Query 011645
Match_columns 480
No_of_seqs 384 out of 3104
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 1.3E-73 4.5E-78 585.5 26.1 324 75-446 1-329 (342)
2 1udx_A The GTP-binding protein 100.0 1.2E-66 4.1E-71 546.3 26.5 322 75-447 1-325 (416)
3 1xzp_A Probable tRNA modificat 99.9 9E-28 3.1E-32 256.1 -7.8 290 74-445 86-403 (482)
4 4a9a_A Ribosome-interacting GT 99.9 1.4E-23 4.8E-28 217.0 10.5 161 271-441 71-242 (376)
5 3iev_A GTP-binding protein ERA 99.8 3.6E-20 1.2E-24 186.3 13.7 164 274-449 12-184 (308)
6 1wxq_A GTP-binding protein; st 99.8 8.7E-21 3E-25 197.7 3.6 166 273-439 1-262 (397)
7 3tkl_A RAS-related protein RAB 99.8 1.7E-19 5.7E-24 166.1 11.7 161 270-445 14-177 (196)
8 2dyk_A GTP-binding protein; GT 99.8 1.5E-19 5.3E-24 160.6 11.0 159 272-445 1-160 (161)
9 3gee_A MNME, tRNA modification 99.8 1.2E-19 4.1E-24 193.2 11.3 166 268-446 229-397 (476)
10 3tw8_B RAS-related protein RAB 99.8 5.5E-19 1.9E-23 159.7 13.8 160 270-445 7-169 (181)
11 1g16_A RAS-related protein SEC 99.8 2.8E-19 9.4E-24 160.1 11.7 158 272-445 3-163 (170)
12 1wf3_A GTP-binding protein; GT 99.8 2.4E-19 8.1E-24 180.1 12.0 162 274-447 9-173 (301)
13 3cph_A RAS-related protein SEC 99.8 4.6E-19 1.6E-23 165.5 11.8 161 269-445 17-180 (213)
14 4dsu_A GTPase KRAS, isoform 2B 99.8 4.2E-19 1.4E-23 161.9 11.0 159 272-446 4-165 (189)
15 3clv_A RAB5 protein, putative; 99.8 1.1E-18 3.6E-23 160.1 13.7 164 271-445 6-202 (208)
16 2q3h_A RAS homolog gene family 99.8 3.5E-19 1.2E-23 165.3 10.5 160 269-445 17-193 (201)
17 4dhe_A Probable GTP-binding pr 99.8 5.9E-19 2E-23 166.4 12.1 162 271-445 28-209 (223)
18 1x3s_A RAS-related protein RAB 99.8 7.2E-19 2.5E-23 161.4 12.3 162 271-446 14-177 (195)
19 2gj8_A MNME, tRNA modification 99.8 6.6E-20 2.3E-24 167.6 5.3 158 272-445 4-164 (172)
20 1ky3_A GTP-binding protein YPT 99.8 1.1E-18 3.8E-23 157.9 13.3 163 271-445 7-176 (182)
21 2wji_A Ferrous iron transport 99.8 5.6E-19 1.9E-23 159.8 11.4 155 273-445 4-163 (165)
22 2qu8_A Putative nucleolar GTP- 99.8 4.8E-19 1.6E-23 168.9 11.3 163 272-445 29-203 (228)
23 1wms_A RAB-9, RAB9, RAS-relate 99.8 9.6E-19 3.3E-23 158.1 12.4 162 271-445 6-172 (177)
24 1mky_A Probable GTP-binding pr 99.8 4.9E-19 1.7E-23 186.3 12.0 157 273-445 2-164 (439)
25 1c1y_A RAS-related protein RAP 99.8 1.3E-18 4.5E-23 155.2 12.9 158 273-445 4-165 (167)
26 2il1_A RAB12; G-protein, GDP, 99.8 4.3E-19 1.5E-23 164.5 9.8 160 271-445 25-188 (192)
27 1z0j_A RAB-22, RAS-related pro 99.8 2.1E-18 7.2E-23 154.3 13.9 157 272-445 6-167 (170)
28 3q72_A GTP-binding protein RAD 99.8 6.1E-19 2.1E-23 157.8 10.1 157 272-445 2-162 (166)
29 2g6b_A RAS-related protein RAB 99.8 2.4E-18 8.3E-23 155.9 13.9 159 271-445 9-172 (180)
30 2fg5_A RAB-22B, RAS-related pr 99.8 2.5E-18 8.6E-23 159.1 14.2 159 270-445 21-184 (192)
31 1vg8_A RAS-related protein RAB 99.8 1.2E-18 4E-23 162.0 12.0 163 271-446 7-174 (207)
32 1z0f_A RAB14, member RAS oncog 99.8 1.9E-18 6.4E-23 155.9 12.9 159 271-445 14-176 (179)
33 2efe_B Small GTP-binding prote 99.8 2.1E-18 7.2E-23 156.4 13.3 159 272-445 12-173 (181)
34 2lkc_A Translation initiation 99.8 8.9E-19 3E-23 158.5 10.7 152 271-445 7-169 (178)
35 2nzj_A GTP-binding protein REM 99.8 2.4E-18 8.3E-23 154.9 13.5 160 272-445 4-167 (175)
36 1r2q_A RAS-related protein RAB 99.8 2.4E-18 8.3E-23 153.6 13.4 157 272-445 6-167 (170)
37 2y8e_A RAB-protein 6, GH09086P 99.8 1.2E-18 4E-23 157.3 11.4 158 273-445 15-175 (179)
38 2bcg_Y Protein YP2, GTP-bindin 99.8 2.1E-18 7.1E-23 160.9 13.4 162 270-446 6-170 (206)
39 2gf9_A RAS-related protein RAB 99.8 2.1E-18 7.3E-23 158.7 13.2 161 270-445 20-183 (189)
40 2hxs_A RAB-26, RAS-related pro 99.8 3.2E-19 1.1E-23 161.4 7.5 162 272-446 6-172 (178)
41 4bas_A ADP-ribosylation factor 99.8 2.1E-18 7.3E-23 159.0 13.1 159 271-445 16-187 (199)
42 2bme_A RAB4A, RAS-related prot 99.8 1.4E-18 4.7E-23 158.6 11.7 161 270-445 8-171 (186)
43 2hup_A RAS-related protein RAB 99.8 1.4E-18 4.8E-23 162.5 11.9 163 268-445 25-191 (201)
44 3iby_A Ferrous iron transport 99.8 1.6E-19 5.5E-24 177.2 5.6 154 273-444 2-164 (256)
45 2h57_A ADP-ribosylation factor 99.8 2.3E-18 7.9E-23 158.6 12.9 157 271-445 20-185 (190)
46 3q85_A GTP-binding protein REM 99.8 1.7E-18 5.7E-23 155.3 11.6 161 272-445 2-165 (169)
47 1ek0_A Protein (GTP-binding pr 99.8 1.2E-18 4.2E-23 155.6 10.6 158 273-445 4-167 (170)
48 1jal_A YCHF protein; nucleotid 99.8 5.7E-19 1.9E-23 181.7 9.5 111 273-383 3-132 (363)
49 1z2a_A RAS-related protein RAB 99.8 1.1E-18 3.7E-23 155.9 10.1 158 272-445 5-165 (168)
50 2a5j_A RAS-related protein RAB 99.8 2.2E-18 7.6E-23 159.0 12.4 161 270-445 19-182 (191)
51 1u8z_A RAS-related protein RAL 99.8 1.6E-18 5.4E-23 154.3 11.0 158 273-445 5-165 (168)
52 3bwd_D RAC-like GTP-binding pr 99.8 2.2E-18 7.5E-23 156.4 11.9 157 272-445 8-179 (182)
53 1z08_A RAS-related protein RAB 99.8 1.4E-18 5E-23 155.6 10.5 160 271-445 5-167 (170)
54 2ew1_A RAS-related protein RAB 99.8 2.8E-18 9.7E-23 161.3 12.9 160 270-445 24-187 (201)
55 2fu5_C RAS-related protein RAB 99.8 7.3E-19 2.5E-23 160.3 8.4 160 270-445 6-169 (183)
56 1upt_A ARL1, ADP-ribosylation 99.8 3.9E-18 1.3E-22 153.0 12.9 157 269-445 4-167 (171)
57 2atx_A Small GTP binding prote 99.8 6.7E-18 2.3E-22 155.8 14.7 158 271-445 17-191 (194)
58 3pqc_A Probable GTP-binding pr 99.8 7.9E-18 2.7E-22 154.1 15.1 158 271-445 22-192 (195)
59 3bc1_A RAS-related protein RAB 99.8 7.5E-18 2.6E-22 153.7 14.6 166 271-445 10-183 (195)
60 2hjg_A GTP-binding protein ENG 99.8 6.4E-19 2.2E-23 185.3 8.5 155 273-445 4-163 (436)
61 2bov_A RAla, RAS-related prote 99.8 2.3E-18 7.8E-23 159.7 11.2 161 271-446 13-176 (206)
62 1f6b_A SAR1; gtpases, N-termin 99.8 2.4E-18 8.3E-23 160.7 11.3 152 273-444 26-196 (198)
63 2oil_A CATX-8, RAS-related pro 99.8 3.5E-18 1.2E-22 157.6 12.2 160 269-445 22-186 (193)
64 1zbd_A Rabphilin-3A; G protein 99.8 4.5E-18 1.5E-22 158.0 13.0 159 271-445 7-169 (203)
65 1zj6_A ADP-ribosylation factor 99.8 4.4E-18 1.5E-22 156.3 12.7 156 271-446 15-177 (187)
66 2erx_A GTP-binding protein DI- 99.8 2.3E-18 7.7E-23 154.1 10.5 158 273-445 4-165 (172)
67 2dby_A GTP-binding protein; GD 99.8 7.7E-19 2.6E-23 181.3 8.4 163 273-435 2-250 (368)
68 3b1v_A Ferrous iron uptake tra 99.8 1.3E-18 4.4E-23 172.4 9.7 155 272-445 3-162 (272)
69 2a9k_A RAS-related protein RAL 99.8 3.3E-18 1.1E-22 155.4 11.6 159 272-445 18-179 (187)
70 1r8s_A ADP-ribosylation factor 99.8 3.4E-18 1.2E-22 152.5 11.5 153 273-445 1-160 (164)
71 1m2o_B GTP-binding protein SAR 99.8 3.3E-18 1.1E-22 158.6 11.8 151 273-443 24-188 (190)
72 3reg_A RHO-like small GTPase; 99.8 4.7E-18 1.6E-22 157.0 12.8 159 270-445 21-186 (194)
73 3t5g_A GTP-binding protein RHE 99.8 3.1E-18 1.1E-22 155.8 11.3 160 272-446 6-168 (181)
74 4djt_A GTP-binding nuclear pro 99.8 2.4E-18 8.1E-23 161.9 10.5 164 271-450 10-178 (218)
75 3dz8_A RAS-related protein RAB 99.8 2.2E-18 7.7E-23 159.0 10.1 158 270-445 21-184 (191)
76 1kao_A RAP2A; GTP-binding prot 99.8 5.9E-18 2E-22 150.4 12.4 157 273-445 4-164 (167)
77 2iwr_A Centaurin gamma 1; ANK 99.7 3.3E-18 1.1E-22 155.2 11.0 153 273-445 8-167 (178)
78 1svi_A GTP-binding protein YSX 99.7 7.3E-18 2.5E-22 155.1 13.2 158 271-445 22-193 (195)
79 3cbq_A GTP-binding protein REM 99.7 2.7E-18 9.3E-23 160.2 10.5 162 271-445 22-186 (195)
80 2j0v_A RAC-like GTP-binding pr 99.7 3.9E-18 1.3E-22 159.7 11.4 159 272-447 9-180 (212)
81 3kkq_A RAS-related protein M-R 99.7 8.6E-18 2.9E-22 153.1 13.2 158 272-445 18-180 (183)
82 2fn4_A P23, RAS-related protei 99.7 3.7E-18 1.3E-22 154.2 10.7 159 272-445 9-170 (181)
83 2hjg_A GTP-binding protein ENG 99.7 1.5E-18 5.1E-23 182.4 9.2 162 271-446 174-348 (436)
84 3t1o_A Gliding protein MGLA; G 99.7 8.3E-18 2.8E-22 154.1 12.9 164 271-445 13-190 (198)
85 1z06_A RAS-related protein RAB 99.7 3.5E-18 1.2E-22 157.3 10.3 162 271-445 19-186 (189)
86 1mh1_A RAC1; GTP-binding, GTPa 99.7 4.2E-18 1.4E-22 154.8 10.7 158 272-446 5-179 (186)
87 2o52_A RAS-related protein RAB 99.7 3.1E-18 1.1E-22 159.8 10.1 161 270-445 23-186 (200)
88 2p5s_A RAS and EF-hand domain 99.7 4.8E-18 1.7E-22 158.0 11.2 159 270-445 26-195 (199)
89 2ce2_X GTPase HRAS; signaling 99.7 7.8E-18 2.7E-22 149.1 12.1 157 273-445 4-163 (166)
90 1ksh_A ARF-like protein 2; sma 99.7 4E-18 1.4E-22 156.0 10.4 155 271-445 17-178 (186)
91 2h17_A ADP-ribosylation factor 99.7 5.3E-18 1.8E-22 155.2 11.1 153 271-443 20-179 (181)
92 4gzl_A RAS-related C3 botulinu 99.7 4.6E-18 1.6E-22 159.3 10.9 157 271-444 29-202 (204)
93 1zd9_A ADP-ribosylation factor 99.7 5.7E-18 2E-22 156.1 11.2 158 269-445 19-183 (188)
94 3oes_A GTPase rhebl1; small GT 99.7 6.9E-18 2.3E-22 157.2 11.9 162 269-446 21-186 (201)
95 2f7s_A C25KG, RAS-related prot 99.7 1.2E-18 4.2E-23 163.8 6.7 168 270-445 23-197 (217)
96 3i8s_A Ferrous iron transport 99.7 1.6E-18 5.6E-23 171.4 7.9 157 273-446 4-168 (274)
97 2gf0_A GTP-binding protein DI- 99.7 7.1E-18 2.4E-22 155.5 11.6 162 272-447 8-171 (199)
98 3con_A GTPase NRAS; structural 99.7 6.8E-18 2.3E-22 154.9 11.4 158 273-445 22-181 (190)
99 3cpj_B GTP-binding protein YPT 99.7 6.5E-18 2.2E-22 160.3 11.6 163 270-447 11-176 (223)
100 3lxw_A GTPase IMAP family memb 99.7 9.7E-18 3.3E-22 163.3 12.8 165 273-446 22-207 (247)
101 1fzq_A ADP-ribosylation factor 99.7 8.5E-18 2.9E-22 154.4 11.6 150 272-445 16-176 (181)
102 2qtf_A Protein HFLX, GTP-bindi 99.7 8.8E-18 3E-22 173.1 12.7 163 273-445 180-352 (364)
103 1ega_A Protein (GTP-binding pr 99.7 7.6E-18 2.6E-22 168.9 11.8 159 274-447 10-175 (301)
104 3a1s_A Iron(II) transport prot 99.7 2E-18 7E-23 169.4 7.3 156 272-445 5-165 (258)
105 4dkx_A RAS-related protein RAB 99.7 1.9E-17 6.3E-22 158.6 13.7 157 273-446 14-175 (216)
106 4dcu_A GTP-binding protein ENG 99.7 5.5E-18 1.9E-22 179.1 10.6 162 270-445 193-367 (456)
107 2gco_A H9, RHO-related GTP-bin 99.7 1.3E-17 4.5E-22 155.5 11.9 157 272-445 25-198 (201)
108 2wjg_A FEOB, ferrous iron tran 99.7 2.6E-18 8.8E-23 157.3 6.9 157 273-447 8-169 (188)
109 1moz_A ARL1, ADP-ribosylation 99.7 5.4E-18 1.8E-22 154.2 9.0 155 271-445 17-178 (183)
110 3ihw_A Centg3; RAS, centaurin, 99.7 1.7E-17 5.8E-22 153.2 12.0 153 272-445 20-178 (184)
111 2atv_A RERG, RAS-like estrogen 99.7 2E-17 6.7E-22 153.3 12.2 157 272-445 28-189 (196)
112 3geh_A MNME, tRNA modification 99.7 9.8E-19 3.3E-23 185.6 3.7 162 268-447 220-384 (462)
113 2e87_A Hypothetical protein PH 99.7 5.9E-17 2E-21 165.9 16.8 163 271-445 166-334 (357)
114 3l0i_B RAS-related protein RAB 99.7 3.4E-19 1.2E-23 165.8 0.1 160 270-445 31-194 (199)
115 2fv8_A H6, RHO-related GTP-bin 99.7 1.4E-17 4.7E-22 156.1 11.0 157 272-445 25-198 (207)
116 3q3j_B RHO-related GTP-binding 99.7 2.1E-17 7.4E-22 156.3 12.1 158 271-445 26-201 (214)
117 2j1l_A RHO-related GTP-binding 99.7 9.5E-18 3.3E-22 158.4 9.6 157 272-445 34-207 (214)
118 1m7b_A RND3/RHOE small GTP-bin 99.7 2E-17 6.7E-22 151.8 11.4 157 272-445 7-181 (184)
119 3lxx_A GTPase IMAP family memb 99.7 1.1E-17 3.8E-22 160.9 9.7 165 271-445 28-212 (239)
120 2b6h_A ADP-ribosylation factor 99.7 1.6E-17 5.4E-22 154.2 10.3 155 271-445 28-189 (192)
121 3lvq_E ARF-GAP with SH3 domain 99.7 2.7E-17 9.1E-22 175.1 13.0 156 271-446 321-483 (497)
122 2yc2_C IFT27, small RAB-relate 99.7 7.2E-18 2.4E-22 156.3 7.5 165 270-445 18-190 (208)
123 1gwn_A RHO-related GTP-binding 99.7 2.7E-17 9.1E-22 155.0 11.2 158 271-445 27-202 (205)
124 2x77_A ADP-ribosylation factor 99.7 1.9E-17 6.5E-22 152.1 9.9 155 271-445 21-182 (189)
125 3r7w_A Gtpase1, GTP-binding pr 99.7 2.8E-17 9.5E-22 165.1 11.7 164 272-445 3-179 (307)
126 2fh5_B SR-beta, signal recogni 99.7 4.8E-17 1.7E-21 152.5 12.2 159 271-444 6-213 (214)
127 1mky_A Probable GTP-binding pr 99.7 2.6E-17 9E-22 173.1 11.3 161 271-445 179-353 (439)
128 3llu_A RAS-related GTP-binding 99.7 1.3E-16 4.4E-21 148.2 14.3 161 271-445 19-195 (196)
129 4dcu_A GTP-binding protein ENG 99.7 1.4E-17 5E-22 175.9 8.8 156 272-445 23-183 (456)
130 3c5c_A RAS-like protein 12; GD 99.7 4.8E-17 1.6E-21 150.2 11.3 158 272-445 21-184 (187)
131 3gj0_A GTP-binding nuclear pro 99.7 9.1E-18 3.1E-22 158.7 5.9 157 272-447 15-175 (221)
132 2cxx_A Probable GTP-binding pr 99.7 1E-16 3.5E-21 146.3 11.3 154 272-445 1-182 (190)
133 2g3y_A GTP-binding protein GEM 99.7 5.7E-17 2E-21 154.5 9.4 161 271-445 36-201 (211)
134 3o47_A ADP-ribosylation factor 99.7 9.6E-17 3.3E-21 162.9 10.9 155 271-445 164-325 (329)
135 3th5_A RAS-related C3 botulinu 99.5 3.5E-18 1.2E-22 159.4 0.0 158 270-444 28-202 (204)
136 2cjw_A GTP-binding protein GEM 99.7 1.1E-16 3.8E-21 148.8 10.2 161 272-445 6-170 (192)
137 3k53_A Ferrous iron transport 99.7 7.4E-17 2.5E-21 158.6 8.8 157 272-445 3-164 (271)
138 3qq5_A Small GTP-binding prote 99.7 4.5E-17 1.5E-21 171.0 6.9 159 271-446 33-195 (423)
139 2wkq_A NPH1-1, RAS-related C3 99.7 1.8E-16 6E-21 158.0 10.0 161 268-445 151-328 (332)
140 2xtp_A GTPase IMAP family memb 99.7 2.5E-16 8.4E-21 153.2 10.2 165 272-447 22-208 (260)
141 3dpu_A RAB family protein; roc 99.6 3.7E-16 1.3E-20 168.3 11.6 160 271-447 40-208 (535)
142 3sjy_A Translation initiation 99.6 3.2E-15 1.1E-19 155.5 17.3 165 271-446 7-191 (403)
143 2zej_A Dardarin, leucine-rich 99.6 8.2E-16 2.8E-20 141.3 11.0 160 273-445 3-176 (184)
144 3t5d_A Septin-7; GTP-binding p 99.6 1.7E-15 5.7E-20 149.3 12.5 161 273-445 9-202 (274)
145 2ohf_A Protein OLA1, GTP-bindi 99.6 4.4E-16 1.5E-20 161.8 7.5 119 268-386 18-155 (396)
146 2aka_B Dynamin-1; fusion prote 99.6 2E-16 6.8E-21 156.2 4.4 169 271-444 25-250 (299)
147 3c5h_A Glucocorticoid receptor 99.6 7.5E-15 2.6E-19 143.3 15.3 173 271-445 18-253 (255)
148 2f9l_A RAB11B, member RAS onco 99.6 3.4E-15 1.2E-19 138.9 12.1 159 272-445 5-166 (199)
149 1wb1_A Translation elongation 99.6 8.2E-15 2.8E-19 156.2 14.4 153 272-445 19-187 (482)
150 1jwy_B Dynamin A GTPase domain 99.6 2.6E-15 8.7E-20 149.7 9.8 171 271-446 23-261 (315)
151 3j2k_7 ERF3, eukaryotic polype 99.6 8.4E-15 2.9E-19 154.3 13.9 150 270-439 15-217 (439)
152 1oix_A RAS-related protein RAB 99.6 6.9E-15 2.3E-19 136.4 11.5 160 270-444 27-189 (191)
153 3def_A T7I23.11 protein; chlor 99.6 7.2E-15 2.5E-19 143.8 11.7 122 272-405 36-164 (262)
154 3tr5_A RF-3, peptide chain rel 99.6 4.3E-15 1.5E-19 160.0 10.0 119 268-407 9-149 (528)
155 3izy_P Translation initiation 99.6 8.5E-16 2.9E-20 165.6 4.2 155 271-445 3-166 (537)
156 1nrj_B SR-beta, signal recogni 99.6 1E-14 3.5E-19 136.9 10.9 119 271-407 11-135 (218)
157 2j69_A Bacterial dynamin-like 99.6 1.6E-14 5.4E-19 160.4 14.0 168 269-445 66-323 (695)
158 1kk1_A EIF2gamma; initiation o 99.6 2.2E-14 7.4E-19 149.5 13.7 165 270-446 8-199 (410)
159 1h65_A Chloroplast outer envel 99.5 1.3E-14 4.5E-19 142.4 11.0 128 272-407 39-169 (270)
160 3p26_A Elongation factor 1 alp 99.5 1.7E-14 5.8E-19 153.6 12.1 148 270-436 31-227 (483)
161 1s0u_A EIF-2-gamma, translatio 99.5 3.3E-14 1.1E-18 148.1 14.0 164 271-446 7-197 (408)
162 2ged_A SR-beta, signal recogni 99.5 1.6E-14 5.3E-19 132.8 9.0 123 270-407 46-171 (193)
163 2ywe_A GTP-binding protein LEP 99.5 4.3E-14 1.5E-18 154.1 13.8 159 270-446 4-183 (600)
164 3izq_1 HBS1P, elongation facto 99.5 1.8E-14 6E-19 157.8 10.8 149 270-437 165-362 (611)
165 2c78_A Elongation factor TU-A; 99.5 2E-14 7E-19 149.5 10.8 154 271-445 10-210 (405)
166 2elf_A Protein translation elo 99.5 5.1E-14 1.7E-18 145.3 13.3 141 274-445 23-178 (370)
167 3cb4_D GTP-binding protein LEP 99.5 6.3E-14 2.1E-18 152.9 13.1 160 271-446 3-181 (599)
168 1zun_B Sulfate adenylate trans 99.5 6.8E-14 2.3E-18 146.9 12.9 148 270-437 22-214 (434)
169 1d2e_A Elongation factor TU (E 99.5 1.1E-13 3.8E-18 143.7 13.4 154 272-446 3-194 (397)
170 3mca_A HBS1, elongation factor 99.5 7.3E-15 2.5E-19 160.3 4.0 154 270-444 175-394 (592)
171 1pui_A ENGB, probable GTP-bind 99.5 1.6E-13 5.4E-18 127.9 12.5 161 268-445 22-197 (210)
172 1zo1_I IF2, translation initia 99.5 7.8E-15 2.7E-19 156.8 3.1 153 271-444 3-164 (501)
173 3r7w_B Gtpase2, GTP-binding pr 99.5 1.6E-13 5.4E-18 139.3 11.8 156 274-447 1-174 (331)
174 1jny_A EF-1-alpha, elongation 99.5 1.3E-13 4.6E-18 144.8 11.2 146 271-436 5-202 (435)
175 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 9.8E-14 3.4E-18 144.2 9.5 102 268-369 16-127 (392)
176 2x2e_A Dynamin-1; nitration, h 99.4 2.6E-14 8.8E-19 146.1 4.4 168 271-443 30-254 (353)
177 2qpt_A EH domain-containing pr 99.4 1.8E-13 6.3E-18 148.0 10.6 133 270-409 63-235 (550)
178 1f60_A Elongation factor EEF1A 99.4 1.1E-13 3.9E-18 146.4 8.6 144 272-436 7-201 (458)
179 1g7s_A Translation initiation 99.4 4.6E-13 1.6E-17 146.1 12.9 161 272-445 5-216 (594)
180 3t34_A Dynamin-related protein 99.4 9.9E-14 3.4E-18 141.9 6.4 165 269-437 31-251 (360)
181 2www_A Methylmalonic aciduria 99.4 3.5E-13 1.2E-17 137.8 9.4 154 272-445 74-277 (349)
182 1r5b_A Eukaryotic peptide chai 99.4 2.9E-13 1E-17 143.6 8.6 149 270-438 41-243 (467)
183 2h5e_A Peptide chain release f 99.4 3.6E-13 1.2E-17 145.1 8.6 129 269-418 10-162 (529)
184 1dar_A EF-G, elongation factor 99.4 1.2E-12 4E-17 145.3 12.5 117 270-407 10-144 (691)
185 3avx_A Elongation factor TS, e 99.4 2.3E-12 7.9E-17 148.0 14.5 155 270-445 294-484 (1289)
186 3p32_A Probable GTPase RV1496/ 99.4 1E-12 3.5E-17 134.4 9.5 99 327-445 172-282 (355)
187 3zvr_A Dynamin-1; hydrolase, D 99.3 4.4E-13 1.5E-17 149.3 5.8 169 270-443 49-274 (772)
188 2qag_A Septin-2, protein NEDD5 99.3 3E-12 1E-16 131.5 11.3 160 273-444 38-230 (361)
189 2xex_A Elongation factor G; GT 99.3 2.3E-12 7.8E-17 143.0 11.1 128 270-418 8-155 (693)
190 2rdo_7 EF-G, elongation factor 99.3 1.3E-11 4.3E-16 137.3 15.3 124 270-407 8-149 (704)
191 2p67_A LAO/AO transport system 99.3 4.5E-12 1.5E-16 129.0 9.6 158 268-445 52-259 (341)
192 2dy1_A Elongation factor G; tr 99.3 1.4E-11 4.9E-16 136.1 14.0 116 269-405 6-139 (665)
193 3ec1_A YQEH GTPase; atnos1, at 99.2 4.8E-13 1.7E-17 137.8 -0.6 118 273-407 163-289 (369)
194 1yrb_A ATP(GTP)binding protein 99.2 3.8E-11 1.3E-15 116.0 11.3 114 328-445 110-255 (262)
195 3vqt_A RF-3, peptide chain rel 99.2 9.6E-11 3.3E-15 126.7 15.5 131 267-418 26-180 (548)
196 1n0u_A EF-2, elongation factor 99.2 1.5E-11 5E-16 139.3 8.3 120 271-405 18-163 (842)
197 3h2y_A GTPase family protein; 99.2 3E-12 1E-16 131.9 0.8 118 273-407 161-288 (368)
198 2qm8_A GTPase/ATPase; G protei 99.2 7.6E-11 2.6E-15 120.0 10.3 161 265-445 48-259 (337)
199 3j25_A Tetracycline resistance 99.1 2.2E-10 7.4E-15 126.0 12.0 115 272-407 2-134 (638)
200 2wsm_A Hydrogenase expression/ 99.1 7.3E-11 2.5E-15 110.9 6.8 156 270-445 28-212 (221)
201 2qag_C Septin-7; cell cycle, c 99.1 1.1E-09 3.6E-14 114.8 14.0 161 273-445 32-225 (418)
202 2qnr_A Septin-2, protein NEDD5 99.0 3.5E-10 1.2E-14 113.2 9.3 159 273-445 19-212 (301)
203 4fn5_A EF-G 1, elongation fact 98.9 2.9E-09 9.9E-14 118.4 10.9 135 269-418 10-165 (709)
204 2hf9_A Probable hydrogenase ni 98.8 6.9E-09 2.4E-13 97.6 9.2 154 271-445 37-222 (226)
205 1puj_A YLQF, conserved hypothe 98.8 1E-09 3.5E-14 109.0 1.5 60 271-341 119-179 (282)
206 4fid_A G protein alpha subunit 98.7 2.1E-08 7.1E-13 102.2 9.1 110 328-445 162-326 (340)
207 2qag_B Septin-6, protein NEDD5 98.7 2.8E-08 9.6E-13 104.1 9.6 124 273-409 43-193 (427)
208 3sop_A Neuronal-specific septi 98.7 4.8E-08 1.6E-12 96.3 9.9 140 273-424 3-175 (270)
209 1f5n_A Interferon-induced guan 98.6 5E-08 1.7E-12 106.1 7.3 101 271-377 37-140 (592)
210 1u0l_A Probable GTPase ENGC; p 98.5 2.5E-07 8.5E-12 92.3 10.2 103 328-444 64-170 (301)
211 1cip_A Protein (guanine nucleo 98.5 3.9E-08 1.3E-12 100.7 3.4 110 328-445 194-342 (353)
212 1tq4_A IIGP1, interferon-induc 98.5 1.3E-06 4.5E-11 91.2 13.5 156 274-450 71-256 (413)
213 3cnl_A YLQF, putative uncharac 98.4 1.3E-07 4.4E-12 92.8 5.2 58 273-341 100-158 (262)
214 1zcb_A G alpha I/13; GTP-bindi 98.4 8.6E-08 2.9E-12 98.5 2.6 110 328-445 202-351 (362)
215 2j37_W Signal recognition part 98.4 4.8E-07 1.6E-11 96.7 7.8 160 271-444 100-310 (504)
216 2xtz_A Guanine nucleotide-bind 98.3 4.6E-07 1.6E-11 92.8 5.2 110 328-445 184-343 (354)
217 3l82_B F-box only protein 4; T 98.3 1.1E-06 3.7E-11 83.8 7.0 115 328-445 97-221 (227)
218 1azs_C GS-alpha; complex (lyas 98.3 8.6E-07 2.9E-11 92.2 6.6 110 328-445 218-383 (402)
219 2yv5_A YJEQ protein; hydrolase 98.2 4.6E-06 1.6E-10 83.3 10.4 86 353-443 75-165 (302)
220 1puj_A YLQF, conserved hypothe 98.2 2.6E-06 8.8E-11 84.4 7.6 100 331-445 3-104 (282)
221 2v3c_C SRP54, signal recogniti 98.1 3.3E-06 1.1E-10 88.6 8.1 116 273-407 100-253 (432)
222 3l2o_B F-box only protein 4; s 98.1 4.7E-06 1.6E-10 82.9 7.2 99 345-445 198-306 (312)
223 3szr_A Interferon-induced GTP- 98.1 5.4E-06 1.9E-10 90.6 8.0 24 273-296 46-69 (608)
224 3dm5_A SRP54, signal recogniti 98.0 1.4E-05 4.9E-10 84.0 9.9 149 272-434 100-278 (443)
225 3ohm_A Guanine nucleotide-bind 98.0 2.1E-06 7.3E-11 86.9 2.8 110 328-445 168-316 (327)
226 3ec1_A YQEH GTPase; atnos1, at 97.9 1.5E-05 5.3E-10 81.7 7.5 87 350-444 63-159 (369)
227 3h2y_A GTPase family protein; 97.8 2.1E-05 7.2E-10 80.7 7.4 87 350-444 61-157 (368)
228 3cnl_A YLQF, putative uncharac 97.8 1.7E-05 5.6E-10 77.7 5.0 84 348-443 12-97 (262)
229 3kl4_A SRP54, signal recogniti 97.6 3.8E-05 1.3E-09 80.6 5.7 73 327-409 180-255 (433)
230 1j8m_F SRP54, signal recogniti 97.6 0.0002 6.8E-09 71.3 9.9 95 328-435 182-279 (297)
231 3q5d_A Atlastin-1; G protein, 97.6 4E-05 1.4E-09 80.7 4.4 70 271-340 66-153 (447)
232 3ney_A 55 kDa erythrocyte memb 97.5 0.00026 8.8E-09 66.5 9.1 43 274-316 21-65 (197)
233 3e70_C DPA, signal recognition 97.0 0.00047 1.6E-08 69.6 5.3 24 272-295 129-152 (328)
234 1t9h_A YLOQ, probable GTPase E 97.0 0.00024 8.3E-09 71.2 2.7 26 271-296 172-197 (307)
235 2rcn_A Probable GTPase ENGC; Y 96.9 0.00047 1.6E-08 70.5 3.9 56 274-340 217-281 (358)
236 2px0_A Flagellar biosynthesis 96.9 0.0014 4.6E-08 65.2 7.1 23 272-294 105-127 (296)
237 2yhs_A FTSY, cell division pro 96.9 0.00054 1.8E-08 72.9 4.3 31 265-295 286-316 (503)
238 2xxa_A Signal recognition part 96.8 0.0028 9.5E-08 66.4 9.1 124 272-407 100-255 (433)
239 1zu4_A FTSY; GTPase, signal re 96.8 0.0015 5.2E-08 65.6 6.5 30 265-294 98-127 (320)
240 4dzz_A Plasmid partitioning pr 96.8 0.0026 9E-08 58.1 7.4 67 328-405 77-143 (206)
241 2yv5_A YJEQ protein; hydrolase 96.7 0.0016 5.4E-08 64.7 5.8 23 273-296 166-188 (302)
242 1vma_A Cell division protein F 96.7 0.0012 4.2E-08 65.9 4.7 26 269-294 101-126 (306)
243 1t9h_A YLOQ, probable GTPase E 96.6 0.0017 5.9E-08 64.9 5.0 83 354-440 83-170 (307)
244 1rj9_A FTSY, signal recognitio 96.5 0.0053 1.8E-07 61.2 8.2 22 273-294 103-124 (304)
245 1u0l_A Probable GTPase ENGC; p 96.5 0.0024 8.1E-08 63.3 5.2 24 273-296 170-193 (301)
246 1kgd_A CASK, peripheral plasma 96.3 0.0025 8.5E-08 57.9 4.2 42 274-315 7-50 (180)
247 2rcn_A Probable GTPase ENGC; Y 96.2 0.015 5.2E-07 59.3 9.6 83 355-442 128-214 (358)
248 1ex7_A Guanylate kinase; subst 96.2 0.0033 1.1E-07 58.3 4.3 43 275-317 4-48 (186)
249 1lvg_A Guanylate kinase, GMP k 96.0 0.0028 9.5E-08 58.7 2.7 42 273-314 5-48 (198)
250 3cwq_A Para family chromosome 95.9 0.031 1E-06 52.0 9.6 80 328-423 69-150 (209)
251 1ls1_A Signal recognition part 95.9 0.0097 3.3E-07 58.9 6.4 25 271-295 97-121 (295)
252 2ffh_A Protein (FFH); SRP54, s 95.8 0.014 4.8E-07 60.9 7.5 24 271-294 97-120 (425)
253 3a00_A Guanylate kinase, GMP k 95.8 0.0044 1.5E-07 56.4 3.0 41 275-315 4-46 (186)
254 3tau_A Guanylate kinase, GMP k 95.7 0.0083 2.8E-07 55.8 4.7 41 274-314 10-52 (208)
255 2qor_A Guanylate kinase; phosp 95.6 0.0078 2.7E-07 55.6 3.8 43 273-315 13-57 (204)
256 1ye8_A Protein THEP1, hypothet 95.4 0.0069 2.4E-07 55.4 3.0 23 274-296 2-24 (178)
257 2pcj_A ABC transporter, lipopr 95.4 0.0083 2.8E-07 56.9 3.4 33 264-296 22-54 (224)
258 1z6g_A Guanylate kinase; struc 95.4 0.0069 2.4E-07 56.9 2.8 32 265-296 16-47 (218)
259 3end_A Light-independent proto 95.3 0.065 2.2E-06 52.4 9.6 67 328-404 158-225 (307)
260 3tif_A Uncharacterized ABC tra 95.2 0.0097 3.3E-07 56.9 3.4 33 264-296 23-55 (235)
261 3lnc_A Guanylate kinase, GMP k 95.2 0.0071 2.4E-07 56.9 2.4 48 266-313 21-70 (231)
262 1g6h_A High-affinity branched- 95.2 0.01 3.6E-07 57.4 3.5 33 264-296 25-57 (257)
263 3tr0_A Guanylate kinase, GMP k 95.2 0.0097 3.3E-07 54.3 3.0 25 273-297 8-32 (205)
264 2pze_A Cystic fibrosis transme 95.1 0.011 3.9E-07 56.1 3.5 33 264-296 26-58 (229)
265 2cbz_A Multidrug resistance-as 95.1 0.011 3.8E-07 56.5 3.4 33 264-296 23-55 (237)
266 4gp7_A Metallophosphoesterase; 95.1 0.01 3.6E-07 53.4 3.0 28 267-294 4-31 (171)
267 1mv5_A LMRA, multidrug resista 95.1 0.011 3.8E-07 56.6 3.3 33 264-296 20-52 (243)
268 2ff7_A Alpha-hemolysin translo 95.1 0.012 4E-07 56.7 3.5 33 264-296 27-59 (247)
269 1b0u_A Histidine permease; ABC 95.0 0.012 4E-07 57.3 3.4 33 264-296 24-56 (262)
270 1sgw_A Putative ABC transporte 95.0 0.011 3.8E-07 55.8 3.2 33 264-296 27-59 (214)
271 4g1u_C Hemin import ATP-bindin 95.0 0.012 4.1E-07 57.4 3.5 33 264-296 29-61 (266)
272 3gfo_A Cobalt import ATP-bindi 95.0 0.012 4.1E-07 57.8 3.5 33 264-296 26-58 (275)
273 1zp6_A Hypothetical protein AT 95.0 0.011 3.9E-07 53.2 3.0 22 274-295 11-32 (191)
274 1s96_A Guanylate kinase, GMP k 95.0 0.0093 3.2E-07 56.5 2.5 37 274-310 18-57 (219)
275 1ji0_A ABC transporter; ATP bi 95.0 0.013 4.4E-07 56.2 3.5 33 264-296 24-56 (240)
276 2onk_A Molybdate/tungstate ABC 95.0 0.013 4.4E-07 56.3 3.5 33 263-296 16-48 (240)
277 2olj_A Amino acid ABC transpor 95.0 0.013 4.3E-07 57.2 3.4 32 265-296 43-74 (263)
278 2d2e_A SUFC protein; ABC-ATPas 94.9 0.014 4.7E-07 56.3 3.6 32 264-295 21-52 (250)
279 2ihy_A ABC transporter, ATP-bi 94.9 0.014 4.6E-07 57.4 3.5 33 264-296 39-71 (279)
280 2qi9_C Vitamin B12 import ATP- 94.9 0.014 4.8E-07 56.4 3.5 33 264-296 18-50 (249)
281 2ghi_A Transport protein; mult 94.8 0.014 4.9E-07 56.6 3.4 33 264-296 38-70 (260)
282 2zu0_C Probable ATP-dependent 94.8 0.014 4.9E-07 56.8 3.4 31 265-295 39-69 (267)
283 1znw_A Guanylate kinase, GMP k 94.8 0.014 4.6E-07 54.1 3.0 29 269-297 17-45 (207)
284 1vpl_A ABC transporter, ATP-bi 94.8 0.015 5E-07 56.5 3.4 33 264-296 33-65 (256)
285 2ixe_A Antigen peptide transpo 94.8 0.015 5.2E-07 56.8 3.4 32 265-296 38-69 (271)
286 2nq2_C Hypothetical ABC transp 94.7 0.016 5.6E-07 56.0 3.4 33 264-296 23-55 (253)
287 1htw_A HI0065; nucleotide-bind 94.7 0.012 4.3E-07 52.8 2.4 27 270-296 31-57 (158)
288 3c8u_A Fructokinase; YP_612366 94.6 0.014 4.7E-07 54.1 2.6 24 272-295 22-45 (208)
289 2yz2_A Putative ABC transporte 94.6 0.018 6E-07 56.1 3.4 32 265-296 26-57 (266)
