999999999987753
No 307
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=4.5e-08 Score=89.46 Aligned_cols=56 Identities=32% Similarity=0.534 Sum_probs=46.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
...+|+++|.||+|||||+|+|++... .+++.++||.+.....+. ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence 456799999999999999999998764 568889999988765442 36899999996
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.1e-07 Score=103.88 Aligned_cols=131 Identities=25% Similarity=0.218 Sum_probs=85.1
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCc---cCCC---------------ceeeeccceeccCCCCCCccccCCceE
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~p---------------fTTl~p~~g~v~~~~~~~~~~~~~~~~ 330 (480)
+..+..|+++++-.+|||||..+|.-..-.+ ++.. +.|+......+.... ...+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------~~~iN 79 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------DYRIN 79 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-------ceEEE
Confidence 4466789999999999999999997543322 2211 112211111111110 13799
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--H
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--R 408 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~ 408 (480)
++||||+++. .....+.++-+|..++|+|+......+... ++.....| +.|.++++||+|...+ .
T Consensus 80 lIDTPGHVDF-------t~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~-----~vp~i~fiNKmDR~~a~~~ 146 (697)
T COG0480 80 LIDTPGHVDF-------TIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKY-----GVPRILFVNKMDRLGADFY 146 (697)
T ss_pred EeCCCCcccc-------HHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHHhhc-----CCCeEEEEECccccccChh
Confidence 9999999874 445667778899999999999865444434 44444443 5899999999998764 2
Q ss_pred HHHHHHHHHHH
Q 011645 409 DRLQSLTEEIL 419 (480)
Q Consensus 409 e~~~~l~~~l~ 419 (480)
...+++...+.
T Consensus 147 ~~~~~l~~~l~ 157 (697)
T COG0480 147 LVVEQLKERLG 157 (697)
T ss_pred hhHHHHHHHhC
Confidence 33444554443
No 309
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.60 E-value=6.5e-08 Score=100.81 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=58.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
.+|.|||.+|||||||+|+|.+.. ..++.+|+||+......+. ..+.++||||+........-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~~ 223 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAHY 223 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhhh
Confidence 589999999999999999999753 2558899999987655431 25789999999864322111
Q ss_pred cchhhhhhh---ccCCEEEEecccCC
Q 011645 347 LGRNFLRHL---RRTRLLVHVIDAAA 369 (480)
Q Consensus 347 l~~~fl~~i---~~ad~ll~VvD~s~ 369 (480)
+....++.+ .+.....|.+|...
T Consensus 224 l~~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 224 LDKKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred cCHHHHhhcCCCCccCceEEEeCCCC
Confidence 222222222 34566777777654
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.60 E-value=3.1e-07 Score=88.16 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=84.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC---CC--c-cCCCceeeeccc----e----eccCCC--CCC----------ccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK---PD--I-ADYPFTTLMPNL----G----RLDGDP--TLG----------AEK 324 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~---~~--i-a~~pfTTl~p~~----g----~v~~~~--~~~----------~~~ 324 (480)
.+..|+|+|++|||||||++.|.... .+ + ....+.+.+... + .+.... ... ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46779999999999999999997541 11 1 111111221110 0 000000 000 000
Q ss_pred cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
....+++++|.|...... .+ . ...+..+.|+|+...+.. +..... ...+|.++|+||+|+
T Consensus 101 ~~~d~IiIEt~G~l~~~~-------~~-~--~~~~~~i~Vvd~~~~d~~-----~~~~~~-----~~~~a~iiv~NK~Dl 160 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA-------DF-D--LGEHMRVVLLSVTEGDDK-----PLKYPG-----MFKEADLIVINKADL 160 (207)
T ss_pred CCCCEEEEecCCCcCCCc-------cc-c--cccCeEEEEEecCcccch-----hhhhHh-----HHhhCCEEEEEHHHc
Confidence 023678888888322110 11 1 123555678888754321 111111 124788999999999
Q ss_pred cChH-HHHHHHHHHHHh----cCceeeecccccCHHHHHHHHHHh
Q 011645 405 PEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 405 ~~~~-e~~~~l~~~l~~----~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.... .....+.+.+.. ..+..+++.++.|++++++++...
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 161 AEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred cccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 7531 223334433433 457789999999999999998753
No 311
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.59 E-value=1.1e-08 Score=95.62 Aligned_cols=177 Identities=15% Similarity=0.093 Sum_probs=116.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+.++.++|.-+|||+|++.+.........-.+-.-.+-.+-++..++. -.-++.+||+.|+.. ++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~-----t~vRlqLwdIagQer-------fg~m 91 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDK-----TIVRLQLWDIAGQER-------FGNM 91 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChH-----HHHHHHHhcchhhhh-------hcce
Confidence 4568899999999999999998754321110000011222223332211 012578999999843 3444
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhC--CCCCCCCEEEEEeCCCCcChH--HHHHHHHHHHHh---cCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILK---IGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~l~~---~g~ 423 (480)
..-+...+++.++|+|++...+++....|.++|..-. +.-...|+++.+||||..... +.-..+.+...+ .+|
T Consensus 92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gw 171 (229)
T KOG4423|consen 92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGW 171 (229)
T ss_pred EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccce
Confidence 4445678999999999999999999999999887422 222347899999999987532 111222222233 367
Q ss_pred eeeecccccCHHHHHHHHHHhcCccccccccccccc
Q 011645 424 DKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKD 459 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~~~~~~~~~~~~~~d 459 (480)
.+++++.+.+++++-..|.++...++..+...+..+
T Consensus 172 tets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~ 207 (229)
T KOG4423|consen 172 TETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVD 207 (229)
T ss_pred eeeccccccChhHHHHHHHHHHHhhccCCccccccc
Confidence 899999999999999999999877765554444433
No 312
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.58 E-value=5.9e-08 Score=97.39 Aligned_cols=59 Identities=29% Similarity=0.380 Sum_probs=48.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
...+|+++|.||+|||||+|+|++.+. .+++.|++|..++...+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-----------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-----------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-----------CCEEEEECCCcccC
Confidence 346899999999999999999998764 668999999887644431 36899999999654
No 313
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.5e-07 Score=99.93 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=98.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC-------Ccc--cc-CCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL-------GAE--KY-SSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~-------~~~--~~-~~~~~l~DTPGlie~a~ 342 (480)
+=++++|+..+|||-||..|.+..+.-+.+.++|...-.-.+...... ... .+ -..+.++||||+....
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt- 554 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT- 554 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh-
Confidence 458899999999999999999887766777777753221111111000 000 01 1358899999975432
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh---------------
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--------------- 407 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--------------- 407 (480)
..-.+-..-||++|+|||+..+.-.+.++.+ +.|+. .+.||||++||+|.+-.
T Consensus 555 ------nlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 555 ------NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred ------hhhhccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 1112234569999999999986444444443 33443 46899999999997521
Q ss_pred ---------HHHHHHHHHHHHhcC-----------------ceeeecccccCHHHHHHHHHH
Q 011645 408 ---------RDRLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 408 ---------~e~~~~l~~~l~~~g-----------------~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.+++..+...|...| +.++++.+++|+.+++.+|.+
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 112222222333222 237799999999999988764
No 314
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.58 E-value=4.7e-07 Score=94.93 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=96.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc------cC----------CCceeeeccceeccCCCCCCccccCCceEEecC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI------AD----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i------a~----------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DT 334 (480)
.+..|++|-+..-|||||+.+|..+.-.. +. .-+.|+-..--.+.+.. .++.|+||
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--------~~INIvDT 75 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--------TRINIVDT 75 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--------eEEEEecC
Confidence 34578999999999999999998753211 10 11233222111222221 37999999
Q ss_pred CcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHHH
Q 011645 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQ 412 (480)
Q Consensus 335 PGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~~ 412 (480)
||+-+ ++-..-|-+.-.|.+|++||+....-.+.--.+.+.|.. +.+-|||+||+|.+.+ .+..+
T Consensus 76 PGHAD-------FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd 142 (603)
T COG1217 76 PGHAD-------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVD 142 (603)
T ss_pred CCcCC-------ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHH
Confidence 99854 444556667778999999999986444444456666663 4445888999999875 34555
Q ss_pred HHHHHHHhcC-------ce--eeec----------ccccCHHHHHHHHHHhcC
Q 011645 413 SLTEEILKIG-------CD--KVTS----------ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 413 ~l~~~l~~~g-------~~--~~sa----------~t~~Gi~~ll~~Ls~~~~ 446 (480)
+..+.+-+++ ++ +.|+ .....+.-+|+.+.++..
T Consensus 143 ~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 143 EVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred HHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 5555554332 22 2232 233457778888777664
No 315
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.6e-07 Score=89.62 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=94.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC--Cc-----cCCCceeeeccceeccCCC--CC-CccccCCceEEecCCccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP--DI-----ADYPFTTLMPNLGRLDGDP--TL-GAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~--~i-----a~~pfTTl~p~~g~v~~~~--~~-~~~~~~~~~~l~DTPGlie~a~ 342 (480)
..++++|...+|||||.++|+.-.. +. +...+.|+|--.-.+.... .+ .... -+++++|+||+-
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~--lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQ--LQFTLVDCPGHA---- 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCcccc--ceeEEEeCCCcH----
Confidence 5799999999999999999975322 11 2223344443222221110 00 0111 268999999982
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCCcCh---HHHHHHHHH--
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRLQSLTE-- 416 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~---~e~~~~l~~-- 416 (480)
++-+..+....-.|+.++|||+......+..+. +..++. -+..+||+||+|+... ...+++...
T Consensus 82 ---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-------c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 82 ---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-------CKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred ---HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-------ccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 333444444455799999999987543333222 222222 3567999999997754 223333333
Q ss_pred --HHHhc------Cceeeecccc----cCHHHHHHHHHHhcCc
Q 011645 417 --EILKI------GCDKVTSETE----LSSEDAVKSLSTEGGE 447 (480)
Q Consensus 417 --~l~~~------g~~~~sa~t~----~Gi~~ll~~Ls~~~~~ 447 (480)
-++.. ++.++++..+ +++.++.+.|.+...+
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 33333 3457788888 7888888888766544
No 316
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.54 E-value=9.8e-08 Score=85.92 Aligned_cols=54 Identities=39% Similarity=0.545 Sum_probs=43.6
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 338 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGli 338 (480)
+++++|.||+|||||+|+|.+.+. .++..+++|.+.....+. ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-----------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-----------CCEEEEECCCcC
Confidence 799999999999999999998765 567788888775543331 268999999984
No 317
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=5.8e-07 Score=90.56 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=103.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-----------Cc-cCCCceeeec--cce-----eccC--CCCCCccccCCceEE
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-----------DI-ADYPFTTLMP--NLG-----RLDG--DPTLGAEKYSSEATL 331 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-----------~i-a~~pfTTl~p--~~g-----~v~~--~~~~~~~~~~~~~~l 331 (480)
..|++||+..-|||||..+|++-.. .| -.|+-+++.. ..+ .... ...-....+.+.+.+
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 4799999999999999999988421 01 1122222110 000 0000 000001123357899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL 411 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~ 411 (480)
+|.||+. -|....|.-..--|..|+||.+..+-|..+-+.-+-.|+... -+.+|+|-||+|+...++.+
T Consensus 91 VDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecHHHHH
Confidence 9999983 233333444444689999999998766555444444455422 36799999999999765544
Q ss_pred HH---HHHHHH-----hcCceeeecccccCHHHHHHHHHHhcCcc
Q 011645 412 QS---LTEEIL-----KIGCDKVTSETELSSEDAVKSLSTEGGEA 448 (480)
Q Consensus 412 ~~---l~~~l~-----~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~~ 448 (480)
+. ++++++ +..+.++|+..+.+++.+++.+.+.....
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 44 444432 23667899999999999999998777543
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=5.3e-07 Score=87.57 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=81.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc--------cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i--------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
+.|.+||..+.|||||+|.|..++..- .++|-||..-...++-.+. ...-+++++||||+.+.-...
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~-----gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK-----GVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec-----ceEEEEEEecCCCcccccCcc
Confidence 579999999999999999997654311 2456565433222221111 112368999999986532211
Q ss_pred C-------ccchh---hh---------hhh--ccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 345 K-------GLGRN---FL---------RHL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 345 ~-------gl~~~---fl---------~~i--~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
. -+..+ +| ++| -|.+++||.+..+.... .-+++.+ +.|.. -..++-|+-|+
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl-krLt~------vvNvvPVIaka 194 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL-KRLTE------VVNVVPVIAKA 194 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHH-HHHhh------hheeeeeEeec
Confidence 0 01111 11 223 25788999999887432 1233322 22221 24578899999
Q ss_pred CCcChHH---HHHHHHHHHHhcCceeee
Q 011645 403 DLPEARD---RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 403 Dl~~~~e---~~~~l~~~l~~~g~~~~s 427 (480)
|.+.-+| .-+.+++.+...++...+
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 9776443 334455666666665443
No 319
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.49 E-value=8.4e-08 Score=101.51 Aligned_cols=60 Identities=33% Similarity=0.436 Sum_probs=50.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
+....||+||+|||||||+||+|.+.+. .++..|+-|.+.+...+. ..+.++|+||++-.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----------~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----------PSVCLCDCPGLVFP 372 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----------CCceecCCCCcccc
Confidence 4457899999999999999999998875 789999999887766553 46899999999754
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.2e-07 Score=92.64 Aligned_cols=130 Identities=23% Similarity=0.283 Sum_probs=83.8
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCc--c-------CCCcee-------------eeccceeccCCCCCCcccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI--A-------DYPFTT-------------LMPNLGRLDGDPTLGAEKY 325 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a-------~~pfTT-------------l~p~~g~v~~~~~~~~~~~ 325 (480)
|+......+||-+|.||||||...|.----+| + .--++| +...+=.++|.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-------- 79 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-------- 79 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--------
Confidence 44445568999999999999999986322222 0 111122 11111122222
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+..+.|.||||+.+ +...+.|.+-.+|..|+|||+..+--.+.. .|.+..+. .+.|++-.+||+|..
T Consensus 80 ~~~iNLLDTPGHeD-------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrl-----R~iPI~TFiNKlDR~ 146 (528)
T COG4108 80 DCLVNLLDTPGHED-------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRL-----RDIPIFTFINKLDRE 146 (528)
T ss_pred CeEEeccCCCCccc-------cchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhh-----cCCceEEEeeccccc
Confidence 23688999999954 556778899999999999999986543333 34455543 579999999999987
Q ss_pred Ch--HHHHHHHHHHH
Q 011645 406 EA--RDRLQSLTEEI 418 (480)
Q Consensus 406 ~~--~e~~~~l~~~l 418 (480)
.. -|.+.++.+.+
T Consensus 147 ~rdP~ELLdEiE~~L 161 (528)
T COG4108 147 GRDPLELLDEIEEEL 161 (528)
T ss_pred cCChHHHHHHHHHHh
Confidence 43 34455555444
No 321
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.47 E-value=2.3e-07 Score=91.94 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=93.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc---ccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA---HLG 344 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a---~~~ 344 (480)
..++++++|..|+|||||||.++..+... ...++-|...+...+ +..+.++|.||+-... ...
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~~ 203 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFELP 203 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccCc
Confidence 44779999999999999999999776422 224555554443333 3579999999953210 001
Q ss_pred Cc---cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-----HHHHHHH
Q 011645 345 KG---LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTE 416 (480)
Q Consensus 345 ~g---l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-----~~~~l~~ 416 (480)
+. +...++-.-+.---+++++|++.+....+...+ +.+.+ .+.|+.+|+||||....-. ....+..