290 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.6E-07 53.1 3.0 31 265-295 18-48 (199)
291 1kag_A SKI, shikimate kinase I 94.6 0.015 5.3E-07 51.5 2.7 23 273-295 5-27 (173)
292 2j41_A Guanylate kinase; GMP, 94.5 0.018 6E-07 52.5 3.1 26 271-296 5-30 (207)
293 2pjz_A Hypothetical protein ST 94.5 0.019 6.7E-07 55.9 3.5 32 264-296 23-54 (263)
294 2v9p_A Replication protein E1; 94.4 0.014 4.8E-07 58.3 2.3 30 266-295 120-149 (305)
295 3nh6_A ATP-binding cassette SU 94.4 0.015 5.1E-07 58.1 2.3 32 264-295 72-103 (306)
296 2jeo_A Uridine-cytidine kinase 94.4 0.02 6.7E-07 54.5 3.0 31 265-295 18-48 (245)
297 2bdt_A BH3686; alpha-beta prot 94.4 0.019 6.3E-07 52.0 2.7 21 274-294 4-24 (189)
298 2bbs_A Cystic fibrosis transme 94.1 0.026 8.8E-07 55.8 3.3 33 264-296 56-88 (290)
299 4eun_A Thermoresistant glucoki 94.1 0.023 7.8E-07 52.2 2.7 23 273-295 30-52 (200)
300 3tui_C Methionine import ATP-b 94.0 0.027 9.2E-07 57.6 3.4 33 264-296 46-78 (366)
301 1bif_A 6-phosphofructo-2-kinas 93.9 0.018 6E-07 60.5 1.8 105 273-386 40-148 (469)
302 3asz_A Uridine kinase; cytidin 93.9 0.026 8.7E-07 51.9 2.7 22 274-295 8-29 (211)
303 3fvq_A Fe(3+) IONS import ATP- 93.8 0.031 1.1E-06 57.0 3.4 33 264-296 22-54 (359)
304 1z47_A CYSA, putative ABC-tran 93.8 0.033 1.1E-06 56.7 3.6 33 264-296 33-65 (355)
305 3b85_A Phosphate starvation-in 93.7 0.025 8.6E-07 53.0 2.4 22 274-295 24-45 (208)
306 2yyz_A Sugar ABC transporter, 93.7 0.034 1.2E-06 56.7 3.5 33 264-296 21-53 (359)
307 1knq_A Gluconate kinase; ALFA/ 93.7 0.03 1E-06 49.8 2.7 22 274-295 10-31 (175)
308 2bbw_A Adenylate kinase 4, AK4 93.7 0.032 1.1E-06 52.8 3.0 21 273-293 28-48 (246)
309 2if2_A Dephospho-COA kinase; a 93.6 0.033 1.1E-06 50.8 3.0 22 273-294 2-23 (204)
310 2it1_A 362AA long hypothetical 93.6 0.036 1.2E-06 56.6 3.4 33 264-296 21-53 (362)
311 3rlf_A Maltose/maltodextrin im 93.6 0.036 1.2E-06 57.0 3.4 33 264-296 21-53 (381)
312 2ehv_A Hypothetical protein PH 93.6 0.034 1.2E-06 52.0 3.0 23 271-293 29-51 (251)
313 4a74_A DNA repair and recombin 93.6 0.031 1.1E-06 51.5 2.7 23 273-295 26-48 (231)
314 1g29_1 MALK, maltose transport 93.6 0.038 1.3E-06 56.6 3.6 33 264-296 21-53 (372)
315 1np6_A Molybdopterin-guanine d 93.5 0.037 1.2E-06 50.6 3.0 25 271-295 5-29 (174)
316 3kb2_A SPBC2 prophage-derived 93.5 0.04 1.4E-06 48.4 3.2 22 274-295 3-24 (173)
317 3lw7_A Adenylate kinase relate 93.5 0.036 1.2E-06 48.4 2.8 19 274-292 3-21 (179)
318 1v43_A Sugar-binding transport 93.5 0.038 1.3E-06 56.6 3.4 33 264-296 29-61 (372)
319 1cke_A CK, MSSA, protein (cyti 93.5 0.037 1.3E-06 51.3 3.0 23 273-295 6-28 (227)
320 2i3b_A HCR-ntpase, human cance 93.3 0.038 1.3E-06 51.0 2.7 22 274-295 3-24 (189)
321 3uie_A Adenylyl-sulfate kinase 93.3 0.039 1.3E-06 50.6 2.7 22 274-295 27-48 (200)
322 3gd7_A Fusion complex of cysti 93.2 0.044 1.5E-06 56.5 3.4 33 264-296 39-71 (390)
323 1lw7_A Transcriptional regulat 93.2 0.035 1.2E-06 56.1 2.6 31 265-295 161-193 (365)
324 2gza_A Type IV secretion syste 93.2 0.033 1.1E-06 56.6 2.3 32 265-296 168-199 (361)
325 1ly1_A Polynucleotide kinase; 93.2 0.045 1.5E-06 48.4 3.0 21 274-294 4-24 (181)
326 3d31_A Sulfate/molybdate ABC t 93.1 0.034 1.2E-06 56.4 2.4 33 264-296 18-50 (348)
327 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.032 1.1E-06 56.0 2.1 32 265-296 164-195 (330)
328 1jjv_A Dephospho-COA kinase; P 93.1 0.047 1.6E-06 50.0 3.0 21 274-294 4-24 (206)
329 2yl4_A ATP-binding cassette SU 93.1 0.042 1.4E-06 59.5 3.1 33 264-296 362-394 (595)
330 2eyu_A Twitching motility prot 93.1 0.041 1.4E-06 53.4 2.7 22 274-295 27-48 (261)
331 3t61_A Gluconokinase; PSI-biol 93.0 0.044 1.5E-06 50.1 2.7 23 273-295 19-41 (202)
332 3ec2_A DNA replication protein 93.0 0.044 1.5E-06 49.1 2.6 24 272-295 38-61 (180)
333 1oxx_K GLCV, glucose, ABC tran 93.0 0.03 1E-06 56.9 1.7 33 264-296 23-55 (353)
334 3cm0_A Adenylate kinase; ATP-b 92.9 0.056 1.9E-06 48.4 3.2 23 272-294 4-26 (186)
335 3b5x_A Lipid A export ATP-bind 92.9 0.047 1.6E-06 58.9 3.1 32 265-296 362-393 (582)
336 2qt1_A Nicotinamide riboside k 92.8 0.058 2E-06 49.5 3.3 26 270-295 19-44 (207)
337 1qhx_A CPT, protein (chloramph 92.8 0.055 1.9E-06 48.1 3.0 22 274-295 5-26 (178)
338 1nks_A Adenylate kinase; therm 92.8 0.058 2E-06 48.1 3.1 22 274-295 3-24 (194)
339 2jaq_A Deoxyguanosine kinase; 92.8 0.055 1.9E-06 48.9 3.0 22 274-295 2-23 (205)
340 3aez_A Pantothenate kinase; tr 92.7 0.048 1.7E-06 54.3 2.7 26 270-295 88-113 (312)
341 4a82_A Cystic fibrosis transme 92.7 0.04 1.4E-06 59.4 2.2 33 264-296 359-391 (578)
342 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.044 1.5E-06 57.7 2.3 32 265-296 131-162 (460)
343 3qf4_B Uncharacterized ABC tra 92.5 0.052 1.8E-06 58.8 2.9 32 265-296 374-405 (598)
344 1y63_A LMAJ004144AAA protein; 92.5 0.066 2.2E-06 48.4 3.1 24 272-295 10-33 (184)
345 2v54_A DTMP kinase, thymidylat 92.5 0.066 2.3E-06 48.6 3.1 24 272-295 4-27 (204)
346 2rhm_A Putative kinase; P-loop 92.4 0.069 2.4E-06 47.9 3.1 23 273-295 6-28 (193)
347 1nij_A Hypothetical protein YJ 92.3 0.056 1.9E-06 53.7 2.6 26 271-296 3-28 (318)
348 1kht_A Adenylate kinase; phosp 92.3 0.069 2.4E-06 47.6 2.9 22 273-294 4-25 (192)
349 3b60_A Lipid A export ATP-bind 92.3 0.067 2.3E-06 57.7 3.3 33 264-296 361-393 (582)
350 2f1r_A Molybdopterin-guanine d 92.2 0.038 1.3E-06 50.2 1.2 23 273-295 3-25 (171)
351 3qf4_A ABC transporter, ATP-bi 92.2 0.055 1.9E-06 58.5 2.6 33 264-296 361-393 (587)
352 3fb4_A Adenylate kinase; psych 92.2 0.076 2.6E-06 48.8 3.2 22 274-295 2-23 (216)
353 2kjq_A DNAA-related protein; s 92.2 0.055 1.9E-06 47.8 2.2 23 273-295 37-59 (149)
354 3dl0_A Adenylate kinase; phosp 92.1 0.081 2.8E-06 48.7 3.2 22 274-295 2-23 (216)
355 1via_A Shikimate kinase; struc 92.1 0.075 2.6E-06 47.3 2.9 23 273-295 5-27 (175)
356 2oap_1 GSPE-2, type II secreti 92.0 0.058 2E-06 57.5 2.4 32 265-296 253-284 (511)
357 3nwj_A ATSK2; P loop, shikimat 91.9 0.055 1.9E-06 52.2 1.9 29 266-294 39-70 (250)
358 2x8a_A Nuclear valosin-contain 91.8 0.073 2.5E-06 51.8 2.7 21 275-295 47-67 (274)
359 1aky_A Adenylate kinase; ATP:A 91.8 0.09 3.1E-06 48.7 3.3 24 272-295 4-27 (220)
360 3b9q_A Chloroplast SRP recepto 91.7 0.077 2.6E-06 52.6 2.8 31 265-295 93-123 (302)
361 1sq5_A Pantothenate kinase; P- 91.7 0.075 2.6E-06 52.5 2.7 24 272-295 80-103 (308)
362 3trf_A Shikimate kinase, SK; a 91.7 0.1 3.4E-06 46.7 3.3 24 272-295 5-28 (185)
363 2pt5_A Shikimate kinase, SK; a 91.6 0.1 3.4E-06 45.8 3.2 22 274-295 2-23 (168)
364 2c95_A Adenylate kinase 1; tra 91.6 0.095 3.2E-06 47.1 3.0 25 271-295 8-32 (196)
365 2plr_A DTMP kinase, probable t 91.6 0.092 3.2E-06 47.6 3.0 23 273-295 5-27 (213)
366 4f4c_A Multidrug resistance pr 91.5 0.068 2.3E-06 63.3 2.5 32 264-295 1097-1128(1321)
367 3jvv_A Twitching mobility prot 91.5 0.08 2.7E-06 53.8 2.7 22 274-295 125-146 (356)
368 1ixz_A ATP-dependent metallopr 91.5 0.084 2.9E-06 50.0 2.7 21 275-295 52-72 (254)
369 2yvu_A Probable adenylyl-sulfa 91.5 0.089 3E-06 47.3 2.7 23 273-295 14-36 (186)
370 1rz3_A Hypothetical protein rb 91.5 0.086 2.9E-06 48.4 2.7 22 273-294 23-44 (201)
371 3iij_A Coilin-interacting nucl 91.5 0.1 3.5E-06 46.6 3.1 24 272-295 11-34 (180)
372 1nn5_A Similar to deoxythymidy 91.4 0.11 3.6E-06 47.5 3.3 23 272-294 9-31 (215)
373 2wwf_A Thymidilate kinase, put 91.4 0.11 3.7E-06 47.4 3.2 24 272-295 10-33 (212)
374 4ido_A Atlastin-1; GTPase, GTP 91.4 0.26 9E-06 51.7 6.5 23 271-293 66-88 (457)
375 3kta_A Chromosome segregation 91.4 0.1 3.5E-06 46.6 3.0 22 274-295 28-49 (182)
376 2pez_A Bifunctional 3'-phospho 91.4 0.093 3.2E-06 46.9 2.7 22 274-295 7-28 (179)
377 2obl_A ESCN; ATPase, hydrolase 91.3 0.08 2.7E-06 53.6 2.4 30 267-296 66-95 (347)
378 1e4v_A Adenylate kinase; trans 91.3 0.11 3.7E-06 48.0 3.2 22 274-295 2-23 (214)
379 1zd8_A GTP:AMP phosphotransfer 91.3 0.11 3.7E-06 48.5 3.2 24 272-295 7-30 (227)
380 2bwj_A Adenylate kinase 5; pho 91.3 0.1 3.4E-06 47.0 2.8 25 271-295 11-35 (199)
381 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.1 3.6E-06 47.8 3.0 21 274-294 25-45 (235)
382 4e22_A Cytidylate kinase; P-lo 91.2 0.1 3.5E-06 49.9 3.0 21 273-293 28-48 (252)
383 1tev_A UMP-CMP kinase; ploop, 91.2 0.11 3.7E-06 46.4 3.0 22 274-295 5-26 (196)
384 1xjc_A MOBB protein homolog; s 91.1 0.12 4.3E-06 46.9 3.2 24 272-295 4-27 (169)
385 1gtv_A TMK, thymidylate kinase 91.0 0.055 1.9E-06 49.5 0.8 22 274-295 2-23 (214)
386 2ewv_A Twitching motility prot 91.0 0.096 3.3E-06 53.4 2.7 24 272-295 136-159 (372)
387 3a4m_A L-seryl-tRNA(SEC) kinas 91.0 0.12 4.1E-06 49.6 3.2 24 272-295 4-27 (260)
388 2pbr_A DTMP kinase, thymidylat 91.0 0.12 4E-06 46.2 3.0 21 274-294 2-22 (195)
389 1cr0_A DNA primase/helicase; R 90.8 0.11 3.6E-06 50.6 2.7 23 273-295 36-58 (296)
390 2z0h_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 46.3 3.0 22 274-295 2-23 (197)
391 3n70_A Transport activator; si 90.8 0.47 1.6E-05 41.0 6.6 23 273-295 25-47 (145)
392 3euj_A Chromosome partition pr 90.7 0.12 4.1E-06 54.7 3.2 31 264-295 22-52 (483)
393 1yqt_A RNAse L inhibitor; ATP- 90.7 0.13 4.3E-06 55.2 3.3 27 270-296 45-71 (538)
394 1iy2_A ATP-dependent metallopr 90.6 0.11 3.9E-06 50.0 2.7 22 274-295 75-96 (278)
395 2vp4_A Deoxynucleoside kinase; 90.6 0.1 3.4E-06 49.1 2.2 24 272-295 20-43 (230)
396 2og2_A Putative signal recogni 90.5 0.11 3.9E-06 52.8 2.8 31 265-295 150-180 (359)
397 1zak_A Adenylate kinase; ATP:A 90.5 0.13 4.5E-06 47.6 3.0 23 273-295 6-28 (222)
398 2cdn_A Adenylate kinase; phosp 90.5 0.15 5E-06 46.5 3.2 23 273-295 21-43 (201)
399 1qf9_A UMP/CMP kinase, protein 90.5 0.14 4.7E-06 45.7 2.9 23 273-295 7-29 (194)
400 1e6c_A Shikimate kinase; phosp 90.5 0.14 4.8E-06 45.0 3.0 22 274-295 4-25 (173)
401 1m7g_A Adenylylsulfate kinase; 90.4 0.15 5E-06 47.1 3.1 25 271-295 24-48 (211)
402 1p9r_A General secretion pathw 90.3 0.12 4.1E-06 53.7 2.7 22 274-295 169-190 (418)
403 1in4_A RUVB, holliday junction 90.3 0.12 4.3E-06 51.4 2.7 23 273-295 52-74 (334)
404 3tqc_A Pantothenate kinase; bi 90.2 0.13 4.3E-06 51.6 2.7 23 273-295 93-115 (321)
405 2vli_A Antibiotic resistance p 90.2 0.11 3.8E-06 46.1 2.1 23 273-295 6-28 (183)
406 3ozx_A RNAse L inhibitor; ATP 90.1 0.13 4.5E-06 55.1 3.0 23 274-296 27-49 (538)
407 3be4_A Adenylate kinase; malar 90.1 0.16 5.4E-06 47.1 3.1 23 273-295 6-28 (217)
408 4f4c_A Multidrug resistance pr 90.1 0.14 4.8E-06 60.6 3.4 34 263-296 435-468 (1321)
409 2iyv_A Shikimate kinase, SK; t 90.1 0.15 5.3E-06 45.5 3.0 22 274-295 4-25 (184)
410 1uf9_A TT1252 protein; P-loop, 90.1 0.14 4.9E-06 46.1 2.7 23 273-295 9-31 (203)
411 1vht_A Dephospho-COA kinase; s 90.1 0.17 5.7E-06 46.7 3.2 22 273-294 5-26 (218)
412 2dpy_A FLII, flagellum-specifi 90.0 0.12 4.1E-06 54.0 2.5 30 267-296 152-181 (438)
413 1yqt_A RNAse L inhibitor; ATP- 90.0 0.14 4.7E-06 54.9 2.9 27 270-296 310-336 (538)
414 1n0w_A DNA repair protein RAD5 89.8 0.15 5.1E-06 47.3 2.7 23 273-295 25-47 (243)
415 2xb4_A Adenylate kinase; ATP-b 89.8 0.17 6E-06 47.1 3.2 22 274-295 2-23 (223)
416 1ukz_A Uridylate kinase; trans 89.7 0.17 6E-06 45.9 3.0 23 273-295 16-38 (203)
417 3g5u_A MCG1178, multidrug resi 89.5 0.16 5.3E-06 60.0 3.2 33 264-296 408-440 (1284)
418 1gvn_B Zeta; postsegregational 89.4 0.17 5.7E-06 49.6 2.8 23 273-295 34-56 (287)
419 2cvh_A DNA repair and recombin 89.4 0.19 6.3E-06 45.9 3.0 21 274-294 22-42 (220)
420 3tlx_A Adenylate kinase 2; str 89.4 0.2 6.8E-06 47.6 3.3 25 271-295 28-52 (243)
421 1jbk_A CLPB protein; beta barr 89.3 0.18 6.1E-06 44.1 2.7 23 273-295 44-66 (195)
422 1zuh_A Shikimate kinase; alpha 89.3 0.2 6.7E-06 44.1 3.0 23 273-295 8-30 (168)
423 4aby_A DNA repair protein RECN 89.3 0.08 2.7E-06 53.9 0.4 29 264-293 53-81 (415)
424 3j16_B RLI1P; ribosome recycli 89.3 0.17 5.9E-06 55.1 3.0 23 274-296 105-127 (608)
425 1svm_A Large T antigen; AAA+ f 89.1 0.14 5E-06 52.4 2.2 25 271-295 168-192 (377)
426 3bk7_A ABC transporter ATP-bin 89.1 0.17 5.9E-06 55.0 2.9 27 270-296 380-406 (607)
427 1ak2_A Adenylate kinase isoenz 89.1 0.22 7.5E-06 46.7 3.3 23 273-295 17-39 (233)
428 3bk7_A ABC transporter ATP-bin 89.0 0.19 6.7E-06 54.6 3.2 26 271-296 116-141 (607)
429 1odf_A YGR205W, hypothetical 3 89.0 0.18 6.2E-06 49.6 2.7 24 272-295 31-54 (290)
430 3ozx_A RNAse L inhibitor; ATP 89.0 0.18 6E-06 54.1 2.8 28 269-296 291-318 (538)
431 2ze6_A Isopentenyl transferase 89.0 0.19 6.4E-06 48.2 2.7 22 274-295 3-24 (253)
432 2iw3_A Elongation factor 3A; a 88.8 0.15 5E-06 58.5 2.2 34 263-296 690-723 (986)
433 3qf7_A RAD50; ABC-ATPase, ATPa 88.8 0.23 7.9E-06 50.3 3.5 20 274-293 25-44 (365)
434 2p5t_B PEZT; postsegregational 88.8 0.15 5.2E-06 48.6 2.0 24 272-295 32-55 (253)
435 1f2t_A RAD50 ABC-ATPase; DNA d 88.8 0.23 7.7E-06 43.7 3.0 19 275-293 26-44 (149)
436 4eaq_A DTMP kinase, thymidylat 88.7 0.21 7.3E-06 47.1 2.9 25 271-295 25-49 (229)
437 3sr0_A Adenylate kinase; phosp 88.6 0.24 8.4E-06 46.2 3.2 22 274-295 2-23 (206)
438 4b4t_J 26S protease regulatory 88.4 0.96 3.3E-05 46.7 7.8 23 273-295 183-205 (405)
439 1lv7_A FTSH; alpha/beta domain 88.1 0.25 8.7E-06 46.7 3.0 24 272-295 45-68 (257)
440 3g5u_A MCG1178, multidrug resi 88.0 0.24 8.2E-06 58.5 3.4 31 265-295 1052-1082(1284)
441 1sxj_A Activator 1 95 kDa subu 87.8 0.87 3E-05 48.1 7.3 23 273-295 78-100 (516)
442 4b4t_H 26S protease regulatory 87.7 0.87 3E-05 47.9 7.1 26 270-295 241-266 (467)
443 2iw3_A Elongation factor 3A; a 87.7 0.28 9.5E-06 56.2 3.5 31 265-295 454-484 (986)
444 4b4t_L 26S protease subunit RP 87.5 0.96 3.3E-05 47.2 7.3 23 273-295 216-238 (437)
445 1ltq_A Polynucleotide kinase; 87.4 0.28 9.6E-06 47.5 3.0 21 274-294 4-24 (301)
446 1uj2_A Uridine-cytidine kinase 87.1 0.34 1.2E-05 46.0 3.3 24 272-295 22-45 (252)
447 3bos_A Putative DNA replicatio 87.1 0.29 1E-05 44.8 2.7 23 273-295 53-75 (242)
448 4b4t_K 26S protease regulatory 87.1 0.74 2.5E-05 47.9 6.0 22 274-295 208-229 (428)
449 2grj_A Dephospho-COA kinase; T 87.0 0.33 1.1E-05 44.7 3.0 23 273-295 13-35 (192)
450 1nlf_A Regulatory protein REPA 86.9 0.31 1.1E-05 46.9 2.9 26 269-294 27-52 (279)
451 3ake_A Cytidylate kinase; CMP 86.9 0.31 1.1E-05 44.0 2.7 22 274-295 4-25 (208)
452 3j16_B RLI1P; ribosome recycli 86.8 0.31 1E-05 53.1 3.0 24 274-297 380-403 (608)
453 3ux8_A Excinuclease ABC, A sub 86.7 0.21 7.1E-06 54.7 1.7 29 265-293 341-369 (670)
454 1q3t_A Cytidylate kinase; nucl 86.7 0.35 1.2E-05 45.3 3.1 22 273-294 17-38 (236)
455 2w58_A DNAI, primosome compone 86.6 0.33 1.1E-05 44.0 2.7 23 273-295 55-77 (202)
456 2p65_A Hypothetical protein PF 86.6 0.25 8.6E-06 43.2 1.9 23 273-295 44-66 (187)
457 3cr8_A Sulfate adenylyltranfer 86.3 0.25 8.6E-06 53.1 2.0 25 271-295 368-392 (552)
458 2f6r_A COA synthase, bifunctio 86.1 0.36 1.2E-05 46.9 2.9 22 273-294 76-97 (281)
459 4b4t_M 26S protease regulatory 86.1 0.99 3.4E-05 47.0 6.4 24 272-295 215-238 (434)
460 3r20_A Cytidylate kinase; stru 86.0 0.42 1.4E-05 45.6 3.2 24 272-295 9-32 (233)
461 4b4t_I 26S protease regulatory 86.0 1.3 4.5E-05 46.1 7.2 23 273-295 217-239 (437)
462 1qhl_A Protein (cell division 85.9 0.086 3E-06 50.2 -1.7 21 275-295 30-50 (227)
463 3te6_A Regulatory protein SIR3 85.8 0.56 1.9E-05 46.9 4.1 25 271-295 44-68 (318)
464 3gmt_A Adenylate kinase; ssgci 85.6 0.44 1.5E-05 45.4 3.2 23 273-295 9-31 (230)
465 1njg_A DNA polymerase III subu 85.6 0.4 1.4E-05 43.4 2.7 22 274-295 47-68 (250)
466 2dr3_A UPF0273 protein PH0284; 85.2 0.44 1.5E-05 44.1 2.9 20 274-293 25-44 (247)
467 3zvl_A Bifunctional polynucleo 85.2 0.41 1.4E-05 49.3 2.9 23 273-295 259-281 (416)
468 3qks_A DNA double-strand break 85.0 0.46 1.6E-05 43.8 3.0 20 274-293 25-44 (203)
469 3b9p_A CG5977-PA, isoform A; A 84.7 0.43 1.5E-05 46.0 2.7 23 273-295 55-77 (297)
470 2chg_A Replication factor C sm 84.6 0.47 1.6E-05 42.4 2.7 22 274-295 40-61 (226)
471 3umf_A Adenylate kinase; rossm 84.6 0.5 1.7E-05 44.5 3.0 27 269-295 26-52 (217)
472 2zan_A Vacuolar protein sortin 84.2 1.7 5.9E-05 44.9 7.2 23 273-295 168-190 (444)
473 3vfd_A Spastin; ATPase, microt 84.1 1.7 5.7E-05 43.9 6.9 23 273-295 149-171 (389)
474 1p5z_B DCK, deoxycytidine kina 84.0 0.39 1.3E-05 45.8 2.0 25 271-295 23-47 (263)
475 2qz4_A Paraplegin; AAA+, SPG7, 83.8 0.55 1.9E-05 44.0 3.0 26 270-295 37-62 (262)
476 1zcb_A G alpha I/13; GTP-bindi 83.7 0.57 2E-05 47.5 3.2 24 269-292 30-53 (362)
477 3h4m_A Proteasome-activating n 83.6 0.51 1.8E-05 45.0 2.7 25 271-295 50-74 (285)
478 2qby_A CDC6 homolog 1, cell di 83.6 0.5 1.7E-05 46.5 2.7 23 273-295 46-68 (386)
479 1e69_A Chromosome segregation 83.4 0.51 1.7E-05 46.7 2.6 20 274-293 26-45 (322)
480 3cf0_A Transitional endoplasmi 83.3 0.57 1.9E-05 45.7 2.9 25 271-295 48-72 (301)
481 1tf7_A KAIC; homohexamer, hexa 82.9 0.5 1.7E-05 50.1 2.5 24 269-292 36-59 (525)
482 1tue_A Replication protein E1; 82.9 0.45 1.5E-05 44.9 1.9 22 274-295 60-81 (212)
483 1sxj_E Activator 1 40 kDa subu 82.9 0.49 1.7E-05 46.7 2.2 23 273-295 37-59 (354)
484 2ius_A DNA translocase FTSK; n 82.7 0.59 2E-05 49.8 2.9 34 259-294 156-189 (512)
485 3ea0_A ATPase, para family; al 82.6 2.3 7.9E-05 39.2 6.7 67 328-406 120-186 (245)
486 1fnn_A CDC6P, cell division co 82.5 0.59 2E-05 46.3 2.7 22 274-295 46-67 (389)
487 1l8q_A Chromosomal replication 82.5 0.6 2E-05 45.7 2.7 23 273-295 38-60 (324)
488 1pzn_A RAD51, DNA repair and r 82.5 0.55 1.9E-05 47.2 2.5 27 269-295 128-154 (349)
489 3kjh_A CO dehydrogenase/acetyl 82.2 1.9 6.4E-05 39.8 5.9 63 328-404 133-195 (254)
490 3t15_A Ribulose bisphosphate c 82.1 0.62 2.1E-05 45.4 2.6 23 273-295 37-59 (293)
491 1sxj_C Activator 1 40 kDa subu 82.0 0.65 2.2E-05 45.9 2.8 24 272-295 46-69 (340)
492 3k9g_A PF-32 protein; ssgcid, 82.0 2.2 7.6E-05 40.3 6.5 64 328-404 146-209 (267)
493 2ga8_A Hypothetical 39.9 kDa p 81.9 0.69 2.4E-05 47.0 2.9 23 273-295 25-47 (359)
494 2ocp_A DGK, deoxyguanosine kin 81.7 0.73 2.5E-05 43.2 2.9 22 274-295 4-25 (241)
495 2qmh_A HPR kinase/phosphorylas 81.6 0.79 2.7E-05 43.0 3.0 24 273-296 35-58 (205)
496 3qkt_A DNA double-strand break 81.6 0.73 2.5E-05 45.9 3.0 19 275-293 26-44 (339)
497 4fcw_A Chaperone protein CLPB; 81.5 0.69 2.3E-05 44.6 2.7 22 274-295 49-70 (311)
498 2o5v_A DNA replication and rep 81.2 0.79 2.7E-05 46.5 3.1 27 267-294 22-48 (359)
499 1ofh_A ATP-dependent HSL prote 80.9 0.76 2.6E-05 44.0 2.7 23 273-295 51-73 (310)
500 3syl_A Protein CBBX; photosynt 80.8 0.74 2.5E-05 44.4 2.7 23 273-295 68-90 (309)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=1.3e-73 Score=585.55 Aligned_cols=324 Identities=41% Similarity=0.670 Sum_probs=293.5
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 011645 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (480)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (480)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------~~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVA--------------FRREKY----VPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDF 58 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCC--------------BCCCSS----SCCCCBCCC----CCCCCCCEEEEECTTCCCSCGG
T ss_pred CCcceEEEEEEecCCCCceee--------------eehhhc----ccCCCCCCC----CCCCCCeEEEEeCCCcChHHHh
Confidence 599999999999999999997 889987 899999998 9999999999999999999999
Q ss_pred cccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccch
Q 011645 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (480)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~ 233 (480)
+++++|+|++|+||. +++++|++|+|++|+||+||+|+| +++++++||+++++++++|+||.||.||.+|...
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 132 (342)
T 1lnz_A 59 RYKKHFKAIRGEHGM------SKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP 132 (342)
T ss_dssp GTCCEEECCCCCCCC------STTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT
T ss_pred CccceEEcCCCCCCC------CCCCcCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccc
Confidence 999999999999986 378999999999999999999998 5789999999999999999999999999887644
Q ss_pred hhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee
Q 011645 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (480)
Q Consensus 234 ~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~ 313 (480)
.+ ++|++++.+++||++.+.+|||.+++|+|+|+||||||||||+|+++++.+++|||||++|+.+.
T Consensus 133 ~~-------------~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~ 199 (342)
T 1lnz_A 133 AN-------------PAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM 199 (342)
T ss_dssp TB-------------SSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE
T ss_pred cc-------------cccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE
Confidence 32 34567789999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC---CCChhhHHHHHHHHHhhCCCC
Q 011645 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDY 390 (480)
Q Consensus 314 v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~---~~~~~~~~~l~~eL~~~~~~l 390 (480)
+..+.. ..++||||||+++++++..++...|++|+++||++|||+|+++ .++++++..|..+|..|.+.+
T Consensus 200 v~~~~~-------~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 200 VETDDG-------RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp EECSSS-------CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred EEeCCC-------ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence 876531 3799999999999988889999999999999999999999998 788899999999999998777
Q ss_pred CCCCEEEEEeCCCCcChHHHHHHHHHHHHh-cCceeeecccccCHHHHHHHHHHhcC
Q 011645 391 LERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 391 ~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
..+|+++|+||+|+....+..+.+.+.+.. ..+.++|+.+++|+++++++|...+.
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 889999999999998766555555555433 45778999999999999999987763
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=1.2e-66 Score=546.29 Aligned_cols=322 Identities=42% Similarity=0.644 Sum_probs=289.1
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 011645 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (480)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (480)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~re~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVS--------------FRREKF----VPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL 58 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCC--------------BCCBTT----BSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS
T ss_pred CCcceEEEEEEecCCCCceee--------------eecccc----ccCCCCCCC----CCCCCCeEEEEeCCCcCchhhh
Confidence 599999999999999999997 788987 899999998 9999999999999999999999
Q ss_pred cccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCceEEeecCCCCCCCCCCccch
Q 011645 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (480)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~-~~~~~~~dl~~~~~~~~~a~GG~GG~gn~~~~~~ 233 (480)
++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||++++|++++|+||.||+||.+|.+.
T Consensus 59 -~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 131 (416)
T 1udx_A 59 -SKRTYKAEDGEHGR------GSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSP 131 (416)
T ss_dssp -CSSCEECCCCCCCB------TTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCS
T ss_pred -hhceEEcCCCCCCC------CCCCcCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecc
Confidence 89999999999986 378999999999999999999998 6789999999999999999999999999887654
Q ss_pred hhcccccccccccccchHHHHhcCCCCcEEeeehhheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecccee
Q 011645 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (480)
Q Consensus 234 ~r~~~~~~~~~~~~~~~~~~~~~g~~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~ 313 (480)
++ ++|++++.|++||++.+.|+++.+++|+|||+|||||||||++|++..+.+++|+|||+.|+.+.
T Consensus 132 ~~-------------~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~ 198 (416)
T 1udx_A 132 TR-------------QAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV 198 (416)
T ss_dssp SC-------------SSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE
T ss_pred cc-------------cCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE
Confidence 32 35677899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCC
Q 011645 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (480)
Q Consensus 314 v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (480)
+.... ...++++||||+++.+++..++...|++++++++.+|+|+|++ ..+.+++..+..++..+...+..+
T Consensus 199 V~~~~-------~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~ 270 (416)
T 1udx_A 199 VEVSE-------EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRR 270 (416)
T ss_dssp EECSS-------SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred EEecC-------cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcC
Confidence 87643 1368999999999988888888889999999999999999998 677888888888998887555679
Q ss_pred CEEEEEeCCCCcChHHHHHHHHHHHHhc--CceeeecccccCHHHHHHHHHHhcCc
Q 011645 394 PFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 394 p~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
|.++|+||+|+... +.++.+.+.+... .+..+++++++|++++++++.+.+..
T Consensus 271 P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 271 PSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp CEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 99999999999876 5566676666654 45688999999999999999877643
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=9e-28 Score=256.12 Aligned_cols=290 Identities=20% Similarity=0.188 Sum_probs=192.0
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCccCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 011645 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (480)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (480)
..|+|++.|.+..| +.| |++|++ ++ -|||||.||++ ..+++|++
T Consensus 86 ~~~iDe~~v~~~~~-----p~S--------------ft~Ed~----ve-----------~~~hGg~~v~~--~~l~~l~~ 129 (482)
T 1xzp_A 86 GEDVDEVVVVFYKS-----PKS--------------YTGEDM----VE-----------VMCHGGPLVVK--KLLDLFLK 129 (482)
T ss_dssp SCCCCEEEEEEECT-----TSS--------------SSSSCE----EE-----------EEECSCHHHHH--HHHHHHHT
T ss_pred CeeeeEEEEEEEeC-----CCc--------------CCCCCE----ee-----------ecCcCcHHHHH--HHHHHHHH
Confidence 46999999999997 654 778876 22 47999999976 55888887
Q ss_pred ccccceEeccCCCCCCCCCcCcccCCCCCCCCCEEEecCCCcEEEcc-CCceeeccCCCCc---eEEeecCCCCCCCCCC
Q 011645 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGD---EVLVARGGRGGISLLE 229 (480)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~Gt~v~~~-~~~~~~dl~~~~~---~~~~a~GG~GG~gn~~ 229 (480)
+ ....|+.|+..+ +...+|+ .|. +.+.++||.+... ..++++++.|+.++..
T Consensus 130 ~---g~r~A~~Geft~---------raf~nGk------------~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~ 185 (482)
T 1xzp_A 130 S---GARMAEPGEFTK---------RAFLNGK------------MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFV 185 (482)
T ss_dssp T---TCEECCTTHHHH---------HHHHTTS------------SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHH
T ss_pred c---CCEeCCCCCcCC---------cCCCcCC------------cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHH
Confidence 6 345677777543 1223333 132 3578899876654 3478899999988631
Q ss_pred ccchhhcccccccccccccchHHHHhcCCCC-------cEEeeehhhe-------------ecceEEEecCCCCChHHHH
Q 011645 230 VPENRRKRMTTLTTNIMRDDTDKVLVLGQHG-------EEVSLELILR-------------VVADVGLVGLPNAGKSTLL 289 (480)
Q Consensus 230 ~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~G-------e~~~l~l~lk-------------~~~~V~lvG~pNaGKSSLl 289 (480)
- ..|..-..+.+. + +....+.+. -++ +...+..+|+ ..++|+|+|.||||||||+
T Consensus 186 ~--~~r~~l~~~~~~-i-e~~idf~ee-i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 186 D--SLRRELIEVLAE-I-RVELDYPDE-IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp H--HHHHHHHHHHHH-H-HHHHHSTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred H--HHHHHHHHHHHH-h-hhcCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence 0 011000000000 0 000111110 011 0112223333 3489999999999999999
Q ss_pred HHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccc-ccccccCccch-hhhhhhccCCEEEEecc
Q 011645 290 AAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLGR-NFLRHLRRTRLLVHVID 366 (480)
Q Consensus 290 naLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGli-e~a~~~~gl~~-~fl~~i~~ad~ll~VvD 366 (480)
|+|++.+. .++++|+||+++....+..+. ..+.+|||||+. +....-+.++. .++.+++.||++|+|+|
T Consensus 261 n~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--------~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD 332 (482)
T 1xzp_A 261 NRLLNEDRAIVTDIPGTTRDVISEEIVIRG--------ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD 332 (482)
T ss_dssp HHHHHHTBCCCCCSSCCSSCSCCEEEEETT--------EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHCCCCCccCCCCCeeeeeEEEEEecCC--------eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEec
Confidence 99999874 569999999999888887653 379999999998 66544444432 34678999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-cCceeeecccccCHHHHHHHHHHhc
Q 011645 367 AAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 367 ~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.+.++.+. ++.+ .++|+++|+||+|+..... .+++.+.+.. ..+.++|+++++|+++++++|....
T Consensus 333 ~s~~~s~~~~~i-l~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 333 ASSPLDEEDRKI-LERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TTSCCCHHHHHH-HHHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHH-HHHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 998877666543 3333 2689999999999975311 2233332221 3567899999999999999998764
No 4
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-23 Score=217.03 Aligned_cols=161 Identities=26% Similarity=0.440 Sum_probs=125.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-.++|+|||+||||||||+|+|+++++.+++|||||++|+.|.+.+.+ .+++++||||++++++++++++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--------~~i~l~D~pGl~~~a~~~~~~g~~ 142 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--------AKIQMLDLPGIIDGAKDGRGRGKQ 142 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--------EEEEEEECGGGCCC-----CHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--------cEEEEEeCCCccCCchhhhHHHHH
Confidence 347899999999999999999999999999999999999999998764 379999999999999999999999
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh---------HHHHHHHHHHHHhc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---------RDRLQSLTEEILKI 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~---------~e~~~~l~~~l~~~ 421 (480)
|+.++++||++++|+|++ ++..+.+.+..||..+...+..+|.++++||+|...- ....+++...+...
T Consensus 143 ~l~~i~~ad~il~vvD~~--~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~ 220 (376)
T 4a9a_A 143 VIAVARTCNLLFIILDVN--KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY 220 (376)
T ss_dssp HHHHHHHCSEEEEEEETT--SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHhcCccccccccC--ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence 999999999999999998 4578888999999998877778999999999996421 00112233333333
Q ss_pred C--ceeeecccccCHHHHHHHH
Q 011645 422 G--CDKVTSETELSSEDAVKSL 441 (480)
Q Consensus 422 g--~~~~sa~t~~Gi~~ll~~L 441 (480)
. ..++....+...+++++.+
T Consensus 221 ~lt~kpv~~~~nv~eddl~d~~ 242 (376)
T 4a9a_A 221 RINSAEIAFRCDATVDDLIDVL 242 (376)
T ss_dssp TCCSEEEEECSCCCHHHHHHHH
T ss_pred cccCCCeeecccCCHHHHHHHH
Confidence 2 3344445566777777655
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=3.6e-20 Score=186.34 Aligned_cols=164 Identities=27% Similarity=0.313 Sum_probs=123.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc---cccCccch
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA---HLGKGLGR 349 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a---~~~~gl~~ 349 (480)
.|+++|.||||||||+|+|++.+..+ +++++||.+...+.+.... ..++++|||||+.+.. ..++.+..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~-------~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-------EAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-------TEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC-------CCeEEEEECcCCCccccchhHHHHHHH
Confidence 49999999999999999999998765 8899999888777765431 1379999999997643 11223444
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc-ChHHHHHHHHHHHHh----cCce
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEILK----IGCD 424 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~-~~~e~~~~l~~~l~~----~g~~ 424 (480)
.+..++..+|++++|+|+++....++...|.+.+.. .+.|+++|+||+|+. ......+.+...... ..+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 556778899999999999988777776665666665 358999999999997 433222222222222 3467
Q ss_pred eeecccccCHHHHHHHHHHhcCccc
Q 011645 425 KVTSETELSSEDAVKSLSTEGGEAD 449 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~~~~ 449 (480)
++|+.++.|++++++.+........
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCC
Confidence 8999999999999999998875543
No 6
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.80 E-value=8.7e-21 Score=197.71 Aligned_cols=166 Identities=34% Similarity=0.568 Sum_probs=98.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCC-----CCCC----------cccc-CCceEEecCCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-----PTLG----------AEKY-SSEATLADLPG 336 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~-----~~~~----------~~~~-~~~~~l~DTPG 336 (480)
.+|+|+|.||||||||+|+|++.+..+++|||||++++.|.+.+. ..+. .... ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 379999999999999999999988667899999999999864211 0000 0000 12689999999
Q ss_pred ccccccccCccchhhhhhhccCCEEEEecccCCC-----------CChhhHHHHHHHHHhhC------------------
Q 011645 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYN------------------ 387 (480)
Q Consensus 337 lie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~-----------~~~~~~~~l~~eL~~~~------------------ 387 (480)
+.++++..++++..|+.+++.||++++|+|+++. +|.++++.|..||..++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 9988888888999999999999999999999886 67777777777765430
Q ss_pred ------------------------------C-------------------CCCCCCEEEEEeCCCCcChHHHHHHHHHHH
Q 011645 388 ------------------------------P-------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 418 (480)
Q Consensus 388 ------------------------------~-------------------~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l 418 (480)
. .+..+|+++|+||+|+. ..+.++.+.+.+
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~ 239 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREE 239 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHH
Confidence 0 00248999999999988 445566666655
Q ss_pred Hhc--CceeeecccccCHHHHHH
Q 011645 419 LKI--GCDKVTSETELSSEDAVK 439 (480)
Q Consensus 419 ~~~--g~~~~sa~t~~Gi~~ll~ 439 (480)
... .+.++|+..+.++.++++
T Consensus 240 ~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 240 EKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHTTCEEEEECHHHHHHHHSCSS
T ss_pred hhcCCcEEEEeccchhhHHHHHh
Confidence 533 356788888888776544
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=166.05 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=118.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQERF-------RT 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------CT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEECCCcHhh-------hh
Confidence 45678999999999999999999987765555566665555444443321 126899999997432 33
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHH--hcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~--~~g~~~~ 426 (480)
.+..++..+|++++|+|+++..+++....++.++..+.. ...|+++|+||+|+...... .+...+... ...+.++
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 345667889999999999988777778888888877653 36899999999999754211 112222222 2467789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.++.|+++++++|....
T Consensus 159 Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998766
No 8
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.5e-19 Score=160.58 Aligned_cols=159 Identities=26% Similarity=0.295 Sum_probs=105.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
+++|+++|.+|||||||+++|.+.... ..+++.+|.+.....+.... ..+.+|||||+.+.......+...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 72 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--------GRFLLVDTGGLWSGDKWEKKIQEK 72 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--------EEEEEEECGGGCSSSSCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--------ceEEEEECCCCCCccchHHHHHHH
Confidence 368999999999999999999988754 47778888777666554432 368999999987543212223344
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeeccc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 430 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t 430 (480)
+..++..+|++++|+|+++...... ..+.+.+.. ...|+++|+||+|+....+....+. .+....+.++|+++
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 73 VDRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp HHHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTT
T ss_pred HHHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEeccc
Confidence 5567889999999999998654433 234444443 3589999999999986543333332 11111467999999
Q ss_pred ccCHHHHHHHHHHhc
Q 011645 431 ELSSEDAVKSLSTEG 445 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~ 445 (480)
+.|++++++++.+.+
T Consensus 146 ~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 ARGLEELLEAIWERL 160 (161)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHhC
Confidence 999999999987653
No 9
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=1.2e-19 Score=193.22 Aligned_cols=166 Identities=20% Similarity=0.187 Sum_probs=99.9
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
.++...+|+|+|.||||||||+|+|++.+. .++++|+||.+.....+..+. ..+.+|||||+.+....-+.
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--------~~l~liDT~G~~~~~~~ve~ 300 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--------TMFRLTDTAGLREAGEEIEH 300 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--------EEEEEEC-------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCCCcchhHHHH
Confidence 566778999999999999999999998865 458899999998877776543 27999999999764322121
Q ss_pred cc-hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-HHHHHHHHhcCce
Q 011645 347 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCD 424 (480)
Q Consensus 347 l~-~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-~~l~~~l~~~g~~ 424 (480)
++ ...+.++..||++|||+|++++...+....+.+.+... .++|+++|+||+|+....... +.+.+. ....+.
T Consensus 301 ~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i 375 (476)
T 3gee_A 301 EGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALIRAIADG-TGTEVI 375 (476)
T ss_dssp -------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEE
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhHHHHHhc-CCCceE
Confidence 11 22456788999999999999987776544444444432 268999999999998654321 112221 124677
Q ss_pred eeecccccCHHHHHHHHHHhcC
Q 011645 425 KVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++|+++++|++++++++.....
T Consensus 376 ~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 376 GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHh
Confidence 8999999999999999987664
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=159.71 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=114.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...++|+|+|.+|||||||+++|++........+.+|.+.....+..... ...+.+|||||..+. ..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 73 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------KVKLQIWDTAGQERF-------RT 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE------EEEEEEEEETTGGGC-------SS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE------EEEEEEEcCCCchhh-------hh
Confidence 35678999999999999999999987766555666665555444443321 126899999997442 23
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHH--hcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~--~~g~~~~ 426 (480)
.+..++..+|++++|+|++++.+++....+..++.... ...|+++|+||+|+...... .+....... ...+.++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFET 150 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEE
Confidence 34556788999999999998777777777777777654 36899999999998754211 112222222 3466789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|++++++++....
T Consensus 151 Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELV 169 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 11
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.79 E-value=2.8e-19 Score=160.06 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=108.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+. ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQIWDTAGQERF-------RTIT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC------EEEEEEECCTTGGGT-------SCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEeCCCChhh-------hhhH
Confidence 368999999999999999999987654444444443333333332211 126899999997542 2234
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~~sa 428 (480)
..+++.+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+.... +..+.+.+.+ ...+.++|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 146 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIESSA 146 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-TCCEEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHc-CCeEEEEEC
Confidence 5567889999999999987777777777777776542 368999999999995422 2233333222 245678999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++++++....
T Consensus 147 ~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998665
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=2.4e-19 Score=180.15 Aligned_cols=162 Identities=24% Similarity=0.247 Sum_probs=115.7
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~f 351 (480)
.|+|+|.||||||||+|+|++.+..+ ++.|.||.+...+.+.... .++.+|||||+.+..+ .++.+...+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--------~~l~l~DTpG~~~~~~~l~~~~~~~~ 80 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--------RQIVFVDTPGLHKPMDALGEFMDQEV 80 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--------EEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--------cEEEEecCccccchhhHHHHHHHHHH
Confidence 59999999999999999999998765 7888999876666554321 3799999999875321 111234445
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHH-HhcCceeeeccc
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSET 430 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l-~~~g~~~~sa~t 430 (480)
..+++.+|++++|+|+++.....+ ..+.+.+..+. .+.|+++|+||+|+....+.+....+.+ ....+.++|+.+
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTC
T ss_pred HHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCC
Confidence 677889999999999998655443 33445565532 2689999999999986544122222222 111245789999
Q ss_pred ccCHHHHHHHHHHhcCc
Q 011645 431 ELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~~~ 447 (480)
+.|++++++.+......
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999877643
No 13
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=4.6e-19 Score=165.45 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=112.3
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
....++|+|+|.+|||||||+++|++.+......+.++.+.....+..+.. ...+.+|||||..+. .
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~ 83 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQLWDTAGQERF-------R 83 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE------EEEEEEECCTTGGGG-------T
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------H
Confidence 345679999999999999999999987654444444444333333332210 126899999997543 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCcee
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDK 425 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~ 425 (480)
..+..++..+|++++|+|+++..+++....++.++..+.. ...|+++|+||+|+.... +....+...+ .+.+.+
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 160 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIE 160 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHc-CCEEEE
Confidence 2345667889999999999987777777777777776543 368999999999995322 2223333222 345778
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.++.|+++++++|....
T Consensus 161 ~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 161 SSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp CBTTTTBSSHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 14
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.78 E-value=4.2e-19 Score=161.89 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=111.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+|+|.+|||||||+|+|++... ...++.|+.+.....+..+.. ...+.+|||||..+. ...+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 69 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMR 69 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTE------EEEEEEEECCCC----------CTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCc------EEEEEEEECCCcHHH-------HHHH
Confidence 35899999999999999999997653 345555554443333332211 124788999997542 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~~sa 428 (480)
..++..+|++++|+|+++..+++....+..++..+.. ..+.|+++|+||+|+.... +..+.+...+ ...+.++|+
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 147 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY-GIPFIETSA 147 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH-TCCEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCHHHHHHHHHHc-CCeEEEEeC
Confidence 4556779999999999987777777777777776542 2468999999999997542 2233333322 345678999
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
.++.|+++++++|.....
T Consensus 148 ~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 148 KTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 15
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=1.1e-18 Score=160.15 Aligned_cols=164 Identities=14% Similarity=0.065 Sum_probs=108.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC------------------------------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL------------------------------ 320 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~------------------------------ 320 (480)
...+|+|+|.+|||||||+|+|++........+.++.+.....+..+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 34689999999999999999999876432222222122222222221100
Q ss_pred -CccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEE
Q 011645 321 -GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 399 (480)
Q Consensus 321 -~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~ 399 (480)
........+.+|||||..+. ...+..++..+|++++|+|++++.+++....|..++..+. ..|+++|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~ 154 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERY-------ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVA 154 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGC-------TTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEE
T ss_pred ccCccceeEEEEEECCCcHHH-------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEE
Confidence 00000036899999997542 2234566788999999999998777777777777777654 38999999
Q ss_pred eCCCCcChHHHHHHHHHHHHhcC--ceeeecccccCHHHHHHHHHHhc
Q 011645 400 NKIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 400 NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
||+|+.......+++.+.+...+ +.++|++++.|+++++++|....
T Consensus 155 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 155 NKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp ECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99994322222344444454444 56889999999999999997654
No 16
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=165.27 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=106.3
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.....+|+|+|.+|||||||+++|++.. ....++.|+.+.....+..+.. ...+.+|||||..+. .
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~ 82 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGR------PVRLQLCDTAGQDEF-------D 82 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTE------EEEEEEEECCCSTTC-------S
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCE------EEEEEEEECCCCHHH-------H
Confidence 3456799999999999999999999765 3345555654443333322210 125779999998543 1
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----------------HHH
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRL 411 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----------------e~~ 411 (480)
..+..++..+|++++|+|++++.+++... .|..++..+. ...|+++|+||+|+.... +..
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 22334677899999999999877777765 5777777664 368999999999997532 122
Q ss_pred HHHHHHHHhcCceeeecccccCHHHHHHHHHHhc
Q 011645 412 QSLTEEILKIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 412 ~~l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+...+....+.++|++++.|++++++++....
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 2222222222567899999999999999998665
No 17
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=5.9e-19 Score=166.41 Aligned_cols=162 Identities=20% Similarity=0.186 Sum_probs=115.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC-C-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc----
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 344 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~-~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~---- 344 (480)
..++|+|+|.+|||||||+|+|++.+ . .+.+++++|.+.....+.... ...+.||||||+.+.....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHH
Confidence 35789999999999999999999886 2 558888898877665554111 1379999999986532111
Q ss_pred --CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHH
Q 011645 345 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL 419 (480)
Q Consensus 345 --~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~ 419 (480)
..+...+++....+|+++||+|+++.....+ ..+...+.. ..+|+++|+||+|+....+ ..+.+.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLD 174 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence 1123345555566899999999997654333 334455554 3589999999999987544 2344444444
Q ss_pred hc---------CceeeecccccCHHHHHHHHHHhc
Q 011645 420 KI---------GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~~---------g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.. .+.++|++++.|+++++++|....
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 42 356889999999999999998776
No 18
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.2e-19 Score=161.38 Aligned_cols=162 Identities=16% Similarity=0.045 Sum_probs=110.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++........+..+.+.....+..+.. ...+.+|||||..+. ...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~ 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN------KAKLAIWDTAGQERF-------RTL 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE------EEEEEEEEECSSGGG-------CCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCe------EEEEEEEeCCCchhh-------hhh
Confidence 3468999999999999999999987654322332222222222222110 126899999997542 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC--ceeeec
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTS 428 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa 428 (480)
+..++..+|++|+|+|++++..++....|..++..+.. ....|+++|+||+|+.......+...+.....+ +.++++
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA 159 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 45667889999999999987777777777777765431 246899999999999643222223333344444 568899
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++.|+++++++|.....
T Consensus 160 ~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 160 KTCDGVQCAFEELVEKII 177 (195)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=6.6e-20 Score=167.64 Aligned_cols=158 Identities=22% Similarity=0.244 Sum_probs=112.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC--ccc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLG 348 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~--gl~ 348 (480)
..+|+|+|.+|||||||+|+|++.... +.++++||.+...+.+..+. ..+.+|||||+.+....-+ ++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 75 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIE 75 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--------eEEEEEECCCcccchhHHHHHHHH
Confidence 358999999999999999999987753 57889999877666665432 2689999999865321111 111
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCceeeec
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa 428 (480)
. ...+++.+|++++|+|+++..+++. ..|+.++..... .+.|+++|+||+|+...... +.+ .....+.++|+
T Consensus 76 ~-~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~---~~~-~~~~~~~~~SA 147 (172)
T 2gj8_A 76 R-AWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP--AKLPITVVRNKADITGETLG---MSE-VNGHALIRLSA 147 (172)
T ss_dssp H-HHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE---EEE-ETTEEEEECCT
T ss_pred H-HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc--cCCCEEEEEECccCCcchhh---hhh-ccCCceEEEeC
Confidence 1 2356789999999999998777654 345566665432 36899999999998542110 000 01234568999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
++++|+++++++|....
T Consensus 148 ~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TTCTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 20
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=1.1e-18 Score=157.85 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=106.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++........+.++.+.....+..+.. ....+.+|||||..+. ...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~-------~~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD-----KVATMQVWDTAGQERF-------QSL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSS-----CCEEEEEECCC---------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCC-----cEEEEEEEECCCChHh-------hhh
Confidence 3468999999999999999999987644333333333333333433210 0136899999996432 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC--CCCCCCEEEEEeCCCCcCh-----HHHHHHHHHHHHhcCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA-----RDRLQSLTEEILKIGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kp~ivV~NK~Dl~~~-----~e~~~~l~~~l~~~g~ 423 (480)
+..++..+|++++|+|+++..+++....+..++..+.. .....|+++|+||+|+... .+....+.+......+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 44567789999999999987777777777777765432 1246899999999999543 2223333332334567
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|+++++++|....
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998655
No 21
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=5.6e-19 Score=159.77 Aligned_cols=155 Identities=22% Similarity=0.376 Sum_probs=105.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--cCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~~gl~~~ 350 (480)
.+|+|+|.+|||||||+|+|++....+..+|++|.+...+.+..+. ..+.+|||||+.+.... .+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--------EEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--------cEEEEEECCCcccCCCcchhHHHHHH
Confidence 5799999999999999999998877677888888887777665432 26899999998653211 1122233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 427 (480)
+++. ..+|++++|+|+++. +....+..++.. .+.|+++|+||+|+..... ..+.+.+.+ ...+.++|
T Consensus 76 ~~~~-~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 145 (165)
T 2wji_A 76 YIIN-EKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 145 (165)
T ss_dssp HHHH-HCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-CCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEE
Confidence 3221 379999999999853 333445555554 2589999999999864311 123333333 24677899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|++++++++....
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999987654
No 22
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=4.8e-19 Score=168.94 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=108.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc-c-ch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-L-GR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g-l-~~ 349 (480)
..+|+|+|.+|||||||+|+|++......+++++|.+.....+.... ..+.+|||||+.+....... + ..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--------NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--------EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--------CeEEEEECCCCcCcccchhhhHHHH
Confidence 46899999999999999999998876667788988877766554332 26899999999654332221 1 11
Q ss_pred hhhhhhccCCEEEEecccCCCCChh--hHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHh---
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILK--- 420 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~--- 420 (480)
.+......+|++|+|+|+++..+++ ....+..++... ....|+++|+||+|+....+ ..+.+.+....
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 2223356789999999999876543 223344555432 23689999999999975422 12223333333
Q ss_pred -cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 -IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 -~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|++++.|+++++++|....
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHH
Confidence 3466899999999999999998766
No 23
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=9.6e-19 Score=158.09 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=110.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+|+|++........+.++.+.....+..+.. ...+.+|||||..+ +...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~ 72 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH------FVTMQIWDTAGQER-------FRSL 72 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE------EEEEEEEECCCCGG-------GHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE------EEEEEEEeCCCchh-------hhhh
Confidence 3468999999999999999999987654333333333332333322210 12689999999743 2333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC--CCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCcee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDK 425 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~ 425 (480)
+..++..+|++++|+|+++..+++....|..++..+... ....|+++|+||+|+.... +....+........+.+
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEE
Confidence 456678899999999999877777777777777654321 2468999999999997432 22333322223356779
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|++++++++....
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 24
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=4.9e-19 Score=186.32 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=105.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc--ccCccch
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 349 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~--~~~gl~~ 349 (480)
++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+...+ ..+.+|||||+..... ..+.+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~ 73 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--------KTFKLVDTCGVFDNPQDIISQKMKE 73 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--------EEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--------eEEEEEECCCccccccchHHHHHHH
Confidence 68999999999999999999988765 48999999998888776543 3789999999875321 1223445
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~ 426 (480)
.+..+++.||++|+|+|++.+.+..+. .+.+.|+. .++|+++|+||+|+.... .......+..++ +.++
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~-~i~~~l~~-----~~~p~ilv~NK~D~~~~~--~~~~~~~~~~lg~~~~~~i 145 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRK-----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPV 145 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHH-HHHHHHHH-----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEEC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEeCCCCcccc--HHHHHHHHHhcCCCCEEEE
Confidence 566788999999999999876655442 34444554 258999999999986431 112212233444 4578
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.++.|+.++++++...+
T Consensus 146 SA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhc
Confidence 9999999999999998766
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=1.3e-18 Score=155.15 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=107.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.... ..+..|+.......+..+.. ...+.+|||||..+. ...+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQ------QCMLEILDTAGTEQF-------TAMRD 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSC------EEEEEEEEECSSCSS-------TTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCE------EEEEEEEECCChHHH-------HHHHH
Confidence 58999999999999999999976432 23333333222222222210 126899999997542 22334
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|++++.+++....+..++..+.. ..+.|+++|+||+|+.... +....+.+.+....+.++|+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 556789999999999987777777777777765421 2468999999999997532 22333333222345678999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++++++....
T Consensus 149 ~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997654
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=164.46 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=108.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+|+|++........+.++.+.....+..+.. ...+.+|||||..+ +...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~~ 91 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSI 91 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe------EEEEEEEeCCCcHH-------HHHH
Confidence 4468999999999999999999987654333333333333333332210 12689999999743 2334
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
+..++..+|++|+|+|+++..+++....|..++..+.. .+.|+++|+||+|+.... +..+.+.+.+....+.++
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 55667889999999999988777777778778876643 368999999999997532 222222222223346689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|+++++++|....
T Consensus 170 SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997654
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.77 E-value=2.1e-18 Score=154.28 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=110.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
..+|+++|.+|||||||+|+|++..... .+..+++.......+... ...+.+|||||+.+. ..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~~-------~~ 70 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE--------LHKFLIWDTAGLERF-------RA 70 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------EEEEEEEEECCSGGG-------GG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe--------EEEEEEEcCCCchhh-------hc
Confidence 4689999999999999999999876422 334444443332222211 136899999998432 23
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHhc--Cceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~ 426 (480)
.+..++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+....+. .+......... .+.++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 345567889999999999987777777778888877642 46889999999999753221 12222223333 45688
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|++++++++....
T Consensus 149 Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 149 SAKNAININELFIEISRRI 167 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred eCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998665
No 28
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=6.1e-19 Score=157.77 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=97.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+|+|+|.+|||||||+|+|++..... .+.+++|..... .+... ...+.+|||||..+. ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~i~D~~g~~~~-------~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGE--------EASLMVYDIWEQDGG-------RWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTE--------EEEEEEEECC---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCE--------EEEEEEEECCCCccc-------hhh
Confidence 4689999999999999999999776533 556666654322 22211 126899999998543 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~s 427 (480)
...++..+|++++|+|++++.+++....++.++..+.. ..+.|+++|+||+|+....+. .+........ ..+.++|
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 33456789999999999988777777778777776432 246899999999999754221 1122222222 3456899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|+++++++|....
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999997654
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.4e-18 Score=155.86 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccC-CCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+|+|.+|||||||+++|++....... .+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV------KVKLQMWDTAGQERF-------RS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE------EEEEEEEECCCC------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE------EEEEEEEeCCCcHHH-------HH
Confidence 4468999999999999999999987664322 233333322222222110 126899999997442 23
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~ 425 (480)
.+..++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+.... +....+.+.. ...+.+
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFME 152 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEE
Confidence 345567889999999999987777777778788876543 468999999999997532 2223332222 346778
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++++++.|++++++++....
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998665
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.5e-18 Score=159.05 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=114.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC--CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~--~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
....+|+|+|.+|||||||+|+|++... ...+..++|.......+... ...+.+|||||..+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~------- 85 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE--------LHKFLIWDTAGQERF------- 85 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS--------EEEEEEEEECCSGGG-------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE--------EEEEEEEcCCCchhh-------
Confidence 3457899999999999999999998764 23444555543333222211 136899999997432
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC--ce
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CD 424 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g--~~ 424 (480)
...+..++..+|++++|+|+++..+++....|..++..+.. ...|+++|+||+|+....+ ..+++.+.....+ +.
T Consensus 86 ~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 33345667889999999999988777888888888877642 3689999999999974221 1233444444444 55
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++++.|+++++++|....
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 164 ETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EEeCCCCcCHHHHHHHHHHHH
Confidence 889999999999999998765
No 31
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=1.2e-18 Score=161.97 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=112.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~ 73 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR------LVTMQIWDTAGQERF-------QSL 73 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC------EEEEEEEEECSSGGG-------SCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHh
Confidence 4468999999999999999999987654444444444444444433211 126899999997543 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC--CCCCCEEEEEeCCCCcChHHHHHHHHHHH---HhcCcee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDK 425 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l---~~~g~~~ 425 (480)
+..++..+|++|+|+|++++.+++....|..++..+... ....|+++|+||+|+.......+...+.. ....+.+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence 345567899999999999877777777777777654311 13589999999999974322222222222 2345678
Q ss_pred eecccccCHHHHHHHHHHhcC
Q 011645 426 VTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+|++++.|+++++++|.....
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987663
No 32
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.77 E-value=1.9e-18 Score=155.93 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=110.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+|+|.+|||||||+++|++..... .++.|+ .+.....+.... ....+.+|||||..+ +..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~ 79 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQER-------FRA 79 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGG-------TCH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECC------eEEEEEEEECCCChH-------hhh
Confidence 45789999999999999999999876432 222221 111111221111 012689999999743 233
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC--ceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g--~~~~ 426 (480)
.+..++..+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+....+ ..+++.+.....+ +.++
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEA 157 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 456677889999999999988777777778887876542 3689999999999975321 1233334444444 5688
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|++++++++....
T Consensus 158 Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 158 SAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.77 E-value=2.1e-18 Score=156.39 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=109.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+ +...+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND------ATVKFEIWDTAGQER-------YHSLA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT------EEEEEEEEECCCSGG-------GGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC------EEEEEEEEeCCCChh-------hhhhh
Confidence 36899999999999999999998765432222222111111221111 012689999999743 23334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa 428 (480)
..++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+....+ ..+++.+..... .+.++++
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 5667889999999999987777777777777776542 3689999999999975322 123333333344 4568899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 157 ~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 157 KTATNVKEIFYEIARRL 173 (181)
T ss_dssp SSCTTHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998766
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=8.9e-19 Score=158.45 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=107.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.+.....++.+|.+.....+..+. ..+.+|||||+.+. ...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~-------~~~ 71 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--------KKITFLDTPGHEAF-------TTM 71 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--------EEEEESCCCSSSSS-------SCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--------ceEEEEECCCCHHH-------HHH
Confidence 456899999999999999999998876666666666555444443332 36899999997543 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh----------
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------- 420 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~---------- 420 (480)
+.+++..+|++++|+|+++....+.++.+ ..+.. .+.|+++|+||+|+.... .+.+.+.+..
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l-~~~~~-----~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAI-NHAKA-----ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHH-HHHGG-----GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTS
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHh-----CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCC
Confidence 34567889999999999886555555433 22322 368999999999998642 1122222221
Q ss_pred -cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 -IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 -~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|++++.|+++++++|....
T Consensus 144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 144 DTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCCCHHHHHHHHHHhh
Confidence 2456899999999999999997655
No 35
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=154.88 Aligned_cols=160 Identities=15% Similarity=0.115 Sum_probs=101.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+|+|+|.+|||||||+++|++..... .+.+++|.......+... ...+.+|||||..... ....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~g~~~~~-----~~~~ 70 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGE--------DTTLVVVDTWEAEKLD-----KSWS 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTE--------EEEEEEECCC------------CHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCE--------EEEEEEEecCCCCccc-----hhhh
Confidence 4689999999999999999999876533 333343332222222211 1268899999985420 1111
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHH--hcCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~--~~g~~~~s 427 (480)
...++..+|++++|+|++++.+++....+..++..+.. ....|+++|+||+|+....+. .++...... ...+.++|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETS 149 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence 22345679999999999987777777777777776431 236899999999999753211 112222222 24567899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|+++++++|....
T Consensus 150 a~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998665
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.77 E-value=2.4e-18 Score=153.60 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=108.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
..+|+++|.+|||||||+++|++..... .+..+++.......+... ...+.+|||||..+ +..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~G~~~-------~~~ 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------TVKFEIWDTAGQER-------YHS 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------EEEEEEEEECCSGG-------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE--------EEEEEEEeCCCcHH-------hhh
Confidence 3689999999999999999999765432 222223322222222111 12689999999754 233
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC--ceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g--~~~~ 426 (480)
.+..++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+....+ ..++..+.....+ +.++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 345667889999999999987777777777777776532 3689999999999865321 1223333333344 5678
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|+++++++|....
T Consensus 149 Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998665
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.77 E-value=1.2e-18 Score=157.27 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=111.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.+|||||||+|+|++........+.++.+.....+..+.. ...+.+|||||..+. ...+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQERF-------RSLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------GGGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe------EEEEEEEECCCcHHH-------HHHHH
Confidence 68999999999999999999977655444455554444444332210 126899999997442 23345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 429 (480)
.++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+....+. .++....... ..+.+++++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 667889999999999987667777777777765432 36899999999999753211 1222222333 446689999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
++.|+++++++|....
T Consensus 160 ~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998655
No 38
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.77 E-value=2.1e-18 Score=160.92 Aligned_cols=162 Identities=16% Similarity=0.099 Sum_probs=114.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~ 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK------TVKLQIWDTAGQERF-------RT 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE------EEEEEEECCTTTTTT-------TC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEeCCChHHH-------HH
Confidence 34578999999999999999999987655444444444333333332210 126899999997542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~ 426 (480)
.+..++..+|++|+|+|++++.+++....|+.++..+.. ...|+++|+||+|+....+ ..+...+.... ..+.++
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 345667889999999999988777787778888876642 3689999999999975321 11222222233 456789
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++++.|+++++++|.....
T Consensus 151 Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 39
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.77 E-value=2.1e-18 Score=158.69 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=110.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+|+|++........+..+.+.....+.... ....+.+|||||..+. ..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~ 86 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD------KRIKLQIWDTAGQERY-------RT 86 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT------EEEEEEEEECCSCCSS-------CC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC------eEEEEEEEeCCCcHHH-------hh
Confidence 4567999999999999999999998764332222211111111221111 0126899999997432 23
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~ 426 (480)
.+..++..+|++++|+|+++..+++....|..++..+. ....|+++|+||+|+....+. .+...+.... ..+.++
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 34566788999999999998777777777888887764 236899999999999753211 1222233333 346689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++.|+++++++|....
T Consensus 165 Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVI 183 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998655
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=3.2e-19 Score=161.38 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=108.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++.+......|.++.+.....+..... ....+.+|||||..+. ...+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~~Dt~G~~~~-------~~~~ 73 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-----LNVTLQIWDIGGQTIG-------GKML 73 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT-----EEEEEEEEECTTCCTT-------CTTH
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCCccc-------cchh
Confidence 368999999999999999999976543211121112222222322210 0126899999997442 2334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
..+++.+|++++|+|++++.+++....|..++..+.......| +++|+||+|+.... +....+.+.. ...+.++
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-GFSSHFV 152 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEE
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-CCcEEEE
Confidence 5567889999999999988777777778777776432112456 79999999997532 2222332221 2456689
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
|++++.|+++++++|.....
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 41
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=2.1e-18 Score=159.00 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=105.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.......|..| .......+... ...+.+|||||+.+. ...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t-~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~ 79 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT-VGYNVETFEKG--------RVAFTVFDMGGAKKF-------RGL 79 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC-SSEEEEEEEET--------TEEEEEEEECCSGGG-------GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc-cceeEEEEEeC--------CEEEEEEECCCCHhH-------HHH
Confidence 34689999999999999999999877544222222 22222223222 137899999998542 333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhC------CCCCCCCEEEEEeCCCCcCh---HHHHHHHHHH-H-H
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN------PDYLERPFIVVLNKIDLPEA---RDRLQSLTEE-I-L 419 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~------~~l~~kp~ivV~NK~Dl~~~---~e~~~~l~~~-l-~ 419 (480)
+..+++.+|++|+|+|+++..+++....++.++.... +.....|+++|+||+|+... .+..+.+... + .
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 4456788999999999998877777766666654321 11126899999999999865 2222222111 1 1
Q ss_pred --hcCceeeecccccCHHHHHHHHHHhc
Q 011645 420 --KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 --~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+.++|++++.|+++++++|....
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 12456899999999999999998765
No 42
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=1.4e-18 Score=158.57 Aligned_cols=161 Identities=15% Similarity=0.047 Sum_probs=115.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+ +..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~ 74 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK------YVKLQIWDTAGQER-------FRS 74 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCCcHH-------HHH
Confidence 44578999999999999999999987765555555554444333332210 12689999999743 233
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~ 426 (480)
.+..++..+|++++|+|++++.+++....+..++..+.. .+.|+++|+||+|+....+ ..++..+..... .+.++
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLET 152 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEe
Confidence 456677889999999999987777777778777776543 4689999999999964321 122333333344 45688
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|++++++++....
T Consensus 153 Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKI 171 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998665
No 43
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=162.50 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=110.3
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
......+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+ +
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~ 91 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK------RVKLQIWDTAGQER-------F 91 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE------EEEEEEECCTTCGG-------G
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCcHh-------H
Confidence 3456689999999999999999999977643222221112222222222210 12689999999743 2
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC---c
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG---C 423 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g---~ 423 (480)
...+..+++.+|++++|+|+++..+++....|+.++..+.. ...|+++|+||+|+....+ ..+++.+.....+ +
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEE
Confidence 33345667889999999999987777777788888876642 4689999999999975311 1233334444444 4
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++++++.|+++++++|....
T Consensus 170 ~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 170 IETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765
No 44
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=1.6e-19 Score=177.17 Aligned_cols=154 Identities=22% Similarity=0.296 Sum_probs=112.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc------ccCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGKG 346 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~------~~~g 346 (480)
.+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.+|||||+.+... ..+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--------~~~~lvDtpG~~~~~~~~~~~~~~e~ 73 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--------HLIEITDLPGVYSLVANAEGISQDEQ 73 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--------EEEEEEECCCCSSCC------CHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--------eEEEEEeCCCcccccccccCCCHHHH
Confidence 5899999999999999999999987789999999988888876542 3789999999965431 1122
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCc
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGC 423 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~ 423 (480)
+.+.++.. +.+|++++|+|+++. +....+...+.. .+.|+++|+||+|+.... ...+.+.+.+ ...+
T Consensus 74 i~~~~~~~-~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~v 143 (256)
T 3iby_A 74 IAAQSVID-LEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSV 143 (256)
T ss_dssp HHHHHHHH-SCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCE
T ss_pred HHHHHHhh-CCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCE
Confidence 33333221 789999999999873 333334444443 368999999999986532 1233343333 3567
Q ss_pred eeeecccccCHHHHHHHHHHh
Q 011645 424 DKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.++++.++.|++++++++...
T Consensus 144 i~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 144 IPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECBGGGTBSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999765
No 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=158.60 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=109.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.......+. +|.......+..+. ..+.+|||||..+ +...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~ 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSS--------LSFTVFDMSGQGR-------YRNL 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSS--------CEEEEEEECCSTT-------TGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECC--------EEEEEEECCCCHH-------HHHH
Confidence 347899999999999999999998763333332 33333334444332 3799999999743 2334
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCC--CCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEARDRLQSLTEEIL-------KI 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~ 421 (480)
+..++..+|++++|+|+++..+++....++.++.... .. .+.|+++|+||+|+..... .+++.+.+. ..
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCce
Confidence 4567788999999999998766666666666665432 12 4689999999999976421 233333332 12
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++|++++.|+++++++|....
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEEccCCCCcCHHHHHHHHHHHH
Confidence 356899999999999999998665
No 46
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.77 E-value=1.7e-18 Score=155.35 Aligned_cols=161 Identities=19% Similarity=0.107 Sum_probs=103.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|++........+.+|.+.....+..+.. ...+.+|||||..+... .+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~D~~g~~~~~~---~~---~ 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE------EVTLIVYDIWEQGDAGG---WL---Q 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTE------EEEEEEECCCCC--------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCe------EEEEEEEECCCccccch---hh---h
Confidence 468999999999999999999876654444444444444333332211 12688999999854311 01 1
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa 428 (480)
...+..+|++++|+|++++.+++....++.++..+.+ ..+.|+++|+||+|+....+ ..+...+..... .+.++|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 2235679999999999998778888778777776542 23689999999999974321 122222333333 4568999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++++++....