T Consensus 204 ~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i-~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 204 ADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEI-AWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred chHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHH-HHHhh-----cCCCeEEeeehhhhhhhccccccCcccccee
Confidence 11 222222222233445677898876554454433 23333 4699999999999764211 1111111
Q ss_pred HH---------HhcCceeeecccccCHHHHHHHHHH
Q 011645 417 EI---------LKIGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 417 ~l---------~~~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.+ ..+.|..+++.+..|+++++-.+++
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 11 2345667888999999988877653
No 322
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=1.5e-07 Score=98.23 Aligned_cols=56 Identities=39% Similarity=0.458 Sum_probs=44.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie 339 (480)
.++.+||.||||||||||+|.... ..++.+|+||++.....+. ....++||||++.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCccc
Confidence 479999999999999999998532 2358899999987654442 2468999999974
No 323
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.3e-06 Score=89.57 Aligned_cols=152 Identities=20% Similarity=0.129 Sum_probs=105.6
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-|+..|.---|||||+.++++....+ ...-++|.+-......... ..+.++|.||+.+ +-..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--------~~~~fIDvpgh~~-------~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--------GVMGFIDVPGHPD-------FISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--------CceEEeeCCCcHH-------HHHH
Confidence 37888999999999999999876433 2345788877666655442 2689999999854 3344
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH-----HhcCcee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKIGCDK 425 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l-----~~~g~~~ 425 (480)
.+..+.-.|..++|||+.+.-..+..+.+ ..|..+. -+..++|+||+|..+.....+.+.+.+ ....+..
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL-~iLdllg----i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHL-LILDLLG----IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHH-HHHHhcC----CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 45566778999999999776555554433 3455432 244699999999987543222233322 2345678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.+++|++++-+.|..-.
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccCCCHHHHHHHHHHhh
Confidence 89999999999999887555
No 324
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.44 E-value=1.9e-06 Score=82.60 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=58.8
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
..++++|.|.. +...+...+ +|.++.|+|+...+.... ..... ....-++|+||+|+.+.
T Consensus 93 D~iiIEt~G~~--------l~~~~~~~l--~~~~i~vvD~~~~~~~~~--~~~~q--------i~~ad~~~~~k~d~~~~ 152 (199)
T TIGR00101 93 EMVFIESGGDN--------LSATFSPEL--ADLTIFVIDVAAGDKIPR--KGGPG--------ITRSDLLVINKIDLAPM 152 (199)
T ss_pred CEEEEECCCCC--------cccccchhh--hCcEEEEEEcchhhhhhh--hhHhH--------hhhccEEEEEhhhcccc
Confidence 46677887741 111221222 577999999986543211 00111 12234899999999742
Q ss_pred -HHHHHHHHHHHH----hcCceeeecccccCHHHHHHHHHHhc
Q 011645 408 -RDRLQSLTEEIL----KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 408 -~e~~~~l~~~l~----~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
....+.+.+.+. ...+.++++++++|++++++++.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 122333333333 34677999999999999999997654
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.41 E-value=4.3e-06 Score=85.88 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=72.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCcc----CCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC---
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--- 345 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia----~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~--- 345 (480)
+.|.++|..|.|||||+|.|.+....-. +.......+.+-.......+....+.-.++++||||+.+.-....
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 5689999999999999999998732111 111110111111111111111122334799999999976422110
Q ss_pred ----ccchhhhhhh--------------ccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 346 ----GLGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 346 ----gl~~~fl~~i--------------~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
-+..+|-.++ .|.|++||.+..+... ..-+++ ++.+|.. ...+|-|+-|+|...
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls~------~vNlIPVI~KaD~lT 176 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLSK------RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHhc------ccCeeeeeeccccCC
Confidence 0111221111 3679999999987643 233333 2334442 467899999999998
Q ss_pred hHH
Q 011645 407 ARD 409 (480)
Q Consensus 407 ~~e 409 (480)
.+|
T Consensus 177 ~~E 179 (373)
T COG5019 177 DDE 179 (373)
T ss_pred HHH
Confidence 755
No 326
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.9e-06 Score=92.61 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=90.8
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCC---------------c--cCCC--------------ceeeeccceeccCC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPD---------------I--ADYP--------------FTTLMPNLGRLDGD 317 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~---------------i--a~~p--------------fTTl~p~~g~v~~~ 317 (480)
-+....++++|..+||||||+-.|.-.--. . ++.. +.|.+...-.++
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 345667899999999999999998532111 1 1111 112211111111
Q ss_pred CCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCC------CChhhHHHHHHHHHhhCCCCC
Q 011645 318 PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPDYL 391 (480)
Q Consensus 318 ~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~------~~~~~~~~l~~eL~~~~~~l~ 391 (480)
. -...++|+|+||+.+. -...+.-+..||+.++|||++.. ++..+.+.....|+.+.
T Consensus 252 s------~~~~~tliDaPGhkdF-------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---- 314 (603)
T KOG0458|consen 252 S------KSKIVTLIDAPGHKDF-------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---- 314 (603)
T ss_pred c------CceeEEEecCCCcccc-------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC----
Confidence 1 0236899999997442 22334455679999999999863 23334455555555433
Q ss_pred CCCEEEEEeCCCCcCh-HHHHHHHHHHHH-----hc-------CceeeecccccCHHHH
Q 011645 392 ERPFIVVLNKIDLPEA-RDRLQSLTEEIL-----KI-------GCDKVTSETELSSEDA 437 (480)
Q Consensus 392 ~kp~ivV~NK~Dl~~~-~e~~~~l~~~l~-----~~-------g~~~~sa~t~~Gi~~l 437 (480)
-..+||++||+|+.+. +++++++...+. .. .|.+|+.-+++++...
T Consensus 315 i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 315 ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3568999999999864 556666665432 22 4557787777775543
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.39 E-value=1.8e-07 Score=94.40 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=39.5
Q ss_pred CCCCEEEEEeCCCCcCh-HHHHHHHHHHHHh----cCceeeecccccCHHHHHHHHHHh
Q 011645 391 LERPFIVVLNKIDLPEA-RDRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 391 ~~kp~ivV~NK~Dl~~~-~e~~~~l~~~l~~----~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
...+-++|+||+|+... ...++.+.+.+.. ..+..+|+.+++|+++++++|.+.
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45777999999999753 2234444444443 356788999999999999999753
No 328
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.4e-06 Score=88.74 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=76.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC---------------------------------CCceeeeccceeccC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------------------------YPFTTLMPNLGRLDG 316 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------------------------------~pfTTl~p~~g~v~~ 316 (480)
|.+.++..+|-..-||||||-+|.-....+-+ ..+.|++.....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45667889999999999999999754322200 012333332222221
Q ss_pred CCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCC-CCE
Q 011645 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPF 395 (480)
Q Consensus 317 ~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kp~ 395 (480)
+ ..+|+++||||+... .+....-...||+.+++||+......+..+. ..... +.+ +.+
T Consensus 84 ~--------KRkFIiADTPGHeQY-------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRH-s~I~s-----LLGIrhv 142 (431)
T COG2895 84 E--------KRKFIIADTPGHEQY-------TRNMATGASTADLAILLVDARKGVLEQTRRH-SFIAS-----LLGIRHV 142 (431)
T ss_pred c--------cceEEEecCCcHHHH-------hhhhhcccccccEEEEEEecchhhHHHhHHH-HHHHH-----HhCCcEE
Confidence 1 357999999998432 2222223467999999999976543332221 11111 123 568
Q ss_pred EEEEeCCCCcCh-HHHHHHHHHHH
Q 011645 396 IVVLNKIDLPEA-RDRLQSLTEEI 418 (480)
Q Consensus 396 ivV~NK~Dl~~~-~e~~~~l~~~l 418 (480)
++.+|||||.+- ++.++++.+.+
T Consensus 143 vvAVNKmDLvdy~e~~F~~I~~dy 166 (431)
T COG2895 143 VVAVNKMDLVDYSEEVFEAIVADY 166 (431)
T ss_pred EEEEeeecccccCHHHHHHHHHHH
Confidence 889999999864 45555555543
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.37 E-value=5.5e-07 Score=83.70 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=45.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
...+++++|.+|+|||||+|+|.+... ..++.++||.......+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence 346899999999999999999998765 557889999877654432 26899999997
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.1e-06 Score=95.28 Aligned_cols=122 Identities=27% Similarity=0.346 Sum_probs=79.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-Cc-----c--CCCceeeeccceeccCC--CC---CCc-cccCCceEEecCCc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DI-----A--DYPFTTLMPNLGRLDGD--PT---LGA-EKYSSEATLADLPG 336 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~i-----a--~~pfTTl~p~~g~v~~~--~~---~~~-~~~~~~~~l~DTPG 336 (480)
.+..|+++|+-.+|||+|+..|....- .. + .|+-|+......-+... +. ..+ ..-..-+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 456799999999999999999986532 11 2 22222211111111100 00 000 00012478999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+... .......++-+|++++|||+........-+.+...++ ...|+++|+||+|+.
T Consensus 207 HVnF-------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNF-------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred cccc-------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence 9653 4456677788999999999998877777666666666 368999999999964
No 331
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.27 E-value=1.6e-06 Score=79.99 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=41.4
Q ss_pred CceEEecCCcccccccccCc-cchhhhhhhccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 327 SEATLADLPGLIEGAHLGKG-LGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~g-l~~~fl~~i~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
.+.+++||||+.+....-.. +....+....+.+.+++|+|+..... ......+...++. .=++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEecccC
Confidence 46899999999764321111 11123345567899999999875221 1122334444443 22789999996
No 332
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.26 E-value=3.1e-06 Score=82.58 Aligned_cols=93 Identities=19% Similarity=-0.006 Sum_probs=59.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC--CCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~--~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
.+.-|+++|.+++|||||||.|.+. ...+ ...+.||............ .-...++++||||+.+..... ..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-----~~~~~v~~lDteG~~~~~~~~-~~ 79 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-----GKEHAVLLLDTEGTDGRERGE-FE 79 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-----CCcceEEEEecCCcCccccCc-hh
Confidence 3456999999999999999999998 4454 3445666644433332210 002379999999997643221 01
Q ss_pred chhhhhhhc--cCCEEEEecccCC
Q 011645 348 GRNFLRHLR--RTRLLVHVIDAAA 369 (480)
Q Consensus 348 ~~~fl~~i~--~ad~ll~VvD~s~ 369 (480)
....+-.+. -++++||.++...
T Consensus 80 ~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 80 DDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhhHHHHHHHHHhCEEEEeccCcc
Confidence 122233333 3899999999864
No 333
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.9e-05 Score=81.70 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=72.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-------cCCCceeee--ccceeccCCCCCCccccCCceEEecCCcccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 343 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-------a~~pfTTl~--p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~ 343 (480)
+.+.++|..|.|||||+|.|......- ...+-.|+. .....+. ...+.-+++|+||||+.+.-..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie------e~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE------ENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec------CCCeEEeeEEeccCCCcccccc
Confidence 468899999999999999998763211 111111211 1111111 1123347899999999764221
Q ss_pred c-------Cccchhhhhh-----------hc--cCCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 344 G-------KGLGRNFLRH-----------LR--RTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 344 ~-------~gl~~~fl~~-----------i~--~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
. .-+...|-++ +. |.+++||.|..+.. -..-++.. ...|. ....+|-|+-|+
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~-Mk~l~------~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF-MKKLS------KKVNLIPVIAKA 168 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHH-HHHHh------ccccccceeecc
Confidence 1 0112222222 22 78999999998864 22233332 23333 247789999999
Q ss_pred CCcChHHH
Q 011645 403 DLPEARDR 410 (480)
Q Consensus 403 Dl~~~~e~ 410 (480)
|.....+.
T Consensus 169 D~lT~~El 176 (366)
T KOG2655|consen 169 DTLTKDEL 176 (366)
T ss_pred ccCCHHHH
Confidence 99987553
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.20 E-value=9.1e-06 Score=74.29 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=60.4
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~sa 428 (480)
++.++.+|++++|+|++.+.... ...+.+.+.... .++|+++|+||+|+...++ ...+...+.+.. ...+++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~~---~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKEK---PHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhcc---CCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeec
Confidence 56788999999999998753322 233444454321 2489999999999976543 444444444332 234688
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.+++++++.+.+..
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 89999999999987543
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.19 E-value=1.5e-06 Score=90.24 Aligned_cols=55 Identities=29% Similarity=0.321 Sum_probs=40.3
Q ss_pred EEEecCCCCChHHHHHHHhcCCC-CccCCC-------ceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
++|+|.||||||||||+|.+... .+++.+ .||....+..+.. ...|+||||+.+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcc
Confidence 78999999999999999997654 334444 3666655554421 3469999999774
No 336
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.4e-05 Score=80.00 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=83.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-----------CccC-----CCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-----------DIAD-----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-----------~ia~-----~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
|.-.+|+.+|..+-|||||..+|+..-. .|.. .-+.|+.+....++.. ...+..+|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVD 81 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVD 81 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEecc
Confidence 4456899999999999999999975311 1111 1244554433333222 24688999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHH
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 412 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~ 412 (480)
+||+.+. -+..+.-....|..|+|+.+++..-.+..+.++ |.. ..+.| +++++||+|+.+..+.++
T Consensus 82 cPGHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--lar----qvGvp~ivvflnK~Dmvdd~elle 148 (394)
T COG0050 82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LAR----QVGVPYIVVFLNKVDMVDDEELLE 148 (394)
T ss_pred CCChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhh----hcCCcEEEEEEecccccCcHHHHH
Confidence 9998553 222333445689999999998854333333332 111 14566 677789999998665544
Q ss_pred ----HHHHHHHhcCce
Q 011645 413 ----SLTEEILKIGCD 424 (480)
Q Consensus 413 ----~l~~~l~~~g~~ 424 (480)
++++.+..+++.
T Consensus 149 lVemEvreLLs~y~f~ 164 (394)
T COG0050 149 LVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 455667777665
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.18 E-value=2.7e-06 Score=77.50 Aligned_cols=55 Identities=33% Similarity=0.498 Sum_probs=41.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGl 337 (480)
..+|+++|.+|+|||||+|+|.+... .+++.+++|.+.....+ ...+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-----------TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-----------CCCEEEEECcCC
Confidence 35789999999999999999997654 44677777765443222 126899999996
No 338
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-05 Score=88.12 Aligned_cols=140 Identities=22% Similarity=0.253 Sum_probs=83.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceee-----ec---cceeccCCC-------------------C--C
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-----MP---NLGRLDGDP-------------------T--L 320 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl-----~p---~~g~v~~~~-------------------~--~ 320 (480)
+.-.+|+|.|..|+||||++||+...+.-....-.||- .- ..++.-.+. . .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 46679999999999999999999987765544444441 00 111110000 0 0
Q ss_pred C----------cc---ccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhC
Q 011645 321 G----------AE---KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN 387 (480)
Q Consensus 321 ~----------~~---~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~ 387 (480)
. .. -+.+.+.++|.||+.-+.. +....-.+...+|++|||+.+.+..+......+. .-.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~----~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH----KVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH----Hhh
Confidence 0 00 0123588999999965422 2333456678899999999988654443333222 211
Q ss_pred CCCCCCC-EEEEEeCCCCcCh-HHHHHHHHHHHHh
Q 011645 388 PDYLERP-FIVVLNKIDLPEA-RDRLQSLTEEILK 420 (480)
Q Consensus 388 ~~l~~kp-~ivV~NK~Dl~~~-~e~~~~l~~~l~~ 420 (480)
..+| +.|+.||+|...+ .+..+.+.+++.+
T Consensus 259 ---~~KpniFIlnnkwDasase~ec~e~V~~Qi~e 290 (749)
T KOG0448|consen 259 ---EEKPNIFILNNKWDASASEPECKEDVLKQIHE 290 (749)
T ss_pred ---ccCCcEEEEechhhhhcccHHHHHHHHHHHHh
Confidence 2366 6666788898755 4555556555443
No 339
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.16 E-value=1.4e-06 Score=89.99 Aligned_cols=64 Identities=27% Similarity=0.477 Sum_probs=52.6
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~ 342 (480)
+|+...+||+||+||+||||+||+|...+. .+++.|+.|..-....+ +..+.|+|.||++-...