T Consensus 149 ~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999997654
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=1.2e-18 Score=155.56 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=107.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+........|.++.+.....+..+. ....+.+|||||..+. ...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~-------~~~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE------HTVKFEIWDTAGQERF-------ASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------GGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCChhh-------hhhhh
Confidence 5899999999999999999997764332223222222222222111 0126899999997432 33345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh---HHH-HHHHHHHHH--hcCceee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDR-LQSLTEEIL--KIGCDKV 426 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~---~e~-~~~l~~~l~--~~g~~~~ 426 (480)
.++..+|++++|+|++++.+++....+..++..+.. ...|+++|+||+|+... .+. .+...+... ...+.++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET 148 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 667889999999999987777777777777776542 46899999999998643 111 112222222 2346689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|+++++++|....
T Consensus 149 Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 149 SAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHTTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997654
No 48
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=5.7e-19 Score=181.73 Aligned_cols=111 Identities=39% Similarity=0.669 Sum_probs=86.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC--------Cccc-cCCceEEecCCcccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAEK-YSSEATLADLPGLIEGAHL 343 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~~~-~~~~~~l~DTPGlie~a~~ 343 (480)
.+|+|||.||||||||+|+|++....+++|||||++|+.|.+...... .+.. ....+.+|||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 579999999999999999999988778999999999999988654210 0000 0136899999999999888
Q ss_pred cCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHH
Q 011645 344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 383 (480)
Q Consensus 344 ~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL 383 (480)
+++++..|+.++++||++++|+|+++ .++.++++.+..||
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 88999999999999999999999986 25677777766666
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.76 E-value=1.1e-18 Score=155.89 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=107.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+|+|++........+.++.+.....+.... ....+.+|||||..+. ...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND------EDVRLMLWDTAGQEEF-------DAIT 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT------EEEEEEEECCTTGGGT-------TCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC------EEEEEEEEcCCCcHhH-------HHHH
Confidence 46899999999999999999998654332222222222222222211 0126899999997542 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa 428 (480)
..++..+|++++|+|++++.+++....+..++..+. ...|+++|+||+|+....+ ..++..+.... ..+.++|+
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 456778999999999998777777777777776643 3689999999999875321 12222333333 34668899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 149 ~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp TTTBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 50
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=2.2e-18 Score=159.05 Aligned_cols=161 Identities=16% Similarity=0.057 Sum_probs=109.8
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++.+......+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 85 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK------QIKLQIWDTAGQESF-------RS 85 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE------EEEEEEECCTTGGGT-------SC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCchhh-------hh
Confidence 34578999999999999999999987654433333333322222322210 126899999997542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~ 426 (480)
.+..++..+|++++|+|+++..+++....++.++..+.. ...|+++|+||+|+....+. .++..+.... ..+.++
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 163 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 163 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEE
Confidence 345567789999999999987777777778888876542 36899999999999753211 1222222233 346689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++.|+++++++|....
T Consensus 164 Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998665
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.76 E-value=1.6e-18 Score=154.25 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=108.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++... ...++.|+.......+..+.. ...+.+|||||..+. ...+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQEDY-------AAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC---C-------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCE------EEEEEEEECCCcchh-------HHHHH
Confidence 5899999999999999999997653 234444443333322222210 126899999997432 23345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa~ 429 (480)
.++..+|++++|+|+++..+++....+..++..+.. ..+.|+++|+||+|+....+ ..++..+.... ..+.+++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence 567789999999999987777777777777766542 23689999999999975321 12233333333 346689999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
++.|++++++++....
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997654
No 52
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.76 E-value=2.2e-18 Score=156.40 Aligned_cols=157 Identities=16% Similarity=0.086 Sum_probs=102.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.+|||||..+. ...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNG------ATVNLGLWDTAGQEDY-------NRLR 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------------CEEECCCC-CTT-------TTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECC------EEEEEEEEECCCChhh-------hhhH
Confidence 46899999999999999999997653 23444444332222222111 1125779999997442 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-----------HHHHHHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-----------LQSLTEEIL 419 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-----------~~~l~~~l~ 419 (480)
..++..+|++++|+|++++.+++... .|..++..+. ...|+++|+||+|+....+. .++..+...
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 45677899999999999877777765 5777787764 36899999999999764331 122222222
Q ss_pred h---cCceeeecccccCHHHHHHHHHHhc
Q 011645 420 K---IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~---~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. ..+.++|++++.|++++++++....
T Consensus 151 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 151 LIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 2566899999999999999997654
No 53
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.76 E-value=1.4e-18 Score=155.62 Aligned_cols=160 Identities=18% Similarity=0.069 Sum_probs=106.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 71 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK------RVNLAIWDTAGQERF-------HAL 71 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC------EEEEEEEECCCC-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE------EEEEEEEECCCcHhh-------hhh
Confidence 3468999999999999999999977643333333333322223322211 126889999997542 122
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~s 427 (480)
+..++..+|++++|+|+++..+++....+..++..+.. ...|+++|+||+|+....+ ..++..+..... .+.++|
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 33456789999999999987777777777777765431 3589999999999975321 122333333333 456889
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|+++++++|....
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997654
No 54
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.8e-18 Score=161.33 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=113.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||... +..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE------KVKLQIWDTAGQER-------FRS 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHH-------HHH
Confidence 45679999999999999999999987654443443333333333332210 12689999999743 233
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~ 425 (480)
.+..+++.+|++++|+|+++..+++....|..++..+.. ...|+++|+||+|+.... +..+.+... ....+.+
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~ 167 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEA-QDMYYLE 167 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCCEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCEEEE
Confidence 345667889999999999988777777788888877642 368999999999997432 222222221 2345678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|++++++++....
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 168 TSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998665
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.76 E-value=7.3e-19 Score=160.27 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=88.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........|.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~ 72 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK------RIKLQIWDTAGQERF-------RT 72 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE------EEEEEEEEC---------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEcCCCChhh-------hh
Confidence 34578999999999999999999976544333343343333333322210 126899999997542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----HHHHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----~e~~~~l~~~l~~~g~~~ 425 (480)
.+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+... .+....+.+.+ ...+.+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~ 149 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKFME 149 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-TCEEEE
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHHHHHHHHHc-CCeEEE
Confidence 234556789999999999987777777777777776532 36899999999999753 22233332222 234668
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|+++++++|....
T Consensus 150 ~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 150 TSAKANINVENAFFTLARDI 169 (183)
T ss_dssp CCC---CCHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998665
No 56
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=3.9e-18 Score=152.97 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=106.6
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
++...+|+++|.+|||||||+++|.+.... ...| |.......+.+. ...+.+|||||..+. .
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~-------~ 65 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYK--------NLKFQVWDLGGLTSI-------R 65 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEET--------TEEEEEEEECCCGGG-------G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEEC--------CEEEEEEECCCChhh-------h
Confidence 345578999999999999999999876532 1111 222222223222 137899999998542 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----h--c
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--I 421 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~--~ 421 (480)
..+..++..+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+....+ .+++.+.+. . .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKW 143 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCce
Confidence 334566788999999999999887777666555554321 124689999999999976422 122332221 1 1
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++|++++.|+++++++|....
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcCCCCcCHHHHHHHHHHHH
Confidence 356899999999999999998665
No 57
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.7e-18 Score=155.76 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=109.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.+|||||..+. ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~D~~G~~~~-------~~~ 82 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGK------QYLLGLYDTAGQEDY-------DRL 82 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSC------EEEEEEECCCCSSSS-------TTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCE------EEEEEEEECCCCcch-------hHH
Confidence 346899999999999999999997643 234444543332223332210 126889999998543 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----------------HHHH
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQS 413 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----------------~~~~ 413 (480)
+..++..+|++++|+|++++.+++... .|..++..+. .+.|+++|+||+|+....+ ....
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 83 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 345677899999999999877676665 5777777754 3689999999999976421 1222
Q ss_pred HHHHHHhcCceeeecccccCHHHHHHHHHHhc
Q 011645 414 LTEEILKIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 414 l~~~l~~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.+.+....+.++|++++.|++++++++....
T Consensus 160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 22222222567899999999999999987654
No 58
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=7.9e-18 Score=154.14 Aligned_cols=158 Identities=23% Similarity=0.263 Sum_probs=110.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------ 343 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~------ 343 (480)
..++|+|+|.+|||||||+|+|++.... ..+.+++|......... .++.+|||||+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-----------SKYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-----------TTEEEEECCCBSSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-----------CcEEEEECCCCccccCChhhHHH
Confidence 3468999999999999999999988743 36677777665544331 36899999997542111
Q ss_pred cCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHh
Q 011645 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 420 (480)
Q Consensus 344 ~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~ 420 (480)
-..+...+++....+|++++|+|++........ .+...+... +.|+++|+||+|+....+ ..+.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 111223344555567999999999876554443 344455542 589999999999975432 23344444544
Q ss_pred ---cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 ---IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 ---~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|++++.|+++++++|....
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 2567899999999999999998665
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=7.5e-18 Score=153.74 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=111.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeecc-ceeccCCCCCCc---cccCCceEEecCCcccccccccCc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGA---EKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~---~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
...+|+|+|.+|||||||+++|++........+..+.+.. ...+........ ......+.+|||||+.+
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 4568999999999999999999976543322222222111 112222110000 00012689999999843
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcC
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIG 422 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g 422 (480)
+...+..++..+|++++|+|++++.+++....+..++..+.. ....|+++|+||+|+.... +....+.+.+ ...
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~ 160 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKY-GIP 160 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCC
Confidence 334456778899999999999988777777777777776542 1368999999999997531 2223332222 345
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.+++++++.|+++++++|....
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 77899999999999999998765
No 60
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=6.4e-19 Score=185.26 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=98.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc-ccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~~~ 350 (480)
++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+.... ..+.+|||||+..... ..+.+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~ 75 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQQ 75 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--------SCCEEEC---------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--------ceEEEEECCCCCCcchhHHHHHHHH
Confidence 68999999999999999999988765 48899999998888776543 3799999999963211 11223444
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~s 427 (480)
+..+++.||++|+|+|++.+.+..+. .+.+.|+. .++|+++|+||+|+....... . .+..++ +.++|
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~---~-~~~~lg~~~~~~iS 145 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANI---Y-DFYSLGFGEPYPIS 145 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----CC---C-SSGGGSSCCCEECB
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhhH---H-HHHHcCCCCeEEEe
Confidence 56678899999999999987665543 34444442 468999999999987542211 1 122333 45789
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++.|+.++++++....
T Consensus 146 A~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp TTTTBTHHHHHHHHHHTG
T ss_pred CcCCCChHHHHHHHHHhc
Confidence 999999999999998766
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=159.66 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=113.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..++|+|+|.+|||||||+++|++... ...++.|+.+.....+..+.. ...+.+|||||..+. ...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~ 78 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQEDY-------AAI 78 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTCC-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCE------EEEEEEEcCCChhhh-------HHH
Confidence 346899999999999999999997763 345555554443333332210 126899999997442 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~s 427 (480)
+..++..+|++++|+|+++..+++....+..++..+.. ....|+++|+||+|+....+ ..+++.+.... ..+.++|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 44567789999999999987777777777777776542 23689999999999975321 12233333333 3466899
Q ss_pred cccccCHHHHHHHHHHhcC
Q 011645 428 SETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~ 446 (480)
+.++.|+++++++|.....
T Consensus 158 a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987663
No 62
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.76 E-value=2.4e-18 Score=160.74 Aligned_cols=152 Identities=22% Similarity=0.232 Sum_probs=102.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+.. .+. .|..+..+.+..+. ..+.+|||||+.+. ...+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~-------~~~~~ 87 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAG--------MTFTTFDLGGHIQA-------RRVWK 87 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC-----------CCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECC--------EEEEEEECCCcHhh-------HHHHH
Confidence 48999999999999999999976532 222 24444444444332 27899999997542 22344
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh------------
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 420 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~------------ 420 (480)
.+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+... ...+++.+.+..
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccccc
Confidence 56778999999999998877777766666665421 1246899999999999752 112333333321
Q ss_pred -------cCceeeecccccCHHHHHHHHHHh
Q 011645 421 -------IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 421 -------~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..+.++|+++++|+++++++|...
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 235689999999999999998754
No 63
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=157.55 Aligned_cols=160 Identities=18% Similarity=0.055 Sum_probs=109.6
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCC--ceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
....++|+|+|.+|||||||+|+|++........+ +++.......+... ...+.+|||||+.+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~------ 87 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA--------AVKAQIWDTAGLERY------ 87 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTE--------EEEEEEEEESCCCTT------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------EEEEEEEeCCCchhh------
Confidence 35567999999999999999999998765432222 12221111111111 126899999998442
Q ss_pred cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cc
Q 011645 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GC 423 (480)
Q Consensus 347 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~ 423 (480)
...+..++..+|++|+|+|++++..++....++.++..+.. ...|+++|+||+|+....+ ..+......... .+
T Consensus 88 -~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
T 2oil_A 88 -RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLF 164 (193)
T ss_dssp -CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEE
T ss_pred -hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEE
Confidence 23345667889999999999987767777777777765432 4689999999999975321 122233333333 45
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++++.++.|+++++++|....
T Consensus 165 ~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 165 LETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987655
No 64
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=4.5e-18 Score=158.03 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=110.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||+.+ +...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND------KRIKLQIWDTAGLER-------YRTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGG-------GHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC------eEEEEEEEECCCchh-------hcch
Confidence 457899999999999999999998764332222211111111221111 012689999999843 2334
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
+..++..+|++|+|+|++++.+++....|..++..+.. ...|+++|+||+|+.... +....+.+.+ .+.+.++
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEA 150 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-TCEEEEC
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHC-CCeEEEE
Confidence 55677889999999999987777777778888876642 368999999999997532 2223333222 2356689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|++++.|+++++++|....
T Consensus 151 Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 151 SAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp BTTTTBSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999988665
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.4e-18 Score=156.30 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=106.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++.+.. . + ..|.......+..+. ..+.+|||||+.+. ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~ 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H-T-SPTIGSNVEEIVINN--------TRFLMWDIGGQESL-------RSS 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E-E-ECCSCSSCEEEEETT--------EEEEEEECCC-----------CGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c-C-cCCCccceEEEEECC--------EEEEEEECCCCHhH-------HHH
Confidence 3468999999999999999999976532 1 1 112222222332221 37899999998542 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----hc--Cc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~ 423 (480)
+..+++.+|++++|+|++++.+++....++.++..+. ...+.|+++|+||+|+..... .+++.+.+. .. .+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEE
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcEE
Confidence 4566788999999999999888888777777666431 124689999999999976321 222333322 12 35
Q ss_pred eeeecccccCHHHHHHHHHHhcC
Q 011645 424 DKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.++|++++.|+++++++|.+...
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 68999999999999999987663
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.3e-18 Score=154.10 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=104.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+|+|++........+ |.-......+..+. ....+.+|||||..+. ...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~-------~~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCDK------SICTLQITDTTGSHQF-------PAMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEETT------EEEEEEEEECCSCSSC-------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEECC------EEEEEEEEECCCchhh-------HHHHH
Confidence 5899999999999999999998654322111 11011011111110 0126899999997532 23345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|++++.+++....++.++..+.......|+++|+||+|+....+ ....+... ....+.++|+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 148 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART-WKCAFMETSA 148 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hCCeEEEecC
Confidence 567789999999999987767777777777776543345789999999999875322 22222221 1234678999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 149 ~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 149 KLNHNVKELFQELLNLE 165 (172)
T ss_dssp TTTBSHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998655
No 67
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.75 E-value=7.7e-19 Score=181.28 Aligned_cols=163 Identities=33% Similarity=0.561 Sum_probs=117.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC--------Cccc-----cCCceEEecCCcccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAEK-----YSSEATLADLPGLIE 339 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~~~-----~~~~~~l~DTPGlie 339 (480)
.+|+|||.||||||||+|+|++..+.+++|||||++|+.+.+...... .... ....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999999987778999999999999987543100 0000 113689999999999
Q ss_pred cccccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhh-----------------------
Q 011645 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY----------------------- 386 (480)
Q Consensus 340 ~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~----------------------- 386 (480)
+++.+++++..|+.+++.||++++|+|+++ .++.+++..+..||..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 998889999999999999999999999986 25666666655555210
Q ss_pred ----------------CC------------------CCCCCCEEEEEeCCCC--cCh--HHHHHHHHHHHHhcC--ceee
Q 011645 387 ----------------NP------------------DYLERPFIVVLNKIDL--PEA--RDRLQSLTEEILKIG--CDKV 426 (480)
Q Consensus 387 ----------------~~------------------~l~~kp~ivV~NK~Dl--~~~--~e~~~~l~~~l~~~g--~~~~ 426 (480)
.+ .+..+|+++|+||.|. .+. ....+.+.+.....+ +.++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 1335899999999974 332 355666666655444 4457
Q ss_pred ecccccCHH
Q 011645 427 TSETELSSE 435 (480)
Q Consensus 427 sa~t~~Gi~ 435 (480)
++++++.+.
T Consensus 242 SAk~E~el~ 250 (368)
T 2dby_A 242 SARLEAELA 250 (368)
T ss_dssp CHHHHHHHH
T ss_pred echhHHHHH
Confidence 776654443
No 68
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=1.3e-18 Score=172.41 Aligned_cols=155 Identities=20% Similarity=0.353 Sum_probs=113.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc--ccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~--~~~gl~~ 349 (480)
..+|+|+|.||||||||+|+|++....++++|++|.+...+.+.. . ..+.+|||||+.+... ..+.+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~--------~~l~l~DtpG~~~~~~~~~~e~v~~ 73 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N--------KDLEIQDLPGIYSMSPYSPEAKVAR 73 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C--------TTEEEEECCCCSCSSCSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C--------CeEEEEECCCcCccCCCChHHHHHH
Confidence 358999999999999999999998878899999999888887754 2 3799999999865321 1122333
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~~ 426 (480)
.++.. +.+|++++|+|+++. +....+..++.. .+.|+++|+||+|+.... ...+.+.+.+ ...+.++
T Consensus 74 ~~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~ 143 (272)
T 3b1v_A 74 DYLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVAT 143 (272)
T ss_dssp HHHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEEC
T ss_pred HHHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEE
Confidence 44332 469999999999863 333345455554 368999999999986432 1223343333 3467789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.++.|++++++++....
T Consensus 144 SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 144 SALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp BTTTTBSHHHHHHHHHHSC
T ss_pred EccCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.75 E-value=3.3e-18 Score=155.37 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=111.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++... ...++.|+.......+..... ...+.+|||||..+ +...+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~ 83 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQED-------YAAIR 83 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTC-------CHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCE------EEEEEEEECCCCcc-------cHHHH
Confidence 36899999999999999999997653 344555554433333322210 12689999999743 23334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC--ceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g--~~~~sa 428 (480)
..++..+|++++|+|+++...++....+..++..+.. ....|+++|+||+|+....+ ..+++.+.....+ +.++++
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 5567789999999999987777777777777766542 23689999999999975321 1233444444444 568899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 163 ~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 70
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=3.4e-18 Score=152.54 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=104.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.... ...| |.......+.... ..+.+|||||+.+ +...+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~--------~~~~i~Dt~G~~~-------~~~~~~ 62 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLWR 62 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS--------CEEEEEECCCCGG-------GHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC--------EEEEEEEcCCChh-------hHHHHH
Confidence 37999999999999999999876532 1222 3333333333321 3789999999854 233345
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------cCcee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 425 (480)
.++..+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+.. ..+.+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEE
Confidence 56789999999999998776766665555554321 224689999999999976421 2223322211 12568
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|+++++++|....
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred cccCCCcCHHHHHHHHHHHH
Confidence 99999999999999998665
No 71
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=3.3e-18 Score=158.56 Aligned_cols=151 Identities=24% Similarity=0.259 Sum_probs=106.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++.+.. .+ .+|..+..+.+..+. ..+.+|||||+.+. ...+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~ 85 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN--------IKFTTFDLGGHIQA-------RRLWK 85 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT--------EEEEEEECCCSGGG-------TTSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC--------EEEEEEECCCCHHH-------HHHHH
Confidence 58999999999999999999976543 22 124444444444332 27899999998543 12234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh------------
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 420 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~------------ 420 (480)
.+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+..
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTCSSCCC---CCSS
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCC-CHHHHHHHhCCcccccccccccc
Confidence 55678999999999998877777776666665421 12468999999999997631 12334443322
Q ss_pred --cCceeeecccccCHHHHHHHHHH
Q 011645 421 --IGCDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 421 --~g~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
..+.++|++++.|+++++++|.+
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHh
Confidence 23568999999999999999864
No 72
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.75 E-value=4.7e-18 Score=157.03 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=109.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
+...+|+|+|.+|||||||+++|++... ...+..|+.......+..+.. ...+.+|||||..+. ..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 86 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE------EFILHLWDTAGQEEY-------DR 86 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------TT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCE------EEEEEEEECCCcHHH-------HH
Confidence 3457899999999999999999998764 233333433222222222110 125799999997442 23
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh------HHHHHHHHHHHHhcC
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIG 422 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~------~e~~~~l~~~l~~~g 422 (480)
.+..++..+|++++|+|++++.+++.. ..|..++..+. ...|+++|+||+|+... .+..+.+.+.+....
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 344567789999999999987777665 56777777654 36899999999998742 222333333332223
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++|++++.|++++++++....
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHH
Confidence 77899999999999999998765
No 73
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=3.1e-18 Score=155.76 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=109.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++... ...++.|+.......+..+.. ...+.+|||||+.+. ....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~ 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQ------EYHLQLVDTAGQDEY-------SIFP 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCCTT-------CCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCE------EEEEEEEeCCCchhh-------hHHH
Confidence 46899999999999999999996552 344444544333333322210 125789999998543 1223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa 428 (480)
..++..+|++++|+|+++..+++....+..++..+.. ..+.|+++|+||+|+....+ ..++..+..... .+.++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 150 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence 3456779999999999988777777777777765432 23689999999999864321 122233333333 4568899
Q ss_pred ccccCHHHHHHHHHHhcC
Q 011645 429 ETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~~ 446 (480)
+++.|++++++++.....
T Consensus 151 ~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAE 168 (181)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=2.4e-18 Score=161.92 Aligned_cols=164 Identities=13% Similarity=0.021 Sum_probs=108.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
...+|+|+|.+|||||||+|+|++.+... .....++............ ...+.+|||||+.+. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------~~~~~l~Dt~G~~~~-------~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGN-------VIKFNVWDTAGQEKK-------A 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSC-------EEEEEEEEECSGGGT-------S
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCc-------EEEEEEEecCCchhh-------c
Confidence 34689999999999999999999765432 1222222222111111000 025899999997543 1
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHH-HHHHHHhc--Ccee
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILKI--GCDK 425 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~-l~~~l~~~--g~~~ 425 (480)
.....++..+|++|+|+|+++..++++...|+.++..+.. .+.|+++|+||+|+....+.... ..+..... .+.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 2234456789999999999988777777777777776542 35899999999999764332222 22222333 3568
Q ss_pred eecccccCHHHHHHHHHHhcCcccc
Q 011645 426 VTSETELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
+|++++.|+++++++|.........
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999987754433
No 75
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.2e-18 Score=159.03 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=110.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCC--ceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
...++|+|+|.+|||||||+++|++........+ +++.......+... ...+.+|||||..+ +
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~ 85 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQER-------Y 85 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHH-------C
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHH-------H
Confidence 4668999999999999999999998764322111 11222211122211 12689999999743 2
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCc
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGC 423 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~ 423 (480)
...+..++..+|++++|+|+++..+++....|..++..+.. ...|+++|+||+|+.... +..+.+...+ ...+
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 162 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEKGQLLAEQL-GFDF 162 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeE
Confidence 33455667889999999999988778888888888887642 468999999999986532 2222222222 3456
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++++++.|+++++++|....
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998665
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=5.9e-18 Score=150.37 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=106.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++..... .+..|+.+.....+..+. ....+.+|||||..+ ......
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~-------~~~~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQ-------FASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTC-------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECC------EEEEEEEEECCCchh-------hHHHHH
Confidence 589999999999999999999765432 233333222222222221 012589999999743 223344
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeeec
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 428 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 428 (480)
.++..+|++++|+|+++..+++....+..++..+.. ..+.|+++|+||+|+.... +....+.+.+ ...+.++|+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 147 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEW-GCPFMETSA 147 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSCEEEECT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHh-CCCEEEecC
Confidence 567789999999999987777777777777765432 2468999999999986532 2222222222 345678999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|++++++++....
T Consensus 148 ~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQM 164 (167)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999987654
No 77
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.75 E-value=3.3e-18 Score=155.22 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=104.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+|+|.+|||||||+++|++.+... +..|+.+.....+..+. ....+.+|||||..+ .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG------QTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT------EEEEEEEEECSSSCC------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC------EEEEEEEEECCCCch------------h
Confidence 589999999999999999999876432 22222211112222111 012588999999743 2
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-CCCCCCEEEEEeCCCCcC------hHHHHHHHHHHHHhcCcee
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPE------ARDRLQSLTEEILKIGCDK 425 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kp~ivV~NK~Dl~~------~~e~~~~l~~~l~~~g~~~ 425 (480)
.++..+|++++|+|++++.+++....|.+++..... .....|+++|+||+|+.. ..+....+...+....+.+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 355679999999999988777777776656654422 124689999999999842 1223333333333345678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|++++++++....
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHH
Confidence 99999999999999998665
No 78
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=7.3e-18 Score=155.15 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=101.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC--CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc---cC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GK 345 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~---~~ 345 (480)
...+|+|+|.+|||||||+|+|++.+ ....+.+++|.......+. .++.+|||||+.+.... .+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~l~Dt~G~~~~~~~~~~~~ 90 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----------CcEEEEECCCCCccccCHHHHH
Confidence 45789999999999999999999875 2346677777665544331 36899999997543211 01
Q ss_pred ---ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH---HHHHHHHHH
Q 011645 346 ---GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL 419 (480)
Q Consensus 346 ---gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~---~~~l~~~l~ 419 (480)
.+...+++....+|++++|+|+++.....+.. +...+.. ...|+++|+||+|+....+. .+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 11223334444459999999999877666543 3344543 35899999999999875432 233333333
Q ss_pred h---cCceeeecccccCHHHHHHHHHHhc
Q 011645 420 K---IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~---~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. ..+.++|++++.|+++++++|....
T Consensus 165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 165 IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 2 3456889999999999999987654
No 79
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=160.17 Aligned_cols=162 Identities=19% Similarity=0.117 Sum_probs=112.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.......++.++.+.....+..+.. .-.+.+|||||..... ...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~Dt~g~~~~~------~~~ 89 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE------EVTLVVYDIWEQGDAG------GWL 89 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTE------EEEEEEECCCCCSGGG------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCE------EEEEEEEecCCCccch------hhh
Confidence 3468999999999999999999876555555566555444444332211 1267899999984321 011
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~s 427 (480)
...++..+|++++|+|+++..+++.+..|+.++..+.. ....|+++|+||+|+..... ..++..+.... ..+.++|
T Consensus 90 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 90 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 22346679999999999988777888888888876542 13689999999999975321 11222222222 3466899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
++++.|++++++++....
T Consensus 169 a~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998665
No 80
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.75 E-value=3.9e-18 Score=159.73 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=110.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.+|||||+.+. ...+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQ------IVNLGLWDTAGQEDY-------SRLR 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSC------EEEEEEECCCCCCCC-------CC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCE------EEEEEEEECCCcHHH-------HHHH
Confidence 46899999999999999999997653 234444443332223322210 126899999998543 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH---------HHHHHHHHHhc
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---------LQSLTEEILKI 421 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~---------~~~l~~~l~~~ 421 (480)
..++..+|++++|+|++++.+++... .|..++..+.+ ..|+++|+||+|+...... .++..+....+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 34677899999999999877777665 67778877643 6899999999999764321 22233333333
Q ss_pred ---CceeeecccccCHHHHHHHHHHhcCc
Q 011645 422 ---GCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 422 ---g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+.+++++++.|++++++++......
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 46689999999999999999877643
No 81
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=8.6e-18 Score=153.12 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=108.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+|+|++.... ..+..|+.......+..+.. ...+.+|||||..+. ....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~ 83 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQ------WAILDVLDTAGQEEF-------SAMR 83 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE------EEEEEEEECCSCGGG-------CSSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCc------EEEEEEEECCCchhh-------HHHH
Confidence 468999999999999999999976432 33333333222222222210 124678999997542 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----HHHHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----~e~~~~l~~~l~~~g~~~~s 427 (480)
..++..+|++++|+|++++.+++....+..++..+.. ....|+++|+||+|+... .+..+.+.+.+. ..+.++|
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEec
Confidence 4556789999999999988777777777777755321 246899999999998652 223333333332 5677899
Q ss_pred cc-cccCHHHHHHHHHHhc
Q 011645 428 SE-TELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~-t~~Gi~~ll~~Ls~~~ 445 (480)
++ ++.|+++++++|....
T Consensus 162 a~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 99 9999999999987654
No 82
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=3.7e-18 Score=154.24 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=108.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+|+|++... ...++.|+.......+..+.. ...+.+|||||..+. ...+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~ 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGI------PARLDILDTAGQEEF-------GAMR 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTTT-------SCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCE------EEEEEEEECCCchhh-------HHHH
Confidence 36899999999999999999997642 344555554433333332210 126889999997542 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 428 (480)
..++..+|++++|+|+++..+++....+..++.... ...+.|+++|+||+|+....+. .+........ ..+.++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 455677999999999998776777766666663321 1246899999999999753221 1222222233 34668999
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
+++.|+++++++|....
T Consensus 154 ~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 83
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=1.5e-18 Score=182.45 Aligned_cols=162 Identities=16% Similarity=0.182 Sum_probs=111.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+++|.||||||||+|+|++.+.. ++++++||.+.....+..+. ..+.+|||||+.+.....+.+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~ 245 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK 245 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--------EEEEETTHHHHTCBTTBCCCCSH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--------eEEEEEECCCcCcCccccchHHH
Confidence 3578999999999999999999988765 58899999988776665442 36899999999765443222222
Q ss_pred ----hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-----HHHHHHHHHH-
Q 011645 350 ----NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEIL- 419 (480)
Q Consensus 350 ----~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-----~~~~l~~~l~- 419 (480)
..+.+++++|++++|+|++++.+.++.. +...+.. .++|+++|+||+|+.+..+ ..+.+.+.+.
T Consensus 246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~ 319 (436)
T 2hjg_A 246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 319 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc
Confidence 2345788999999999999988777764 4455543 3689999999999975422 2222333332
Q ss_pred --hcCceeeecccccCHHHHHHHHHHhcC
Q 011645 420 --KIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 420 --~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
...+.++|+.++.|++++++.+.....
T Consensus 320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 320 LDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 234668999999999999998876653
No 84
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=8.3e-18 Score=154.11 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=105.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCC--------CceeeeccceeccCCCCCCccccCCceEEecCCccccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADY--------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~--------pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~ 342 (480)
...+|+|+|.+|||||||++.|.+........ ...|............ .. .....+.+|||||..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~--~~~~~~~i~Dt~G~~~--- 86 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-VK--GFKTRFHLYTVPGQVF--- 86 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCC-SS--SCEEEEEEEECCSCCS---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccccc-cc--CCceEEEEEeCCChHH---
Confidence 44789999999999999999998765432110 1122222111111100 00 0112689999999743
Q ss_pred ccCccchhhhhhhccCCEEEEecccCCCCCh---hhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH
Q 011645 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL 419 (480)
Q Consensus 343 ~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~ 419 (480)
+...+..+++.+|++|+|+|++++... +.+..+...+........+.|+++|+||+|+... ...+++.+.+.
T Consensus 87 ----~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~ 161 (198)
T 3t1o_A 87 ----YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVD 161 (198)
T ss_dssp ----CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHC
T ss_pred ----HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHH
Confidence 333445577889999999999954222 2333444445544444467999999999999764 22334444444
Q ss_pred hc---CceeeecccccCHHHHHHHHHHhc
Q 011645 420 KI---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.. .+.+++++++.|+++++++|....
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 44 456899999999999999998765
No 85
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=3.5e-18 Score=157.28 Aligned_cols=162 Identities=16% Similarity=0.029 Sum_probs=108.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+.. ...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~~------~~~ 86 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE------RIKIQLWDTAGQERFR------KSM 86 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE------EEEEEEEECCCSHHHH------TTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCchhhh------hhh
Confidence 4578999999999999999999976654333333332222222222210 1268999999974421 023
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~s 427 (480)
+..++..+|++|+|+|+++..+++....+..++..+.. ..+.|+++|+||+|+....+. .+...+.... ..+.+++
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEe
Confidence 34567789999999999987777777777777776542 246899999999999753211 1222222233 3567899
Q ss_pred cccc---cCHHHHHHHHHHhc
Q 011645 428 SETE---LSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~---~Gi~~ll~~Ls~~~ 445 (480)
++++ .++++++++|....
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC---
T ss_pred CCcCCcccCHHHHHHHHHHHH
Confidence 9999 99999999986544
No 86
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.74 E-value=4.2e-18 Score=154.84 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=106.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|++.... ..+..|+.+.....+..+. ....+.+|||||+.+. ....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 70 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DRLR 70 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETT------EEEEEEEECCCCSGGG-------TTTG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECC------EEEEEEEEECCCCHhH-------HHHH
Confidence 368999999999999999999976432 2333333222211221111 0125789999998543 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEE 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~~ 417 (480)
..++..+|++++|+|++++.+++... .|..++..+.+ ..|+++|+||+|+.......+ +..+.
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 34567899999999999877676665 57777776542 689999999999976432211 12222
Q ss_pred HHhc---CceeeecccccCHHHHHHHHHHhcC
Q 011645 418 ILKI---GCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 418 l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.... .+.++|++++.|++++++++.....
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 2333 4568999999999999999987763
No 87
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=159.83 Aligned_cols=161 Identities=14% Similarity=0.028 Sum_probs=107.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~ 89 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK------TVKLQIWDTAGQERF-------RS 89 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE------EEEEEEECCTTHHHH-------SC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe------eeEEEEEcCCCcHhH-------HH
Confidence 45679999999999999999999987654444444443333333322210 126899999997542 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~ 426 (480)
.+..++..+|++|+|+|+++..+++....++.++..+.. .+.|+++|+||+|+....+ ...+..+..... .+.++
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 244567889999999999987777777777777776542 4689999999999964321 122233333334 45689
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+++++.|+++++++|....
T Consensus 168 SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 88
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=158.01 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=104.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
+...+|+|+|.+|||||||+++|++..... .+..+++.......+... ...+.+|||||..+ +
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~l~i~Dt~G~~~-------~ 90 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE--------RTVLQLWDTAGQER-------F 90 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTE--------EEEEEEEECTTCTT-------C
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCE--------EEEEEEEECCCCcc-------h
Confidence 445799999999999999999999775432 112222221111122111 12589999999743 3
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH------HH-HHHHHHHHH-
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR------DR-LQSLTEEIL- 419 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~------e~-~~~l~~~l~- 419 (480)
...+..++..+|++|+|+|+++..+++....|+.++..+.. ...|+++|+||+|+.... +. .+...+...
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~ 168 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT 168 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHH
Confidence 34456677889999999999987777777778777776542 368999999999996321 00 111222222
Q ss_pred -hcCceeeecccccCHHHHHHHHHHhc
Q 011645 420 -KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 -~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+.+++++++.|+++++++|....
T Consensus 169 ~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 23466889999999999999998665
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.74 E-value=7.8e-18 Score=149.12 Aligned_cols=157 Identities=19% Similarity=0.146 Sum_probs=106.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|.+.... ..++.|+.......+..... ...+.+|||||..+. ...+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~~-------~~~~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCSSC-------CHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCE------EEEEEEEECCCchhh-------hHHHH
Confidence 47999999999999999999976532 22333332222222221110 125789999997432 22334
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCceeeecc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVTSE 429 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~~sa~ 429 (480)
.++..+|++++|+|+++..+.+....+..++..+.. ..+.|+++|+||+|+.... +....+.+.+ ...+.+++++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 147 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSY-GIPYIETSAK 147 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEEECTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHc-CCeEEEecCC
Confidence 567789999999999987666777777777766532 2368999999999987532 2233333222 3457789999
Q ss_pred cccCHHHHHHHHHHhc
Q 011645 430 TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~ 445 (480)
++.|++++++++....
T Consensus 148 ~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREI 163 (166)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997654
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=4e-18 Score=155.99 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=107.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++.+ ...+.. |.......+..+. ..+.+|||||+.+. ...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~-------~~~ 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNIKTLEHRG--------FKLNIWDVGGQKSL-------RSY 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEEEEEEETT--------EEEEEEEECCSHHH-------HTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccceEEEEECC--------EEEEEEECCCCHhH-------HHH
Confidence 45789999999999999999999876 322222 2222222332221 37899999998542 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------hcCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~~g~ 423 (480)
+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. ...+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEE
Confidence 4556788999999999998877777666666655421 124689999999999976422 233333332 1235
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|++++++++....
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6889999999999999998665
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=5.3e-18 Score=155.17 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.+... + ..|.......+..+ +..+.+|||||+.+. ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~ 81 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVH--T-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESL-------RSS 81 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEE--E-ECCSSSSCEEEEET--------TEEEEEEEESSSGGG-------TCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCc--c-CCcCceeeEEEEEC--------CEEEEEEECCCCHhH-------HHH
Confidence 34689999999999999999999875411 0 11111112222222 137899999998542 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----hc--Cc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~ 423 (480)
+..++..+|++++|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. .. .+
T Consensus 82 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEE
Confidence 4566788999999999999888877766666655321 124689999999999976311 122322221 11 35
Q ss_pred eeeecccccCHHHHHHHHHH
Q 011645 424 DKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
.++|++++.|+++++++|..
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHT
T ss_pred EEccCCCCcCHHHHHHHHHh
Confidence 68999999999999999864
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=4.6e-18 Score=159.35 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=109.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.+|||||+.+. ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 94 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY-------DRL 94 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C------EEEEEEEEECCSGGG-------TTT
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE------EEEEEEEECCCchhh-------HHH
Confidence 346899999999999999999997543 234455554443333333221 125679999998442 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHH
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTE 416 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~ 416 (480)
+..++..+|++++|+|+++..+++... .|..++..+. .+.|+++|+||+|+....+..+ +...
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 445678899999999999877777765 6777777654 4689999999999976543221 1222
Q ss_pred HHHhcC---ceeeecccccCHHHHHHHHHHh
Q 011645 417 EILKIG---CDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 417 ~l~~~g---~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.....+ +.++|++++.|++++++++...
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 233333 6689999999999999998754
No 93
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=5.7e-18 Score=156.11 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=107.3
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.+...+|+|+|.+|||||||+++|++.+......| |.......+... ...+.+|||||..+. .
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~ 81 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKG--------NVTIKLWDIGGQPRF-------R 81 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEET--------TEEEEEEEECCSHHH-------H
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeC--------CEEEEEEECCCCHhH-------H
Confidence 35567899999999999999999997664322222 222222223222 137899999997542 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------c
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------I 421 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~ 421 (480)
..+..++..+|++++|+|+++...++....++.++.... ...+.|+++|+||+|+....+ .+++.+.+.. .
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREI 159 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCe
Confidence 234556788999999999998777776666655554321 124689999999999976421 1222222221 2
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++|++++.|+++++++|....
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998665
No 94
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=157.22 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=109.3
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.+...+|+|+|.+|||||||+|+|++.... ..++.|+.......+..... ...+.+|||||..+. .
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~ 86 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD------EFHLHLVDTAGQDEY-------S 86 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------CEEEEEEEECCCCTT-------C
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE------EEEEEEEECCCccch-------H
Confidence 345679999999999999999999987654 33334443332333332211 126799999997543 2
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCce
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCD 424 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~ 424 (480)
..+..++..+|++++|+|+++..+++....+..++..+.. ....|+++|+||+|+.... +....+... ....+.
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~ 164 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVEGKKLAES-WGATFM 164 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHHHHHHHHH-hCCeEE
Confidence 2234567789999999999988777777777777765421 2368999999999987532 222222222 223566
Q ss_pred eeecccccCHHHHHHHHHHhcC
Q 011645 425 KVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++|++++.|+++++++|.....
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987763
No 95
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.74 E-value=1.2e-18 Score=163.80 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=106.6
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCC----CccccCCceEEecCCcccccccccC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
....+|+|+|.+|||||||+++|++........+.++.+.....+.+.... ........+.||||||..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------ 96 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER------ 96 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh------
Confidence 455799999999999999999999876532222222222222222211100 0000013689999999743
Q ss_pred ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cC
Q 011645 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IG 422 (480)
Q Consensus 346 gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g 422 (480)
+...+..++..+|++|+|+|+++...++....|+.++..+. .....|+++|+||+|+....+. .+...+.... ..
T Consensus 97 -~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 97 -FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp -HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred -HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 23345567789999999999997655555554444443221 1146899999999999753211 2223333333 35
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.+++++++.|+++++++|....
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998765
No 96
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.74 E-value=1.6e-18 Score=171.36 Aligned_cols=157 Identities=23% Similarity=0.351 Sum_probs=113.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc--Cccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~--~gl~~~ 350 (480)
.+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.+|||||+.+..... ..+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--------HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--------CEEEEEECCCCSCSCC----CCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--------CceEEEECcCCCccccccccCCHHHH
Confidence 5899999999999999999999887779999999998888876542 378999999987643211 112122
Q ss_pred hhhh---hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCce
Q 011645 351 FLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD 424 (480)
Q Consensus 351 fl~~---i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~ 424 (480)
+.++ .+.+|++++|+|+++. +....+...+... +.|+++|+||+|+..... ..+.+.+.+ ...+.
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i 146 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNL---ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVI 146 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEE
T ss_pred HHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEE
Confidence 2222 3689999999999873 3333444455543 589999999999864321 233343333 25677
Q ss_pred eeecccccCHHHHHHHHHHhcC
Q 011645 425 KVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
++++.++.|++++++++.....
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999986653
No 97
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=7.1e-18 Score=155.47 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=106.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+|+|++........+ |.-......+..+. ....+.+|||||..+. ...+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~ 73 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDK------SVCTLQITDTTGSHQF-------PAMQ 73 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETT------EEEEEEEEECCGGGSC-------HHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECC------EEEEEEEEeCCChHHh-------HHHH
Confidence 46899999999999999999997654321111 11111011111110 0126899999997542 2334
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeeecc
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 429 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~ 429 (480)
..++..+|++++|+|+++..+++....++..+..+.......|+++|+||+|+.......+........ ..+.++++.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAK 153 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecC
Confidence 456778999999999998766666666666666543323468999999999997532212222223333 346689999
Q ss_pred cccCHHHHHHHHHHhcCc
Q 011645 430 TELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 430 t~~Gi~~ll~~Ls~~~~~ 447 (480)
++.|+++++++|......
T Consensus 154 ~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 154 MNYNVKELFQELLTLETR 171 (199)
T ss_dssp TTBSHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999876643
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=6.8e-18 Score=154.94 Aligned_cols=158 Identities=20% Similarity=0.159 Sum_probs=104.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.+|||||..+. ...+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC----------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCE------EEEEEEEECCChHHH-------HHHHH
Confidence 5899999999999999999997643 233444443333223322210 125899999997542 22234
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCceeeeccc
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 430 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~t 430 (480)
.+++.+|++++|+|+++..++++...|..++..+.. ..+.|+++|+||+|+.......+++.+.... ..+.++++.+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 166 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKT 166 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 556789999999999987777777777777776542 2368999999999987522112222333332 4577899999
Q ss_pred ccCHHHHHHHHHHhc
Q 011645 431 ELSSEDAVKSLSTEG 445 (480)
Q Consensus 431 ~~Gi~~ll~~Ls~~~ 445 (480)
+.|+++++++|....
T Consensus 167 ~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 167 RQGVEDAFYTLVREI 181 (190)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998665
No 99
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.5e-18 Score=160.30 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=108.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...++|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..+. ..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 77 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK------RIKAQIWDTAGQERY-------RA 77 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE------EEEEEEECCTTTTTT-------TC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCccch-------hh
Confidence 34579999999999999999999987655433343333332222322210 126899999997442 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHhc--Cceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~ 426 (480)
.+..++..+|++|+|+|++++.+++....|+.++..+.. ...|+++|+||+|+....+. .++..+..... .+.++
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 334567789999999999988777887778888876542 36899999999999753211 12223333333 45578
Q ss_pred ecccccCHHHHHHHHHHhcCc
Q 011645 427 TSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+++++.|+++++++|......
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877643
No 100
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.74 E-value=9.7e-18 Score=163.26 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=107.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCc--eeeeccceeccCCCCCCccccCCceEEecCCccccccccc-Cccch
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF--TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGR 349 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pf--TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~-~gl~~ 349 (480)
.+|+|+|.+|||||||+|+|++.+..+..+++ +|..+..+.+.... ..+.||||||+.+..... ..+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--------CHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--------EEEEEEECCSCSSTTHHHHSTTSH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--------cEEEEEECCCCCCCCCCcHHHHHH
Confidence 57999999999999999999999887765554 77777666665432 379999999997643322 33333
Q ss_pred hhhhhh----ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HHHH-----HHHHHHH
Q 011645 350 NFLRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL-----QSLTEEI 418 (480)
Q Consensus 350 ~fl~~i----~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e~~-----~~l~~~l 418 (480)
.+.+.+ ..+|++|+|+|++. ....+...+......+.+...+.|+|+|.||+|+... .+.+ +.+.+.+
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 333443 88999999999985 4444444444444445544457899999999999753 2222 2345555
Q ss_pred HhcCceee--ecc-----cccCHHHHHHHHHHhcC
Q 011645 419 LKIGCDKV--TSE-----TELSSEDAVKSLSTEGG 446 (480)
Q Consensus 419 ~~~g~~~~--sa~-----t~~Gi~~ll~~Ls~~~~ 446 (480)
...+...+ +.. .+.++.++++.+.....
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 66654433 222 25789999988876653
No 101
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=8.5e-18 Score=154.45 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=103.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccce----eccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
..+|+++|.+|||||||+++|++.... ...|..| .+..+ ...+.+|||||... +
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-------~~~~t~g~~~~~~~~~--------~~~l~i~Dt~G~~~-------~ 73 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS-------HITPTQGFNIKSVQSQ--------GFKLNVWDIGGQRK-------I 73 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE-------EEEEETTEEEEEEEET--------TEEEEEEECSSCGG-------G
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-------cccCcCCeEEEEEEEC--------CEEEEEEECCCCHH-------H
Confidence 468999999999999999999976431 1222222 22222 12689999999743 3
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-------h
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K 420 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-------~ 420 (480)
...+..++..+|++++|+|+++..+++....++.++... ......|+++|+||+|+..... .+++.+.+. .
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 151 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRV 151 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCc
Confidence 334566778999999999999877666665555544321 1124689999999999976422 223333221 1
Q ss_pred cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 ~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|++++.|+++++++|....
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 152 WQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred eEEEEccCCCCCCHHHHHHHHHHHH
Confidence 2356889999999999999998665
No 102
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.73 E-value=8.8e-18 Score=173.12 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=106.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc-cccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a-~~~~gl~~~f 351 (480)
..|+|+|+||||||||+|+|++....+++++|+|+++..+.+.++. ..+.++||||++... +.-..-....
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--------~~v~l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--------RKIMLVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--------EEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--------EEEEEEeCCCchhcCCHHHHHHHHHH
Confidence 3499999999999999999999887778999999999888886543 268999999986531 1100001234
Q ss_pred hhhhccCCEEEEecccCCCC--ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHHHHhc-----C
Q 011645 352 LRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKI-----G 422 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~l~~~-----g 422 (480)
+.++..+|++++|+|++++. ..+....+.+.|..+. ...+|+++|+||+|+.... .....+......+ .
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 56678899999999998764 3444444555555543 2468999999999997542 1112221111222 3
Q ss_pred ceeeecccccCHHHHHHHHHHhc
Q 011645 423 CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++|+.++.|++++++.|.+..
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHh
Confidence 56889999999999999987654
No 103
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=7.6e-18 Score=168.95 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=112.4
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCccc-ccc-cccCccchh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGA-HLGKGLGRN 350 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGli-e~a-~~~~gl~~~ 350 (480)
.|+|+|.||||||||+|+|++.+..+ ++.|+||.+...+.+.... .++.++||||+. +.. ..++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--------~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--------YQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--------EEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--------eeEEEEECcCCCccchhhHHHHHHHH
Confidence 69999999999999999999987654 6788899877677664332 378999999986 221 111122333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-hcC---ceee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIG---CDKV 426 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-~~g---~~~~ 426 (480)
..+.++.+|++++|+|++. ....+ ..+.+.+.. ...|+++|+||+|+....+.+....+.+. ..+ +.++
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 4566788999999999986 33333 334444442 36899999999999873333333333343 344 4578
Q ss_pred ecccccCHHHHHHHHHHhcCc
Q 011645 427 TSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+++++.+++++++.+......
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB
T ss_pred ECCCCCCHHHHHHHHHHhCCc
Confidence 999999999999999876643
No 104
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=2e-18 Score=169.43 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=113.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccc--ccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~--~~~gl~~ 349 (480)
..+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.+|||||+..... ..+.+.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~e~v~~ 76 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--------YTINLIDLPGTYSLGYSSIDEKIAR 76 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--------eEEEEEECCCcCccCCCCHHHHHHH
Confidence 36899999999999999999999887788999999988887776432 3799999999865321 1112333
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~ 426 (480)
.++.. +.+|++++|+|+++.+ ....+..++.. .+.|+++|+||+|+..... ..+.+.+.+ ...+.++
T Consensus 77 ~~~~~-~~~d~ii~V~D~t~~~---~~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~ 146 (258)
T 3a1s_A 77 DYLLK-GDADLVILVADSVNPE---QSLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFT 146 (258)
T ss_dssp HHHHH-SCCSEEEEEEETTSCH---HHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEEC
T ss_pred HHHhh-cCCCEEEEEeCCCchh---hHHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEE
Confidence 44332 5799999999998742 22334455553 3689999999999864321 123333333 2466789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.++.|++++++++....
T Consensus 147 SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHh
Confidence 9999999999999997654
No 105
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.73 E-value=1.9e-17 Score=158.61 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=107.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
+||+|||.+|||||||+++++...... .|..|. .+.....+..+.. .-.+.||||+|..+. ....
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~------~v~l~iwDtaGqe~~-------~~l~ 79 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDR------TIRLQLWDTAGLERF-------RSLI 79 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSC------EEEEEEECCSCTTTC-------GGGH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecce------EEEEEEEECCCchhh-------hhHH
Confidence 489999999999999999998764322 121111 1111111221110 126889999998543 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~s 427 (480)
..+++.++++++|+|.++..+++.+..|+.++..+.. .+.|+++|+||+|+...+ +..+.+.+.+ ...+.++|
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~S 156 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMFIETS 156 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEB
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCeeEEEe
Confidence 4567889999999999999999999999988876543 358999999999997542 2333333332 23467899
Q ss_pred cccccCHHHHHHHHHHhcC
Q 011645 428 SETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~ 446 (480)
|+++.|++++|+.|...+.
T Consensus 157 Aktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=5.5e-18 Score=179.13 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=113.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc-
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL- 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl- 347 (480)
....+|+++|.+|+|||||+|+|++.+. .++++++||.+.....+..+. ..+.+|||||+.+........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e 264 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTE 264 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--------EEEEETTGGGTTTBTTBCCCCS
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--------ceEEEEECCCCCcCcccchHHH
Confidence 3467999999999999999999998765 458899999988877766542 379999999987654322211
Q ss_pred ---chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH-HHHHHHHHHHH----
Q 011645 348 ---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEIL---- 419 (480)
Q Consensus 348 ---~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e~~~~l~~~l~---- 419 (480)
....+.++++||++|+|+|++......+. .+...+.. .++|+++|+||+|+.... ...+++.+.+.
T Consensus 265 ~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 338 (456)
T 4dcu_A 265 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ 338 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc
Confidence 12345678999999999999986654443 45555554 368999999999997532 22233333332
Q ss_pred ---hcCceeeecccccCHHHHHHHHHHhc
Q 011645 420 ---KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ---~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+.++|++++.|++++++.+....
T Consensus 339 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 339 FLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 23567899999999999999988665
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.73 E-value=1.3e-17 Score=155.48 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=106.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+|+|.+|||||||+++|++...... +..|+.......+..+. ....+.+|||||..+. ...+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDG------KQVELALWDTAGQEDY-------DRLR 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETT------EEEEEEEECCCCSGGG-------TTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECC------EEEEEEEEECCCchhH-------HHHH
Confidence 35899999999999999999998764332 22222222112222111 0126899999997542 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEE 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~~ 417 (480)
..++..+|++++|+|+++..+++.. ..|..++..+. .+.|+++|+||+|+.......+ +..+.
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 4467789999999999987666666 56777777654 3689999999999986532221 22222
Q ss_pred HHhc---CceeeecccccCHHHHHHHHHHhc
Q 011645 418 ILKI---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+ .+.++|++++.|++++++++....
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3333 356889999999999999987654
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=2.6e-18 Score=157.28 Aligned_cols=157 Identities=22% Similarity=0.376 Sum_probs=112.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--cCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~~gl~~~ 350 (480)
.+|+|+|.+|||||||+++|++....+..+|++|.+...+.+.... ..+.+|||||+.+.... .+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--------cEEEEEECCCcCccccccHHHHHHHH
Confidence 5799999999999999999998776667889989888777775442 37899999998653211 0112222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHHHHHHHHhcCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~l~~~l~~~g~~~~s 427 (480)
+++. ..+|++++|+|.+. .+....+..++.. .+.|+++|+||+|+.... +..+.+.+.+ ...+.++|
T Consensus 80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 149 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEE
Confidence 2221 35899999999985 3444555556654 368999999999986432 1233333332 24677899
Q ss_pred cccccCHHHHHHHHHHhcCc
Q 011645 428 SETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~~ 447 (480)
++++.|++++++++......
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877633
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=5.4e-18 Score=154.22 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=101.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++.+... +. .|.......+.++ ...+.+|||||+.+. ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~-~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~ 78 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVT--TK-PTIGFNVETLSYK--------NLKLNVWDLGGQTSI-------RPY 78 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE--EC-SSTTCCEEEEEET--------TEEEEEEEEC----C-------CTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCc--cC-CcCccceEEEEEC--------CEEEEEEECCCCHhH-------HHH
Confidence 34689999999999999999999654311 10 1111111222221 137899999998542 223
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------cCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~g~ 423 (480)
+..++..+|++++|+|+++..+++....++.++..+. ...+.|+++|+||+|+..... .+++.+.+.. ..+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 4566788999999999998877777666655554321 135689999999999976421 2233333221 135
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|+++++++|....
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHH
Confidence 6899999999999999997655
No 110
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=1.7e-17 Score=153.22 Aligned_cols=153 Identities=17% Similarity=0.118 Sum_probs=105.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+|+|.+|||||||+++|++........| | .......+..+.. .-.+.+|||||....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t-~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~----------- 80 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-E-GGRFKKEIVVDGQ------SYLLLIRDEGGPPEL----------- 80 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-T-CEEEEEEEEETTE------EEEEEEEECSSSCCH-----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-C-cceEEEEEEECCE------EEEEEEEECCCChhh-----------
Confidence 36899999999999999999987654322112 1 1111122222210 125788999998432
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh------HHHHHHHHHHHHhcCcee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIGCDK 425 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~------~e~~~~l~~~l~~~g~~~ 425 (480)
+++..+|++++|+|+++..+++....|..++..+.. ....|+++|+||+|+... .+....+...+....+.+
T Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 81 -QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred -heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 156679999999999998778887778888876531 236899999999998421 222333333333345678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|++++++++....
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998665
No 111
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2e-17 Score=153.29 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=108.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++.+... .+..|+.......+..+. ....+.+|||||+.+ ...+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~--------~~~~ 92 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD------EVVSMEILDTAGQED--------TIQR 92 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCC--------CHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC------EEEEEEEEECCCCCc--------ccch
Confidence 4689999999999999999999875432 233232222111122111 012689999999854 2234
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceeee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~s 427 (480)
..++..+|++++|+|++++.+++....+..++..+.. ....|+++|+||+|+.... +....+.+.+ ...+.+++
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 170 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYECS 170 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEECC
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEEC
Confidence 5667789999999999987777777777777776432 2468999999999997531 2222332222 34566899
Q ss_pred ccccc-CHHHHHHHHHHhc
Q 011645 428 SETEL-SSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~-Gi~~ll~~Ls~~~ 445 (480)
++++. |+++++++|....
T Consensus 171 a~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREV 189 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHH
Confidence 99999 9999999998665
No 112
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=9.8e-19 Score=185.56 Aligned_cols=162 Identities=25% Similarity=0.276 Sum_probs=108.9
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC-
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK- 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~- 345 (480)
.++...+|+|+|.||||||||+|+|++.+.. +.++|+||.+.....+..+. ..+.+|||||+.+....-+
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--------~~v~liDT~G~~~~~~~ve~ 291 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--------IPVQVLDTAGIRETSDQVEK 291 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--------EEEEECC-------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--------EEEEEEECCccccchhHHHH
Confidence 4567789999999999999999999987654 58899999888766665442 3789999999976433222
Q ss_pred -ccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcCce
Q 011645 346 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 424 (480)
Q Consensus 346 -gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g~~ 424 (480)
++. ..+.++..+|++|+|+|++++...++ ..++..+. .+|+++|+||+|+...... ..+.+......+.
T Consensus 292 ~gi~-~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~~~-~~~~~~~~~~~~i 361 (462)
T 3geh_A 292 IGVE-RSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQLI-TSLEYPENITQIV 361 (462)
T ss_dssp --------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGGGS-TTCCCCTTCCCEE
T ss_pred HHHH-HHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcchhh-HHHHHhccCCcEE
Confidence 222 24567788999999999998766554 33444442 3799999999999865331 1111111234567
Q ss_pred eeecccccCHHHHHHHHHHhcCc
Q 011645 425 KVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
++|++++.|+++++++|.+....
T Consensus 362 ~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 362 HTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999887643
No 113
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=5.9e-17 Score=165.95 Aligned_cols=163 Identities=27% Similarity=0.415 Sum_probs=119.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC-ccc-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLG- 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~-gl~- 348 (480)
...+|+++|.||||||||+|+|++....+.+++++|.+...+.+.... ..+.+|||||+.+...... .+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--------FRYQIIDTPGLLDRPISERNEIEK 237 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--------EEEEEEECTTTSSSCSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--------ceEEEEeCCCccccchhhhhHHHH
Confidence 457899999999999999999999887778899999888777654331 2689999999976432111 111
Q ss_pred hhhhhhhccCCEEEEecccCCCC--ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh--cCce
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCD 424 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~--~g~~ 424 (480)
..+......+|++++|+|++... ..+....+..++..... ++|+++|+||+|+....+ .+...+.+.. ..+.
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI 313 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence 22222234589999999998765 55666667777765432 689999999999987543 3334343333 3567
Q ss_pred eeecccccCHHHHHHHHHHhc
Q 011645 425 KVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 425 ~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++|+.+++|++++++++.+..
T Consensus 314 ~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 314 KISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ECBTTTTBTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999998766
No 114
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=3.4e-19 Score=165.83 Aligned_cols=160 Identities=15% Similarity=0.139 Sum_probs=106.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+|+|++........+.+|.+.....+..+.. ...+.+|||||..+. ..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQERF-------RT 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE------EEEEEEECCTTCTTC-------CC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE------EEEEEEEECCCcHhH-------HH
Confidence 45679999999999999999999987655544455554444444433211 126899999997442 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~ 425 (480)
.+..++..+|++++|+|+++..+++....|+.++..+.. .+.|+++|+||+|+....+ ..+.+...+ ...+.+
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~ 174 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLE 174 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEE
Confidence 344567789999999999998888888888888876542 3689999999999975321 122222211 245678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+|++++.|+++++++|....
T Consensus 175 vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCC---HHHHHHHHHHTTTT
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999987554
No 115
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-17 Score=156.08 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=104.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+|+|.+|||||||+++|++..... .+..|+.......+..+. ....+.+|||||..+. ...+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 90 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG------KQVELALWDTAGQEDY-------DRLR 90 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT------EEEEEEEEECTTCTTC-------TTTG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence 3589999999999999999999876432 232333222111222111 0126899999997543 2233
Q ss_pred hhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHH-------------HHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-------------TEE 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l-------------~~~ 417 (480)
..++..+|++++|+|+++..+++.. ..|..++..+. .+.|+++|+||+|+....+..+.+ .+.
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 4567789999999999987666666 55677777654 368999999999997653322211 122
Q ss_pred HHhc---CceeeecccccCHHHHHHHHHHhc
Q 011645 418 ILKI---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.... .+.++|++++.|+++++++|....
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2233 356889999999999999998765
No 116
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=2.1e-17 Score=156.30 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=108.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+..+.. ...+.+|||||..+. ...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 91 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQ------RVELSLWDTSGSPYY-------DNV 91 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--C------EEEEEEEEECCSGGG-------TTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCE------EEEEEEEECCCCHhH-------HHH
Confidence 4468999999999999999999987543 33333332222222222211 126899999998543 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhh-HHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh----------------HHHHHH
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQS 413 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~----------------~e~~~~ 413 (480)
+..++..+|++|+|+|+++..+++. ...|..++..+. .+.|+++|+||+|+... .+....
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 3445678999999999999877777 677888888764 36899999999999752 112222
Q ss_pred HHHHHHhcCceeeecccccC-HHHHHHHHHHhc
Q 011645 414 LTEEILKIGCDKVTSETELS-SEDAVKSLSTEG 445 (480)
Q Consensus 414 l~~~l~~~g~~~~sa~t~~G-i~~ll~~Ls~~~ 445 (480)
+...+....+.++|++++.| ++++++++....
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 32222211456899999998 999999998765
No 117
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=158.37 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=97.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
-.+|+|+|.+|||||||+++|++.... ..+..|+.+.....+..+.. ...+.+|||||..+. ...+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~~~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGK------PVHLHIWDTAGQDDY-------DRLR 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTE------EEEEEEEEC-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCE------EEEEEEEECCCchhh-------hHHH
Confidence 468999999999999999999976532 23333443332222222110 126899999997542 2223
Q ss_pred hhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------HHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEE 417 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~l~~~ 417 (480)
..++..+|++++|+|++++.+++... .|..++..+. ...|+++|+||+|+.......+ +..+.
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 34567899999999999877666664 5777777654 3689999999999986543211 22233
Q ss_pred HHhc---CceeeecccccCHHHHHHHHHHhc
Q 011645 418 ILKI---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.... .+.++|++++.|++++++++....
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 3333 456899999999999999998665
No 118
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.72 E-value=2e-17 Score=151.80 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=105.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+++|.+|||||||+++|++.... ..+..|+.......+..+.. ...+.+|||||..+. ....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNVR 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSC------EEEEEEEEECCSGGG-------TTTG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCE------EEEEEEEECCCChhh-------hhhH
Confidence 368999999999999999999976542 22222322222222222210 126899999997543 1223
Q ss_pred hhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----------------HHHHHH
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSL 414 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----------------e~~~~l 414 (480)
..++..+|++++|+|++++.+++.. ..|..++..+. ...|+++|+||+|+.... +....+
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 3456789999999999987777666 56777777664 368999999999997431 112222
Q ss_pred HHHHHhcCceeeecc-cccCHHHHHHHHHHhc
Q 011645 415 TEEILKIGCDKVTSE-TELSSEDAVKSLSTEG 445 (480)
Q Consensus 415 ~~~l~~~g~~~~sa~-t~~Gi~~ll~~Ls~~~ 445 (480)
.+.+....+.++|++ ++.|++++++.+....
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 222222456789998 6899999999987654
No 119
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=160.94 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=98.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCC--ceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc--
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-- 346 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g-- 346 (480)
...+|+|+|.+|||||||+|+|++.......++ ++|..+....+.... ..+.||||||+.+.......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--------TELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--------EEEEEEECCSCC-----CHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--------ceEEEEECCCccCCCCCHHHHH
Confidence 456899999999999999999999887666666 667766666554332 37899999999876443332
Q ss_pred --cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-------HHHHHH
Q 011645 347 --LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTEE 417 (480)
Q Consensus 347 --l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-------~~l~~~ 417 (480)
+...+....+.+|++|+|+|++.... .+...+...+..+... ..+|+++|+||+|+....+.. +.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 33333344556799999999985443 3444343333322211 236999999999987643221 234444
Q ss_pred HHhcCceee--ecc-----cccCHHHHHHHHHHhc
Q 011645 418 ILKIGCDKV--TSE-----TELSSEDAVKSLSTEG 445 (480)
Q Consensus 418 l~~~g~~~~--sa~-----t~~Gi~~ll~~Ls~~~ 445 (480)
+...+...+ +.. ...++.++++.+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 555554333 222 2367888888776554
No 120
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=1.6e-17 Score=154.24 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=101.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.+.. .. ..|.......+... ...+.+|||||..+. ...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~ 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK--------NICFTVWDVGGQDKI-------RPL 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEET--------TEEEEEEECC------------CTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEEC--------CEEEEEEECCCCHhH-------HHH
Confidence 3468999999999999999999876532 11 11222222223222 137899999998542 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------cCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~g~ 423 (480)
+..++..+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+.. ..+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 4556788999999999998776766665555554321 124689999999999976421 2233332221 135
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|+++++++|....
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHT
T ss_pred EECcCCCcCCHHHHHHHHHHHH
Confidence 6899999999999999998655
No 121
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.71 E-value=2.7e-17 Score=175.08 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=114.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.||||||||+|+|++.+. +. .++|+......+.+.. ..+.+|||||..+ +...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~ 382 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKN--------VKFNVWDVGGQDK-------IRPL 382 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSS--------CEEEEEEECCCGG-------GSGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCC--------EEEEEEECCCcHH-------HHHH
Confidence 457899999999999999999998763 22 2346666666665543 2799999999754 3344
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh-------cCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~-------~g~ 423 (480)
+..+++.+|++|+|+|++++.+++....++.++.... ...++|+|+|+||+|+..... .+++.+.+.. ..+
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYV 460 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhh-hcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEE
Confidence 6678899999999999998877777776666664321 224689999999999976422 2233333221 125
Q ss_pred eeeecccccCHHHHHHHHHHhcC
Q 011645 424 DKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.++|+.+++|+++++++|.+...
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987763
No 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.71 E-value=7.2e-18 Score=156.27 Aligned_cols=165 Identities=21% Similarity=0.197 Sum_probs=83.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
+...+|+|+|.+|||||||+++|++..... ..+..|+ .+.....+..+... ....+.+|||||+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~------- 86 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT----VSVELFLLDTAGSDLY------- 86 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSS----EEEEEEEEETTTTHHH-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc----cEEEEEEEECCCcHHH-------
Confidence 345789999999999999999999874333 3444444 24444444433100 0126899999998542
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC-CCCCCEEEEEeCCCCcC-hHH-HHHHHHHHHHhc--C
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE-ARD-RLQSLTEEILKI--G 422 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kp~ivV~NK~Dl~~-~~e-~~~~l~~~l~~~--g 422 (480)
...+..++..+|++++|+|++++.+++....|..++..+... ....|+++|+||+|+.. ..+ ..++..+....+ .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~ 166 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD 166 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE
Confidence 233456678899999999999887777878888888776431 23689999999999976 221 123333344444 4
Q ss_pred ceeeeccc-ccCHHHHHHHHHHhc
Q 011645 423 CDKVTSET-ELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ~~~~sa~t-~~Gi~~ll~~Ls~~~ 445 (480)
+.++++++ +.|++++++++....
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EEECCC-------CHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHH
Confidence 56889999 999999999998765
No 123
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.71 E-value=2.7e-17 Score=154.98 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=106.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+..+.. ...+.+|||||.... ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 92 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNV 92 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSS------EEEEEEEEECCSGGG-------TTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCE------EEEEEEEeCCCcHhh-------hHH
Confidence 4578999999999999999999986543 22222322222222222210 126899999997543 112
Q ss_pred hhhhhccCCEEEEecccCCCCChhhH-HHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH----------------HHHHH
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQS 413 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----------------e~~~~ 413 (480)
...++..+|++|+|+|+++..+++.. ..|..++..+. ...|+++|+||+|+.... +....
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 23456789999999999987777766 56777787764 368999999999997431 11222
Q ss_pred HHHHHHhcCceeeecc-cccCHHHHHHHHHHhc
Q 011645 414 LTEEILKIGCDKVTSE-TELSSEDAVKSLSTEG 445 (480)
Q Consensus 414 l~~~l~~~g~~~~sa~-t~~Gi~~ll~~Ls~~~ 445 (480)
+.+.+....+.++|++ ++.|++++++.+....
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 2222222346789998 6899999999987554
No 124
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=1.9e-17 Score=152.06 Aligned_cols=155 Identities=20% Similarity=0.179 Sum_probs=103.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+++|.+|||||||+++|++.+.. ...| |.......+..+ ...+.+|||||+.+. ...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~-------~~~ 82 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYK--------NISFEVWDLGGQTGV-------RPY 82 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEET--------TEEEEEEEECCSSSS-------CCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEEC--------CEEEEEEECCCCHhH-------HHH
Confidence 3468999999999999999999865431 1111 211222222222 137899999998543 222
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH-----h--cCc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~ 423 (480)
+..+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+....+ .+++.+.+. . ..+
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEE
Confidence 3445678999999999998887777666555554321 234689999999999976422 122222221 1 135
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|++++++++....
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEccCCCccCHHHHHHHHHHHH
Confidence 6899999999999999998665
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.71 E-value=2.8e-17 Score=165.09 Aligned_cols=164 Identities=17% Similarity=0.103 Sum_probs=114.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+|+|+|.+|||||||+|+|++... ..++++++|++...+.+.... ...+.+|||||+..... .-+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~--~~~~~~ 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFME--NYFTKQ 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHH--HHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhh--hhhhhH
Confidence 36899999999999999999987744 446788999888877765321 13789999999854200 000122
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-------HHHHHHHHHhcC-
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG- 422 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-------~~~l~~~l~~~g- 422 (480)
+...++.+|++++|+|+++..+++++..|.+.+........+.|+++|+||+|+....+. .+.+.+....++
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 344567899999999999988888776665544432111236899999999999873222 133444444544
Q ss_pred ----ceeeecccccCHHHHHHHHHHhc
Q 011645 423 ----CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 423 ----~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.++|+++ .++.+++..+....
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 45789888 88888888877654
No 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.70 E-value=4.8e-17 Score=152.50 Aligned_cols=159 Identities=21% Similarity=0.135 Sum_probs=97.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch-
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR- 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~- 349 (480)
...+|+|+|.+|||||||+++|++.. ....++.++.+. ..+..+.. -...+.+|||||+.+. ..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~~--~~~~~~~~-----~~~~~~i~Dt~G~~~~-------~~~ 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSS--AIYKVNNN-----RGNSLTLIDLPGHESL-------RFQ 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCEE--EEEECSST-----TCCEEEEEECCCCHHH-------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCcceee--EEEEecCC-----CccEEEEEECCCChhH-------HHH
Confidence 34689999999999999999999765 234455333322 22332210 0126899999998542 22
Q ss_pred hhhhhhccCCEEEEecccCCCC-Chh-hHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh---HHHHHHHHHHHH-----
Q 011645 350 NFLRHLRRTRLLVHVIDAAAEN-PVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRLQSLTEEIL----- 419 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~-~~~-~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~---~e~~~~l~~~l~----- 419 (480)
.+..++..+|++++|+|+++.. ... ....|..++..........|+++|+||+|+... .+..+.+.+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 2334577899999999998621 111 222333333332111235899999999999754 223333443333
Q ss_pred --------------------------------hcCceeeecccc------cCHHHHHHHHHHh
Q 011645 420 --------------------------------KIGCDKVTSETE------LSSEDAVKSLSTE 444 (480)
Q Consensus 420 --------------------------------~~g~~~~sa~t~------~Gi~~ll~~Ls~~ 444 (480)
...+.++|++++ .|+++++++|...
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 223557899999 9999999998753
No 127
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=2.6e-17 Score=173.10 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=108.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc-Cc--
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KG-- 346 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~-~g-- 346 (480)
...+|+|+|.||||||||+|+|++.... ++++|+||.++..+.+..++ ..+.+|||||+....... +.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--------~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--------RKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--------EEEEESSCSCC-----------C
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--------EEEEEEECCCCccccccchhhHH
Confidence 4579999999999999999999998764 58999999999888876543 368999999985432211 11
Q ss_pred -c-chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHH----HHHHHHH
Q 011645 347 -L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQ----SLTEEIL 419 (480)
Q Consensus 347 -l-~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~----~l~~~l~ 419 (480)
+ ....+.+++.+|++++|+|++...+.++.. +...+.. .++|+++|+||+|+.+..+ ..+ .+.+.+.
T Consensus 251 ~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 251 KYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY 324 (439)
T ss_dssp CSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc
Confidence 1 112356788899999999999876655533 4444443 3689999999999975432 122 2223332
Q ss_pred h---cCceeeecccccCHHHHHHHHHHhc
Q 011645 420 K---IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 ~---~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. ..+.++|+.++.|++++++.+....
T Consensus 325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 325 FIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 2456899999999999999987654
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=1.3e-16 Score=148.21 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=98.1
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceecc--CCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD--GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~--~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
...+|+|+|.+|||||||+++|++..... +..+.+.....+. ... .-...+.+|||||..... .+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~----~~~ 86 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISN-----SSFVNFQIWDFPGQMDFF----DPT 86 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECC-----TTSCCEEEEECCSSCCTT----CTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccC-----CCeeEEEEEECCCCHHHH----hhh
Confidence 45789999999999999999998753321 1111111111111 000 001378999999974421 111
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-------HHHHHHHHHh-
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK- 420 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-------~~~l~~~l~~- 420 (480)
.....++..+|++|+|+|+++. ..+.+..+...+........+.|+++|+||+|+...... .....+.+..
T Consensus 87 ~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 87 FDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp CCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 0004567789999999999986 344444444444432111246899999999998764221 1111222322
Q ss_pred ----c--CceeeecccccCHHHHHHHHHHhc
Q 011645 421 ----I--GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 ----~--g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
. .+.++|+++ .|++++++.+...+
T Consensus 166 ~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 GLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2 345899999 99999999987653
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=1.4e-17 Score=175.91 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=99.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc-cCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-~~gl~~ 349 (480)
.++|+|+|.||||||||+|+|++.+.. +.++|++|.+...+.+.... ..+.+|||||+...... .+.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--------SCCEEECCCC------CCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--------ceEEEEECCCCCCcchHHHHHHHH
Confidence 468999999999999999999988765 58899999998888776543 37999999998642211 223444
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhcC---ceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~ 426 (480)
.+..+++.||++|+|+|+.......+. .+.+.|.. .++|+++|+||+|+....+. + ..+..++ ..++
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~---~-~e~~~lg~~~~~~i 164 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---I-YDFYSLGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC-------------CCSGGGSSSSEEEC
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhh---H-HHHHHcCCCceEEe
Confidence 556678899999999999876555443 34444543 46999999999998753221 1 1122333 2478
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+.++.|+.++++.+....
T Consensus 165 SA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTG
T ss_pred ecccccchHHHHHHHHhhc
Confidence 9999999999999997655
No 130
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=150.17 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=105.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++... ...+..|+.+.....+..+. . ...+.+|||||..+.. .+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~----~~---- 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDH----Q--PVHLRVMDTADLDTPR----NC---- 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT----E--EEEEEEEECCC---CC----CT----
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECC----E--EEEEEEEECCCCCcch----hH----
Confidence 36899999999999999999997653 23444444322211221111 0 1268899999985431 12
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCC-CCCCCCEEEEEeCCCCcChH----HHHHHHHHHHHhcCceee
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 426 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kp~ivV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~ 426 (480)
.+++..+|++++|+|+++..+++....|+.++..+.. .....|+++|+||+|+.... +....+.+.+ ...+.++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 164 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLFFEV 164 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcEEEE
Confidence 3466789999999999987777777777777776421 01368999999999996432 2223333222 2356688
Q ss_pred ec-ccccCHHHHHHHHHHhc
Q 011645 427 TS-ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa-~t~~Gi~~ll~~Ls~~~ 445 (480)
|+ .++.|++++++.+....
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHH
Confidence 99 89999999999987654
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=9.1e-18 Score=158.68 Aligned_cols=157 Identities=12% Similarity=0.073 Sum_probs=113.0
Q ss_pred cceEEEecCCCCChHHHHHHHh-cCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAIT-HAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt-~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
..+|+|+|.+|||||||+++|+ +... ...+.+++|.......+.... ..+.+|||||.... ..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~ 79 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP--------IKFNVWDTAGQEKF-------GG 79 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEE--------EEEEEEEECSGGGT-------SC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE--------EEEEEEeCCChHHH-------hH
Confidence 4689999999999999999954 3322 335666777666555543221 26899999997432 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH--HHHHHHHHHHhcCceeee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDKVT 427 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e--~~~~l~~~l~~~g~~~~s 427 (480)
.+..++..+|++++|+|+++..+++....|..++..+. .+.|+++|+||+|+..... ....+... ....+.++|
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S 155 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDIS 155 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCGGGCCHHHH-HTCEEEECB
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccHHHHHHHHH-cCCEEEEEe
Confidence 23455678999999999998877888888888888764 3689999999999975321 11111111 234567899
Q ss_pred cccccCHHHHHHHHHHhcCc
Q 011645 428 SETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~~~ 447 (480)
++++.|+++++++|...+..