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-----------dk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-----------DKKIRLLDSPGIVPPSI 312 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-----------cCCceeccCCceeecCC
Confidence 588999999999999999999999998876 67889988875544333 24789999999986543
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=1.9e-06 Score=89.55 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=41.3
Q ss_pred EEEecCCCCChHHHHHHHhcCCC-CccCCCc-------eeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKP-DIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
++|+|.||||||||||+|.+... .+++.+. ||.+..+..+. ....|+||||+.+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-----------~g~~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-----------NGGLLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-----------CCcEEEeCCCcccc
Confidence 79999999999999999997653 4466666 77766554442 12479999999653
No 341
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=3.8e-06 Score=81.32 Aligned_cols=126 Identities=19% Similarity=0.124 Sum_probs=81.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
.+|.+.|.+|+||||+=..+.....+- ...++.|++...+++.+-+. --+.+||..|+.+.-. .-+...-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~fme--n~~~~q~ 75 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEEFME--NYLSSQE 75 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHHHHH--HHHhhcc
Confidence 479999999999999877765433222 34567778777777654432 1467899999853200 0000000
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
-..+...++++||+|++..+-..++......|+.+...-....+.+.+.|+|+...
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 12346689999999999877666666666555543322234568888999999754
No 342
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.12 E-value=1.5e-06 Score=89.55 Aligned_cols=60 Identities=28% Similarity=0.430 Sum_probs=48.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
|.-+.|||||+||+||||+||+|-..++ +++++|+.|.--+..++ -.+|.++|+||+.-.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYP 365 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCC
Confidence 3446799999999999999999998887 77999999875444333 147999999998753
No 343
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.10 E-value=1e-05 Score=73.82 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=99.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCcee---eeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT---LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT---l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
.+|+++|.+..|||||+-...+..... .+.-|+ .......+... .-.+.+||..|..+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t--------~IsfSIwdlgG~~~---------- 81 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGT--------DISFSIWDLGGQRE---------- 81 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecce--------EEEEEEEecCCcHh----------
Confidence 589999999999999998887664321 111000 00001111111 12588999999854
Q ss_pred hhhhhh----ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC-----hHHHHHHHHHHH-H
Q 011645 350 NFLRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-----ARDRLQSLTEEI-L 419 (480)
Q Consensus 350 ~fl~~i----~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~-----~~e~~~~l~~~l-~ 419 (480)
|..++ ..+-+++|++|.+.+.+......|...-+.++. ...| |+|.+|-|+.- .++.+....... +
T Consensus 82 -~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk 157 (205)
T KOG1673|consen 82 -FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAK 157 (205)
T ss_pred -hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHH
Confidence 33333 467899999999999988888888877776543 3466 56799998631 122222222222 2
Q ss_pred --hcCceeeecccccCHHHHHHHHHHhcCccc
Q 011645 420 --KIGCDKVTSETELSSEDAVKSLSTEGGEAD 449 (480)
Q Consensus 420 --~~g~~~~sa~t~~Gi~~ll~~Ls~~~~~~~ 449 (480)
+..+.+|++....+++..+..+.+++-+..
T Consensus 158 ~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 158 VMNASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred HhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 235679999999999999998888775433
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=1.2e-05 Score=75.79 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=57.8
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHH--HHHHhc-
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT--EEILKI- 421 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~--~~l~~~- 421 (480)
...+..+++++|++++|+|+++...... .++.. ...++|+++|+||+|+..... ....+. ......
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~---~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRL---FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccc-----hhHHH---hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 3345567789999999999987542211 12211 113689999999999874322 122222 111111
Q ss_pred ----CceeeecccccCHHHHHHHHHHhc
Q 011645 422 ----GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 ----g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+..+|+.++.|++++++.+....
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999997654
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=3e-06 Score=83.83 Aligned_cols=55 Identities=27% Similarity=0.296 Sum_probs=39.6
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-CccC-------CCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
.++|+|.+|||||||||+|.+... ++++ ...||.+.....+. ...|+||||+.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~------------~~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH------------GGLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC------------CcEEEeCCCcccc
Confidence 589999999999999999997643 2222 23477666554441 2479999999764
No 346
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.06 E-value=2e-05 Score=77.92 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=64.7
Q ss_pred hhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeeeccc
Q 011645 354 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSET 430 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~t 430 (480)
++..+|.+++|+|+.++. +++.+..|+..++. .+.|+++|+||+||....+...++.+.+...+ +.++|+++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 567899999999999766 67777776665543 36899999999999754443334445555554 45789999
Q ss_pred ccCHHHHHHHHHHh
Q 011645 431 ELSSEDAVKSLSTE 444 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~ 444 (480)
+.|++++++.+..+
T Consensus 108 g~gi~eLf~~l~~~ 121 (245)
T TIGR00157 108 QDGLKELIEALQNR 121 (245)
T ss_pred chhHHHHHhhhcCC
Confidence 99999999988643
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.03 E-value=1.9e-05 Score=73.36 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=59.8
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc--Cceeee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVT 427 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~s 427 (480)
+..+.++.||++++|+|++.+....+.. +.+.+ .++|.++|+||+|+....+ ...+.+.++.. .+..++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEEEE
Confidence 4567789999999999998654332222 22222 2589999999999975432 33333444432 345789
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++.|++++.+.+....
T Consensus 83 a~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 999999999999988764
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.03 E-value=2.3e-05 Score=71.29 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=58.2
Q ss_pred hhhhhcc-CCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~-ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~s 427 (480)
.++|+.+ ||++++|+|++.+....+. .+...+.. .++|+++|+||+|+....+ ...+...... ..+..+|
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEEEE
Confidence 3566654 9999999999875433332 23333322 3589999999999975432 2232222222 2356789
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++.|++++++.+.+..
T Consensus 78 a~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 78 AKERLGTKILRRTIKELA 95 (156)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999987654
No 349
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1e-05 Score=76.11 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=101.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCcee---e-----eccceeccCCCCCCccccCCceEEecCCccccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT---L-----MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT---l-----~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~ 342 (480)
...+++++|..+.||+|++++.......-. |+-|+ . +.+.|. -++.+|||.|.....
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~-y~at~Gv~~~pl~f~tn~g~-------------irf~~wdtagqEk~g- 73 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKT-YPATLGVEVHPLLFDTNRGQ-------------IRFNVWDTAGQEKKG- 73 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceec-ccCcceeEEeeeeeecccCc-------------EEEEeeecccceeec-
Confidence 467899999999999999999876543321 22121 1 112221 268899999985421
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHH-HHHHhc
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-EEILKI 421 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~-~~l~~~ 421 (480)
++.. -.+|. ..+.++++|++...+......|..++..-. .+.|++++.||.|........+.+. -.-.++
T Consensus 74 ---glrd--gyyI~-~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl 144 (216)
T KOG0096|consen 74 ---GLRD--GYYIQ-GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNL 144 (216)
T ss_pred ---cccc--ccEEe-cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccccccccceeeecccc
Confidence 1222 22333 456788899998888777777887777643 3589999999999876431111111 111345
Q ss_pred CceeeecccccCHHHHHHHHHHhcC
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.+.+.|+++.-+.+..+.+|+.++.
T Consensus 145 ~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 145 QYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred eeEEeecccccccccchHHHhhhhc
Confidence 5668899999999999999998764
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.99 E-value=3.1e-05 Score=69.65 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=50.9
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVT 427 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~s 427 (480)
.+++++++||++++|+|+..+....+ ..+.+.+.... .++|+++|+||+|+.... ....+.+.++..+ +.+++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEEE
Confidence 57889999999999999987654433 23444444321 368999999999997543 3445555565544 34556
Q ss_pred cccc
Q 011645 428 SETE 431 (480)
Q Consensus 428 a~t~ 431 (480)
+.++
T Consensus 79 a~~~ 82 (141)
T cd01857 79 ALKE 82 (141)
T ss_pred ecCC
Confidence 5544
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.93 E-value=7.4e-06 Score=75.99 Aligned_cols=57 Identities=26% Similarity=0.296 Sum_probs=35.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-C---ccCC----CceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-D---IADY----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-~---ia~~----pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
..++|+|.+|||||||+|+|..... + ++.. -.||....+..+. ....|+||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCcc
Confidence 5699999999999999999998632 2 2211 2344444333331 25789999999764
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=1.9e-05 Score=84.53 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=80.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
=|+++|+||+||||||+.|...-. -.|++...|.+..... -..++++..+|.-+ +++..
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsg-----K~RRiTflEcp~Dl----------~~miD 129 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSG-----KTRRITFLECPSDL----------HQMID 129 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeec-----ceeEEEEEeChHHH----------HHHHh
Confidence 478999999999999999987522 2244444554432211 12479999999532 23455
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHHHHHHHHH
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEI 418 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~~~l~~~l 418 (480)
...-||++|++||+.-....+.++.| +.|.. .+.| ++-|++..|+......+...+..+
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFL-nil~~-----HGmPrvlgV~ThlDlfk~~stLr~~KKrl 189 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFL-NILIS-----HGMPRVLGVVTHLDLFKNPSTLRSIKKRL 189 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHH-HHHhh-----cCCCceEEEEeecccccChHHHHHHHHHH
Confidence 55668999999999987666665544 44443 2455 788999999998777666666644
No 353
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=1.2e-05 Score=81.62 Aligned_cols=56 Identities=30% Similarity=0.326 Sum_probs=39.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-CccCCC-------ceeeeccceeccCCCCCCccccCCceEEecCCcccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie 339 (480)
..++|+|.+|||||||+|+|.+... ..++.+ .||.......+. ....++||||+.+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCc
Confidence 3589999999999999999997653 233333 266555444432 2458899999975
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=5.7e-05 Score=75.89 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=60.3
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc--Cceeee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVT 427 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~s 427 (480)
++.+.++.+|++|+|+|+..+...++. .+.+.+ .++|+++|+||+|+.+.. ....+.+.+... .+..++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADPA-VTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCHH-HHHHHHHHHHHcCCeEEEEE
Confidence 456778999999999999865443332 222222 258999999999997543 234444444443 345789
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+..+.|++++++.+.+..
T Consensus 85 a~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 999999999998887654
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.83 E-value=9e-05 Score=67.62 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred CEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc---CceeeecccccCHH
Q 011645 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSETELSSE 435 (480)
Q Consensus 359 d~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa~t~~Gi~ 435 (480)
|++|+|+|+..+............+.. .++|+++|+||+|+....+ ...+...+... .+..+|+.++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999876544432211122222 3689999999999976432 33333333322 24578999999999
Q ss_pred HHHHHHHHh
Q 011645 436 DAVKSLSTE 444 (480)
Q Consensus 436 ~ll~~Ls~~ 444 (480)
++.+.+.+.
T Consensus 75 ~L~~~i~~~ 83 (155)
T cd01849 75 KKESAFTKQ 83 (155)
T ss_pred hHHHHHHHH
Confidence 999988654
No 356
>PRK12289 GTPase RsgA; Reviewed
Probab=97.81 E-value=0.00011 Score=76.54 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=59.1
Q ss_pred hhccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeeeccc
Q 011645 354 HLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSET 430 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~t 430 (480)
.+..+|.+++|+|+.++.. ...+..++..... .++|+++|+||+||....+ .+.+.+.+...+ +..+|+.+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcCC
Confidence 4678999999999986542 2233333333322 4689999999999986433 455556665555 45779999
Q ss_pred ccCHHHHHHHHHH
Q 011645 431 ELSSEDAVKSLST 443 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~ 443 (480)
+.|++++++.+..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999998853
No 357
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.78 E-value=3.5e-05 Score=73.21 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=49.4
Q ss_pred CEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHH----HhcCceeeecccccC
Q 011645 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEI----LKIGCDKVTSETELS 433 (480)
Q Consensus 359 d~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l----~~~g~~~~sa~t~~G 433 (480)
++-++|+|.+.++.. -++-.|.+.. .=++|+||.|+...-+ .++...+.. .+..+.+++.++++|
T Consensus 119 ~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 377999999876421 1121222222 5689999999986421 123333333 345788999999999
Q ss_pred HHHHHHHHHHh
Q 011645 434 SEDAVKSLSTE 444 (480)
Q Consensus 434 i~~ll~~Ls~~ 444 (480)
++++++++...
T Consensus 189 ~~~~~~~i~~~ 199 (202)
T COG0378 189 LDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHhh
Confidence 99999998654
No 358
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.77 E-value=2.5e-05 Score=73.32 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=45.5
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
...+++.+.|+-+.... -+....+...-..+.++.|+|+..-...... ..+...+.. .=++|+||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--------ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--------ADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---------SEEEEE-GGGH
T ss_pred cCEEEECCccccccchh--hhccccccccccccceeEEeccccccccccchhhhhhcchh--------cCEEEEeccccC
Confidence 36788899997554322 0011122223456899999999652111222 223333332 238999999998
Q ss_pred ChHHHHHHHHHHHHhc
Q 011645 406 EARDRLQSLTEEILKI 421 (480)
Q Consensus 406 ~~~e~~~~l~~~l~~~ 421 (480)
+..+.++.+.+.+.++
T Consensus 155 ~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDEQKIERVREMIREL 170 (178)
T ss_dssp HHH--HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH
Confidence 7654456666666544
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.76 E-value=0.00015 Score=74.49 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=52.5
Q ss_pred ceEEecCCccccccccc-Cccchhhhhhh-----ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 328 EATLADLPGLIEGAHLG-KGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~-~gl~~~fl~~i-----~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
.++|+||||.......- ..+. .+.+.+ ...+-.++|+|++.. .+.+... ..|... -.+.-+|+||
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a----~~f~~~--~~~~giIlTK 268 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELK-KIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA----KAFHEA--VGLTGIILTK 268 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH----HHHHhh--CCCCEEEEEC
Confidence 68999999975421110 0111 122222 235778999999953 2333322 222111 1356789999
Q ss_pred CCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 402 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 402 ~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
+|....-..+-. .....+++-...-++++++++..
T Consensus 269 lD~t~~~G~~l~---~~~~~~~Pi~~v~~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAKGGVVFA---IADELGIPIKFIGVGEGIDDLQP 303 (318)
T ss_pred CCCCCCccHHHH---HHHHHCCCEEEEeCCCChhhCcc
Confidence 996643222222 23333444334448888866543
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=97.75 E-value=0.00012 Score=74.56 Aligned_cols=84 Identities=19% Similarity=0.121 Sum_probs=60.0
Q ss_pred hccCCEEEEecccCCCCChhh-HHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeeecccc
Q 011645 355 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETE 431 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~t~ 431 (480)
+..+|++++|+|+.++++... .+.++..+.. .++|.++|+||+|+....+....+.+.+...+ +..+|+.++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 578999999999987655433 2444444443 36899999999999744444445555555554 457899999
Q ss_pred cCHHHHHHHHHH
Q 011645 432 LSSEDAVKSLST 443 (480)
Q Consensus 432 ~Gi~~ll~~Ls~ 443 (480)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999998753
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.75 E-value=0.00011 Score=74.29 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=65.3
Q ss_pred cCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH
Q 011645 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 412 (480)
Q Consensus 333 DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~ 412 (480)
--||+...+ .+++.+.++.||++|+|+|+..+...+.. .+.+.+ .++|+++|+||+|+.+. +..+
T Consensus 6 wfpgHm~k~------~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~-------~~kp~iiVlNK~DL~~~-~~~~ 70 (287)
T PRK09563 6 WFPGHMAKA------RREIKENLKLVDVVIEVLDARIPLSSENP-MIDKII-------GNKPRLLILNKSDLADP-EVTK 70 (287)
T ss_pred CcHHHHHHH------HHHHHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh-------CCCCEEEEEEchhcCCH-HHHH
Confidence 356765421 23456788999999999999865443331 122222 25899999999999754 3344
Q ss_pred HHHHHHHhcC--ceeeecccccCHHHHHHHHHHhc
Q 011645 413 SLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 413 ~l~~~l~~~g--~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.+.++..+ +..+++.++.|++++++.+.+..
T Consensus 71 ~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 71 KWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 5555554433 45778999999999998876554
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.73 E-value=0.00022 Score=75.83 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=63.6
Q ss_pred ceEEEecCCCCChHHHHHHHh------cCCCCc-cCCCcee----------eeccceeccCCCCCCc-----------cc
Q 011645 273 ADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTT----------LMPNLGRLDGDPTLGA-----------EK 324 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt------~~~~~i-a~~pfTT----------l~p~~g~v~~~~~~~~-----------~~ 324 (480)
.-|+|+|.+||||||++..|. +.++.+ +.-++.. .....-.+.......+ ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999996 333332 2212110 0000000100000000 00
Q ss_pred cCCceEEecCCcccccccccCccchhhhh--hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
-...++|+||||.... ...+-..... .....+.+++|+|++.... ... ..+.|.. .-.+.-+|+||+
T Consensus 181 ~~~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~----~a~~F~~--~~~~~g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEA----QAKAFKD--SVDVGSVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHH----HHHHHHh--ccCCcEEEEECc
Confidence 0237899999996432 1112222111 2234688999999875422 221 2223321 124678899999
Q ss_pred CCcCh
Q 011645 403 DLPEA 407 (480)
Q Consensus 403 Dl~~~ 407 (480)
|....
T Consensus 250 D~~ar 254 (429)
T TIGR01425 250 DGHAK 254 (429)
T ss_pred cCCCC
Confidence 98643
No 363
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.68 E-value=5e-05 Score=76.64 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=46.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 343 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~ 343 (480)
.-..|.+||.||+|||||+|++.... ..++.+|+.|...... +.+.. ...+.++||||++.....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~-------rp~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISH-------RPPVYLIDTPGILVPSIV 212 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEecc-------CCceEEecCCCcCCCCCC
Confidence 44679999999999999999986542 2347899999865442 22211 236899999999876443
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.64 E-value=5e-05 Score=76.81 Aligned_cols=56 Identities=32% Similarity=0.295 Sum_probs=37.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccC-------CCceeeeccceeccCCCCCCccccCCceEEecCCcccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie 339 (480)
..++++|.+|||||||+|+|++.... .+. -..||.......+. ....++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCc
Confidence 36999999999999999999986432 121 22355544333321 1347999999965
No 365
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.64 E-value=0.00012 Score=56.14 Aligned_cols=48 Identities=31% Similarity=0.557 Sum_probs=33.1
Q ss_pred hhhhhccCCEEEEecccCC--CCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 351 FLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
.++|+. ++++|++|+|. +.+.++...++++++.. +.++|+++|+||+|
T Consensus 9 AL~hL~--~~ilfi~D~Se~CGysie~Q~~L~~~ik~~---F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLA--DAILFIIDPSEQCGYSIEEQLSLFKEIKPL---FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH---TTTS-EEEEE--TT
T ss_pred HHHhhc--ceEEEEEcCCCCCCCCHHHHHHHHHHHHHH---cCCCCEEEEEeccC
Confidence 466664 78999999997 56778888888899863 24799999999998
No 366
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.00024 Score=70.66 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=74.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCcc----CCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc-
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG- 346 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia----~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g- 346 (480)
-+.|.-||-+|-|||||+..|.+.+..-. .+|..-+.++...+.-.. ..-+++|+||.|+.+.-.....
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsn------vrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESN------VRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcC------eeEEEEEEeecccccccCccccc
Confidence 35789999999999999999998754332 233333333333322111 1236899999998653221111
Q ss_pred ------cchhhh---------------hhhccCCEEEEecccCCCCChhhHHH-HHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 347 ------LGRNFL---------------RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 347 ------l~~~fl---------------~~i~~ad~ll~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
+...|- -|=.|.++.||.|..+... ...++. ....|. ....+|-|+-|.|.
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLvtmk~Ld------skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLVTMKKLD------SKVNIIPVIAKADT 188 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHHHHHHHh------hhhhhHHHHHHhhh
Confidence 111221 2225789999999988753 222222 223333 35678889999998
Q ss_pred cChHH
Q 011645 405 PEARD 409 (480)
Q Consensus 405 ~~~~e 409 (480)
....+
T Consensus 189 isK~e 193 (406)
T KOG3859|consen 189 ISKEE 193 (406)
T ss_pred hhHHH
Confidence 87654
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.60 E-value=0.0004 Score=71.46 Aligned_cols=84 Identities=27% Similarity=0.329 Sum_probs=51.3
Q ss_pred ceEEecCCcccccccccCccchhhhh-----hhccCCEEEEecccCCCCChhh--HHHHHHHHHhhCCCCCCCCEEEEEe
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFIVVLN 400 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~-----~i~~ad~ll~VvD~s~~~~~~~--~~~l~~eL~~~~~~l~~kp~ivV~N 400 (480)
..+++.|-|+-+... +...|.. ..-+-|.++-|||+..-..... .+...+.+.. .=++|+|
T Consensus 86 D~ivIEtTGlA~P~p----v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivlN 153 (323)
T COG0523 86 DRLVIETTGLADPAP----VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVLN 153 (323)
T ss_pred CEEEEeCCCCCCCHH----HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEEe
Confidence 577888888865421 1222222 2234688999999987432111 1223333332 2389999
Q ss_pred CCCCcChHHHHHHHHHHHHhcCce
Q 011645 401 KIDLPEARDRLQSLTEEILKIGCD 424 (480)
Q Consensus 401 K~Dl~~~~e~~~~l~~~l~~~g~~ 424 (480)
|+|+.++.+ ++.+.+.+.++.-.
T Consensus 154 K~Dlv~~~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 154 KTDLVDAEE-LEALEARLRKLNPR 176 (323)
T ss_pred cccCCCHHH-HHHHHHHHHHhCCC
Confidence 999998764 77888888776433
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.59 E-value=0.00041 Score=69.80 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=53.2
Q ss_pred ceEEecCCccccccccc-Cccchhhhhhhc-----cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 328 EATLADLPGLIEGAHLG-KGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~-~gl~~~fl~~i~-----~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
.++|+||||.......- ..+ ..+.+.+. .+|.+++|+|++.. .+.+.......+. -.+.-+|+||
T Consensus 156 D~ViIDT~G~~~~d~~~~~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~------~~~~g~IlTK 226 (272)
T TIGR00064 156 DVVLIDTAGRLQNKVNLMDEL-KKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEA------VGLTGIILTK 226 (272)
T ss_pred CEEEEeCCCCCcchHHHHHHH-HHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhh------CCCCEEEEEc
Confidence 68999999975421100 001 11222222 27899999999742 3444333222221 1356889999
Q ss_pred CCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHH
Q 011645 402 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 438 (480)
Q Consensus 402 ~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll 438 (480)
+|.......+-.+.... ..++.++. ++++++++.
T Consensus 227 lDe~~~~G~~l~~~~~~-~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKGGIILSIAYEL-KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCccHHHHHHHHH-CcCEEEEe--CCCChHhCc
Confidence 99876433333333322 34444444 778776554
No 369
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=5.5e-05 Score=76.51 Aligned_cols=56 Identities=30% Similarity=0.294 Sum_probs=38.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-C---ccC----CCceeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-D---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~---ia~----~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
-.+|+|.+|||||||+|+|..... + |+. --.||.......+.. .=.|+||||+.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCcc
Confidence 478999999999999999986422 2 221 224665555544421 2378999999763
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.59 E-value=0.00054 Score=62.57 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=38.1
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
..++|+||||... .+...+..||.+++|...+ ..+.+..+..+.- ...-++|+||+|
T Consensus 92 ~D~iiIDtaG~~~----------~~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~~-------~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ----------SEVDIASMADTTVVVMAPG---AGDDIQAIKAGIM-------EIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh----------hhhhHHHhCCEEEEEECCC---chhHHHHhhhhHh-------hhcCEEEEeCCC
Confidence 3689999999743 2345667799999998876 3344443333222 345589999998
No 371
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.58 E-value=0.00031 Score=72.89 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.++-..|.|+-|||||||||.|...
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhc
Confidence 34556788999999999999999754
No 372
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.57 E-value=0.00068 Score=72.70 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=77.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCC---------CC-------------------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPT---------LG------------------- 321 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~---------~~------------------- 321 (480)
.+++|++||.-.|||||.|..+..++.-. ++-...|..|.-.++...+. ..
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 56789999999999999999998775422 22222333332222111000 00
Q ss_pred ---------------------ccccCCceEEecCCcccccc-----ccc-CccchhhhhhhccCCEEEEecccCCCCChh
Q 011645 322 ---------------------AEKYSSEATLADLPGLIEGA-----HLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVN 374 (480)
Q Consensus 322 ---------------------~~~~~~~~~l~DTPGlie~a-----~~~-~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~ 374 (480)
... ..+++++|.||+|..- .+. ..+-.....|++..++||++|.-...+..
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPg-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE- 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPG-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE- 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCCC-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh-
Confidence 000 1358899999998742 121 23444556778888888887733222211
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 375 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 375 ~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
-..+-..+...+| .++..|+|++|+|+.+.
T Consensus 465 -RSnVTDLVsq~DP--~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 -RSIVTDLVSQMDP--HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred -hhhHHHHHHhcCC--CCCeeEEEEeecchhhh
Confidence 1122233334444 67889999999999764
No 373
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00035 Score=77.45 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=75.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccC-CCceee------eccc-------eeccCCCCCCccccCCceEEecCCc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTL------MPNL-------GRLDGDPTLGAEKYSSEATLADLPG 336 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-~pfTTl------~p~~-------g~v~~~~~~~~~~~~~~~~l~DTPG 336 (480)
.+..|.++-+..-|||||...|......|+. .+++-+ +.+. ..+.+. .. ...+.++|+||
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~----~~--~~~~nlidspg 81 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL----HK--DYLINLIDSPG 81 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc----cC--ceEEEEecCCC
Confidence 3456899999999999999999877654422 222110 1111 111110 00 12588999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
+++..++ ......-||..+++||+-.+...+.+..+++.... +...++|+||+|.
T Consensus 82 hvdf~se-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidr 136 (887)
T KOG0467|consen 82 HVDFSSE-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDR 136 (887)
T ss_pred ccchhhh-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhh
Confidence 9875332 33344568999999999988777777767665553 4567899999993
No 374
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.52 E-value=0.0002 Score=85.40 Aligned_cols=141 Identities=22% Similarity=0.202 Sum_probs=74.0
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeee-ccceeccCCCCCCccccCCceEEecCCccccccc----c
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----L 343 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~-p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~----~ 343 (480)
|-.++=..+||.||+||||||+.- +-+...++....+.. ...++-+.+ --+.++.+++||+|-.-... .
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-----wwf~~~avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-----WWFTDEAVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-----eEecCCEEEEcCCCccccCCCcccc
Confidence 445566889999999999999987 333222211000000 000010000 01346789999999542211 1
Q ss_pred cCccchhhhhhh------ccCCEEEEecccCCCC--Chhh----HHHHHHHHHhhCCCC-CCCCEEEEEeCCCCcCh-HH
Q 011645 344 GKGLGRNFLRHL------RRTRLLVHVIDAAAEN--PVND----YRTVKEELRMYNPDY-LERPFIVVLNKIDLPEA-RD 409 (480)
Q Consensus 344 ~~gl~~~fl~~i------~~ad~ll~VvD~s~~~--~~~~----~~~l~~eL~~~~~~l-~~kp~ivV~NK~Dl~~~-~e 409 (480)
....-..|+..+ +..+.||++||+++-. ..++ ...++..|......+ ...|+.||++|||+... .+
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF~~ 261 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFEE 261 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCHHH
Confidence 111122344433 3479999999998632 1121 122332222221111 46899999999998754 33
Q ss_pred HHHHHH
Q 011645 410 RLQSLT 415 (480)
Q Consensus 410 ~~~~l~ 415 (480)
....+.
T Consensus 262 ~f~~l~ 267 (1169)
T TIGR03348 262 FFADLD 267 (1169)
T ss_pred HHHhCC
Confidence 333333
No 375
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=0.00045 Score=69.94 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=58.8
Q ss_pred hccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeeecccc
Q 011645 355 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETE 431 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~t~ 431 (480)
+..+|++++|+|+..+. +...++.++..+.. .++|.++|+||+|+....+. ..........+ +..+|+.++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence 57899999999998876 55555555555543 36899999999999764322 22222233343 457899999
Q ss_pred cCHHHHHHHHHH
Q 011645 432 LSSEDAVKSLST 443 (480)
Q Consensus 432 ~Gi~~ll~~Ls~ 443 (480)
.|++++...|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 376
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.47 E-value=0.00094 Score=72.35 Aligned_cols=156 Identities=22% Similarity=0.173 Sum_probs=89.1
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccc-eeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~-g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
-|.+..+-++|..|+|||.||+++.+....- .+.+++-..+. -.+..... ...+++-|++-. +... +
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~------~k~LiL~ei~~~-~~~~----l 489 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQ------QKYLILREIGED-DQDF----L 489 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccc------cceEEEeecCcc-cccc----c
Confidence 3677889999999999999999999864322 22222211110 00110000 123566666543 2110 1
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-HHHHHHHhcCceee
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEILKIGCDKV 426 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-~l~~~l~~~g~~~~ 426 (480)
.. .. ..||++++|+|.+.+.+++-.. .+...|... ...|+++|+.|+|+.+..+... ...+...++++..+
T Consensus 490 ~~---ke-~~cDv~~~~YDsS~p~sf~~~a---~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 490 TS---KE-AACDVACLVYDSSNPRSFEYLA---EVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP 561 (625)
T ss_pred cC---cc-ceeeeEEEecccCCchHHHHHH---HHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC
Confidence 11 11 5699999999999776555433 334444333 6799999999999987543221 12344455665532
Q ss_pred ---ecccccCHHHHHHHHHHhc
Q 011645 427 ---TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 ---sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+..+ .+-.+++..|....
T Consensus 562 ~~~S~~~-~~s~~lf~kL~~~A 582 (625)
T KOG1707|consen 562 IHISSKT-LSSNELFIKLATMA 582 (625)
T ss_pred eeeccCC-CCCchHHHHHHHhh
Confidence 3232 33377777777665
No 377
>PRK14974 cell division protein FtsY; Provisional
Probab=97.46 E-value=0.00037 Score=72.12 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=52.5
Q ss_pred ceEEecCCcccccccc-cCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHL-GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~-~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+||||....... -..+ ..+.+ .-..|.+++|+|+.... +... ....|.. .-..--+|+||+|...
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL-~~i~~-~~~pd~~iLVl~a~~g~--d~~~----~a~~f~~--~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDEL-KKIVR-VTKPDLVIFVGDALAGN--DAVE----QAREFNE--AVGIDGVILTKVDADA 293 (336)
T ss_pred CEEEEECCCccCCcHHHHHHH-HHHHH-hhCCceEEEeeccccch--hHHH----HHHHHHh--cCCCCEEEEeeecCCC
Confidence 5899999998642110 0111 11112 23468899999997542 2222 2222221 1134578899999875
Q ss_pred hHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 407 ARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 407 ~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
.--.+-.+... ...++.++. ++++++++..