T Consensus 156 a~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877643
No 132
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.68 E-value=1e-16 Score=146.32 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=100.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc----cC--
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GK-- 345 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~----~~-- 345 (480)
+++|+++|.+|||||||+++|++........|++|.......+ ..+.+|||||+...... .+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~ 68 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERI 68 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------------CCEEEEECCCccccccCCHHHHHHH
Confidence 3689999999999999999999887766777777765543332 16899999996432110 01
Q ss_pred -ccchhhhhh-hccCCEEEEecccCCCCChhhH-HHHH------------HHHHhhCCCCCCCCEEEEEeCCCCcChH-H
Q 011645 346 -GLGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RTVK------------EELRMYNPDYLERPFIVVLNKIDLPEAR-D 409 (480)
Q Consensus 346 -gl~~~fl~~-i~~ad~ll~VvD~s~~~~~~~~-~~l~------------~eL~~~~~~l~~kp~ivV~NK~Dl~~~~-e 409 (480)
.+...+++. ...++++++|+|.+. .+.. ..|. ..+.. .+.|+++|+||+|+.... +
T Consensus 69 ~~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~ 140 (190)
T 2cxx_A 69 KDEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNVQE 140 (190)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCHHH
T ss_pred HHHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcHHH
Confidence 112223333 555677777777653 2222 1121 22222 368999999999998753 3
Q ss_pred HHHHHHHHHHh------cCceeeecccccCHHHHHHHHHHhc
Q 011645 410 RLQSLTEEILK------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 410 ~~~~l~~~l~~------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.+.+.+.. ..+.++|++++.|++++++++....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 141 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 34444443322 1246899999999999999998665
No 133
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=5.7e-17 Score=154.49 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=103.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+|||.+|||||||+|+|++....+ ..++.++.+.....+..+.. ...+.+|||+|.... ...+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~------~~~l~~~Dt~g~~~~---~~~l-- 104 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE------SATIILLDMWENKGE---NEWL-- 104 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE------EEEEEEECCTTTTHH---HHHH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCe------eeEEEEeecCCCcch---hhhH--
Confidence 34789999999999999999999765443 34443333222222222210 125789999996321 0011
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH----HHHHHHHHHHhcCcee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDK 425 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~ 425 (480)
...++..+|++++|+|+++..+++....|..++.... ...+.|+++|+||+|+...++ ..+.+... ....+.+
T Consensus 105 -~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~-~~~~~~e 181 (211)
T 2g3y_A 105 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-FDCKFIE 181 (211)
T ss_dssp -HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEE
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH-cCCEEEE
Confidence 1123466899999999998877777777777776432 113689999999999974321 11122111 2234678
Q ss_pred eecccccCHHHHHHHHHHhc
Q 011645 426 VTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+||++++|+++++++|....
T Consensus 182 ~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 134
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=162.87 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=105.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
...+|+|+|.+|||||||+++|++... +..+| |+......+.... ..+.||||||... +...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~--------~~l~i~Dt~G~~~-------~~~~ 225 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPL 225 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT--------EEEEEEECC------------CCS
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc--------EEEEEEECCCCHh-------HHHH
Confidence 345899999999999999999987653 22222 4433333443321 2789999999643 2233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc-------Cc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC 423 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~-------g~ 423 (480)
+..++..+|++|+|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++...+... .+
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEE
Confidence 4556788999999999999888877766655554321 224689999999999986432 23344433322 25
Q ss_pred eeeecccccCHHHHHHHHHHhc
Q 011645 424 DKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.++|++++.|+++++++|...+
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 6889999999999999998765
No 135
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=3.5e-18 Score=159.37 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=105.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
+...+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.+|||||+.+. ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DR 93 (204)
Confidence 4567899999999999999999986543 23344444333322222221 1125779999998543 22
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH-------------HHHH
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLT 415 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~-------------~~l~ 415 (480)
.+..++..+|++++|+|++++.+++... .|..++..+. .+.|+++|+||+|+....+.. +...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 2334567899999999999887777765 5666666543 268999999999997542111 1111
Q ss_pred HHHHhc---CceeeecccccCHHHHHHHHHHh
Q 011645 416 EEILKI---GCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 416 ~~l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
+..... .+.++|++++.|++++++++...
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 112222 45689999999999999987643
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.67 E-value=1.1e-16 Score=148.85 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=103.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+|+|+|.||||||||+|+|++....+ ..++.++.+.....+..+.. ...+.+|||+|.... ...+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~Dt~~~~~~---~~~~~-- 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE------SATIILLDMWENKGE---NEWLH-- 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTE------EEEEEEECCCCC-------CTTG--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCe------EEEEEEEEeccCcch---hhhHH--
Confidence 4689999999999999999999754433 34444333322222222210 125688999996431 11122
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cCceeee
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 427 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~s 427 (480)
..++..+|++++|+|+++..+++....|+.++..... ..+.|+++|+||+|+...... .++....... ..+.++|
T Consensus 75 -~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S 152 (192)
T 2cjw_A 75 -DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS 152 (192)
T ss_dssp -GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred -HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEec
Confidence 2234568999999999988777777777777765431 136899999999998643211 1111111122 3456899
Q ss_pred cccccCHHHHHHHHHHhc
Q 011645 428 SETELSSEDAVKSLSTEG 445 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~~~ 445 (480)
|+++.|++++++++....
T Consensus 153 A~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 153 AAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.67 E-value=7.4e-17 Score=158.63 Aligned_cols=157 Identities=22% Similarity=0.340 Sum_probs=110.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--cCccch
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR 349 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~--~~gl~~ 349 (480)
..+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.+|||||+.+.... .+.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--------KEFLVVDLPGIYSLTAHSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--------EEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--------ceEEEEeCCCccccccCCHHHHHHH
Confidence 46899999999999999999999887778899999888777765442 36899999998653221 111222
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~ 426 (480)
.++. ...+|++++|+|+++. +....+..++... ...|+++|+||+|+..... ....+.+.+ ...+.++
T Consensus 75 ~~~~-~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~ 145 (271)
T 3k53_A 75 NFIL-DGNADVIVDIVDSTCL---MRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPT 145 (271)
T ss_dssp HHHH-TTCCSEEEEEEEGGGH---HHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEEC
T ss_pred Hhhh-ccCCcEEEEEecCCcc---hhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEE
Confidence 2221 2679999999999874 2222333344432 1289999999999864321 133343333 3566789
Q ss_pred ecccccCHHHHHHHHHHhc
Q 011645 427 TSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.++.|++++++.+....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 9999999999999998664
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.66 E-value=4.5e-17 Score=170.97 Aligned_cols=159 Identities=26% Similarity=0.277 Sum_probs=110.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
...+|+|+|.+|+|||||+|+|++.... +.++++||.++....+..... ..+.+|||||+.+..........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence 4568999999999999999999988764 478999999888777765431 27899999999875443333344
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHH---hcCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~ 426 (480)
.+...+..+|++|+|+|++ ..+....+..++..+ +.|+++|+||+|+...... +..+.+. ...+.++
T Consensus 106 ~~~~~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSA---PTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHTSCSEEEEECSSS---CCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 4667788999999999992 234445677777763 6899999999999865432 2222222 2356789
Q ss_pred ecccccCHHHHHHHHHHhcC
Q 011645 427 TSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
|++++.|+++++++|.....
T Consensus 176 SAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHhhh
Confidence 99999999999999998773
No 139
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.66 E-value=1.8e-16 Score=158.05 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=111.5
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCcc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl 347 (480)
.++...+|+++|.+|||||||++++++... ...+..|+.+.....+..+.. ...+.+|||||+.+.
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~------- 216 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY------- 216 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTE------EEEEEEEEECCCGGG-------
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCE------EEEEEEEeCCCchhh-------
Confidence 345668999999999999999999997643 344555655444333332211 125679999998543
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHH-------------H
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------S 413 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~-------------~ 413 (480)
...+..++..+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+.......+ .
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 223345677899999999999877666665 56677776543 689999999999975432111 1
Q ss_pred HHHHHHhc---CceeeecccccCHHHHHHHHHHhc
Q 011645 414 LTEEILKI---GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 414 l~~~l~~~---g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+..... .+.++|++++.|++++++.+....
T Consensus 294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 22222333 456889999999999999987654
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.65 E-value=2.5e-16 Score=153.19 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=105.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCC-Cc-eeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc---
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY-PF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--- 346 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~-pf-TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g--- 346 (480)
..+|+|+|.+|||||||+|+|++....+..+ +. +|.....+.+.... ..+.||||||+.+.......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~iiDTpG~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--------REIVIIDTPDMFSWKDHCEALYK 93 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--------EEEEEEECCGGGGSSCCCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--------CEEEEEECcCCCCCCCCHHHHHH
Confidence 4689999999999999999999887655333 33 56655555544332 37999999999875432221
Q ss_pred -cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEe-CCCCcChHHHHH--------HHHH
Q 011645 347 -LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEARDRLQ--------SLTE 416 (480)
Q Consensus 347 -l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~N-K~Dl~~~~e~~~--------~l~~ 416 (480)
+...+..++..+|++|+|+|++. .. .....++..+..+.......|.++|+| |+|+.... ... .+.+
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~-~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGR-YT-SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTC-CC-HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCC-CC-HHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHH
Confidence 12233346788999999999985 22 222334444544321112467777777 99997531 111 1222
Q ss_pred HHHhcC-----c--eeeecccccCHHHHHHHHHHhcCc
Q 011645 417 EILKIG-----C--DKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 417 ~l~~~g-----~--~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
.+..++ + .++|++++.|++++++.+......
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 333332 2 467889999999999999876543
No 141
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.64 E-value=3.7e-16 Score=168.26 Aligned_cols=160 Identities=20% Similarity=0.232 Sum_probs=107.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
..++|+|+|.||||||||+|+|++.+ +.++.+.+++..++.+.+..... .-...+.+|||||....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~---- 111 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIM---- 111 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTT----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHH----
Confidence 34789999999999999999999876 33344445555556555554321 01237999999996432
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhcC-
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG- 422 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~g- 422 (480)
..+... .++.+|++|+|+|++.. +....|..++..+.+ +.|+++|+||+|+....+ ..+.+.+.+...+
T Consensus 112 ~~~~~~---~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 112 HASHQF---FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIEN 182 (535)
T ss_dssp TTTCHH---HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT
T ss_pred HHHHHH---HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcCC
Confidence 223333 35569999999999864 667778889988763 589999999999976432 2344445555554
Q ss_pred -ceeeecccccCHHHHHHHHHHhcCc
Q 011645 423 -CDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 423 -~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+.++|++++.|++++++.+......
T Consensus 183 ~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 183 RFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CEEECCC-----CTTHHHHHHHHHTC
T ss_pred ceEEEecCcccCHHHHHHHHHHHHhc
Confidence 6789999999999999999877644
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.64 E-value=3.2e-15 Score=155.50 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=109.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-ccCCCceeeecccee-----ccCCCCCCc------cccCCceEEecCCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGR-----LDGDPTLGA------EKYSSEATLADLPGLI 338 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTTl~p~~g~-----v~~~~~~~~------~~~~~~~~l~DTPGli 338 (480)
...+|+++|.+|+|||||+|+|++.... ...++.+|....... +........ ......+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 3468999999999999999999986432 233444443211100 000000000 0001468999999973
Q ss_pred ccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHH
Q 011645 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT 415 (480)
Q Consensus 339 e~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~ 415 (480)
+ +...+...+..+|++++|+|++...+..+...++..+..+. .+|+++|+||+|+.+..+ ..+++.
T Consensus 87 ~-------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 87 V-------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp G-------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHHHHHHHHHHH
Confidence 3 45566778889999999999998765555555656666543 368999999999987543 233344
Q ss_pred HHHH-----hcCceeeecccccCHHHHHHHHHHhcC
Q 011645 416 EEIL-----KIGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 416 ~~l~-----~~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+.+. ...+.++|+.++.|++++++.|.....
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 4443 234678999999999999999987653
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.63 E-value=8.2e-16 Score=141.31 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=98.0
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-ccCCCcee-eeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
.+|+|+|.+|||||||+++|++.... ...+..|+ .+.....+..... . .-...+.+|||||+.+... +
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~-~--~~~~~~~i~Dt~G~~~~~~----~--- 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK-R--KRDLVLNVWDFAGREEFYS----T--- 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC------------CEEEEEEECSHHHHHT----T---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC-C--CCceEEEEEecCCCHHHHH----h---
Confidence 58999999999999999999986322 22222221 2211111111000 0 0012689999999854311 2
Q ss_pred hhhhhccCCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHH---HHHHHHHH-hcC---
Q 011645 351 FLRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL-KIG--- 422 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~---~~l~~~l~-~~g--- 422 (480)
...++..++++++|+|++++ .+++.+..|..++..+. .+.|+++|+||+|+....... ....+.+. ..+
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 2zej_A 73 HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149 (184)
T ss_dssp SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence 22345678999999999986 34666677777776543 368999999999998654322 12222222 223
Q ss_pred ---ceeeeccccc-CHHHHHHHHHHhc
Q 011645 423 ---CDKVTSETEL-SSEDAVKSLSTEG 445 (480)
Q Consensus 423 ---~~~~sa~t~~-Gi~~ll~~Ls~~~ 445 (480)
+.++|++++. +++++++.+....
T Consensus 150 ~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 150 IRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred hhheEEEecccCchhHHHHHHHHHHHH
Confidence 5678999996 9999999887655
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=1.7e-15 Score=149.27 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=86.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCC------ceeeeccce--eccCCCCCCccccCCceEEecCCccccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p------fTTl~p~~g--~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
++|+|+|.+|||||||+|+|++.+.....++ .+|...... .+..+. ..-.+.||||||+.+.....
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~liDTpG~~d~~~~~ 82 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG------VQLLLTIVDTPGFGDAVDNS 82 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--------CCEEEEEEECCCCSCCSCCT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCC------eEEEEEEEECCCccccccch
Confidence 5799999999999999999998887666653 333333222 222211 11278999999985432211
Q ss_pred Cccc-------hhhhhhh-------------ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 345 KGLG-------RNFLRHL-------------RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 345 ~gl~-------~~fl~~i-------------~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
..+. ..|..++ .++|+++|++|.+..........+..++.. .+|+++|+||+|+
T Consensus 83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADT 156 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGG
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCC
Confidence 1111 1112222 247899999987763332332334444542 6899999999999
Q ss_pred cChHHH---HHHHHHHHHhc--CceeeecccccCHHHHHHHHHHhc
Q 011645 405 PEARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 405 ~~~~e~---~~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
....+. .+.+.+.+... .+..+++.+++++++++++|.+..
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 865432 23344555444 445678999999999999998765
No 145
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=161.77 Aligned_cols=119 Identities=33% Similarity=0.597 Sum_probs=73.5
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCC---------ccccCCceEEecCCccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------AEKYSSEATLADLPGLI 338 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---------~~~~~~~~~l~DTPGli 338 (480)
.++...+|+|||.||||||||+|+|++.+..++++||||++|+.|.+......- .......+.+|||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 455667899999999999999999999988789999999999999887542100 00011358999999999
Q ss_pred ccccccCccchhhhhhhccCCEEEEecccCCC----------CChhhHHHHHHHHHhh
Q 011645 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMY 386 (480)
Q Consensus 339 e~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~----------~~~~~~~~l~~eL~~~ 386 (480)
++++.+++++..|+.+++.||++++|+|+++. +|.++++.+..||..+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~ 155 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLK 155 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhh
Confidence 99988899999999999999999999999752 6677888888887654
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.61 E-value=2e-16 Score=156.23 Aligned_cols=169 Identities=19% Similarity=0.236 Sum_probs=101.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC------ccCCCc----------------------eeeeccceec-------c
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGRL-------D 315 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~------ia~~pf----------------------TTl~p~~g~v-------~ 315 (480)
..++|+|+|.||||||||+|+|++.+.. ++..|. ||.+.....+ .
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999988753 244453 3332111000 0
Q ss_pred CC--CCCC-c------cccCCceEEecCCccccccc--ccC----ccchhhhhhhccCCEEE-EecccCCCCChhhHHHH
Q 011645 316 GD--PTLG-A------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV 379 (480)
Q Consensus 316 ~~--~~~~-~------~~~~~~~~l~DTPGlie~a~--~~~----gl~~~fl~~i~~ad~ll-~VvD~s~~~~~~~~~~l 379 (480)
.. .... . ......+++|||||+.+... ..+ .+...+..++..++.++ +|+|++......+...+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00 0000 0 00013799999999975321 011 23344556777787665 79999875443443334
Q ss_pred HHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc-----CceeeecccccCHHHHHHHHHHh
Q 011645 380 KEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI-----GCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 380 ~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~-----g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..++.. .+.|+++|+||+|+....+ ..+.+...+..+ .+.++|+.++.|++++++.+...
T Consensus 185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHCT-----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhCC-----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 444432 3689999999999975432 122222211111 24578999999999999998764
No 147
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.5e-15 Score=143.25 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=106.2
Q ss_pred ecceEEEecCC---------CCChHHHHHHHhcCC--CCccCCCcee--eeccceeccCCCC--------CCccccCCce
Q 011645 271 VVADVGLVGLP---------NAGKSTLLAAITHAK--PDIADYPFTT--LMPNLGRLDGDPT--------LGAEKYSSEA 329 (480)
Q Consensus 271 ~~~~V~lvG~p---------NaGKSSLlnaLt~~~--~~ia~~pfTT--l~p~~g~v~~~~~--------~~~~~~~~~~ 329 (480)
...+|+|+|.+ |||||||+|+|++.+ ..+.++..|| .+.....+..+.. .........+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 44789999999 999999999999852 2334444454 3333222221100 0000011257
Q ss_pred EEec------CCccccccc--------------------------ccCccchhhhhhhc-----cCCEEEEecccCCC--
Q 011645 330 TLAD------LPGLIEGAH--------------------------LGKGLGRNFLRHLR-----RTRLLVHVIDAAAE-- 370 (480)
Q Consensus 330 ~l~D------TPGlie~a~--------------------------~~~gl~~~fl~~i~-----~ad~ll~VvD~s~~-- 370 (480)
.||| |||...... +..++...|.++.. .||++|+|+|++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 8887 554432111 11122233333332 69999999999997
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHh---cCceeeecccccCHHHHHHHHHHhc
Q 011645 371 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 371 ~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+++.+..|+.++..+.. ..+.|+++|+||+|+..... .++..+.... ..+.++|++++.|+++++++|....
T Consensus 178 ~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 888888888887765410 13589999999999976543 2444443333 3466899999999999999987653
No 148
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.60 E-value=3.4e-15 Score=138.88 Aligned_cols=159 Identities=20% Similarity=0.117 Sum_probs=106.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~f 351 (480)
..+|+|+|.+|||||||+++|++........|..+.++..+.+..+.. .-.+.+|||||.... ..+ .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~~---~ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGQERY----RRI---T 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE------EEEEEEEECSSGGGT----TCC---C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCchhh----hhh---h
Confidence 468999999999999999999987655444444444555555543321 125788999997542 112 2
Q ss_pred hhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHhc--Cceeeec
Q 011645 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 428 (480)
Q Consensus 352 l~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa 428 (480)
...+..++++++|+|++...+++....|..++..+.. ...|+++|+||+|+..... ..+......... .+.++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sa 149 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeC
Confidence 3345678999999999876666666666666665431 3589999999999975321 112222233333 3557899
Q ss_pred ccccCHHHHHHHHHHhc
Q 011645 429 ETELSSEDAVKSLSTEG 445 (480)
Q Consensus 429 ~t~~Gi~~ll~~Ls~~~ 445 (480)
.++.+++++++.|....
T Consensus 150 l~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTEI 166 (199)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.58 E-value=8.2e-15 Score=156.19 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=102.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-------CccCCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-------~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
-.+|+++|.+|+|||||+++|++... .....+++|++.....+..+. ..+++|||||+.+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------~~i~iiDtPGh~~----- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--------YRITLVDAPGHAD----- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--------EEEEECCCSSHHH-----
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--------EEEEEEECCChHH-----
Confidence 46899999999999999999998761 223455677766555544321 3799999999843
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHh-
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK- 420 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~- 420 (480)
+...+...+..+|++|+|+|+++....+..+.+ ..+.. .+.|+++|+||+|+..... ..+++.+.+..
T Consensus 86 --~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 86 --LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp --HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-HHHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 344566778899999999999876444444433 33443 3588899999999986422 23344444443
Q ss_pred -----cCceeeecccccCHHHHHHHHHHhc
Q 011645 421 -----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 421 -----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+.++|+.+++|+++++++|....
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 3456889999999999999998754
No 150
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=2.6e-15 Score=149.69 Aligned_cols=171 Identities=22% Similarity=0.291 Sum_probs=97.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-----Cc-cCCC---ceeeecc---------ceeccCCCCC------------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-----DI-ADYP---FTTLMPN---------LGRLDGDPTL------------ 320 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-----~i-a~~p---fTTl~p~---------~g~v~~~~~~------------ 320 (480)
..++|+|+|.+|||||||+|+|++.+. .+ +..| .+|..+. .+.+...+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457899999999999999999998865 22 3344 2333211 0000000000
Q ss_pred ------------C----------ccccCCceEEecCCccccccc------ccCccchhhhhhhccCCEEEEecccCCCCC
Q 011645 321 ------------G----------AEKYSSEATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAENP 372 (480)
Q Consensus 321 ------------~----------~~~~~~~~~l~DTPGlie~a~------~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~ 372 (480)
. ......++++|||||+.+.+. ..+.+...+..++..+|++++|+|++....
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 000113799999999975321 112244556778899999999999854332
Q ss_pred h-hhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceee---eccc---ccCHHHHHHHHH
Q 011645 373 V-NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV---TSET---ELSSEDAVKSLS 442 (480)
Q Consensus 373 ~-~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~---sa~t---~~Gi~~ll~~Ls 442 (480)
. .+...+...+.. .++|+++|+||+|+....+ ..+.+...+.. .++.++ ++.+ +.|+.++++.+.
T Consensus 183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2 232234444432 4689999999999975433 22222221122 333333 4444 788999999877
Q ss_pred HhcC
Q 011645 443 TEGG 446 (480)
Q Consensus 443 ~~~~ 446 (480)
..+.
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.58 E-value=8.4e-15 Score=154.31 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=98.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------------CCCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+|+|||||+++|+.....+. ..+++|++.....+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4557899999999999999999965432221 114566666555554432
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCCh------hhHHHHHHHHHhhCCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~ 392 (480)
..++||||||+.+ +.......+..||++|+|||++..... .+.......+.. .+
T Consensus 95 --------~~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-----~~ 154 (439)
T 3j2k_7 95 --------KHFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----AG 154 (439)
T ss_pred --------eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-----cC
Confidence 3799999999854 344556777889999999999975421 122222222332 34
Q ss_pred CC-EEEEEeCCCCcCh---HHHH----HHHHHHHHhcC--------ceeeecccccCHHHHHH
Q 011645 393 RP-FIVVLNKIDLPEA---RDRL----QSLTEEILKIG--------CDKVTSETELSSEDAVK 439 (480)
Q Consensus 393 kp-~ivV~NK~Dl~~~---~e~~----~~l~~~l~~~g--------~~~~sa~t~~Gi~~ll~ 439 (480)
.| +++|+||+|+... ++.. +++.+.+..++ +.++|+.++.|+.++.+
T Consensus 155 v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 155 VKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 66 9999999999642 2222 33333443333 56789999999998543
No 152
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.58 E-value=6.9e-15 Score=136.43 Aligned_cols=160 Identities=20% Similarity=0.141 Sum_probs=108.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+|+|.+|||||||+++|++........|..+.+...+.+..+.. .-.+.+|||||+... ..+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~~-- 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGLERY----RAI-- 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE------EEEEEEEEECSCCSS----SCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEECCCCcch----hhh--
Confidence 44579999999999999999999987765544555555555565544321 114667999998542 112
Q ss_pred hhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-HHHHHHHHHHh--cCceee
Q 011645 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 426 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~ 426 (480)
+...+..++.+++|+|.++..+++....|..++..+.. ...|+++|+||+|+..... ..+........ +.+.++
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~ 171 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIET 171 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 23445678999999999876556666666666655432 3579999999999875311 11222222333 335578
Q ss_pred ecccccCHHHHHHHHHHh
Q 011645 427 TSETELSSEDAVKSLSTE 444 (480)
Q Consensus 427 sa~t~~Gi~~ll~~Ls~~ 444 (480)
++.++.+++++++.|...
T Consensus 172 Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999998754
No 153
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=7.2e-15 Score=143.80 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=85.5
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-.+|+|+|.+|||||||+|+|++.+. .+.+++++|.......+..+. ..+.||||||+.+..... ..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~liDTpG~~~~~~~~----~~ 103 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--------FTINIIDTPGLVEAGYVN----HQ 103 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--------EEEEEEECCCSEETTEEC----HH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--------eeEEEEECCCCCCcccch----HH
Confidence 46899999999999999999998876 457888888877766655432 379999999998754332 23
Q ss_pred hhhhhc------cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 351 FLRHLR------RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 351 fl~~i~------~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+++.+. .+|+++||+|++.....+....+.+.+.........+|+++|+||+|+.
T Consensus 104 ~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 104 ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 333333 7899999988765443223334556665432211235999999999985
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.56 E-value=4.3e-15 Score=160.01 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=84.2
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCCCc----------------cC------CCceeeeccceeccCCCCCCcccc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKY 325 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~------~pfTTl~p~~g~v~~~~~~~~~~~ 325 (480)
++....+|+|+|.+|||||||+++|+.....+ .+ .+++|.......+.+..
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------- 81 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------- 81 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-------
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-------
Confidence 45567789999999999999999997332211 11 13344444444443321
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
..+.||||||+.+ +...+.+++..+|++|+|+|++.....+.... +..+.. .+.|+++|+||+|+.
T Consensus 82 -~~i~liDTPG~~d-------f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~~~~-----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 82 -YLINLLDTPGHAD-------FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEVCRL-----RHTPIMTFINKMDRD 147 (528)
T ss_dssp -EEEEEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHHHHT-----TTCCEEEEEECTTSC
T ss_pred -EEEEEEECCCchh-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEeCCCCc
Confidence 3789999999854 34557788899999999999998766666554 445554 358999999999997
Q ss_pred Ch
Q 011645 406 EA 407 (480)
Q Consensus 406 ~~ 407 (480)
..
T Consensus 148 ~~ 149 (528)
T 3tr5_A 148 TR 149 (528)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.56 E-value=8.5e-16 Score=165.58 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=110.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..++|+++|.+|+|||||+++|++........+++|.+.....+.... ...++||||||+.. +...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~-------f~~~ 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAA-------FSAM 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCC-------TTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHH-------HHHH
Confidence 356899999999999999999998776666778888877766665421 13689999999743 3333
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHHH---HH----hc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---IL----KI 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~~---l~----~~ 421 (480)
..+.+..+|++++|+|+++....+..+.+ ..+.. .+.|+++|+||+|+.... .....+.+. .. ..
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 45567789999999999987666555544 33443 368999999999997531 111111111 01 12
Q ss_pred CceeeecccccCHHHHHHHHHHhc
Q 011645 422 GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.++|+.++.|++++++.+....
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCchhHHHHHHHhh
Confidence 355789999999999999998654
No 156
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=1e-14 Score=136.93 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=76.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
..++|+|+|.+|||||||+++|++..... ..+..++ +.. +. ...+.+|||||+.+.. .+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~-~~--------~~~~~l~Dt~G~~~~~----~~~ 72 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AAD-YD--------GSGVTLVDFPGHVKLR----YKL 72 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETT-GG--------GSSCEEEECCCCGGGT----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEE-ee--------CceEEEEECCCcHHHH----HHH
Confidence 34689999999999999999999876432 1222221 111 01 1378999999985431 111
Q ss_pred hhhhh-hhccCCEEEEecccC-CCCChhhHHHHHHHHHhhCC--CCCCCCEEEEEeCCCCcCh
Q 011645 349 RNFLR-HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 349 ~~fl~-~i~~ad~ll~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~kp~ivV~NK~Dl~~~ 407 (480)
..+++ .+..+|++++|+|++ +..+++....++.++..... .....|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 22222 233489999999999 66666666555555543210 1136899999999999764
No 157
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=1.6e-14 Score=160.41 Aligned_cols=168 Identities=20% Similarity=0.159 Sum_probs=108.7
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCc-cCCCce--------------eeecccee-------------ccCCC--
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFT--------------TLMPNLGR-------------LDGDP-- 318 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfT--------------Tl~p~~g~-------------v~~~~-- 318 (480)
.+...+|+|+|.+|||||||+|+|++.+..+ +..|.| |++...+. +....
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3466799999999999999999999987654 556666 22110000 00000
Q ss_pred -----------CCC--------ccc-cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHH
Q 011645 319 -----------TLG--------AEK-YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 378 (480)
Q Consensus 319 -----------~~~--------~~~-~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~ 378 (480)
... +.. ....+.||||||+.+... ....+..++..||++|||+|++.+.+..+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 000 000 003689999999976421 23455678889999999999998777776665
Q ss_pred HHHHHHhhCCCCCCCCEEEEEeCCCCcChH----H---HHH----HHH----HHHHh-----------cCceeeecc---
Q 011645 379 VKEELRMYNPDYLERPFIVVLNKIDLPEAR----D---RLQ----SLT----EEILK-----------IGCDKVTSE--- 429 (480)
Q Consensus 379 l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~----e---~~~----~l~----~~l~~-----------~g~~~~sa~--- 429 (480)
|.+.+.. ...|+++|+||+|+.... + .++ .+. ..+.. ..+.++|+.
T Consensus 222 l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 222 LENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred HHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 5544432 257899999999986432 0 111 121 22221 245688999
Q ss_pred -----------cccCHHHHHHHHHHhc
Q 011645 430 -----------TELSSEDAVKSLSTEG 445 (480)
Q Consensus 430 -----------t~~Gi~~ll~~Ls~~~ 445 (480)
++.|++++++.+....
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999887654
No 158
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.55 E-value=2.2e-14 Score=149.51 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=105.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceeccCC-----------CCCC--cccc--CCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGD-----------PTLG--AEKY--SSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~~~-----------~~~~--~~~~--~~~~~l 331 (480)
+...+|+++|.+|+|||||+++|++..... ...+++|++......... .... ...+ ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 345689999999999999999999653221 122444543322111100 0000 0000 136899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH-
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD- 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e- 409 (480)
|||||+.+ +...+.+.+..+|++|+|||+++.. ..+..+.+ ..+..+. ..|+++|+||+|+....+
T Consensus 88 iDtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 88 IDAPGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----CCCEEEEEECGGGSCHHHH
T ss_pred EECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----CCcEEEEEECccCCCHHHH
Confidence 99999844 3345567778899999999999764 23333333 3344332 368999999999987542
Q ss_pred --HHHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhcC
Q 011645 410 --RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 410 --~~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
..+++.+.+.. ..+.++|+.++.|+++++++|.....
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 34445555442 35678899999999999999987653
No 159
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=1.3e-14 Score=142.45 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=83.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
-.+|+++|.+|+|||||+|+|++... .+.+++.+|..+....+.... ..+.||||||+.+...........
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~iiDTpG~~~~~~~~~~~~~~ 110 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--------FTLNIIDTPGLIEGGYINDMALNI 110 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--------eEEEEEECCCCCCCccchHHHHHH
Confidence 46899999999999999999998875 347778888766554443321 369999999997653222211111
Q ss_pred hhhh--hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 351 FLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 351 fl~~--i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
+.++ ...+|++|||+|++..........+..++......-..+|+++|+||+|+...
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 1122 24799999998876532222223455556543111112699999999998753
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.54 E-value=1.7e-14 Score=153.56 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=94.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-------------------------------cCCCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+|+|||||+++|+.....+ ...+++|.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 456799999999999999999997652221 112344544444444332
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCCh------hhHHHHHHHHHhhCCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~ 392 (480)
...+.||||||+.+ +...+...+..+|++|+|||++.+... .........+... ..
T Consensus 110 -------~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~ 171 (483)
T 3p26_A 110 -------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 171 (483)
T ss_dssp -------SCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred -------CceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence 23799999999944 455667788999999999999975322 1222222233321 23
Q ss_pred CCEEEEEeCCCCcCh-HHHHH----HHHHHHHhc-------CceeeecccccCHHH
Q 011645 393 RPFIVVLNKIDLPEA-RDRLQ----SLTEEILKI-------GCDKVTSETELSSED 436 (480)
Q Consensus 393 kp~ivV~NK~Dl~~~-~e~~~----~l~~~l~~~-------g~~~~sa~t~~Gi~~ 436 (480)
+|+|+|+||+|+... ++..+ .+.+.+..+ .+.++|+.++.|+.+
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 579999999999863 22233 333334333 346889999999874
No 161
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=3.3e-14 Score=148.13 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=98.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc---cCCCceeeeccceeccC-----------CCCCC--cccc--CCceEEe
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA 332 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a~~pfTTl~p~~g~v~~-----------~~~~~--~~~~--~~~~~l~ 332 (480)
...+|+++|.+++|||||+++|++..... ...+++|++........ ..... ...+ ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34689999999999999999999654321 12244455332211100 00000 0000 1368999
Q ss_pred cCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---
Q 011645 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--- 408 (480)
Q Consensus 333 DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--- 408 (480)
||||+.+ +...+.+.+..+|++|+|+|++++. ..+..+.+ ..+..+ ..+|+++|+||+|+....
T Consensus 87 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l----~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 87 DSPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEIL----GIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp ECSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHT----TCCCEEEEEECTTSSCTTTTT
T ss_pred ECCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHc----CCCeEEEEEEccCCCCHHHHH
Confidence 9999843 3345566677899999999999764 23333333 334432 236899999999997643
Q ss_pred HHHHHHHHHHHh-----cCceeeecccccCHHHHHHHHHHhcC
Q 011645 409 DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 409 e~~~~l~~~l~~-----~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+..+++.+.+.. ..+.++|+.+++|+++++++|.....
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 344555555543 35678999999999999999987653
No 162
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=132.75 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=74.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccch
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~ 349 (480)
....+|+++|.+|||||||+++|++...... .++..+.... .+. ...+.+|||||+..... .+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~~---~~~~ 110 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLRY---KLSD 110 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSSC---CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eec--------CCeEEEEECCCCchHHH---HHHH
Confidence 4557899999999999999999998764220 1111121111 111 13689999999865321 1222
Q ss_pred hhhhhhccCCEEEEecccC-CCCChhhHHHHHHHHHhhCC--CCCCCCEEEEEeCCCCcCh
Q 011645 350 NFLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 350 ~fl~~i~~ad~ll~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~kp~ivV~NK~Dl~~~ 407 (480)
.+...+..+|++++|+|++ +...++....++.++..... .....|+++|+||+|+...
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 2233445699999999998 54444444444444332210 1136899999999999754
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.53 E-value=4.3e-14 Score=154.15 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=103.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC---------------CCceeeeccceeccCCCCCCccccCCceEEecC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DT 334 (480)
+.+.+|+|+|.+++|||||+++|+.....+.. ..+.|+......+.+... ... ...+.+|||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~--~~~inliDT 80 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGN--TYKLHLIDT 80 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSC--EEEEEEECC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCC--eEEEEEEEC
Confidence 45678999999999999999999764222211 122333332222221100 000 126889999
Q ss_pred CcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHH
Q 011645 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL 414 (480)
Q Consensus 335 PGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l 414 (480)
||+.+. ...+.+.+..||++|+|||+++....+....|...+. .+.|+++|+||+|+..+. .+..
T Consensus 81 PGh~dF-------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v 145 (600)
T 2ywe_A 81 PGHVDF-------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRV 145 (600)
T ss_dssp CCSGGG-------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHH
T ss_pred CCcHhH-------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHH
Confidence 999653 4456677889999999999998877777666655443 368999999999998642 1122
Q ss_pred HHHH-HhcC-----ceeeecccccCHHHHHHHHHHhcC
Q 011645 415 TEEI-LKIG-----CDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 415 ~~~l-~~~g-----~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
.+.+ ..++ +.++|+.++.|++++++++.....
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2222 2233 568899999999999999987764
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-14 Score=157.81 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=99.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccC-------------------------------CCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-------------------------------~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+|+|||||+++|+.....+.. .+++|++.....+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55689999999999999999999977544422 14666666665555432
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC------ChhhHHHHHHHHHhhCCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~ 392 (480)
.+++||||||+.+ +...+...+..+|++|+|||++.+. ...+.......+.. +..
T Consensus 245 --------~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~----lgi 305 (611)
T 3izq_1 245 --------ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS----LGI 305 (611)
T ss_dssp --------CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT----TTC
T ss_pred --------ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH----cCC
Confidence 3799999999843 4556677788999999999998631 01122222222222 112
Q ss_pred CCEEEEEeCCCCcCh-HHH----HHHHHHHHHhc-------CceeeecccccCHHHH
Q 011645 393 RPFIVVLNKIDLPEA-RDR----LQSLTEEILKI-------GCDKVTSETELSSEDA 437 (480)
Q Consensus 393 kp~ivV~NK~Dl~~~-~e~----~~~l~~~l~~~-------g~~~~sa~t~~Gi~~l 437 (480)
.|+|+|+||+|+... ... .+.+...+..+ .+.++|+.++.|+.++
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 459999999999862 222 33333444433 3468899999999864
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.52 E-value=2e-14 Score=149.45 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=101.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC---CCC---ccC-----------CCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA---KPD---IAD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~---~~~---ia~-----------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
...+|+++|.+|+|||||+++|++. ... ... ..++|.+.....+... ...+.+||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiD 81 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVD 81 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEE
Confidence 4468999999999999999999873 110 000 1233433322222221 23799999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHH-
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~- 411 (480)
|||+.+ +.....+.+..+|++|+|+|+++....+. ..++..+.. .+.| +++|+||+|+....+.+
T Consensus 82 tpG~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~ 148 (405)
T 2c78_A 82 CPGHAD-------YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFMNKVDMVDDPELLD 148 (405)
T ss_dssp CCCSGG-------GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHH
T ss_pred CCChHH-------HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEEECccccCcHHHHH
Confidence 999854 34455677889999999999998765444 334445554 2577 88999999998533322
Q ss_pred ---HHHHHHHHhcC-------ceeeecccccC------------------HHHHHHHHHHhc
Q 011645 412 ---QSLTEEILKIG-------CDKVTSETELS------------------SEDAVKSLSTEG 445 (480)
Q Consensus 412 ---~~l~~~l~~~g-------~~~~sa~t~~G------------------i~~ll~~Ls~~~ 445 (480)
+++.+.+..++ +.++|+.++.+ +.++++.|....
T Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 23444554443 45778888876 778888877654
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.52 E-value=5.1e-14 Score=145.30 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=99.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~ 353 (480)
+|+++|.+|+|||||+++|+. .++|++.....+.... ..+.+|||||+.+ +......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--------~~i~iiDtPGh~~-------f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--------RNMVFVDAHSYPK-------TLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--------SEEEEEECTTTTT-------CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--------eEEEEEECCChHH-------HHHHHHH
Confidence 899999999999999999992 3566655554444332 3699999999854 3444566
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCE-EEEEe-CCCCcChHH---HHHHHHHHHHhc-----Cc
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDLPEARD---RLQSLTEEILKI-----GC 423 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~-ivV~N-K~Dl~~~~e---~~~~l~~~l~~~-----g~ 423 (480)
.+..+|++|+||| +.. ...+...++..+.. .+.|. ++|+| |+|+ .... ..+++.+.+... .+
T Consensus 80 ~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQG-LDAHTGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp HHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred HHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 7788999999999 543 33344445455554 35677 99999 9999 5422 123344444332 34
Q ss_pred ee--eeccc---ccCHHHHHHHHHHhc
Q 011645 424 DK--VTSET---ELSSEDAVKSLSTEG 445 (480)
Q Consensus 424 ~~--~sa~t---~~Gi~~ll~~Ls~~~ 445 (480)
.+ +|+.+ ++|++++++.|.+..
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhc
Confidence 57 89999 999999999887654
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.51 E-value=6.3e-14 Score=152.95 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=101.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccC---------------CCceeeeccceeccCCCCCCccccCCceEEecCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
.+.+|+|+|.+++|||||+++|+.....+.. ..+.|+......+.+... ... ...+.+||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~--~~~l~liDTP 79 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGE--TYQLNFIDTP 79 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSC--EEEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCC--eEEEEEEECC
Confidence 4568999999999999999999864322211 122333333223322100 000 1268899999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHH
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 413 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~ 413 (480)
|+.+ +...+.+.+..||++|+|+|+++....+....|...+. .+.|+++|+||+|+..+. +..++
T Consensus 80 Gh~d-------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~~~~v~~e 146 (599)
T 3cb4_D 80 GHVD-------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAADPERVAEE 146 (599)
T ss_dssp CCGG-------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred CchH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCcccccHHHHHHH
Confidence 9965 34456677888999999999998877777766655544 368999999999998642 22333
Q ss_pred HHHHHHh--cCceeeecccccCHHHHHHHHHHhcC
Q 011645 414 LTEEILK--IGCDKVTSETELSSEDAVKSLSTEGG 446 (480)
Q Consensus 414 l~~~l~~--~g~~~~sa~t~~Gi~~ll~~Ls~~~~ 446 (480)
+.+.+.. ..+.++|+.++.|++++++++.....
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 4333211 12568999999999999999987764
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=6.8e-14 Score=146.91 Aligned_cols=148 Identities=18% Similarity=0.113 Sum_probs=93.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-----------cCCCceeee----------------------ccceeccC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTLM----------------------PNLGRLDG 316 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-----------a~~pfTTl~----------------------p~~g~v~~ 316 (480)
+...+|+++|.+|+|||||+++|+.....+ +.+++||.. .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456789999999999999999998664322 123333321 11111111
Q ss_pred CCCCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE
Q 011645 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i 396 (480)
. ...+.+|||||+.+ +...+...+..+|++|+|+|+++....+..+ ++..+... ..+|++
T Consensus 102 ~--------~~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~----~~~~iI 161 (434)
T 1zun_B 102 A--------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL----GIKHIV 161 (434)
T ss_dssp S--------SEEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT----TCCEEE
T ss_pred C--------CceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc----CCCeEE
Confidence 1 13689999999854 3445567788999999999999865444333 33334432 124699
Q ss_pred EEEeCCCCcCh-HHH----HHHHHHHHHhcC-------ceeeecccccCHHHH
Q 011645 397 VVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDA 437 (480)
Q Consensus 397 vV~NK~Dl~~~-~e~----~~~l~~~l~~~g-------~~~~sa~t~~Gi~~l 437 (480)
+|+||+|+... ++. .+++.+.+..++ +.++|+.++.|+.++
T Consensus 162 vviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 162 VAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp EEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred EEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 99999999863 222 334444555555 447799999998873
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=1.1e-13 Score=143.66 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=101.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc----------------cCCCceeeeccceeccCCCCCCccccCCceEEecCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTP 335 (480)
..+|+++|.+|+|||||+++|++..... ....++|++.....+... ...+.+||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtp 74 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCP 74 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECC
Confidence 3589999999999999999998741100 002344544332223221 1379999999
Q ss_pred cccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHH---
Q 011645 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--- 411 (480)
Q Consensus 336 Glie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~--- 411 (480)
|+.+. .......+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+....+..
T Consensus 75 G~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~ 141 (397)
T 1d2e_A 75 GHADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELV 141 (397)
T ss_dssp SHHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred ChHHH-------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHH
Confidence 98542 33455667889999999999987655554444 44443 3577 68999999998533322
Q ss_pred -HHHHHHHHhcC-------ceeeecccccC----------HHHHHHHHHHhcC
Q 011645 412 -QSLTEEILKIG-------CDKVTSETELS----------SEDAVKSLSTEGG 446 (480)
Q Consensus 412 -~~l~~~l~~~g-------~~~~sa~t~~G----------i~~ll~~Ls~~~~ 446 (480)
+++.+.+...+ +.++|+.++.+ +.++++.+.....
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 34444555443 45778887653 8899998876553
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=7.3e-15 Score=160.31 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=83.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-------------------------------cCCCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+|+|||||+++|+.....+ ...+++|++.....+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456789999999999999999996432111 0134566666555554332
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-------ChhhHHHHHHHHHhhCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL 391 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-------~~~~~~~l~~eL~~~~~~l~ 391 (480)
..+.||||||+.+. .......+..||++|+|||++.+. ..+..+ ....+.. .
T Consensus 255 --------~~i~iiDTPGh~~f-------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~-----l 313 (592)
T 3mca_A 255 --------KIYEIGDAPGHRDF-------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA-----L 313 (592)
T ss_dssp ------------CCEEESSSEE-------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH-----S
T ss_pred --------eEEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH-----c
Confidence 37899999998643 333456677899999999998742 222222 2233333 2
Q ss_pred CCC-EEEEEeCCCCcC-hHHHH----HHHHHHH-HhcC-------ceeeecccccCHH--------------HHHHHHHH
Q 011645 392 ERP-FIVVLNKIDLPE-ARDRL----QSLTEEI-LKIG-------CDKVTSETELSSE--------------DAVKSLST 443 (480)
Q Consensus 392 ~kp-~ivV~NK~Dl~~-~~e~~----~~l~~~l-~~~g-------~~~~sa~t~~Gi~--------------~ll~~Ls~ 443 (480)
+.| +|+|+||+|+.. ..+.. .++.+.+ ..++ +.++|+.++.|+. .+++.|..
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 455 999999999975 23333 3344444 3333 4588999999997 67877764
Q ss_pred h
Q 011645 444 E 444 (480)
Q Consensus 444 ~ 444 (480)
.
T Consensus 394 ~ 394 (592)
T 3mca_A 394 L 394 (592)
T ss_dssp S
T ss_pred h
Confidence 3
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=1.6e-13 Score=127.86 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=97.8
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC--CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~--~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.+....+|+|+|.+|||||||+|+|++... .+.+.+++|.... .+.. ...+.++||||+........
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~---------~~~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV---------ADGKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE---------ETTEEEEECCCCC------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe---------cCCEEEEECcCCcccccCHH
Confidence 455667899999999999999999998762 2355666665322 2211 12578999999854211000
Q ss_pred ---cc---chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH---HHHHHH
Q 011645 346 ---GL---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTE 416 (480)
Q Consensus 346 ---gl---~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~---~~~l~~ 416 (480)
.+ ...++++...++.+++|+|++......+. .+...+.. ...|+++|.||+|+....+. ...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~ 164 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVRE 164 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHH
Confidence 01 11233334578999999999876554332 23333433 35899999999999865322 334444
Q ss_pred HHHhcC----ceeeecccccCHHHHHHHHHHhc
Q 011645 417 EILKIG----CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 417 ~l~~~g----~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.... ..++++.++.+++++++.|.+..
T Consensus 165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 444432 34789999999999999987654
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.48 E-value=7.8e-15 Score=156.85 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=103.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~ 350 (480)
..+.|+++|.+++|||||+++|.+........+++|.+.....+..+. ..+++|||||+.+. ...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--------~~i~~iDTPGhe~f-------~~~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--------GMITFLDTPGHAAF-------TSM 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--------SCCCEECCCTTTCC-------TTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--------EEEEEEECCCcHHH-------HHH
Confidence 346799999999999999999987654444456667655444443321 37899999998543 233
Q ss_pred hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH--HHHHHHHH--HH-H----hc
Q 011645 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTE--EI-L----KI 421 (480)
Q Consensus 351 fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~--e~~~~l~~--~l-~----~~ 421 (480)
+.+.+..||++++|+|+++....+..+.+ ..+.. .+.|+++|+||+|+.... .....+.+ .+ . ..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~ 141 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGES 141 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSC
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCc
Confidence 44567889999999999875444444433 23333 368999999999997531 11111100 00 1 12
Q ss_pred CceeeecccccCHHHHHHHHHHh
Q 011645 422 GCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 422 g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
.+.++|+.++.|++++++++...
T Consensus 142 ~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 142 QFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EEEECCTTTCTTCTTHHHHTTTT
T ss_pred cEEEEeeeeccCcchhhhhhhhh
Confidence 45688999999999999998643
No 173
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=1.6e-13 Score=139.30 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=97.8
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCCc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccchhhh
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl 352 (480)
||+++|..|||||||++++.+..... ......|.......+.. .-++.||||||+.+.... .+ ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~---------~v~LqIWDTAGQErf~~~--~l--~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST---------LIDLAVMELPGQLNYFEP--SY--DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECS---------SSCEEEEECCSCSSSCCC--SH--HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEcc---------EEEEEEEECCCchhccch--hh--hhh
Confidence 58999999999999999987543211 11122333333332210 137999999998543100 00 124
Q ss_pred hhhccCCEEEEecccCCCCChhhHHHH---HHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-------HHHHHHHHHh--
Q 011645 353 RHLRRTRLLVHVIDAAAENPVNDYRTV---KEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK-- 420 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~~~~~~~~l---~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-------~~~l~~~l~~-- 420 (480)
.+++.++++++|+|+++. ..+....| ..++..+. .+.|+++|+||+|+....+. ..+..+.+.+
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 567889999999999987 33444444 33344443 36899999999999864321 1222223333
Q ss_pred -----cCceeeecccccCHHHHHHHHHHhcCc
Q 011645 421 -----IGCDKVTSETELSSEDAVKSLSTEGGE 447 (480)
Q Consensus 421 -----~g~~~~sa~t~~Gi~~ll~~Ls~~~~~ 447 (480)
+.+.++||++ .++.++|..+......
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 2345889987 5899999999877643
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.46 E-value=1.3e-13 Score=144.80 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=90.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------------CCCceeeeccceeccCCCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT 319 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~ 319 (480)
...+|+++|.+|+|||||+++|+.....+. ...++|++.....+...
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-- 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-- 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence 456899999999999999999986421110 02455665544444332
Q ss_pred CCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChh-------hHHHHHHHHHhhCCCCCC
Q 011645 320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN-------DYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 320 ~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~-------~~~~l~~eL~~~~~~l~~ 392 (480)
...+.+|||||+.+ +...+...+..+|++|+|+|+++. .++ +.......+... .-
T Consensus 83 ------~~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~----~~ 144 (435)
T 1jny_A 83 ------KYFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKTM----GL 144 (435)
T ss_dssp ------SCEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHT----TC
T ss_pred ------CeEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHHc----CC
Confidence 13799999999854 344566778899999999999973 222 223333333332 12
Q ss_pred CCEEEEEeCCCCcCh---HH----HHHHHHHHHHhcC-------ceeeecccccCHHH
Q 011645 393 RPFIVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSED 436 (480)
Q Consensus 393 kp~ivV~NK~Dl~~~---~e----~~~~l~~~l~~~g-------~~~~sa~t~~Gi~~ 436 (480)
.++++|+||+|+... ++ ..+++.+.+...+ +.++|+.+++|+.+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 468999999999862 22 2344555555544 45789999999864
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=9.8e-14 Score=144.17 Aligned_cols=102 Identities=32% Similarity=0.507 Sum_probs=83.9
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCC--------Cccc-cCCceEEecCCcc
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GAEK-YSSEATLADLPGL 337 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~--------~~~~-~~~~~~l~DTPGl 337 (480)
.++....|+|||.||||||||+|+|++... .+++|||||++|+.|.+...+.. .... ....+.++||||+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 345567899999999999999999999887 77999999999999988654200 0000 0124789999999
Q ss_pred cccccccCccchhhhhhhccCCEEEEecccCC
Q 011645 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 369 (480)
Q Consensus 338 ie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~ 369 (480)
..+++.+++++..|+.+++.+|.+++|+|++.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988889999999999999999999999875
No 176
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.45 E-value=2.6e-14 Score=146.08 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=93.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC-----c-cCCCc----------------------eeeecc------------
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPN------------ 310 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~-----i-a~~pf----------------------TTl~p~------------ 310 (480)
..++|+|+|.||||||||+|+|++.+.. + +..|. ||.+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987643 2 33343 222100
Q ss_pred ---ceeccCCCCCC-ccccCCceEEecCCcccccccc--cC----ccchhhhhhhcc-CCEEEEecccCCCCChhhHHHH
Q 011645 311 ---LGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHL--GK----GLGRNFLRHLRR-TRLLVHVIDAAAENPVNDYRTV 379 (480)
Q Consensus 311 ---~g~v~~~~~~~-~~~~~~~~~l~DTPGlie~a~~--~~----gl~~~fl~~i~~-ad~ll~VvD~s~~~~~~~~~~l 379 (480)
.|.......+. .......++||||||+...+.. .. .+......++.. ++++++|+|++......+...+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00000000000 0000136999999999763321 11 223333445544 5677777777653222232223
Q ss_pred HHHHHhhCCCCCCCCEEEEEeCCCCcChHHH-HHHHHHHHHh--cC---ceeeecccccCHHHHHHHHHH
Q 011645 380 KEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IG---CDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 380 ~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~-~~~l~~~l~~--~g---~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
..++ .+ .+.|+++|+||+|+....+. ...+...... .+ +..+|+.++.|++++++.+..
T Consensus 190 ~~~~---~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV---DP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH---CT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh---Cc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 32 46899999999999754321 1111111111 12 346789999999999988865
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=148.01 Aligned_cols=133 Identities=21% Similarity=0.333 Sum_probs=85.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCC---ccCCCceeeeccceeccCCC-------CC------Cc---ccc-----
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------TL------GA---EKY----- 325 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~-------~~------~~---~~~----- 325 (480)
...+.|+|+|.+|||||||+|+|++.+.. ++..|.||... +.+..+. .. .. ..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 35678999999999999999999998863 57777775421 1111000 00 00 000
Q ss_pred ------------CCceEEecCCccccccc--ccCc--cchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC
Q 011645 326 ------------SSEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389 (480)
Q Consensus 326 ------------~~~~~l~DTPGlie~a~--~~~g--l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~ 389 (480)
..+++||||||+.+... .++. +.......+.++|++|+|+|++.....+....+.+.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 02689999999976322 1222 223445567889999999999875444444555555543
Q ss_pred CCCCCEEEEEeCCCCcChHH
Q 011645 390 YLERPFIVVLNKIDLPEARD 409 (480)
Q Consensus 390 l~~kp~ivV~NK~Dl~~~~e 409 (480)
...|+++|+||+|+....+
T Consensus 217 -~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp -CGGGEEEEEECGGGSCHHH
T ss_pred -cCCCEEEEEECCCccCHHH
Confidence 3579999999999987544
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.44 E-value=1.1e-13 Score=146.42 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=91.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCcc-------------------------C------CCceeeeccceeccCCCCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTL 320 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia-------------------------~------~pfTTl~p~~g~v~~~~~~ 320 (480)
..+|+++|.+|+|||||+++|+.....+. + ..++|++.....+...
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~--- 83 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC---
Confidence 46899999999999999999986421110 0 1344554444333322
Q ss_pred CccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCCh-------hhHHHHHHHHHhhCCCCCCC
Q 011645 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMYNPDYLER 393 (480)
Q Consensus 321 ~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~-------~~~~~l~~eL~~~~~~l~~k 393 (480)
...+.||||||+.+ +.......+..+|++|+|||+++.... +..+ .+..+.. .+.
T Consensus 84 -----~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~-----~~v 145 (458)
T 1f60_A 84 -----KYQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT-----LGV 145 (458)
T ss_dssp -----SEEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH-----TTC
T ss_pred -----CceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH-----cCC
Confidence 13699999999743 344566778899999999999864211 2222 2222332 245
Q ss_pred C-EEEEEeCCCCcC-hHHH----HHHHHHHHHh-------cCceeeecccccCHHH
Q 011645 394 P-FIVVLNKIDLPE-ARDR----LQSLTEEILK-------IGCDKVTSETELSSED 436 (480)
Q Consensus 394 p-~ivV~NK~Dl~~-~~e~----~~~l~~~l~~-------~g~~~~sa~t~~Gi~~ 436 (480)
| +++|+||+|+.. .++. .+++.+.+.. ..+.++|+.++.++.+
T Consensus 146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 5 899999999984 2222 2334444443 3456889999998863
No 179
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.43 E-value=4.6e-13 Score=146.10 Aligned_cols=161 Identities=18% Similarity=0.123 Sum_probs=96.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccC-------CCCCCc---cccCCceEEecCCcccccc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-------DPTLGA---EKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~-------~~~~~~---~~~~~~~~l~DTPGlie~a 341 (480)
.++|+++|.+|+|||||+++|++.........++|.+.....+.. ...... ......+.+|||||+.+..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 368999999999999999999865321111002221110000000 000000 0001258999999985542
Q ss_pred cccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--------------
Q 011645 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------- 407 (480)
Q Consensus 342 ~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-------------- 407 (480)
....+.+..||++|+|+|++++...+.++.| ..+.. .+.|+++|+||+|+...
T Consensus 85 -------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 85 -------TLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp -------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred -------HHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH-----cCCeEEEEecccccccccccccCCchHHHHH
Confidence 2223456779999999999986555555544 34444 36899999999999641
Q ss_pred ---HH-------HHHHHHHHHHhc-----------------CceeeecccccCHHHHHHHHHHhc
Q 011645 408 ---RD-------RLQSLTEEILKI-----------------GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 408 ---~e-------~~~~l~~~l~~~-----------------g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.. .+.++.+.+... .+.++|+.++.|++++++++....
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 00 111223333332 345789999999999999987544
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.42 E-value=9.9e-14 Score=141.90 Aligned_cols=165 Identities=20% Similarity=0.184 Sum_probs=91.2
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccc-------------eeccCCCC----------------
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-------------GRLDGDPT---------------- 319 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~-------------g~v~~~~~---------------- 319 (480)
...++.|+|||.+|||||||+|+|++..........+|..|.. +.+.....
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 3456799999999999999999999976422111122211110 00000000
Q ss_pred ----------CC--------ccccCCceEEecCCcccccccc------cCccchhhhhhhccCCEEEEecccCCCCChhh
Q 011645 320 ----------LG--------AEKYSSEATLADLPGLIEGAHL------GKGLGRNFLRHLRRTRLLVHVIDAAAENPVND 375 (480)
Q Consensus 320 ----------~~--------~~~~~~~~~l~DTPGlie~a~~------~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~ 375 (480)
.. .......+++|||||+...... ...+...+..++..+|++++|+|.+..+...
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~- 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT- 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-
Confidence 00 0000136899999999874321 1123445567789999999999987644322
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHH-HHHHH--HhcCceeeecccccCHHHH
Q 011645 376 YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEI--LKIGCDKVTSETELSSEDA 437 (480)
Q Consensus 376 ~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~-l~~~l--~~~g~~~~sa~t~~Gi~~l 437 (480)
..+...+....+ .++|+++|+||+|+......... +.... ...++..+++.+..++++.
T Consensus 190 -~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 190 -SDAIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp -CHHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTT
T ss_pred -HHHHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccC
Confidence 123334444332 36799999999998754221111 11111 1235556666655555443
No 181
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=137.81 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=85.6
Q ss_pred cceEEEecCCCCChHHHHHHHhcC------CCCc-cCCC-------------------------ceeeeccceeccCCCC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYP-------------------------FTTLMPNLGRLDGDPT 319 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~------~~~i-a~~p-------------------------fTTl~p~~g~v~~~~~ 319 (480)
...|+|+|+||||||||+|+|++. +..+ +.-| +.|..|..+.+.+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 678999999999999999999863 2222 1111 1111121111100000
Q ss_pred C--Cc----cccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCC
Q 011645 320 L--GA----EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (480)
Q Consensus 320 ~--~~----~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (480)
. .. ...+..++++||||+... .....+.+|++++|+|++.++..+. +.. .+...
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~~---i~~-------~il~~ 213 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQG---IKR-------GIIEM 213 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHHH---hHH-------HHHhc
Confidence 0 00 001236899999998532 1233568999999999986532211 111 12356
Q ss_pred CEEEEEeCCCCcChHH---HHHHHHHHHHh---------cCceeeecccccCHHHHHHHHHHhc
Q 011645 394 PFIVVLNKIDLPEARD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 394 p~ivV~NK~Dl~~~~e---~~~~l~~~l~~---------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|.++|+||+|+..... ....+...+.. ..+..+|+.+++|+++++++|.+..
T Consensus 214 ~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 214 ADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 8899999999975322 12233322211 1235689999999999999998765
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.40 E-value=2.9e-13 Score=143.57 Aligned_cols=149 Identities=22% Similarity=0.236 Sum_probs=83.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc-------------------------cC------CCceeeeccceeccCCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------AD------YPFTTLMPNLGRLDGDP 318 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-------------------------a~------~pfTTl~p~~g~v~~~~ 318 (480)
+...+|+++|.+|+|||||+++|+.....+ .+ ..++|++.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 456789999999999999999997432111 00 1234544443333322
Q ss_pred CCCccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC---Ch---hhHHHHHHHHHhhCCCCCC
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN---PV---NDYRTVKEELRMYNPDYLE 392 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~---~~---~~~~~l~~eL~~~~~~l~~ 392 (480)
...+.||||||+.+ +...+...+..+|++|+|||+++.. .+ .+....+..+.. .+
T Consensus 120 -------~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-----~~ 180 (467)
T 1r5b_A 120 -------HRRFSLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-----QG 180 (467)
T ss_dssp -------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-----TT
T ss_pred -------CeEEEEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-----cC
Confidence 13789999999854 3334566678899999999998752 11 112222222322 35
Q ss_pred CC-EEEEEeCCCCcCh---HHH----HHHHHHHHHhc---------CceeeecccccCHHHHH
Q 011645 393 RP-FIVVLNKIDLPEA---RDR----LQSLTEEILKI---------GCDKVTSETELSSEDAV 438 (480)
Q Consensus 393 kp-~ivV~NK~Dl~~~---~e~----~~~l~~~l~~~---------g~~~~sa~t~~Gi~~ll 438 (480)
.| +|+|+||+|+... ++. .+++.+.+... .+.++|+.++.|+.+++
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 66 9999999999641 222 22344444333 35678999999987643
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.39 E-value=3.6e-13 Score=145.07 Aligned_cols=129 Identities=21% Similarity=0.292 Sum_probs=81.7
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCcc----------------C------CCceeeeccceeccCCCCCCccccC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------D------YPFTTLMPNLGRLDGDPTLGAEKYS 326 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia----------------~------~pfTTl~p~~g~v~~~~~~~~~~~~ 326 (480)
++...+|+|+|.+|||||||+++|+.....+. + ..++|+......+.+. .
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~ 81 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------D 81 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------T
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------C
Confidence 45567899999999999999999986432220 0 1112222222222211 1
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
..+.||||||+.+ +.....+++..+|++|+|+|++....... ..++..+.. .+.|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~~d-------f~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-----~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 82 CLVNLLDTPGHED-------FSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-----RDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-----TTCCEEEEEECTTSCC
T ss_pred eEEEEEECCCChh-------HHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-----cCCCEEEEEcCcCCcc
Confidence 3689999999854 34456778889999999999998654333 333333332 3689999999999976
Q ss_pred hH--HHHHHHHHHH
Q 011645 407 AR--DRLQSLTEEI 418 (480)
Q Consensus 407 ~~--e~~~~l~~~l 418 (480)
.. +.++++.+.+
T Consensus 149 ~~~~~~~~~i~~~l 162 (529)
T 2h5e_A 149 RDPMELLDEVENEL 162 (529)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 42 3344444443
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.39 E-value=1.2e-12 Score=145.32 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=79.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCC------c------cC------CCceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~------i------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
....+|+|+|.+|+|||||+++|+..... + .+ ..++|+......+.+. ...+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------~~~i~l 81 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------DHRINI 81 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--------TEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--------CeEEEE
Confidence 45678999999999999999999842111 1 11 2234443333333222 137899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
|||||+.+ +...+.+++..+|++|+|+|++.....+....|. .+.. .+.|+++|+||+|+...
T Consensus 82 iDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 82 IDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEECTTSTTC
T ss_pred EECcCccc-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCcccC
Confidence 99999854 3455677888999999999999887776655544 4444 36899999999999753
No 185
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=2.3e-12 Score=148.00 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=99.8
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCC-----C-----c------cCCCceeeeccceeccCCCCCCccccCCceEEec
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKP-----D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~-----~-----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
+...+|+++|.+|+|||||+++|++... . . ....++|++.....+... ...+.|||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IID 365 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVD 365 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEE
Confidence 3457899999999999999999986410 0 0 012233433322222211 23799999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCCcChHHHH-
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 411 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl~~~~e~~- 411 (480)
|||+.+. .......+..+|++|+|||+++....+..+ ++..+.. .+.| +|+|+||+|+...++.+
T Consensus 366 TPGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL~ll~~-----lgIP~IIVVINKiDLv~d~e~le 432 (1289)
T 3avx_A 366 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLGRQ-----VGVPYIIVFLNKCDMVDDEELLE 432 (1289)
T ss_dssp CCCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-HHHHHHH-----HTCSCEEEEEECCTTCCCHHHHH
T ss_pred CCChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-HHHHHHH-----cCCCeEEEEEeecccccchhhHH
Confidence 9998642 334556678899999999999865444433 3344444 2577 78999999998643322
Q ss_pred ---HHHHHHHHhcC-------ceeeecccc--------cCHHHHHHHHHHhc
Q 011645 412 ---QSLTEEILKIG-------CDKVTSETE--------LSSEDAVKSLSTEG 445 (480)
Q Consensus 412 ---~~l~~~l~~~g-------~~~~sa~t~--------~Gi~~ll~~Ls~~~ 445 (480)
+++.+.+...+ +.++|+.++ .|+.++++.|....
T Consensus 433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 34444555443 457898888 57889999887655
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.36 E-value=1e-12 Score=134.44 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=67.8
Q ss_pred CceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
..++|+||||+... ....++.+|++++|+|++..+..+.+. ..+.+.|.++|+||+|+..
T Consensus 172 ~~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l~----------~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGIK----------KGVLELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTCC----------TTSGGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHHH----------HhHhhcCCEEEEECCCCcC
Confidence 37999999997432 233457899999999987654332211 1233579999999999975
Q ss_pred hHH---HHHHHHHHHHh---------cCceeeecccccCHHHHHHHHHHhc
Q 011645 407 ARD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 407 ~~e---~~~~l~~~l~~---------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
... ....+.+.+.. ..+.++|+.+++|++++++++.+..
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 432 22333333321 3466899999999999999998765
No 187
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.34 E-value=4.4e-13 Score=149.28 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=100.9
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccC-----------CCC-------------------
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-----------DPT------------------- 319 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~-----------~~~------------------- 319 (480)
-.+++|+|+|.+|||||||+|+|++...-......+|..|..-.+.. ...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35689999999999999999999997652222223443221111000 000
Q ss_pred ------CC--c------cccCCceEEecCCcccccccc--c----Cccchhhhhhh-ccCCEEEEecccCCCCChhhHHH
Q 011645 320 ------LG--A------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRT 378 (480)
Q Consensus 320 ------~~--~------~~~~~~~~l~DTPGlie~a~~--~----~gl~~~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~ 378 (480)
.. . .....+++|+||||+...+.. . ..+......++ ..+|++|+|+|++.....++...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00 0 000135889999999873211 1 11222223333 57899999999997654455434
Q ss_pred HHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHH-HHH--hcC---ceeeecccccCHHHHHHHHHH
Q 011645 379 VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EIL--KIG---CDKVTSETELSSEDAVKSLST 443 (480)
Q Consensus 379 l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~-~l~--~~g---~~~~sa~t~~Gi~~ll~~Ls~ 443 (480)
+..++.. .++|+++|+||+|+.........+.. .+. ..+ +..+|+.++.|++++++.+.+
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 5455543 36899999999999864332222211 110 112 346799999999999988875
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=131.48 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=71.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCC-------ceeeeccceeccCCCCCCccccCCceEEecCCcccccccc--
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-- 343 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~-- 343 (480)
++|+|+|.+|+|||||+|+|.+.......+. ..|.......+.... ......+.+|||||+.+....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~----~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE----RGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC--------CEEEEEEEEC------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec----CCcccceEEEEeccccccCccHH
Confidence 6789999999999999999987654332221 122211111111110 011126899999999543211
Q ss_pred -cCccch-------hhhhhhc----------cCCEEEEecccCCCCChhhHH-HHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 344 -GKGLGR-------NFLRHLR----------RTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 344 -~~gl~~-------~fl~~i~----------~ad~ll~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
-..+.. .+++... ++|+++|+||.+.. ...... .+...+ . ...|+|+|+||+|+
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d~~~~~~l---~---~~~piIlV~NK~Dl 186 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI---H---NKVNIVPVIAKADT 186 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHHHHHHHHT---C---S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhHHHHHHHh---c---cCCCEEEEEECCCC
Confidence 112222 2222221 23578888876432 223322 232322 2 36899999999999
Q ss_pred cChHHHHH---HHHHHHHhc--CceeeecccccCHHHHHHHHHHh
Q 011645 405 PEARDRLQ---SLTEEILKI--GCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 405 ~~~~e~~~---~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
....+... .+.+.+... .+.++++.++.+ ++.+.++...
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 87654322 333333333 455778888777 5555554443
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.34 E-value=2.3e-12 Score=143.02 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=85.1
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc------------cC------CCceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i------------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
..+.+|+|+|.+|||||||+|+|+.....+ .+ .+++|+......+.+. ...+.|
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--------~~~i~l 79 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--------GHRVNI 79 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--------TEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--------CeeEEE
Confidence 345689999999999999999998422111 11 2344544444444332 137899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--HH
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 409 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~--~e 409 (480)
|||||+.+ +...+.+++..+|++|+|+|++.....+....| ..+.. .+.|+++|+||+|+... .+
T Consensus 80 iDTPG~~d-------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~-----~~~p~ilviNK~Dl~~~~~~~ 146 (693)
T 2xex_A 80 IDTPGHVD-------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT-----YGVPRIVFVNKMDKLGANFEY 146 (693)
T ss_dssp ECCCCCSS-------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECTTSTTCCHHH
T ss_pred EECcCCcc-------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEECCCccccchHH
Confidence 99999954 344567788889999999999987766665544 44554 36899999999999864 23
Q ss_pred HHHHHHHHH
Q 011645 410 RLQSLTEEI 418 (480)
Q Consensus 410 ~~~~l~~~l 418 (480)
.++.+.+.+
T Consensus 147 ~~~~l~~~l 155 (693)
T 2xex_A 147 SVSTLHDRL 155 (693)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444555444
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.31 E-value=1.3e-11 Score=137.29 Aligned_cols=124 Identities=18% Similarity=0.093 Sum_probs=79.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCCCCc------------cC------CCceeeeccceeccCCCCCCccccCCceEE
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~~~i------------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l 331 (480)
..+.+|+|+|.+|+|||||+++|+.....+ .+ ..++|+......+.+.... ...-...+.|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA-KQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc-ccCCceeEEE
Confidence 456789999999999999999997432111 11 1233433333333222100 0000137899
Q ss_pred ecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 332 ~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
|||||+.+ +...+.+.+..||++|+|+|++.....+....| ..+.. .+.|+++|+||+|+...
T Consensus 87 iDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVD-------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccc-------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEeCCCcccc
Confidence 99999865 234456778889999999999987655444433 33333 36899999999998753
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=4.5e-12 Score=129.02 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=89.4
Q ss_pred hheecceEEEecCCCCChHHHHHHHhcC------CCCc-cCCCceeeec--cce--------------eccC-C--CCCC
Q 011645 268 ILRVVADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYPFTTLMP--NLG--------------RLDG-D--PTLG 321 (480)
Q Consensus 268 ~lk~~~~V~lvG~pNaGKSSLlnaLt~~------~~~i-a~~pfTTl~p--~~g--------------~v~~-~--~~~~ 321 (480)
.......|+++|.||||||||+++|++. +..+ ...+++|... ..+ .+.. . ....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 3456678999999999999999999642 2222 3334433210 000 0000 0 0000
Q ss_pred c----------c--ccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCC
Q 011645 322 A----------E--KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389 (480)
Q Consensus 322 ~----------~--~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~ 389 (480)
. . .-+.+++|+||||+.+.. ......+|++++|+|++..+..+.+. ...
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~~~~~~l~---~~~------ 192 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGGDDLQGIK---KGL------ 192 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC------CCCC---HHH------
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCccHHHHHHH---Hhh------
Confidence 0 0 002379999999986531 11247899999999997643221111 111
Q ss_pred CCCCCEEEEEeCCCCcChHHH---HHHHHHHHHhc---------CceeeecccccCHHHHHHHHHHhc
Q 011645 390 YLERPFIVVLNKIDLPEARDR---LQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 390 l~~kp~ivV~NK~Dl~~~~e~---~~~l~~~l~~~---------g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.|.++|+||+|+...... .+.+.+.+..+ .+.++|+.+++|++++++.+....
T Consensus 193 -~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 193 -MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp -HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 13678999999999864322 22343333322 234789999999999999998765
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.29 E-value=1.4e-11 Score=136.07 Aligned_cols=116 Identities=24% Similarity=0.223 Sum_probs=77.5
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCCCcc------------CC------CceeeeccceeccCCCCCCccccCCceE
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA------------DY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia------------~~------pfTTl~p~~g~v~~~~~~~~~~~~~~~~ 330 (480)
+..+.+|+|+|.+|+|||||+++|++....+. ++ .+.|.......+... ...+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n 77 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF 77 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence 45567899999999999999999985432211 00 011222222122111 13689
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
+|||||+.+ +.....+.+..+|++++|+|++.....+.. .++..+.. .+.|+++|+||+|+.
T Consensus 78 liDTpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 78 LLDAPGYGD-------FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEECCCSGG-------GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEeCCCccc-------hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence 999999854 334567778889999999998876554443 44455554 358999999999986
No 193
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=4.8e-13 Score=137.84 Aligned_cols=118 Identities=24% Similarity=0.233 Sum_probs=85.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC------CCCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~------~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g 346 (480)
.+|+++|.||+|||||+|+|++. ...++++|+||.+.....+. ..+.++||||+.........
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~~ 231 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMAHF 231 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGGGG
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHHHH
Confidence 47999999999999999999987 44568999999987765542 35899999999876555556
Q ss_pred cchhhhhhh---ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 347 LGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 347 l~~~fl~~i---~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
+...++.++ .+.+.++|++|+........+..+ +.+. ..+.|+++|+||+|....
T Consensus 232 l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l-~~l~-----~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 232 VDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARL-DYIK-----GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEE-EEEE-----SSSEEEEEEECTTSCEEE
T ss_pred HhHHHHHHHhcccccCceEEEEcCCceEEECCEEEE-EEcc-----CCCceEEEEecCCccccc
Confidence 666777777 889999999998432111111000 0011 135799999999998753
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=3.8e-11 Score=115.99 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=70.1
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHH-HHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+||||..+..... .+...+.+++.. +++++|+|++......++..... .+.... ..+.|+++|+||+|+..
T Consensus 110 d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp SEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 69999999997643221 123344456677 99999999976544333332211 111000 12589999999999976
Q ss_pred hHHH--HHHH-------HHH------------------HHh----cCceeeecccccCHHHHHHHHHHhc
Q 011645 407 ARDR--LQSL-------TEE------------------ILK----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 407 ~~e~--~~~l-------~~~------------------l~~----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
..+. +.+. .+. +.. ..+.++|+.+++|++++++++.+..
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 4321 1111 111 122 2467889999999999999997654
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.22 E-value=9.6e-11 Score=126.71 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=87.1
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhcCCCCc----------------cC------CCceeeeccceeccCCCCCCccc
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEK 324 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~~~i----------------a~------~pfTTl~p~~g~v~~~~~~~~~~ 324 (480)
-+...+..|+|+|+..+|||||..+|+-..-.+ .+ .-+.|+......+.+.
T Consensus 26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~------- 98 (548)
T 3vqt_A 26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR------- 98 (548)
T ss_dssp HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-------
T ss_pred hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-------
Confidence 356677889999999999999999996332111 11 1122333333333322
Q ss_pred cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
+..+.|+||||+.+. .....+.+.-+|.+|+|||+..+...+... ++..+..+ +.|.++++||+|.
T Consensus 99 -~~~iNlIDTPGHvDF-------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~~-----~lp~i~fINK~Dr 164 (548)
T 3vqt_A 99 -DRVVNLLDTPGHQDF-------SEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRMR-----ATPVMTFVNKMDR 164 (548)
T ss_dssp -TEEEEEECCCCGGGC-------SHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHHT-----TCCEEEEEECTTS
T ss_pred -CEEEEEEeCCCcHHH-------HHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHHh-----CCceEEEEecccc
Confidence 137999999999774 445678888999999999999876555544 44555553 6899999999998
Q ss_pred cCh--HHHHHHHHHHH
Q 011645 405 PEA--RDRLQSLTEEI 418 (480)
Q Consensus 405 ~~~--~e~~~~l~~~l 418 (480)
..+ .+.++++.+.+
T Consensus 165 ~~ad~~~~~~~i~~~l 180 (548)
T 3vqt_A 165 EALHPLDVMADIEQHL 180 (548)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred hhcchhHhhhhhhhhc
Confidence 754 33444444433
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.20 E-value=1.5e-11 Score=139.31 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=79.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCc-cCC---------------CceeeeccceeccCCC----------CCCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADY---------------PFTTLMPNLGRLDGDP----------TLGAEK 324 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~i-a~~---------------pfTTl~p~~g~v~~~~----------~~~~~~ 324 (480)
.+.+|+|+|.+|+|||||+++|+.....+ ... .+.|+......+.+.. .....