T Consensus 294 ~~G~~ls~~~~-~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGGAALSIAYV-IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CccHHHHHHHH-HCcCEEEEe--CCCChhhccc
Confidence 43322222222 134444544 8888877654
No 378
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00026 Score=69.05 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=46.0
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC----CCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
+.+.++|.||+.|--... +.-...++.+++-+.-+.+|...+ .+|..-+..++-.|.... ..+-|.|=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h-~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHH-DSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEecc-chHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence 468999999998843222 222334566666665555554433 344444444444444322 1468999999999
Q ss_pred CCcC
Q 011645 403 DLPE 406 (480)
Q Consensus 403 Dl~~ 406 (480)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9875
No 379
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.44 E-value=0.00052 Score=70.57 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=44.0
Q ss_pred ceEEecCCcccccccccCccchhh-----hhhhccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNF-----LRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~f-----l~~i~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
..+++.|-|+-+... +...| +...-+.+.++.|||+..... .+........+.. .=+||+||
T Consensus 92 d~IvIEttG~a~p~~----i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~--------AD~IvlnK 159 (318)
T PRK11537 92 DRLVIECTGMADPGP----IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY--------ADRILLTK 159 (318)
T ss_pred CEEEEECCCccCHHH----HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh--------CCEEEEec
Confidence 568888988865321 22222 122224688999999975321 1122223333432 23899999
Q ss_pred CCCcChHHHHHHHHHHHHhc
Q 011645 402 IDLPEARDRLQSLTEEILKI 421 (480)
Q Consensus 402 ~Dl~~~~e~~~~l~~~l~~~ 421 (480)
+|+.... +.+.+.+..+
T Consensus 160 ~Dl~~~~---~~~~~~l~~l 176 (318)
T PRK11537 160 TDVAGEA---EKLRERLARI 176 (318)
T ss_pred cccCCHH---HHHHHHHHHh
Confidence 9998753 3455555444
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=97.43 E-value=0.00072 Score=70.80 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=57.8
Q ss_pred hhhhhccCC-EEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHH-HHHHHhcC---
Q 011645 351 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIG--- 422 (480)
Q Consensus 351 fl~~i~~ad-~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l-~~~l~~~g--- 422 (480)
.++++...+ ++++|||+.+.. ..+..+|..+. .++|+++|+||+|+.... +.+..+ ....+..+
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 466777666 999999998632 12344555443 268999999999997532 223333 23334444
Q ss_pred --ceeeecccccCHHHHHHHHHHh
Q 011645 423 --CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 423 --~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+..+|++++.|++++++.+...
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999998643
No 381
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00022 Score=77.29 Aligned_cols=125 Identities=24% Similarity=0.281 Sum_probs=78.6
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC---CccCCC--ceeeec-----ccee-ccCC-CCCCccccCCceEEecCC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---DIADYP--FTTLMP-----NLGR-LDGD-PTLGAEKYSSEATLADLP 335 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~---~ia~~p--fTTl~p-----~~g~-v~~~-~~~~~~~~~~~~~l~DTP 335 (480)
.++.+..|+++-+--||||||-.++.-... .+.+.. .++.+. ..|. +.-. ....+. ..++.++|||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTP 112 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTP 112 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCC
Confidence 456778899999999999999999864322 221111 122111 1111 0000 000011 2379999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
|+++... ...+.++-.|..++|+|+..+...+. ..++..+..| ++|.+..+||+|...+
T Consensus 113 GHvDFT~-------EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~ry-----~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 113 GHVDFTF-------EVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKRY-----NVPRICFINKMDRMGA 171 (721)
T ss_pred CceeEEE-------EehhhhhhccCeEEEEEcccceehhh-HHHHHHHHhc-----CCCeEEEEehhhhcCC
Confidence 9987532 33456666788999999987654444 4455667765 5999999999999875
No 382
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0002 Score=74.49 Aligned_cols=127 Identities=23% Similarity=0.260 Sum_probs=79.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc---cC---------------CCceeeeccceeccCCCCCCccccCCceEEe
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~ 332 (480)
.+..|+++-.-.|||||...+|.--...+ ++ ..+.|+......++.. +.++.++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk--------g~rinli 107 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK--------GHRINLI 107 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc--------cceEeee
Confidence 45579999999999999988875322111 11 1122222211122211 2479999
Q ss_pred cCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HH
Q 011645 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 410 (480)
Q Consensus 333 DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~ 410 (480)
||||..+. ....-+.++--|.++.|+|++.....+.+..|++. .+ .+.|.+..+||||...+. ..
T Consensus 108 dtpghvdf-------~leverclrvldgavav~dasagve~qtltvwrqa-dk-----~~ip~~~finkmdk~~anfe~a 174 (753)
T KOG0464|consen 108 DTPGHVDF-------RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-DK-----FKIPAHCFINKMDKLAANFENA 174 (753)
T ss_pred cCCCcceE-------EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-cc-----cCCchhhhhhhhhhhhhhhhhH
Confidence 99999764 33344555667899999999987655555545432 22 468999999999987652 23
Q ss_pred HHHHHHHH
Q 011645 411 LQSLTEEI 418 (480)
Q Consensus 411 ~~~l~~~l 418 (480)
.+.+.+.+
T Consensus 175 vdsi~ekl 182 (753)
T KOG0464|consen 175 VDSIEEKL 182 (753)
T ss_pred HHHHHHHh
Confidence 44444444
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.36 E-value=0.00038 Score=66.62 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=50.0
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++++||||......+...--..+++.+ ..+-+++|+|++.. .+++..+..-.+.. .+-=+|++|+|....
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETAR 155 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSST
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCCC
Confidence 5899999997543211111111344444 46788999999864 23433333222221 233567999998765
Q ss_pred HHHHHHHHHHHHhcCceeeecccccCH
Q 011645 408 RDRLQSLTEEILKIGCDKVTSETELSS 434 (480)
Q Consensus 408 ~e~~~~l~~~l~~~g~~~~sa~t~~Gi 434 (480)
-. .+.......+.+-....+++.+
T Consensus 156 ~G---~~l~~~~~~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 156 LG---ALLSLAYESGLPISYITTGQRV 179 (196)
T ss_dssp TH---HHHHHHHHHTSEEEEEESSSST
T ss_pred cc---cceeHHHHhCCCeEEEECCCCh
Confidence 33 2333344444443333366655
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0006 Score=71.50 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=76.8
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccc-e---------e---ccCCCCCCc-------cc-
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNL-G---------R---LDGDPTLGA-------EK- 324 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~-g---------~---v~~~~~~~~-------~~- 324 (480)
+...--++|+|++||||||++..|...-... ....+.|.+... + . +........ ..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 3444578999999999999999997531100 011122222210 0 0 000000000 00
Q ss_pred cCCceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhC--CCCC-CCCEEEEE
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYL-ERPFIVVL 399 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~-~kp~ivV~ 399 (480)
-...++++||||..... ..+... .+.....+.-.++|++++... ++...+.+...... +... ...-=+|+
T Consensus 214 ~~~DlVLIDTaG~~~~d---~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRD---RTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred cCCCEEEEcCCCCCccc---HHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 02368999999975321 111111 122223345568999998642 33332222222211 0000 01346788
Q ss_pred eCCCCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 400 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 400 NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
+|+|....-- .+.......+.+-..+.+++.+.+-+.
T Consensus 289 TKlDEt~~~G---~~l~~~~~~~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 289 TKLDEASNLG---GVLDTVIRYKLPVHYVSTGQKVPENLY 325 (374)
T ss_pred eccccCCCcc---HHHHHHHHHCcCeEEEecCCCCCcccc
Confidence 9999875432 233333343444333336666655443
No 385
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.31 E-value=0.00025 Score=68.18 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhcc---CCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRR---TRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~---ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
.+.+.++|.||+||-.. ..-+-.++.+|+.+ --.++|++|+.-- +...-+.-.+..|...- ..+.|.|-|++|
T Consensus 97 eddylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi--~lE~P~INvlsK 173 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI--SLEVPHINVLSK 173 (273)
T ss_pred cCCEEEEeCCCeeEEee-cChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH--HhcCcchhhhhH
Confidence 46799999999998321 12234456677765 2356777776531 11111111222222111 146899999999
Q ss_pred CCCcCh
Q 011645 402 IDLPEA 407 (480)
Q Consensus 402 ~Dl~~~ 407 (480)
+||...
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 999864
No 386
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.29 E-value=0.0044 Score=57.58 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=54.1
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
..++++|||+.... .....+..+|.+++|+..+.. .......+.+.++.+ +.|+.+|+||+|...
T Consensus 93 ~d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCc
Confidence 37999999965431 234556789999999998853 455556666666643 467899999999764
Q ss_pred hHHHHHHHHHHHHhcCce
Q 011645 407 ARDRLQSLTEEILKIGCD 424 (480)
Q Consensus 407 ~~e~~~~l~~~l~~~g~~ 424 (480)
. ..+++.+.++..++.
T Consensus 158 ~--~~~~~~~~~~~~~~~ 173 (179)
T cd03110 158 E--IAEEIEDYCEEEGIP 173 (179)
T ss_pred c--hHHHHHHHHHHcCCC
Confidence 3 233455556655543
No 387
>PRK12288 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.0017 Score=67.52 Aligned_cols=84 Identities=23% Similarity=0.160 Sum_probs=60.1
Q ss_pred ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH--HHHHHHHHHHhcC--ceeeecccc
Q 011645 356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIG--CDKVTSETE 431 (480)
Q Consensus 356 ~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e--~~~~l~~~l~~~g--~~~~sa~t~ 431 (480)
..+|.+++|++......+..++.++..... .++|.++|+||+|+....+ ....+.+.+...+ +..+|+.++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 568999999998766556666655544432 4689999999999976432 3344445555554 457799999
Q ss_pred cCHHHHHHHHHHh
Q 011645 432 LSSEDAVKSLSTE 444 (480)
Q Consensus 432 ~Gi~~ll~~Ls~~ 444 (480)
.|++++++.|...
T Consensus 194 ~GideL~~~L~~k 206 (347)
T PRK12288 194 EGLEELEAALTGR 206 (347)
T ss_pred cCHHHHHHHHhhC
Confidence 9999999998754
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00083 Score=73.09 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=77.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccc-e---------e-cc--CCCCCCcc-------c-c
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNL-G---------R-LD--GDPTLGAE-------K-Y 325 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~-g---------~-v~--~~~~~~~~-------~-~ 325 (480)
+..-.|+|+|.+|+||||++..|...-... ......+.|+.. + . +. ........ . -
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 344579999999999999999987521000 001111222211 0 0 00 00000000 0 0
Q ss_pred CCceEEecCCccccccccc-CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 326 SSEATLADLPGLIEGAHLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~-~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
...++|+||||........ ..+ .++..... ...++|++++. ...++..+ ++.|.. ..+.-+|+||+|.
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL--~~L~aa~~-~a~lLVLpAts--s~~Dl~ei---i~~f~~---~~~~gvILTKlDE 496 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQL--NWLRAARQ-VTSLLVLPANA--HFSDLDEV---VRRFAH---AKPQGVVLTKLDE 496 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHH--HHHHHhhc-CCcEEEEECCC--ChhHHHHH---HHHHHh---hCCeEEEEecCcC
Confidence 2368999999985421110 001 12233222 34577778764 23343333 333332 2567899999998
Q ss_pred cChHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 405 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 405 ~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
... +-.+...+...+..-..+.+++.+.+=|.
T Consensus 497 t~~---lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 497 TGR---FGSALSVVVDHQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred ccc---hhHHHHHHHHhCCCEEEEeCCCCchhhhh
Confidence 653 23444444444444444447777744333
No 389
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00097 Score=68.21 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=80.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-----------ccC-----CCceeeeccceeccCCCCCCccccCCceEEecC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-----------IAD-----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-----------ia~-----~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DT 334 (480)
--.+|+-||...-|||||..+|+..-.. |.. .-+.|+ +..++.|... ...+.-.|+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DC 124 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDC 124 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCC
Confidence 3357999999999999999999753211 111 113343 3334444432 235677999
Q ss_pred CcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCC-CCEEEEEeCCCCcChHHHHH-
Q 011645 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEARDRLQ- 412 (480)
Q Consensus 335 PGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kp~ivV~NK~Dl~~~~e~~~- 412 (480)
||+-+. -.....-...-|..|+||.+++..-.+.-+.++ |.. + .+ ..+++.+||.|+.++.+.++
T Consensus 125 PGHADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LAr-Q---VGV~~ivvfiNKvD~V~d~e~leL 191 (449)
T KOG0460|consen 125 PGHADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLL--LAR-Q---VGVKHIVVFINKVDLVDDPEMLEL 191 (449)
T ss_pred CchHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHH-H---cCCceEEEEEecccccCCHHHHHH
Confidence 998542 111111224468999999999864444433332 111 1 23 44788889999996655433
Q ss_pred ---HHHHHHHhcCce
Q 011645 413 ---SLTEEILKIGCD 424 (480)
Q Consensus 413 ---~l~~~l~~~g~~ 424 (480)
++++.+..+++.
T Consensus 192 VEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 192 VEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHHHHHHHHcCCC
Confidence 456777777765
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.00093 Score=70.38 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=75.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC----CCCccCCCceeeeccc-eec------------cCCCCCCcc-------cc---
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA----KPDIADYPFTTLMPNL-GRL------------DGDPTLGAE-------KY--- 325 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~----~~~ia~~pfTTl~p~~-g~v------------~~~~~~~~~-------~~--- 325 (480)
..|+|+|++||||||++..|... ...+ .+.+.|+.. +.+ ......... .+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkV---glI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTV---GFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcE---EEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 57999999999999999999642 1111 111222211 000 000000000 00
Q ss_pred -CCceEEecCCcccccccccCccchhhhhhh--ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 326 -SSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 326 -~~~~~l~DTPGlie~a~~~~gl~~~fl~~i--~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
...++|+||||-..... ..-....+.+ ...+.+++|+|++.. ..+ +.+.++.|.. -..-=+|++|+
T Consensus 319 ~~~DvVLIDTaGRs~kd~---~lm~EL~~~lk~~~PdevlLVLsATtk--~~d---~~~i~~~F~~---~~idglI~TKL 387 (436)
T PRK11889 319 ARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEPDYICLTLSASMK--SKD---MIEIITNFKD---IHIDGIVFTKF 387 (436)
T ss_pred cCCCEEEEeCccccCcCH---HHHHHHHHHHhhcCCCeEEEEECCccC--hHH---HHHHHHHhcC---CCCCEEEEEcc
Confidence 12689999999744211 1111112222 235677889998642 223 3344455542 13356789999
Q ss_pred CCcChHHHHHHHHHHHHhcCceeeecccccCHHHHHHH
Q 011645 403 DLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 440 (480)
Q Consensus 403 Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~ 440 (480)
|....--. +.......+.+-...-+++.+.+=+..
T Consensus 388 DET~k~G~---iLni~~~~~lPIsyit~GQ~VPeDI~~ 422 (436)
T PRK11889 388 DETASSGE---LLKIPAVSSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred cCCCCccH---HHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 98764332 333333334443333366666554443
No 391
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0021 Score=66.51 Aligned_cols=141 Identities=24% Similarity=0.301 Sum_probs=77.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-------ccC-------CCceeeec---cce------eccCCCCCCcc----cc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-------IAD-------YPFTTLMP---NLG------RLDGDPTLGAE----KY 325 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-------ia~-------~pfTTl~p---~~g------~v~~~~~~~~~----~~ 325 (480)
.+|+++|-..+|||||+-.|+..+.. +.- ..+.|-.. .+| .++|....... .-
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 36899999999999999999864311 000 00111100 111 11111100000 00
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
.+-++++|.+|....-+... +....+ ..|..++||.+...-.+..-+.+- .+.. .+.|+.++++|+|+.
T Consensus 248 SKlvTfiDLAGh~kY~~TTi---~gLtgY--~Ph~A~LvVsA~~Gi~~tTrEHLg-l~~A-----L~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTI---HGLTGY--TPHFACLVVSADRGITWTTREHLG-LIAA-----LNIPFFVLVTKMDLV 316 (591)
T ss_pred cceEEEeecccchhhheeee---eecccC--CCceEEEEEEcCCCCccccHHHHH-HHHH-----hCCCeEEEEEeeccc
Confidence 12378999999855322110 001111 247778888888765555444332 2222 369999999999998
Q ss_pred Ch---HHHHHHHHHHHHhcCce
Q 011645 406 EA---RDRLQSLTEEILKIGCD 424 (480)
Q Consensus 406 ~~---~e~~~~l~~~l~~~g~~ 424 (480)
.. +...+++...+.+.|..
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~ 338 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCT 338 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCcc
Confidence 76 34455666666666654
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.18 E-value=0.0018 Score=59.97 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=38.8
Q ss_pred ceEEecCCccccccccc-CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~-~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++++||||........ ..+ ..+ ......+.+++|+|+... .+..+.+ .++... .+ ..-+|+||+|...
T Consensus 84 d~viiDt~g~~~~~~~~l~~l-~~l-~~~~~~~~~~lVv~~~~~--~~~~~~~-~~~~~~----~~-~~~viltk~D~~~ 153 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEEL-KKI-KRVVKPDEVLLVVDAMTG--QDAVNQA-KAFNEA----LG-ITGVILTKLDGDA 153 (173)
T ss_pred CEEEEECcccchhhHHHHHHH-HHH-HhhcCCCeEEEEEECCCC--hHHHHHH-HHHHhh----CC-CCEEEEECCcCCC
Confidence 58999999975310000 011 111 222458999999998632 3333333 222211 12 3577889999876
Q ss_pred hH
Q 011645 407 AR 408 (480)
Q Consensus 407 ~~ 408 (480)
..
T Consensus 154 ~~ 155 (173)
T cd03115 154 RG 155 (173)
T ss_pred Cc
Confidence 43
No 393
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.00095 Score=71.27 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC--Cc-cCCCceeeeccce-------e------ccCCCCCCccc--------cCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPNLG-------R------LDGDPTLGAEK--------YSSE 328 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~--~i-a~~pfTTl~p~~g-------~------v~~~~~~~~~~--------~~~~ 328 (480)
..|+|+|++||||||++..|...-. .- ....+.|.++... . +.......... -...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4689999999999999888754211 00 0111222333110 0 00000000000 0236
Q ss_pred eEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH
Q 011645 329 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 408 (480)
Q Consensus 329 ~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~ 408 (480)
++|+||||...........-..+++......-.++|++++.. ..++. +.+..|.. -.+.-+|++|+|.....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~---~~~~~f~~---~~~~~vI~TKlDet~~~ 373 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLK---DIYKHFSR---LPLDGLIFTKLDETSSL 373 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHH---HHHHHhCC---CCCCEEEEecccccccc
Confidence 899999998532111100111223311123456788888642 23333 33444432 12336889999986543
Q ss_pred HHHHHHHHHHHhcCceeeecccccCHHHHHHH
Q 011645 409 DRLQSLTEEILKIGCDKVTSETELSSEDAVKS 440 (480)
Q Consensus 409 e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~ 440 (480)
..+...+...+++-....+++.+.+=+..
T Consensus 374 ---G~i~~~~~~~~lPv~yit~Gq~VpdDl~~ 402 (424)
T PRK05703 374 ---GSILSLLIESGLPISYLTNGQRVPDDIKV 402 (424)
T ss_pred ---cHHHHHHHHHCCCEEEEeCCCCChhhhhh
Confidence 24455555556665555588876444443
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0012 Score=69.21 Aligned_cols=153 Identities=13% Similarity=0.051 Sum_probs=74.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccce-e---c-------cCC--CCCCccc-------c----
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG-R---L-------DGD--PTLGAEK-------Y---- 325 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g-~---v-------~~~--~~~~~~~-------~---- 325 (480)
...-|+|+|+.|+||||++..|...-... ....+.|.|+... . + ... ....... +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 34568999999999999999997421000 0111222222211 0 0 000 0000000 0
Q ss_pred CCceEEecCCccccccccc-CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 326 SSEATLADLPGLIEGAHLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~-~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
...++|+||||......+. ..+. .+... -..+.+++|+++.. ...+ +.+.+..|.. -..--+|++|+|.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~-~l~~~-~~p~~~~LVLsag~--~~~d---~~~i~~~f~~---l~i~glI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEIS-AYTDV-VHPDLTCFTFSSGM--KSAD---VMTILPKLAE---IPIDGFIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHH-HHhhc-cCCceEEEECCCcc--cHHH---HHHHHHhcCc---CCCCEEEEEcccC
Confidence 1378999999984321100 0011 12222 23577788887742 2222 3334444442 2345778999998
Q ss_pred cChHHHHHHHHHHHHhcCceeeecccccCHHH
Q 011645 405 PEARDRLQSLTEEILKIGCDKVTSETELSSED 436 (480)
Q Consensus 405 ~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ 436 (480)
...-- .+.......+.+-....+++.+.+
T Consensus 355 T~~~G---~~Lsv~~~tglPIsylt~GQ~Vpd 383 (407)
T PRK12726 355 TTRIG---DLYTVMQETNLPVLYMTDGQNITE 383 (407)
T ss_pred CCCcc---HHHHHHHHHCCCEEEEecCCCCCc
Confidence 75432 333334444444333336666655
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0012 Score=74.70 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=74.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-c--CCCceeeeccc-ee---------ccCCCCC---Ccc--------ccCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-A--DYPFTTLMPNL-GR---------LDGDPTL---GAE--------KYSSE 328 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a--~~pfTTl~p~~-g~---------v~~~~~~---~~~--------~~~~~ 328 (480)
--|+|||+.||||||++..|...-... . .....|.|... +. +..-+.. ... .-...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 358999999999999999998542110 0 01111111110 00 0000000 000 00236
Q ss_pred eEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 329 ATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 329 ~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
++|+||||..... ..+... .+......+-+++|+|++.. . +.+.+.++.|.....-.+-=+|++|+|...
T Consensus 266 ~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~--~---~~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH--G---DTLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc--H---HHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 8999999964321 111111 11222345667999999842 2 333344455542111124467899999875
Q ss_pred hHHHHHHHHHHHHhcCceeeecccccCH
Q 011645 407 ARDRLQSLTEEILKIGCDKVTSETELSS 434 (480)
Q Consensus 407 ~~e~~~~l~~~l~~~g~~~~sa~t~~Gi 434 (480)
.-- .+.......+++-..+-+++.+
T Consensus 338 ~~G---~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 338 HLG---PALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred Ccc---HHHHHHHHHCCCeEEEecCCCC
Confidence 432 2333333444443334477777
No 396
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.12 E-value=0.0012 Score=68.96 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=55.5
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHH-HHHHHHhcC-----cee
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIG-----CDK 425 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~-l~~~l~~~g-----~~~ 425 (480)
...++++++|+|+.+... .|..++..+. ..+|+++|+||+|+.... +.+.. +.+.+...+ +..
T Consensus 61 ~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEG-----SLIPELKRFV---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred ccCCcEEEEEEECcCCCC-----CccHHHHHHh---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 467899999999976431 1334444432 258999999999987532 22222 233445554 457
Q ss_pred eecccccCHHHHHHHHHHh
Q 011645 426 VTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+|++++.|++++++.+.+.
T Consensus 133 vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 8999999999999998643
No 397
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.12 E-value=0.00068 Score=69.59 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=50.9
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC----------ChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+||++|.. .....|..+++.+++++||+|.++.+ ...+...+.+++-. .+.+.+.|+++
T Consensus 162 ~~~~~DvgGq~-------~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill 233 (317)
T cd00066 162 KFRMFDVGGQR-------SERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIIL 233 (317)
T ss_pred EEEEECCCCCc-------ccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEE
Confidence 68899999983 35677888999999999999999742 12222223333322 23456799999
Q ss_pred EEeCCCCcC
Q 011645 398 VLNKIDLPE 406 (480)
Q Consensus 398 V~NK~Dl~~ 406 (480)
++||.|+..
T Consensus 234 ~~NK~D~f~ 242 (317)
T cd00066 234 FLNKKDLFE 242 (317)
T ss_pred EccChHHHH
Confidence 999999874
No 398
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.06 E-value=0.0062 Score=54.70 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=60.1
Q ss_pred EecCCCCChHHHHHHHhcCCCCcc-CCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhh
Q 011645 277 LVGLPNAGKSTLLAAITHAKPDIA-DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 355 (480)
Q Consensus 277 lvG~pNaGKSSLlnaLt~~~~~ia-~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i 355 (480)
.-+.+++||||+--.|...-...+ ..-....++....+. ..++++|+|+... ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~-----------yd~VIiD~p~~~~---------~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD-----------YDYIIIDTGAGIS---------DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC-----------CCEEEEECCCCCC---------HHHHHHH
Confidence 457889999999777753311000 000011122222111 2789999998543 2234556
Q ss_pred ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 356 ~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
..||.+++|++.+... ........+++.... ...++.+|+|+++..
T Consensus 65 ~~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence 7799999999987432 333333444554321 245688999999754
No 399
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0016 Score=69.13 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=55.1
Q ss_pred ceEEecCCcccccccccCccchhhhhhhc--cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
.++++||||..........--..+++.+. ...-.++|+|++... ++ +.+.+..|.. -.+-=+|++|+|..
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~---~~~~~~~f~~---~~~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HH---TLTVLKAYES---LNYRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HH---HHHHHHHhcC---CCCCEEEEEcccCC
Confidence 68999999985432211101112233332 134578899988542 22 3344445531 23456789999987
Q ss_pred ChHHHHHHHHHHHHhcCceeeecccccCHHHHHHHHH
Q 011645 406 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 406 ~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
..-- .+.......+.+-.....++.+.+=+...+
T Consensus 373 ~~~G---~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~ 406 (432)
T PRK12724 373 DFLG---SFLELADTYSKSFTYLSVGQEVPFDILNAT 406 (432)
T ss_pred CCcc---HHHHHHHHHCCCEEEEecCCCCCCCHHHhh
Confidence 5432 233334444444444446766665555444
No 400
>PRK01889 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.0031 Score=65.87 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=54.0
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcCceeeecccccC
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGCDKVTSETELS 433 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g~~~~sa~t~~G 433 (480)
+..+|.+++|+++........++.++..++. .+.+.++|+||+||.+..+ ..+.+........+..+++.++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence 4678999999999643333333444333333 3567799999999976432 233333331123445789999999
Q ss_pred HHHHHHHHHH
Q 011645 434 SEDAVKSLST 443 (480)
Q Consensus 434 i~~ll~~Ls~ 443 (480)
++++..++..
T Consensus 185 l~~L~~~L~~ 194 (356)
T PRK01889 185 LDVLAAWLSG 194 (356)
T ss_pred HHHHHHHhhc
Confidence 9999998863
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0022 Score=68.22 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=78.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeecc----------ceeccCCCC---CCcc-------cc-C
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPN----------LGRLDGDPT---LGAE-------KY-S 326 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~----------~g~v~~~~~---~~~~-------~~-~ 326 (480)
..-.|+|||.+|+||||++..|.+..... ......|.+.. .+.+..-+. .... .+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44579999999999999999887531100 00001111110 000000000 0000 00 2
Q ss_pred CceEEecCCcccccccccCccchhhhhhhc---cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~---~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
..++++||+|...... .+.. -+..+. ...-.++|+|++.. .++ +.+.+..|.. -..-=+|++|.|
T Consensus 270 ~d~VLIDTaGrsqrd~---~~~~-~l~~l~~~~~~~~~~LVl~at~~--~~~---~~~~~~~f~~---~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ---MLAE-QIAMLSQCGTQVKHLLLLNATSS--GDT---LDEVISAYQG---HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcchH---HHHH-HHHHHhccCCCceEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeee
Confidence 3589999999754211 1111 122222 23457888998843 233 3344555542 234567899999
Q ss_pred CcChHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 404 LPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 404 l~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
..... -.+.......+.+-....+++.+.+=+.
T Consensus 338 Et~~~---G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 338 EAASL---GIALDAVIRRKLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCCCc---cHHHHHHHHhCCCEEEEECCCCchhhhh
Confidence 87543 2334444455555444557887744333
No 402
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.94 E-value=0.0014 Score=68.07 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=51.2
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC----------ChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+||+.|.. ..+..|..+++.+++++||+|+++.+ ..++...+.+.+-. .+.+.+.|+++
T Consensus 185 ~~~~~DvgGqr-------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~piil 256 (342)
T smart00275 185 FFRMFDVGGQR-------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSIIL 256 (342)
T ss_pred EEEEEecCCch-------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEEE
Confidence 57899999983 34567888999999999999999732 22232333333332 24567799999
Q ss_pred EEeCCCCcC
Q 011645 398 VLNKIDLPE 406 (480)
Q Consensus 398 V~NK~Dl~~ 406 (480)
++||.|+..
T Consensus 257 ~~NK~D~~~ 265 (342)
T smart00275 257 FLNKIDLFE 265 (342)
T ss_pred EEecHHhHH
Confidence 999999874
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.0021 Score=69.55 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-Ccc--CCCceeeecc-------c---eeccCCCCC---Cc-------ccc-CC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIA--DYPFTTLMPN-------L---GRLDGDPTL---GA-------EKY-SS 327 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia--~~pfTTl~p~-------~---g~v~~~~~~---~~-------~~~-~~ 327 (480)
.--++|||++||||||++..|...-. ... .....+.|+. + +.+..-+.. .. ..+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 34699999999999999999985321 000 0111222221 0 000000000 00 000 13
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++++||+|....... ......++.......-.++|+|++... ..+.+.+..|.. ....-+|+||+|....
T Consensus 336 d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~~-----~~l~~i~~~f~~---~~~~g~IlTKlDet~~ 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSHG-----DTLNEVVQAYRG---PGLAGCILTKLDEAAS 406 (484)
T ss_pred CeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCcH-----HHHHHHHHHhcc---CCCCEEEEeCCCCccc
Confidence 5889999996432110 000111222221122367888987432 334455555553 2345677999997654
Q ss_pred HHHHHHHHHHHHhcCceeeecccccCH
Q 011645 408 RDRLQSLTEEILKIGCDKVTSETELSS 434 (480)
Q Consensus 408 ~e~~~~l~~~l~~~g~~~~sa~t~~Gi 434 (480)
. -.+.......+++-..+-+++.+
T Consensus 407 ~---G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 407 L---GGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred c---hHHHHHHHHHCCCeEEEecCCCC
Confidence 2 33344444445554444578887
No 404
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0036 Score=66.10 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=53.9
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++++||||........-.--..++..+....-.++|+|++.. ..+ +.+.+..|.. -.+-=+|++|.|....
T Consensus 256 DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~---~~~~~~~~~~---~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 256 DLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSD---VKEIFHQFSP---FSYKTVIFTKLDETTC 327 (388)
T ss_pred CEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeccCCCc
Confidence 6899999997542111000011223333222357899999864 233 3345555542 1345788999998754
Q ss_pred HHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 408 RDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 408 ~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
.- .+.......+.+-....+++.+.+=+.
T Consensus 328 ~G---~~l~~~~~~~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 328 VG---NLISLIYEMRKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred ch---HHHHHHHHHCCCEEEEeCCCCChhhhh
Confidence 33 233334444444444457887744333
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.90 E-value=0.0034 Score=67.23 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=39.5
Q ss_pred ceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 328 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
.++|+||||..... ..+-.+ .+..+..+|.+++|+|++.. .+.+ +..+.|...+ ...-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d---~~lm~El~~l~~~~~pdevlLVvda~~g--q~av----~~a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE---EDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAK----NQAKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch---HHHHHHHHHHHHHhcccceeEEEecccc--HHHH----HHHHHHHhcC--CCCEEEEecccCC
Confidence 68999999974321 111111 12334468899999998764 2222 2333343211 2346789999976
Q ss_pred Ch
Q 011645 406 EA 407 (480)
Q Consensus 406 ~~ 407 (480)
..
T Consensus 246 a~ 247 (437)
T PRK00771 246 AK 247 (437)
T ss_pred Cc
Confidence 43
No 406
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0021 Score=64.98 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=66.7
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.+.++|.||+.- +....|.-..--|..++++-+...-|..+...-+..++.+. -+.++++-||+|+...
T Consensus 126 HVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 126 HVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----hceEEEEechhhhhhH
Confidence 477999999732 12222333333466777776655332222222222233221 2678999999999865
Q ss_pred HH---HHHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhcCcccc
Q 011645 408 RD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 408 ~e---~~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
.+ ..+.+..+++. .++.+++++..-+++-+.+.+..+......
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 43 33444444432 255688999999999999999888765433
No 407
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.86 E-value=0.005 Score=64.05 Aligned_cols=160 Identities=21% Similarity=0.138 Sum_probs=87.8
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCC--------------ceeeeccceeccCCCCCC---------cccc-
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--------------FTTLMPNLGRLDGDPTLG---------AEKY- 325 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p--------------fTTl~p~~g~v~~~~~~~---------~~~~- 325 (480)
+.-.-|+..|..++|||||+-+|+..++.-.+-. +-|-+...+.+.+++... ....
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 3445699999999999999999986544322111 112222222222221100 0000
Q ss_pred -----CCceEEecCCcccccccccCccchhhhhhh--ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEE
Q 011645 326 -----SSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 398 (480)
Q Consensus 326 -----~~~~~l~DTPGlie~a~~~~gl~~~fl~~i--~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV 398 (480)
+.-+.++||-|+.. .-+..++-+ ...|..++|+-+.+..+.-.-+.+--.+. .+.|+++|
T Consensus 195 vv~~aDklVsfVDtvGHEp-------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEP-------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCccH-------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEE
Confidence 12267889998732 122223322 45788899998887644333232222222 36899999
Q ss_pred EeCCCCcChHH---HHHHHHHHHHhc---------------------------CceeeecccccCHHHHHHHHH
Q 011645 399 LNKIDLPEARD---RLQSLTEEILKI---------------------------GCDKVTSETELSSEDAVKSLS 442 (480)
Q Consensus 399 ~NK~Dl~~~~e---~~~~l~~~l~~~---------------------------g~~~~sa~t~~Gi~~ll~~Ls 442 (480)
++|+|+.+++. ..+++.+.+... ++..+|+.+++|++-+.+.+.
T Consensus 262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 99999986532 222333222211 233667788888877666554
No 408
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.83 E-value=0.0042 Score=53.07 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=52.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|..++|||+|+.++....... .+ + . +..+. ...| .
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~-~-~-~t~~~----------------~~~~------------------~ 41 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VP-T-V-FTIGI----------------DVYD------------------P 41 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cC-c-e-ehhhh----------------hhcc------------------c
Confidence 379999999999999999996543211 01 0 0 11110 0001 1
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
...+.++.++.|.|.....+.+.. +...+..... .+.|.+++.||.|+..
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k--~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK--SDLPILVGGNRDVLEE 91 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC--CCCcEEEEeechhhHh
Confidence 123456777777887765544332 3344443321 3467899999999843
No 409
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.82 E-value=0.016 Score=59.11 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCCEEEEEeCCCCcCh--------HHHHHHHHHHHHh----cC--ceeeecccccCHHHHHHHHHHhc
Q 011645 391 LERPFIVVLNKIDLPEA--------RDRLQSLTEEILK----IG--CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 391 ~~kp~ivV~NK~Dl~~~--------~e~~~~l~~~l~~----~g--~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.|++||++|||.... .+.+..+...+.+ +| +.+++++...+++-+...|..+.
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 36899999999998431 2333333333333 34 34789999999998888887664
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.0045 Score=62.25 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=77.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccc-ee----------ccCC--CCCCc----------cc-cC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNL-GR----------LDGD--PTLGA----------EK-YS 326 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~-g~----------v~~~--~~~~~----------~~-~~ 326 (480)
..+|+|+|.+++||||++..|...-.. .....+.+.++.. +. +... ..... .. -.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 358999999999999999988654110 0001111111110 00 0000 00000 00 01
Q ss_pred CceEEecCCccccccccc-CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 327 SEATLADLPGLIEGAHLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~-~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
..++++||||......+. +.+ ..+++.. ..+.+++|+|++.. .++ +.+.++.|.. -.+-=+|++|.|..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el-~~~~~~~-~~~~~~LVl~a~~~--~~d---~~~~~~~f~~---~~~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEM-IETMGQV-EPDYICLTLSASMK--SKD---MIEIITNFKD---IHIDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHH-HHHHhhh-CCCeEEEEEcCccC--HHH---HHHHHHHhCC---CCCCEEEEEeecCC
Confidence 368999999975321110 001 1223322 34678999998742 122 3344555553 24456789999987
Q ss_pred ChHHHHHHHHHHHHhcCceeeecccccCHHHHHHH
Q 011645 406 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 440 (480)
Q Consensus 406 ~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~ 440 (480)
..-- .+.......+.+-....+++.+.+=+..
T Consensus 225 ~~~G---~~l~~~~~~~~Pi~~it~Gq~vp~di~~ 256 (270)
T PRK06731 225 ASSG---ELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred CCcc---HHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 6432 2333333344443333377766654443
No 411
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0028 Score=67.63 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=79.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCcc-C----CCcee--eeccceeccCCCCC-------------------Ccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-D----YPFTT--LMPNLGRLDGDPTL-------------------GAE 323 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-~----~pfTT--l~p~~g~v~~~~~~-------------------~~~ 323 (480)
+.+..+.++-...-|||||..+|......|+ . ..||. .+.+..-+.+.... ...
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3445567777888999999999975433331 2 22221 12222222111000 001
Q ss_pred ccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 324 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 324 ~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
.| -+.++|.||+.+..+ +....++-+|..|+|||.-+..-.+.-..|++.+... -+| ++|+||+|
T Consensus 97 ~F--LiNLIDSPGHVDFSS-------EVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-----IkP-vlv~NK~D 161 (842)
T KOG0469|consen 97 GF--LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-----IKP-VLVMNKMD 161 (842)
T ss_pred ce--eEEeccCCCcccchh-------hhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh-----ccc-eEEeehhh
Confidence 11 367999999987543 3445667789999999998876666555666666641 255 67799999
Q ss_pred Cc------ChHHHHHHHHHHHHh
Q 011645 404 LP------EARDRLQSLTEEILK 420 (480)
Q Consensus 404 l~------~~~e~~~~l~~~l~~ 420 (480)
.. ..++..+.++...+.
T Consensus 162 RAlLELq~~~EeLyqtf~R~VE~ 184 (842)
T KOG0469|consen 162 RALLELQLSQEELYQTFQRIVEN 184 (842)
T ss_pred HHHHhhcCCHHHHHHHHHHHHhc
Confidence 53 234444455554443
No 412
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.74 E-value=0.01 Score=55.59 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=36.6
Q ss_pred CEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc
Q 011645 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 421 (480)
Q Consensus 359 d~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~ 421 (480)
|++++|+|+..+....+ ..+.+.+.. ...++|+++|+||+|+.+. +.+..+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l---~~~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQ---AGGNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHh---ccCCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 78999999987533322 223333211 0135899999999999764 4455666666554
No 413
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.74 E-value=0.0048 Score=60.44 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=28.9
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
++.+|++|+|+|.+... ....+.+.+.-. ++--+++.+|+||+|..
T Consensus 153 ~~~vD~vivVvDpS~~s-l~taeri~~L~~----elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKS-LRTAERIKELAE----ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHH-HHHHHHHHHHHH----HhCCceEEEEEeeccch
Confidence 46799999999998532 222222222111 22128999999999865
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0048 Score=72.71 Aligned_cols=136 Identities=24% Similarity=0.273 Sum_probs=70.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc----ccCcc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGKGL 347 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~----~~~gl 347 (480)
++=-.+||+||+||||++.----.-+ ++....-.-....|+-+.+. -|.+..+++||.|-.-..+ .++..
T Consensus 125 LPWy~viG~pgsGKTtal~~sgl~Fp-l~~~~~~~~~~~~gT~~cdw-----wf~deaVlIDtaGry~~q~s~~~~~~~~ 198 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNSGLQFP-LAEQMGALGLAGPGTRNCDW-----WFTDEAVLIDTAGRYITQDSADEVDRAE 198 (1188)
T ss_pred CCceEEecCCCCCcchHHhcccccCc-chhhhccccccCCCCcccCc-----ccccceEEEcCCcceecccCcchhhHHH
Confidence 34457899999999999876543222 21111000011111111111 2456889999999432211 11111
Q ss_pred chhhh------hhhccCCEEEEecccCCC---CChhh---HHHHH---HHHHhhCCCCCCCCEEEEEeCCCCcCh-HHHH
Q 011645 348 GRNFL------RHLRRTRLLVHVIDAAAE---NPVND---YRTVK---EELRMYNPDYLERPFIVVLNKIDLPEA-RDRL 411 (480)
Q Consensus 348 ~~~fl------~~i~~ad~ll~VvD~s~~---~~~~~---~~~l~---~eL~~~~~~l~~kp~ivV~NK~Dl~~~-~e~~ 411 (480)
-..|+ |..+..+.||+-+|+++- +..+. ...|+ +||..... ...|+.+++||+|+... ++.+
T Consensus 199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~GF~efF 276 (1188)
T COG3523 199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLPGFEEFF 276 (1188)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccccHHHHH
Confidence 11121 223447889999988762 22222 22233 34433222 46899999999999864 3433
Q ss_pred HHHH
Q 011645 412 QSLT 415 (480)
Q Consensus 412 ~~l~ 415 (480)
..+.
T Consensus 277 ~~l~ 280 (1188)
T COG3523 277 GSLN 280 (1188)
T ss_pred hccC
Confidence 3333
No 415
>PRK01889 GTPase RsgA; Reviewed
Probab=96.72 E-value=0.001 Score=69.49 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP 297 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~ 297 (480)
.-.++|+|.+|+|||||+|+|.+...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 34799999999999999999997543
No 416
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.65 E-value=0.018 Score=62.28 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCCEEEEEeCCCCcCh--------HHHHHHHHH----HHHhcC--ceeeecccccCHHHHHHHHHHhc
Q 011645 392 ERPFIVVLNKIDLPEA--------RDRLQSLTE----EILKIG--CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 392 ~kp~ivV~NK~Dl~~~--------~e~~~~l~~----~l~~~g--~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.|++||++|+|.... ++.++.+.. .+-.+| +.+++++...+++-+...|..++
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 4799999999997531 222333333 333445 45778888889988887776554
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.59 E-value=0.0085 Score=63.06 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=76.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC--Cc-cCCCceeeeccc-eecc----C-----CCC---CCcccc--------CC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPNL-GRLD----G-----DPT---LGAEKY--------SS 327 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~--~i-a~~pfTTl~p~~-g~v~----~-----~~~---~~~~~~--------~~ 327 (480)
..-|+|||++||||||-|..|...-. .. -...+.|.|... |.+. | -+. .....+ ..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45689999999999999998865422 11 223345554321 1110 0 000 000000 13
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.++++||.|--....+...=-.++.... ...-..+|++++.. .++ +.+.+..|.. .+ .--++++|+|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~d---lkei~~~f~~--~~-i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK--YED---LKEIIKQFSL--FP-IDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHH---HHHHHHHhcc--CC-cceeEEEcccccCc
Confidence 6899999996432111100011233333 23445666777632 344 4444555542 11 23567899998765
Q ss_pred HHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 408 RDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 408 ~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
-- .+...+.....+-.....++.+.+=+.
T Consensus 354 ~G---~~~s~~~e~~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 354 LG---NLFSLMYETRLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred hh---HHHHHHHHhCCCeEEEeCCCCCCchhh
Confidence 33 333334433333333336666555444
No 418
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.0076 Score=59.24 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=68.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC-CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
++|.+.|.--+||||+-......- |..+-+--.|-.+....+... | -.+.+||.||+...-...- .+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s-------f-inf~v~dfPGQ~~~Fd~s~----D~ 95 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS-------F-INFQVWDFPGQMDFFDPSF----DY 95 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh-------h-cceEEeecCCccccCCCcc----CH
Confidence 569999999999999877765432 111111112222222222110 1 2689999999986432211 22
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHH-hhCCCCCCCCEEEEEeCCCCcCh
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~-~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
..-.+.+-+++||+|+.+. -.+.+..|...+. .|.- ..+..+=|.+-|+|-+..
T Consensus 96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCch
Confidence 3445678999999998742 1222222222222 2221 134667888999997764
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=96.55 E-value=0.006 Score=65.29 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.8
Q ss_pred cceEEEecCCCCChHHHHHHHh
Q 011645 272 VADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt 293 (480)
..-|.++|.+|+||||++..|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 3568999999999999666554
No 420
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.53 E-value=0.0055 Score=53.08 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEecCCCCChHHHHHHHhcC
Q 011645 275 VGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~ 295 (480)
|.|.|+||+|||||++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999999865
No 421
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.50 E-value=0.0045 Score=57.39 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=31.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceec
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 314 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v 314 (480)
-|+|+|++|||||||++.|.+..+.+ .....||..|..+.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~ 44 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc
Confidence 48999999999999999999865433 334567777766654
No 422
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.43 E-value=0.014 Score=57.20 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=59.4
Q ss_pred ceEEecCCcccccccccCccchhhh-hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFL-RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+||+|.-. .+. ..+.++|++|.=.-.+..|..+..+.+....+.....-...|.-|++|++.-..
T Consensus 85 d~VlvDleG~as----------~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~ 154 (231)
T PF07015_consen 85 DFVLVDLEGGAS----------ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR 154 (231)
T ss_pred CEEEEeCCCCCc----------hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch
Confidence 589999999632 122 345789998887666654444433333222222111224689999999998443
Q ss_pred hHHHHHHHHHHHHhcCceeeecccccCHHHHHH
Q 011645 407 ARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 439 (480)
Q Consensus 407 ~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~~ll~ 439 (480)
.......+.+.+..+++..+.......+.+++.
T Consensus 155 ~~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 155 LTRAQRIISEQLESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hhHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 323333445556667766666666655555554
No 423
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.40 E-value=0.016 Score=49.69 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=58.4
Q ss_pred ecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhcc
Q 011645 278 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 357 (480)
Q Consensus 278 vG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ 357 (480)
=+..++||||+...|..+-.....+. + ..++.++. ....++++|||+... ......+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~--~-----~l~d~d~~-----~~~D~IIiDtpp~~~---------~~~~~~l~~ 64 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRR--V-----LLVDLDLQ-----FGDDYVVVDLGRSLD---------EVSLAALDQ 64 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCc--E-----EEEECCCC-----CCCCEEEEeCCCCcC---------HHHHHHHHH
Confidence 35679999998888765421110111 1 12222221 123689999998643 223456778
Q ss_pred CCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 358 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 358 ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
||.+++|++.+.. .......+.+.++..... ....+.+|+|+
T Consensus 65 aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 65 ADRVFLVTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred cCeEEEEecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 9999999988753 344445555555543321 13457788885
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.35 E-value=0.013 Score=62.61 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred ceEEecCCcccccccc-cCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHL-GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~-~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+||||....... -..+. . +...-..+-+++|+|+... ++......++.. .+ ...=+|+||+|...
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~-~-i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~---~v--~i~giIlTKlD~~~ 253 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELA-A-IKEILNPDEILLVVDAMTG---QDAVNTAKTFNE---RL--GLTGVVLTKLDGDA 253 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHH-H-HHHhhCCceEEEEEeccch---HHHHHHHHHHHh---hC--CCCEEEEeCccCcc
Confidence 5899999996431110 00111 1 2223347888999998743 222222223321 11 23567799999654
No 425
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.31 E-value=0.051 Score=49.80 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=43.7
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+|||+-... .+...+..+|.+++|++.+... ......+.+.++... .....+|+|++|...
T Consensus 64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEALG----IKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHcC----CceEEEEEeCCcccc
Confidence 6899999975432 2345567899999999987543 344444555555421 245789999998654
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.31 E-value=0.022 Score=46.09 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=45.8
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhhh
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~ 354 (480)
+++.|.+|+||||+...|...-.+ ..+. ...+ +.++++|+|+....... .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~-------v~~~------------~d~iivD~~~~~~~~~~------~~~~~ 55 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR-------VLLI------------DDYVLIDTPPGLGLLVL------LCLLA 55 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe-------EEEE------------CCEEEEeCCCCccchhh------hhhhh
Confidence 678899999999999998754211 0111 1111 15799999987543110 01345
Q ss_pred hccCCEEEEecccCCCC
Q 011645 355 LRRTRLLVHVIDAAAEN 371 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~ 371 (480)
+..+|.++++++.....
T Consensus 56 ~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 56 LLAADLVIIVTTPEALA 72 (99)
T ss_pred hhhCCEEEEecCCchhh
Confidence 56789999999987644
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.26 E-value=0.0061 Score=54.79 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=30.2
Q ss_pred EEEecCCCCChHHHHHHHhcCCCC--ccCCCceeeeccceecc
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLD 315 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~--ia~~pfTTl~p~~g~v~ 315 (480)
|+|+|++|+|||||++.|....+. ....+.||..|..+.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~ 44 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVD 44 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccC
Confidence 689999999999999999976332 23445577777666543
No 428
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.18 E-value=0.0061 Score=57.80 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=35.5
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCC
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 317 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~ 317 (480)
|+|+|++|||||||+++|....+.+ ...+.||..|..|.+++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~ 50 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGK 50 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCc
Confidence 8899999999999999998876544 456789998888877653
No 429
>PRK13695 putative NTPase; Provisional
Probab=96.13 E-value=0.08 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++|+|+|.+++|||||+..|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999997643
No 430
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.11 E-value=0.005 Score=54.33 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||+++|++..
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 355667777789999999999999999999863
No 431
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.08 E-value=0.026 Score=47.47 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=44.5
Q ss_pred EEEec-CCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 275 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 275 V~lvG-~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
|++.| ..|+||||+...|...-.. .. .....++.++. | .++++|+|+... ..+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~-------~~vl~~d~d~~-----~--d~viiD~p~~~~---------~~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RG-------KRVLLIDLDPQ-----Y--DYIIIDTPPSLG---------LLTRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CC-------CcEEEEeCCCC-----C--CEEEEeCcCCCC---------HHHHH
Confidence 45666 6799999998887643211 11 11112222221 2 689999998643 23345
Q ss_pred hhccCCEEEEecccCC
Q 011645 354 HLRRTRLLVHVIDAAA 369 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~ 369 (480)
.+..||.++++++.+.
T Consensus 58 ~l~~ad~viv~~~~~~ 73 (104)
T cd02042 58 ALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHCCEEEEeccCCH
Confidence 6677999999999874
No 432
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.86 E-value=0.019 Score=60.03 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=49.4
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 421 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~ 421 (480)
....|.+.++.+|+||.|+|+.++......+.=...+... .++..|+|+||+|+.. .+.++.|...|...
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~----gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH----GNKKLILVLNKIDLVP-REVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc----CCceEEEEeehhccCC-HHHHHHHHHHHHhh
Confidence 4456788899999999999999876544333222222221 2488999999999997 46678888777654
No 433
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.0086 Score=59.00 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=28.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+++...-.|||||.+|||||||++-|++.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 46677888889999999999999999999986
No 434
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.57 E-value=0.017 Score=54.70 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=31.3
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceecc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD 315 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~ 315 (480)
-|+|+|++++|||||++.|.+..+.+ ...+.||..|..|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~ 49 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVD 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcC
Confidence 58999999999999999999865422 3344567777666643
No 435
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.55 E-value=0.026 Score=60.78 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=48.7
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCC-CCCEEEEEeCCCCcChHHHHHHHHHHHHhcCce
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL-ERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 424 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~-~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~ 424 (480)
+=++..+.++++|+||.|||+.++.-+.. ..|+.|-.+.. .+..++++||+||... +....+.+.+....+.
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~-----~dLe~Yvke~d~~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~ni~ 236 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRS-----PDLEDYVKEVDPSKANVLLVNKADLLPP-EQRVAWAEYFRQNNIP 236 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCC-----hhHHHHHhccccccceEEEEehhhcCCH-HHHHHHHHHHHhcCce
Confidence 34456788999999999999998643322 12333332222 3778999999999986 4456777777655443
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.011 Score=56.21 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=36.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 317 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~ 317 (480)
.=++|.|+.|||||||+++|.... .+ -+...||+.|..|.+++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~ 49 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV 49 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence 347899999999999999999877 44 445679999999988754
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.018 Score=55.28 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=31.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceecc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD 315 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~ 315 (480)
-|+|+|++|||||||+++|....... -..+.||..+..+.++
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~ 57 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEID 57 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCC
Confidence 48899999999999999998654433 4456677766555554
No 438
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.012 Score=61.70 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=61.2
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhH------HHHHHHHHhhCCCCCCCCEEEEEe
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY------RTVKEELRMYNPDYLERPFIVVLN 400 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~------~~l~~eL~~~~~~l~~kp~ivV~N 400 (480)
.++++.|+||+- .+...+..-..+||+-++|+.+...+-...+ +.-. .|.+. ..-+..|+++|
T Consensus 157 ~~ftiLDApGHk-------~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt---~gv~~lVv~vN 225 (501)
T KOG0459|consen 157 KRFTILDAPGHK-------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT---AGVKHLIVLIN 225 (501)
T ss_pred eeEEeeccCccc-------ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHh---hccceEEEEEE
Confidence 579999999983 3344455666789999999998543211111 1111 11111 12366899999
Q ss_pred CCCCcCh---H----HHHHHHHHHHHhcCc--------eeeecccccCHHHHHH
Q 011645 401 KIDLPEA---R----DRLQSLTEEILKIGC--------DKVTSETELSSEDAVK 439 (480)
Q Consensus 401 K~Dl~~~---~----e~~~~l~~~l~~~g~--------~~~sa~t~~Gi~~ll~ 439 (480)
|||-+.. . +..+.+...+..+++ .+++..++.++.+..+
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9997743 2 334444445554443 3677778888777664
No 439
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.14 E-value=0.19 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.-||+||+.-+|||||++++..
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred eEEEeecCcccCchhHHHHHHH
Confidence 3489999999999999999865
No 440
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.12 E-value=0.076 Score=54.98 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=32.1
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCC-ceeeeccce
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP-FTTLMPNLG 312 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p-fTTl~p~~g 312 (480)
+-..+++|.+||+.++|||||.+.|.+.-.+.+-.| |+.+|+..+
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 345689999999999999999999987654443333 333455444
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.10 E-value=0.071 Score=45.85 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-+.++|.||+|||+|++.+...
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 442
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.06 E-value=0.11 Score=54.19 Aligned_cols=23 Identities=57% Similarity=0.761 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++|++||...|||||||-.|+..
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec
Confidence 68999999999999999988754
No 443
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.03 E-value=0.018 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.|+|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999865
No 444
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.02 E-value=0.0055 Score=60.30 Aligned_cols=32 Identities=41% Similarity=0.478 Sum_probs=27.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.++++..--++|||+.|||||||+|.|++.
T Consensus 22 ~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred ceeEEEcCCeEEEEECCCCCCceeeeeeeccc
Confidence 35556666668999999999999999999985
No 445
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.01 E-value=0.019 Score=55.07 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=26.9
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44556666689999999999999999999864
No 446
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.01 E-value=0.019 Score=55.03 Aligned_cols=33 Identities=36% Similarity=0.348 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...-.++|+|..|+|||||++.|.+..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566666789999999999999999999863
No 447
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.019 Score=55.82 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=27.1
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|||||||++.|++..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44566666689999999999999999999864
No 448
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.016 Score=55.33 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=26.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++.. .++|+|..|+|||||++.|.+..
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 44566667 89999999999999999999863
No 449
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.96 E-value=0.23 Score=50.62 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=57.4
Q ss_pred hccCCEEEEecccCCCCCh-hhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-HHHHHHHHhcCce--eeeccc
Q 011645 355 LRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCD--KVTSET 430 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~-~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-~~l~~~l~~~g~~--~~sa~t 430 (480)
+...|-+++|+.+..++.. ..++.++-..+. .+..-+||+||+||.+.++.. +++...+..+++. .+++++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~-----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA-----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH-----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcC
Confidence 3446777888888776542 222333222222 345567789999999876544 3566666777765 668889
Q ss_pred ccCHHHHHHHHHHhc
Q 011645 431 ELSSEDAVKSLSTEG 445 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~ 445 (480)
+++++++.+.|..+.
T Consensus 152 ~~~~~~l~~~l~~~~ 166 (301)
T COG1162 152 GDGLEELAELLAGKI 166 (301)
T ss_pred cccHHHHHHHhcCCe
Confidence 999999999887653
No 450
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.94 E-value=0.02 Score=54.36 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=27.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|.+..
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44566666789999999999999999999863
No 451
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.90 E-value=0.021 Score=54.31 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.++|+|..|||||||++.|++..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666689999999999999999999863
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.88 E-value=0.023 Score=51.41 Aligned_cols=33 Identities=39% Similarity=0.503 Sum_probs=27.3
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|..|+|||||++.|++..
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345566666689999999999999999999863
No 453
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.86 E-value=0.02 Score=54.59 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=26.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|||||||++.|++..
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455556679999999999999999999864
No 454
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.02 Score=55.55 Aligned_cols=32 Identities=38% Similarity=0.431 Sum_probs=26.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++-+--++|+|+.|||||||++.|++.-
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cceeccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 34455555578999999999999999999863
No 455
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.024 Score=52.90 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...-.++|+|..|+|||||++.|++..
T Consensus 18 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355666677789999999999999999999863
No 456
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.80 E-value=0.021 Score=54.53 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999864
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.78 E-value=0.026 Score=52.06 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=28.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.++..-.++|+|..|+|||||++.|.+..
T Consensus 18 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355666777789999999999999999999864
No 458
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.023 Score=54.72 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999863
No 459
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.76 E-value=0.024 Score=54.44 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=27.6
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||++.|.+..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566666789999999999999999999864
No 460
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.75 E-value=0.023 Score=53.43 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.4
Q ss_pred ehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 266 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 266 ~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+...--++|+|..|+|||||++.|++..
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555579999999999999999999863
No 461
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.024 Score=54.52 Aligned_cols=33 Identities=36% Similarity=0.399 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|||||||++.|++..
T Consensus 22 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566677789999999999999999999863
No 462
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.026 Score=53.84 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=27.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566666689999999999999999999863
No 463
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.72 E-value=0.022 Score=55.80 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.7
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.|+++..--|+|+|++|+|||||||.|.+-.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45566666689999999999999999998653
No 464
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.023 Score=54.31 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|||||||++.|++..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999863
No 465
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.69 E-value=0.024 Score=54.07 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=26.9
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++..-.++|+|..|+|||||++.|++..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999863
No 466
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.68 E-value=0.026 Score=54.23 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=26.9
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999864
No 467
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.66 E-value=0.026 Score=54.53 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|.+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45556666689999999999999999999864
No 468
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.66 E-value=0.027 Score=53.79 Aligned_cols=32 Identities=38% Similarity=0.392 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666689999999999999999999863
No 469
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.66 E-value=0.024 Score=54.37 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..--++|+|..|+|||||++.|++..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555566679999999999999999999864
No 470
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.65 E-value=0.023 Score=54.66 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=26.7
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.++|+|..|+|||||++.|++..
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555666689999999999999999999864
No 471
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.63 E-value=0.025 Score=53.46 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=27.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++..-.++|+|.+|+|||||++.|.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55566666789999999999999999999864
No 472
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.59 E-value=0.025 Score=54.77 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=26.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455555679999999999999999999864
No 473
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.59 E-value=0.025 Score=53.25 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhc
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+.+++...-.++|+|+.|+||||||+.+..
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345566666899999999999999999863
No 474
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.58 E-value=0.028 Score=53.32 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...-.++|+|..|+|||||++.|.+..
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345566677789999999999999999999864
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.58 E-value=0.029 Score=53.15 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355566667789999999999999999999864
No 476
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.026 Score=55.86 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=25.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.|.+...=-|+|+|++|+|||||||.+.+-.
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444445569999999999999999999864
No 477
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.55 E-value=0.026 Score=54.92 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.++++..-.++|+|..|+|||||++.|.+.
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455666668999999999999999999986
No 478
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.55 E-value=0.018 Score=64.78 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=60.4
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCC--------------CCcccc---------
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------------LGAEKY--------- 325 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--------------~~~~~~--------- 325 (480)
...++.|++||-.++||||.+++|.+...-.-.....|+.|.+-.+..... .....+
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 356789999999999999999999986543322222333332211110000 000000
Q ss_pred -------------------------CCceEEecCCcccccccc------cCccchhhhhhhccCCEEEEecccCC
Q 011645 326 -------------------------SSEATLADLPGLIEGAHL------GKGLGRNFLRHLRRTRLLVHVIDAAA 369 (480)
Q Consensus 326 -------------------------~~~~~l~DTPGlie~a~~------~~gl~~~fl~~i~~ad~ll~VvD~s~ 369 (480)
-..++++|+||+..-+.. ...+....+.+++.-..+++.|...+
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 124789999999764332 12344456778888888888887765
No 479
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.52 E-value=0.027 Score=53.85 Aligned_cols=32 Identities=34% Similarity=0.349 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++..-.++|+|..|+|||||++.|.+..
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44556666689999999999999999999863
No 480
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.52 E-value=0.027 Score=53.97 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.5
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++-.
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44555666679999999999999999999864
No 481
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.51 E-value=0.031 Score=53.16 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=23.6
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.....-.|+|+|+.|||||||+|.+.+-.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 33344479999999999999999998753
No 482
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.51 E-value=0.027 Score=53.69 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=25.7
Q ss_pred ehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 266 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 266 ~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+++...-.++|+|..|+|||||++.|++..
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555679999999999999999999864
No 483
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.50 E-value=0.03 Score=55.54 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||++.|++..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355566667789999999999999999999864
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.49 E-value=0.026 Score=53.19 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=24.9
Q ss_pred ehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 266 ELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 266 ~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++.++..-.++|+|.+|+|||||+++|.+.
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344555667999999999999999999975
No 485
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.49 E-value=0.031 Score=54.32 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.9
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.++|+|..|+|||||++.|++..
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666689999999999999999999863
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.028 Score=55.30 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.5
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.+...-.++|+|..|||||||++.|++.
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556666668999999999999999999975
No 487
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.47 E-value=0.029 Score=52.56 Aligned_cols=43 Identities=37% Similarity=0.481 Sum_probs=32.5
Q ss_pred EEEecCCCCChHHHHHHHhcCCCC-c-cCCCceeeeccceeccCC
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD 317 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~-i-a~~pfTTl~p~~g~v~~~ 317 (480)
|+|+|++++|||||.++|....+. . ...+.||..|..+..++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~ 49 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGV 49 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCc
Confidence 789999999999999999877653 3 456678888887766543
No 488
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.47 E-value=0.028 Score=54.78 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=26.7
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44555666689999999999999999999864
No 489
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.029 Score=52.50 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.++|+|..|+|||||++.|++..
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455666689999999999999999999864
No 490
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.46 E-value=0.029 Score=55.14 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|.+|+|||||++.|++..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566677789999999999999999999874
No 491
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.45 E-value=0.032 Score=52.12 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=27.4
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||++.|++..
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566666789999999999999999999863
No 492
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.45 E-value=0.033 Score=51.84 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||++.|.+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455666677789999999999999999999874
No 493
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.44 E-value=0.027 Score=54.62 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=26.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34555566689999999999999999999863
No 494
>PRK10908 cell division protein FtsE; Provisional
Probab=94.44 E-value=0.032 Score=53.77 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|..|+|||||++.|.+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566666789999999999999999999864
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.43 E-value=0.035 Score=43.43 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=18.9
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-..|.|..++|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999863
No 496
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.41 E-value=0.041 Score=55.27 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+++-....++++|..||||||+|+.|++-
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 45566777778999999999999999999986
No 497
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.03 Score=54.29 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...-.++|+|..|+|||||++.|++..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555666689999999999999999999874
No 498
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.033 Score=54.69 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|.+|+|||||++.|++..
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355566666789999999999999999999753
No 499
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.034 Score=54.74 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.1
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+++...--|++||..||||||||++|.+.
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc
Confidence 45566677778999999999999999999873
No 500
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.03 Score=54.07 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|..|+|||||++.|++..
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44555666679999999999999999999874
Done!