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~- 96 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN- 96 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS-
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC-
Confidence 45689999999999999999998653222 111 1223222222211110 00000
Q ss_pred cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
...+.||||||+.+ +...+.++++.+|++|+|+|++++...+....|...+. .+.|+++|+||+|+
T Consensus 97 -~~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 97 -SFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDR 162 (842)
T ss_dssp -EEEEEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHH
T ss_pred -CceEEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCCc
Confidence 13689999999965 34456778889999999999998877777655544333 35899999999998
Q ss_pred c
Q 011645 405 P 405 (480)
Q Consensus 405 ~ 405 (480)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 7
No 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=3e-12 Score=131.94 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=78.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC-------CCccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~-------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
.+|+++|.||||||||+|+|++.. ..++++|+||.+.....+. ..+.++||||+.+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~ 229 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQMAH 229 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSGGG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHHHH
Confidence 479999999999999999999862 2358899999887765542 2589999999987654444
Q ss_pred ccchhhhhh---hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 346 GLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 346 gl~~~fl~~---i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
.+....+.+ ..+.+.++|++|.........+.. .+.|. ..+.|+++|+||+|....
T Consensus 230 ~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~-----~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 230 YVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS-----GGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp GSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE-----SSSEEEEEEECTTSCEEE
T ss_pred HhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec-----CCCceEEEEecCcccccc
Confidence 455555555 367889999999843211111100 00011 135799999999998764
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.16 E-value=7.6e-11 Score=119.96 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=89.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhc------CCCCc-cCCCceeee--------ccceeccCCCCCC--------
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFTTLM--------PNLGRLDGDPTLG-------- 321 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~------~~~~i-a~~pfTTl~--------p~~g~v~~~~~~~-------- 321 (480)
+.+.+.....|+|+|+||||||||+|+|++ .+..+ +..+.++.. ...+.+..+....
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence 334556667899999999999999999984 33322 222222110 0000000000000
Q ss_pred ---------------ccccCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhh
Q 011645 322 ---------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 386 (480)
Q Consensus 322 ---------------~~~~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~ 386 (480)
....+.+++|+||||+.+.. ....+.+|++++|+|++..+.. +.+...+
T Consensus 128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~~---~~i~~~i--- 191 (337)
T 2qm8_A 128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDEL---QGIKKGI--- 191 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH---
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcccH---HHHHHHH---
Confidence 00012379999999986531 1224679999999998643211 1111111
Q ss_pred CCCCCCCCEEEEEeCCCCcChHHH----HHHHHHHHH---------hcCceeeecccccCHHHHHHHHHHhc
Q 011645 387 NPDYLERPFIVVLNKIDLPEARDR----LQSLTEEIL---------KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 387 ~~~l~~kp~ivV~NK~Dl~~~~e~----~~~l~~~l~---------~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+.++|+||+|+....+. .+.+...+. ...+..+++.++.|++++++.+.+..
T Consensus 192 ----~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 192 ----FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ----HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12456888899997543222 222222221 12345689999999999999987654
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.11 E-value=2.2e-10 Score=126.05 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=78.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcCCCCc---c---------CCC------ceeeeccceeccCCCCCCccccCCceEEec
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHAKPDI---A---------DYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~~~~i---a---------~~p------fTTl~p~~g~v~~~~~~~~~~~~~~~~l~D 333 (480)
+.+|+|+|+..+|||||..+|....-.+ . ++- +.|+......+.+. +..+.|+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~iNlID 73 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------NTKVNIID 73 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--------SCBCCCEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--------CEEEEEEE
Confidence 4579999999999999999995322111 1 110 22332222223222 23789999
Q ss_pred CCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh
Q 011645 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 407 (480)
Q Consensus 334 TPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~ 407 (480)
|||+.+. .....+.++-+|.+|+|||+..+...+... ++..+..+ +.|.++++||+|....
T Consensus 74 TPGH~DF-------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~~-----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 74 TPGHMDF-------LAEVYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRKM-----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp CCCSSST-------HHHHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHHH-----TCSCEECCEECCSSSC
T ss_pred CCCcHHH-------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHHc-----CCCeEEEEeccccccC
Confidence 9999764 455678888899999999999876555544 44555553 5889999999998653
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.11 E-value=7.3e-11 Score=110.91 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=90.7
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC-----CC-ccCCCceeeeccc--------eeccCCCCCCc----------ccc
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPNL--------GRLDGDPTLGA----------EKY 325 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~-----~~-ia~~pfTTl~p~~--------g~v~~~~~~~~----------~~~ 325 (480)
+....|+|+|++|||||||+++|+... .. +...+++|.+... ..+........ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 355789999999999999999998652 11 1223333322110 00111000000 001
Q ss_pred CCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 326 ~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
...++++||+|...... ... ..++.+++|+|++.... ... ..+.. ...|.++|+||+|+.
T Consensus 108 ~~d~iiidt~G~~~~~~--------~~~--~~~~~~i~vvd~~~~~~--~~~---~~~~~-----~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV--------DFD--LGENYRVVMVSVTEGDD--VVE---KHPEI-----FRVADLIVINKVALA 167 (221)
T ss_dssp TCSEEEEEEEEBSSGGG--------GCC--CSCSEEEEEEEGGGCTT--HHH---HCHHH-----HHTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCCCCCc--------hhc--cccCcEEEEEeCCCcch--hhh---hhhhh-----hhcCCEEEEecccCC
Confidence 23689999999622110 000 13578999999987532 111 11111 147889999999986
Q ss_pred ChH-HHHHHHHHHHHh----cCceeeecccccCHHHHHHHHHHhc
Q 011645 406 EAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 406 ~~~-e~~~~l~~~l~~----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
... ...+.+.+.+.. ..+.++|+.++.|+++++++|.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 168 EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 431 123334444433 3456889999999999999998766
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=114.75 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=71.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCc-------eeeeccceeccCCCCCCccccCCceEEecCCcccccccccC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~ 345 (480)
++|+|+|.+|||||||+|+|++.......+.. |+.....+.+... ......+++|||||+........
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-----~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-----GGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----------CEEEEEEECC----------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-----CCcccceeeeechhhhhhccchh
Confidence 46799999999999999999987643221211 1111111111000 01113689999999864311000
Q ss_pred ---cc----chhhh-----------hhh--ccCCEEEEecccC-CCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 346 ---GL----GRNFL-----------RHL--RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 346 ---gl----~~~fl-----------~~i--~~ad~ll~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
.+ ...+- ..+ .+++++||+++.+ ......+. .+...|. ...|+|+|+||+|+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dl 179 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADT 179 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccC
Confidence 00 00000 112 3356778887775 23322232 3444443 25899999999999
Q ss_pred cChHHHH---HHHHHHHHh--cCceeeecccccCHHHHHHHHHHhc
Q 011645 405 PEARDRL---QSLTEEILK--IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 405 ~~~~e~~---~~l~~~l~~--~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
....+.. +.+.+.+.. +.+.++++.+..++++++..+....
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred ccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 8754322 234444444 3455778888888888777776543
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=3.5e-10 Score=113.24 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=74.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccC-CCc------eeee-ccceec-cCCCCCCccccCCceEEecCCccccccc-
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF------TTLM-PNLGRL-DGDPTLGAEKYSSEATLADLPGLIEGAH- 342 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~-~pf------TTl~-p~~g~v-~~~~~~~~~~~~~~~~l~DTPGlie~a~- 342 (480)
++|+|+|.+|||||||+++|.+....... .++ .|.. ...+.+ ... .....+++|||||+.....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~------~~~~~ltv~Dt~g~~~~~~~ 92 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER------GVKLRLTVVDTPGYGDAINC 92 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---------CCEEEEEEEEC--------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC------CcccCcchhhhhhhhhhcCc
Confidence 57899999999999999999875322211 110 1111 111111 111 1123689999999842210
Q ss_pred --ccCccch-------hhhhhh----------ccCCEEEEecccCCC-CChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 343 --LGKGLGR-------NFLRHL----------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 343 --~~~gl~~-------~fl~~i----------~~ad~ll~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
.-..+.. .+++.+ .++++++|+++.+.. ....+. +.+.... ...++++|+||+
T Consensus 93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~---~~~~iilV~~K~ 165 (301)
T 2qnr_A 93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH---NKVNIVPVIAKA 165 (301)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT---TTSCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH---hcCCEEEEEEeC
Confidence 0011111 122221 245567777776432 222222 2333332 246899999999
Q ss_pred CCcChHHH---HHHHHHHHHhc--CceeeecccccCHHHHHHHHHHhc
Q 011645 403 DLPEARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 403 Dl~~~~e~---~~~l~~~l~~~--g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+....+. .+.+.+.+... .+.++|++++ ++++++.++....
T Consensus 166 Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 166 DTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 99865432 23444444444 4557899999 9999998887665
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.91 E-value=2.9e-09 Score=118.41 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=84.5
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCC------Cc------cC------CCceeeeccceeccCCCCC-CccccCCce
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKP------DI------AD------YPFTTLMPNLGRLDGDPTL-GAEKYSSEA 329 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~------~i------a~------~pfTTl~p~~g~v~~~~~~-~~~~~~~~~ 329 (480)
+..+..|+|+|+..+|||||..+|....- .+ .+ .-+.|+......+.+.... ... +..+
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~--~~~i 87 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD--NYRV 87 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC--CEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC--CEEE
Confidence 45667899999999999999999863211 11 11 0122222222222211100 000 1268
Q ss_pred EEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcCh--
Q 011645 330 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-- 407 (480)
Q Consensus 330 ~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~-- 407 (480)
.|+||||+.+. .....+.++-||.+|+|||+..+...+....|...++. +.|.++++||+|.+..
T Consensus 88 NlIDTPGHvDF-------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 88 NVIDTPGHVDF-------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGANF 154 (709)
T ss_dssp EEECCCSCTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTCCH
T ss_pred EEEeCCCCccc-------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCccH
Confidence 99999999764 45567788889999999999988766665555544442 5899999999999754
Q ss_pred HHHHHHHHHHH
Q 011645 408 RDRLQSLTEEI 418 (480)
Q Consensus 408 ~e~~~~l~~~l 418 (480)
...++++.+.+
T Consensus 155 ~~~~~ei~~~l 165 (709)
T 4fn5_A 155 LRVVEQIKKRL 165 (709)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 34455555544
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.84 E-value=6.9e-09 Score=97.64 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=84.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCC------ccCCCceeeecc------ceeccCC-C-C--CC----c------cc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPFTTLMPN------LGRLDGD-P-T--LG----A------EK 324 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~------ia~~pfTTl~p~------~g~v~~~-~-~--~~----~------~~ 324 (480)
...+|+|+|.+|||||||+++|+..... +...+.++.+.. ...+..+ + . .. . ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4678999999999999999999865221 111111110000 0000000 0 0 00 0 00
Q ss_pred cCCceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCC-hhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 325 ~~~~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
....+.++|++|.+... ..| . ...+.++.|+|+..... ...+. ++ ..+|.++|+||+|
T Consensus 117 ~~~d~~~id~~g~i~~~-------~s~-~--~~~~~~~~v~~~~~~~~~~~~~~----~~-------~~~~~iiv~NK~D 175 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP-------ADF-D--LGTHKRIVVISTTEGDDTIEKHP----GI-------MKTADLIVINKID 175 (226)
T ss_dssp GGCSEEEEECCSCSSGG-------GGC-C--CSCSEEEEEEEGGGCTTTTTTCH----HH-------HTTCSEEEEECGG
T ss_pred CCCCEEEEeCCCCccCc-------chh-h--hccCcEEEEEecCcchhhHhhhh----hH-------hhcCCEEEEeccc
Confidence 01268889999954321 111 1 12456678888643221 11111 11 1478999999999
Q ss_pred CcChH-HHHHHHHHHHHh----cCceeeecccccCHHHHHHHHHHhc
Q 011645 404 LPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 404 l~~~~-e~~~~l~~~l~~----~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
+.... ...+.+.+.+.. ..+.++|++++.|++++++++....
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 176 LADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp GHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 87532 123334444432 3466889999999999999987654
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=1e-09 Score=108.96 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=38.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a 341 (480)
...+|+++|.||||||||+|+|++.+. .+++.|+||.+.....+ ...+.++||||+....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCC
Confidence 456899999999999999999998874 56899999988764332 2368999999998653
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.73 E-value=2.1e-08 Score=102.24 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=73.4
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccC----------CCCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|+.. ....|..+++.++++|||+|++ ....+++...+++++... +.+.+.|+++
T Consensus 162 ~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~-~~~~~~piiL 233 (340)
T 4fid_A 162 PFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN-EFLKGAVKLI 233 (340)
T ss_dssp EEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC-GGGTTSEEEE
T ss_pred eeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh-hccCCCeEEE
Confidence 478999999843 4566778889999999999998 334444444455555432 2235689999
Q ss_pred EEeCCCCcChH--------------------HHHHHHHHHH-------------------------HhcCceeeeccccc
Q 011645 398 VLNKIDLPEAR--------------------DRLQSLTEEI-------------------------LKIGCDKVTSETEL 432 (480)
Q Consensus 398 V~NK~Dl~~~~--------------------e~~~~l~~~l-------------------------~~~g~~~~sa~t~~ 432 (480)
|+||+|+.... +..+.+.+.+ ..+.+.+++|.+..
T Consensus 234 v~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~ 313 (340)
T 4fid_A 234 FLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS 313 (340)
T ss_dssp EEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred EEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence 99999986421 2222333344 12344577888888
Q ss_pred CHHHHHHHHHHhc
Q 011645 433 SSEDAVKSLSTEG 445 (480)
Q Consensus 433 Gi~~ll~~Ls~~~ 445 (480)
+++.+|+.+....
T Consensus 314 nv~~vF~~v~~~I 326 (340)
T 4fid_A 314 NIKRVFMLAVDVI 326 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776554
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=104.09 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=65.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC---ccC-CCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc---C
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD---IAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---K 345 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~---ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~---~ 345 (480)
+.|+|+|.+|||||||||.|++.... +.. .+.++.. ..+.+.-.. .+...++++|+||+....... .
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~-----~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQES-----NVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecC-----ccccccchhhhhhhhhccccchhhh
Confidence 34999999999999999999987421 111 2333333 222221111 111368999999985421100 0
Q ss_pred ----ccchhh---hh----------hhccCC---EEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 346 ----GLGRNF---LR----------HLRRTR---LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 346 ----gl~~~f---l~----------~i~~ad---~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
.+...| +. .+.+++ +++||+|+..+....+.. +...|. ...|+|+|+||+|..
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die-ilk~L~------~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV-TMKKLD------SKVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH-HHHHTC------SCSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH-HHHHHh------hCCCEEEEEcchhcc
Confidence 011111 11 112233 477788877655444433 222232 368999999999998
Q ss_pred ChHH
Q 011645 406 EARD 409 (480)
Q Consensus 406 ~~~e 409 (480)
...+
T Consensus 190 t~~E 193 (427)
T 2qag_B 190 SKSE 193 (427)
T ss_dssp CHHH
T ss_pred chHH
Confidence 7654
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.68 E-value=4.8e-08 Score=96.29 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=76.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc-c-------CCCceeeeccceeccCCCCCCccccCCceEEecCCccccccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i-a-------~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~ 344 (480)
+.|+|+|.+|||||||+|.|++..... + +.+.++.....+.+.-.. .+...++++|+||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence 479999999999999999999764321 1 112222222222221111 122468999999985422110
Q ss_pred C---cc----chhhhh--------------hhccCCEEEEecccC-CCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCC
Q 011645 345 K---GL----GRNFLR--------------HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (480)
Q Consensus 345 ~---gl----~~~fl~--------------~i~~ad~ll~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~ 402 (480)
. .+ ...+.. .+.++++.++++|.. .+....+.+ +...|.. ..++|+|+||+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence 0 00 011111 234678999999965 344444433 3445553 27899999999
Q ss_pred CCcChHHH---HHHHHHHHHhcCce
Q 011645 403 DLPEARDR---LQSLTEEILKIGCD 424 (480)
Q Consensus 403 Dl~~~~e~---~~~l~~~l~~~g~~ 424 (480)
|.....+. ...+.+.+...++.
T Consensus 151 D~lt~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99876442 23344445555544
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.58 E-value=5e-08 Score=106.11 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=61.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCCCCccCCCceeeeccceeccCC-CCCCccccCCceEEecCCccccccc-ccCccc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH-LGKGLG 348 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pfTTl~p~~g~v~~~-~~~~~~~~~~~~~l~DTPGlie~a~-~~~gl~ 348 (480)
....|+|+|.||||||||||+|++....+ ++++||...+.+.+.+. +. .......+.++||||+.+... ....-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~--~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPH--PKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEEC--SSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccc--ccCCCceEEEecCCCcCcccccchhHHH
Confidence 45679999999999999999999987555 67778776666664210 00 000124799999999986433 111111
Q ss_pred hhh-hhhhccCCEEEEecccCCCCChhhHH
Q 011645 349 RNF-LRHLRRTRLLVHVIDAAAENPVNDYR 377 (480)
Q Consensus 349 ~~f-l~~i~~ad~ll~VvD~s~~~~~~~~~ 377 (480)
..| +..+. ++ ++|+|+......+++.
T Consensus 114 ~~fala~ll-ss--~lv~n~~~~i~~~dl~ 140 (592)
T 1f5n_A 114 WIFALAVLL-SS--TFVYNSIGTINQQAMD 140 (592)
T ss_dssp HHHHHHHHH-CS--EEEEEEESCSSHHHHH
T ss_pred HHHHHHHHh-cC--eEEEECCCCccHHHHH
Confidence 112 22222 33 5666766655545444
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.53 E-value=2.5e-07 Score=92.34 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=74.1
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.+.+||| +.. ....+..+++.+|++|+|+|++++. .++.+..|..+++. .+.|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer-------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHR-------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCC-------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccc-------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 6899999 321 1222234678899999999999876 56777777777765 3689999999999986
Q ss_pred hHHH--HHHHHHHHHh-cCceeeecccccCHHHHHHHHHHh
Q 011645 407 ARDR--LQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 407 ~~e~--~~~l~~~l~~-~g~~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..+. .+.+.+.+.. ..+.++|++++.|+++++..+...
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 5431 2333333332 456789999999999999987643
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.50 E-value=3.9e-08 Score=100.74 Aligned_cols=110 Identities=10% Similarity=0.129 Sum_probs=75.6
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCC----------ChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|+.. ....|..+++.++++|||+|+++.+ .+++...+++++... +.+.+.|+|+
T Consensus 194 ~l~iwDt~GQe~-------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~-~~~~~~piiL 265 (353)
T 1cip_A 194 HFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSIIL 265 (353)
T ss_dssp EEEEEEECCSGG-------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEE
T ss_pred eEEEEeCCCchh-------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC-ccccCCcEEE
Confidence 689999999843 4556777889999999999999843 344555555555432 1234689999
Q ss_pred EEeCCCCcChH----------------HHHHHHHHHHH-------------hcCceeeecccccCHHHHHHHHHHhc
Q 011645 398 VLNKIDLPEAR----------------DRLQSLTEEIL-------------KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 398 V~NK~Dl~~~~----------------e~~~~l~~~l~-------------~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+||+|+.... ...++..+.+. .+.+.+++|.++.++.++|+++....
T Consensus 266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999985321 01122222221 12345889999999999999988665
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.45 E-value=1.3e-06 Score=91.19 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=85.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC----Cc-cCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccccccCccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~----~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~gl~ 348 (480)
.|+|+|.+|||||||+|+|++... .+ ....-+|.. +.+...+ ....++++|+||+... ....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~------~~~~ltv~D~~g~~~~----~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHP------NIPNVVFWDLPGIGST----NFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECS------SCTTEEEEECCCGGGS----SCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEecccc------ccCCeeehHhhcccch----HHHH
Confidence 799999999999999999998432 22 111112211 2221111 1136899999998532 1111
Q ss_pred hhhhhh--hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc------------ChHHHHHHH
Q 011645 349 RNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------------EARDRLQSL 414 (480)
Q Consensus 349 ~~fl~~--i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~------------~~~e~~~~l 414 (480)
..++.. +...+..++ ++... ...+. ..+...|.. .++|+++|+||.|+. ...+..+.+
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqr-v~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKND-IDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHH-HHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHH-HHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 223332 334455554 66543 12233 334445554 358999999999975 122233333
Q ss_pred HHHH----HhcC-----ceeeecc--cccCHHHHHHHHHHhcCcccc
Q 011645 415 TEEI----LKIG-----CDKVTSE--TELSSEDAVKSLSTEGGEADL 450 (480)
Q Consensus 415 ~~~l----~~~g-----~~~~sa~--t~~Gi~~ll~~Ls~~~~~~~~ 450 (480)
.+.. .+.+ +..++++ .+.+++++.+.+...+.+...
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 3332 2322 2344664 344699999999888765543
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=1.3e-07 Score=92.79 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=39.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC-CccCCCceeeeccceeccCCCCCCccccCCceEEecCCcccccc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a 341 (480)
.+|+++|.||+|||||+|+|.+... .+++.|++|.......+ ...+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-----------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-----------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-----------CCCEEEEECCCcccCc
Confidence 6899999999999999999998775 55888898876543322 1368999999998653
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.39 E-value=8.6e-08 Score=98.48 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=71.4
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|+.. ....|..+++.++++|||+|+++ ...+++...+++++... ..+.+.|+|+
T Consensus 202 ~l~i~Dt~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~~~~piIL 273 (362)
T 1zcb_A 202 PFKMVDVGGQRS-------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSIIL 273 (362)
T ss_dssp EEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEE
T ss_pred EEEEEeccchhh-------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhhCCCCEEE
Confidence 689999999843 34556677889999999999998 33455555555555532 1234689999
Q ss_pred EEeCCCCcChH-----------------HHHHHHHH----HHH---------hcCceeeecccccCHHHHHHHHHHhc
Q 011645 398 VLNKIDLPEAR-----------------DRLQSLTE----EIL---------KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 398 V~NK~Dl~~~~-----------------e~~~~l~~----~l~---------~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
|+||+|+.... ...++..+ .+. .+.+.+++|.+++++.++|+++....
T Consensus 274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 99999986311 11122222 111 12345789999999999999987655
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.36 E-value=4.8e-07 Score=96.73 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=83.7
Q ss_pred ecceEEEecCCCCChHHHHHHHh------cCCCCc-cCCCceee----------eccceeccCCCCCCc----------c
Q 011645 271 VVADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTTL----------MPNLGRLDGDPTLGA----------E 323 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt------~~~~~i-a~~pfTTl----------~p~~g~v~~~~~~~~----------~ 323 (480)
....|+|+|.+||||||+++.|. +.++.+ +.-++... ....-.+........ .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998 555433 21111100 000000000000000 0
Q ss_pred c-cCCceEEecCCcccccccccCccchh---hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCE-EEE
Q 011645 324 K-YSSEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVV 398 (480)
Q Consensus 324 ~-~~~~~~l~DTPGlie~a~~~~gl~~~---fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~-ivV 398 (480)
. -...++|+||||..... ..+... +.+ +..+|.+++|+|++... +.... ...+.. ..|+ ++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~-~i~pd~vllVvDa~~g~--~~~~~-a~~~~~------~~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE---DSLFEEMLQVAN-AIQPDNIVYVMDASIGQ--ACEAQ-AKAFKD------KVDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC---HHHHHHHHHHHH-HHCCSEEEEEEETTCCT--THHHH-HHHHHH------HHCCCCEE
T ss_pred HHCCCcEEEEeCCCCcccc---hhHHHHHHHHHh-hhcCceEEEEEeccccc--cHHHH-HHHHHh------hcCceEEE
Confidence 0 12379999999986421 111111 112 22689999999998753 22222 223332 1464 899
Q ss_pred EeCCCCcChHHHHHHHHHHHHhcCc------------------eeeecccccC-HHHHHHHHHHh
Q 011645 399 LNKIDLPEARDRLQSLTEEILKIGC------------------DKVTSETELS-SEDAVKSLSTE 444 (480)
Q Consensus 399 ~NK~Dl~~~~e~~~~l~~~l~~~g~------------------~~~sa~t~~G-i~~ll~~Ls~~ 444 (480)
+||+|..........+.+.+. .++ ..+++..+.| +.++++++.+.
T Consensus 247 lNK~D~~~~~g~~l~~~~~~g-~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALSAVAATK-SPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHHHHHHHC-CCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHHHHHHhC-CCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999998754332222322221 111 1345567777 88888887654
No 216
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.29 E-value=4.6e-07 Score=92.79 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=74.6
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccC----------CCCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|+.. ....+..+++.++++|+|+|++ +...+++...+++++.... ...+.|+++
T Consensus 184 ~l~iwDtaGQe~-------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiL 255 (354)
T 2xtz_A 184 VYRLFDVGGQRN-------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFML 255 (354)
T ss_dssp EEEEEEECCSTT-------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEE
T ss_pred eeEEEECCCchh-------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEE
Confidence 689999999843 4555677788999999999998 4444555555655555321 234689999
Q ss_pred EEeCCCCcChH-------------------------HHHHHH-HHHHHh------------cC--ceeeecccccCHHHH
Q 011645 398 VLNKIDLPEAR-------------------------DRLQSL-TEEILK------------IG--CDKVTSETELSSEDA 437 (480)
Q Consensus 398 V~NK~Dl~~~~-------------------------e~~~~l-~~~l~~------------~g--~~~~sa~t~~Gi~~l 437 (480)
|+||+|+.... +....+ .+.+.. .. +.+++|.++++++++
T Consensus 256 vgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v 335 (354)
T 2xtz_A 256 FLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335 (354)
T ss_dssp EEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred EEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence 99999985321 111111 222211 12 368999999999999
Q ss_pred HHHHHHhc
Q 011645 438 VKSLSTEG 445 (480)
Q Consensus 438 l~~Ls~~~ 445 (480)
|+++....
T Consensus 336 F~~v~~~I 343 (354)
T 2xtz_A 336 FKLVDETL 343 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=83.79 Aligned_cols=115 Identities=11% Similarity=-0.018 Sum_probs=65.5
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHh-hCCC--CCCCCEEEEEeCC-C
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPD--YLERPFIVVLNKI-D 403 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~-~~~~--l~~kp~ivV~NK~-D 403 (480)
++.+..+||-.+.. -...++..|..|++.+|++|||||+++.+..+..+.+ .+|.. ..++ +.+.|++|++||. |
T Consensus 97 k~~~~~~~~~~~~G-GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL-~eL~~mL~ee~~L~gapLLVlANKqqD 174 (227)
T 3l82_B 97 KMFSRHNEGDDQQG-SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQG 174 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHH-HHHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred hcccccCCCccccC-cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHH-HHHHHHhcchhhhCCCeEEEEeCCCcC
Confidence 34556666521100 1134666788889999999999999987655433333 23332 2332 3678999999995 7
Q ss_pred CcChHHHHHHHHHHHH------hcCceeeecccccCHHHHHHHHHHhc
Q 011645 404 LPEARDRLQSLTEEIL------KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 404 l~~~~e~~~~l~~~l~------~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++.+.. ..++.+.+. ...+..|+|.+++|+.+.++||+...
T Consensus 175 lp~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 175 DVKRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TSCBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred ccCCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 775422 223333321 22456899999999999999998665
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.26 E-value=8.6e-07 Score=92.22 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=76.6
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCC----------CCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|... ....|..+++.++++|||+|+++ ...++....|++++.... ...+.|+++
T Consensus 218 ~l~iwDtaGQe~-------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiL 289 (402)
T 1azs_C 218 NFHMFDVGGQRD-------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVIL 289 (402)
T ss_dssp EEEEEEECCSGG-------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEE
T ss_pred cceecccchhhh-------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEE
Confidence 588999999843 45567778899999999999998 555666666766666431 235689999
Q ss_pred EEeCCCCcChHH----------------------------------HHHHH-HHHHHh-----------cCceeeecccc
Q 011645 398 VLNKIDLPEARD----------------------------------RLQSL-TEEILK-----------IGCDKVTSETE 431 (480)
Q Consensus 398 V~NK~Dl~~~~e----------------------------------~~~~l-~~~l~~-----------~g~~~~sa~t~ 431 (480)
|+||+|+..... ....+ ...+.. +.+.+++|.+.
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 999999853211 11111 111111 22347899999
Q ss_pred cCHHHHHHHHHHhc
Q 011645 432 LSSEDAVKSLSTEG 445 (480)
Q Consensus 432 ~Gi~~ll~~Ls~~~ 445 (480)
+++.++|+.+....
T Consensus 370 ~nV~~vF~~v~~~I 383 (402)
T 1azs_C 370 ENIRRVFNDCRDII 383 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987554
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.21 E-value=4.6e-06 Score=83.26 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=65.0
Q ss_pred hhhccCCEEEEecccCCCC-ChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH--HHHHHHHHHHhcC--ceeee
Q 011645 353 RHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIG--CDKVT 427 (480)
Q Consensus 353 ~~i~~ad~ll~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e--~~~~l~~~l~~~g--~~~~s 427 (480)
.++..+|++++|+|+++++ +.+.++.++.++.. .++|.++|+||+|+.+..+ ..+++.+.+...+ +.++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEE
Confidence 4678899999999999875 56666666666664 4689999999999986542 2455555555555 45789
Q ss_pred cccccCHHHHHHHHHH
Q 011645 428 SETELSSEDAVKSLST 443 (480)
Q Consensus 428 a~t~~Gi~~ll~~Ls~ 443 (480)
++++.|++++++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999987653
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.17 E-value=2.6e-06 Score=84.39 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=68.6
Q ss_pred EecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHH
Q 011645 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 410 (480)
Q Consensus 331 l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~ 410 (480)
+-+.||+... ..++++++++++|++++|+|+..+...... ++..+. .++|.++|+||+|+.+. +.
T Consensus 3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l---~~kp~ilVlNK~DL~~~-~~ 67 (282)
T 1puj_A 3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL---KNKPRIMLLNKADKADA-AV 67 (282)
T ss_dssp ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC---SSSCEEEEEECGGGSCH-HH
T ss_pred CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH---CCCCEEEEEECcccCCH-HH
Confidence 4567888542 345788999999999999999987654431 223332 36999999999999874 44
Q ss_pred HHHHHHHHHhcC--ceeeecccccCHHHHHHHHHHhc
Q 011645 411 LQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 411 ~~~l~~~l~~~g--~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
.+.+.+.+...+ +..+++.++.|++++++.+.+..
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 566666666544 44779999999999998776544
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.14 E-value=3.3e-06 Score=88.62 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=65.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcC------CCCc-cCCCc------------------------eeeeccce---eccCCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYPF------------------------TTLMPNLG---RLDGDP 318 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~------~~~i-a~~pf------------------------TTl~p~~g---~v~~~~ 318 (480)
..|+|+|.+||||||+++.|... ++.+ +.-++ +|.+|... .+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~-- 177 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK-- 177 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH--
Confidence 46999999999999999999763 2221 11111 22222100 0000
Q ss_pred CCCccccCCceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCC-C-
Q 011645 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P- 394 (480)
Q Consensus 319 ~~~~~~~~~~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k-p- 394 (480)
.. ...++|+||||..... ..+... ....+..+|.+++|+|+.... +.. ..+..+.. .. |
T Consensus 178 ---~~--~~D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~----~~~~~~~~---~~~~i 240 (432)
T 2v3c_C 178 ---FK--KADVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAG----IQAKAFKE---AVGEI 240 (432)
T ss_dssp ---TS--SCSEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHH----HHHHHHHT---TSCSC
T ss_pred ---hh--CCCEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHH----HHHHHHhh---cccCC
Confidence 01 1368999999986421 111111 112234689999999997542 222 22333332 24 5
Q ss_pred EEEEEeCCCCcCh
Q 011645 395 FIVVLNKIDLPEA 407 (480)
Q Consensus 395 ~ivV~NK~Dl~~~ 407 (480)
..+|+||+|....
T Consensus 241 ~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 241 GSIIVTKLDGSAK 253 (432)
T ss_dssp EEEEEECSSSCST
T ss_pred eEEEEeCCCCccc
Confidence 8999999998653
No 222
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.08 E-value=4.7e-06 Score=82.92 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=67.8
Q ss_pred CccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHH-HhhCCC--CCCCCEEEEEeC-CCCcChHHHHHHHHHHHH-
Q 011645 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPD--YLERPFIVVLNK-IDLPEARDRLQSLTEEIL- 419 (480)
Q Consensus 345 ~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL-~~~~~~--l~~kp~ivV~NK-~Dl~~~~e~~~~l~~~l~- 419 (480)
..++..|..+++.+|++|||||+++.+..+..+.+. +| ....++ +.+.|++|.+|| .|++.+.. ..++.+.+.
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~-eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L 275 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS-HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHL 275 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHH-HHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHH-HHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCC
Confidence 346777888899999999999999977655333222 22 112211 357899999997 58876532 223333321
Q ss_pred -----hcCceeeecccccCHHHHHHHHHHhc
Q 011645 420 -----KIGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 420 -----~~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
...+..|+|.+++|+.+.++||+...
T Consensus 276 ~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 276 NLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred ccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 22456899999999999999999776
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=5.4e-06 Score=90.57 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.|+|+|..|||||||+++|++..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999864
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.01 E-value=1.4e-05 Score=83.99 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=75.0
Q ss_pred cceEEEecCCCCChHHHHHHHhc------CCCCc-cCCCcee--------eeccce--eccCCCCCCcc-----------
Q 011645 272 VADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFTT--------LMPNLG--RLDGDPTLGAE----------- 323 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~------~~~~i-a~~pfTT--------l~p~~g--~v~~~~~~~~~----------- 323 (480)
..-|+++|.+||||||++..|.. .++.+ +.-++.. .....+ .+.......+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999973 33322 1111100 000000 01100000000
Q ss_pred ccCCceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeC
Q 011645 324 KYSSEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (480)
Q Consensus 324 ~~~~~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK 401 (480)
.-...++|+||||..... ..+... -+..+..+|.+++|+|++... +... ....+.. .-.+..+|+||
T Consensus 180 ~~~~DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~-~a~~f~~-----~~~i~gVIlTK 248 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYN-QALAFKE-----ATPIGSIIVTK 248 (443)
T ss_dssp HTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHH-HHHHHHH-----SCTTEEEEEEC
T ss_pred hCCCCEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHH-HHHHHHh-----hCCCeEEEEEC
Confidence 001368999999974321 111111 122334589999999998642 2222 2233332 12467899999
Q ss_pred CCCcChHHHHHHHHHHHHhcCceeeecccccCH
Q 011645 402 IDLPEARDRLQSLTEEILKIGCDKVTSETELSS 434 (480)
Q Consensus 402 ~Dl~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi 434 (480)
+|.......+..+ ....+.+-..+.+++++
T Consensus 249 lD~~~~gG~~ls~---~~~~g~PI~fig~Ge~v 278 (443)
T 3dm5_A 249 LDGSAKGGGALSA---VAATGAPIKFIGTGEKI 278 (443)
T ss_dssp CSSCSSHHHHHHH---HHTTCCCEEEEECSSST
T ss_pred CCCcccccHHHHH---HHHHCCCEEEEEcCCCh
Confidence 9997654332222 33344443333355544
No 225
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.98 E-value=2.1e-06 Score=86.90 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=72.9
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccC-------C---CCChhhHHHHHHHHHhhCCCCCCCCEEE
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-------A---ENPVNDYRTVKEELRMYNPDYLERPFIV 397 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s-------~---~~~~~~~~~l~~eL~~~~~~l~~kp~iv 397 (480)
.+.+|||+|+.. ....|..+++.++++|||+|++ + ...+++...+++++... +.+.+.|+++
T Consensus 168 ~l~iwDtgGQe~-------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~-~~~~~~~iiL 239 (327)
T 3ohm_A 168 IFRMVDVGGQRS-------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVIL 239 (327)
T ss_dssp EEEEEEECCSHH-------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-GGGTTCEEEE
T ss_pred eeEEEEcCCchh-------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-hccCCceEEE
Confidence 689999999843 4556777889999999999776 2 23333344444444321 2235689999
Q ss_pred EEeCCCCcChH---------------------HHHHHHHHHHHh--------cCceeeecccccCHHHHHHHHHHhc
Q 011645 398 VLNKIDLPEAR---------------------DRLQSLTEEILK--------IGCDKVTSETELSSEDAVKSLSTEG 445 (480)
Q Consensus 398 V~NK~Dl~~~~---------------------e~~~~l~~~l~~--------~g~~~~sa~t~~Gi~~ll~~Ls~~~ 445 (480)
++||+|+.... +..+-+...+.. +...+++|.+..+++.+|+.+....
T Consensus 240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999986421 111222222221 2345789999999999999987665
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.90 E-value=1.5e-05 Score=81.71 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=61.7
Q ss_pred hhhhhh-ccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHH-HHHHHHHhcCc-
Q 011645 350 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQ-SLTEEILKIGC- 423 (480)
Q Consensus 350 ~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~-~l~~~l~~~g~- 423 (480)
++++++ ++++++++|+|+++... .+..++..+. .++|+++|+||+|+.... +.+. .+.+.+...++
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 456666 78899999999997542 2334445443 368999999999997642 2233 33344566665
Q ss_pred ----eeeecccccCHHHHHHHHHHh
Q 011645 424 ----DKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 424 ----~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..+|++++.|++++++.+...
T Consensus 135 ~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 135 PVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp CSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999998654
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.85 E-value=2.1e-05 Score=80.71 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=60.6
Q ss_pred hhhhhhc-cCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChH---HHHHH-HHHHHHhcCc-
Q 011645 350 NFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIGC- 423 (480)
Q Consensus 350 ~fl~~i~-~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~---e~~~~-l~~~l~~~g~- 423 (480)
++++++. .++++++|+|+++. ...+..+|..+. .++|+++|+||+|+.... +.+.+ +.......++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~-----~~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDF-----NGSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSH-----HHHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCcEEEEEEECCCC-----cccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 4566665 45699999999863 244555666653 368999999999997543 22333 3334455554
Q ss_pred ----eeeecccccCHHHHHHHHHHh
Q 011645 424 ----DKVTSETELSSEDAVKSLSTE 444 (480)
Q Consensus 424 ----~~~sa~t~~Gi~~ll~~Ls~~ 444 (480)
..+|++++.|++++++.+...
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhh
Confidence 477999999999999998653
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.78 E-value=1.7e-05 Score=77.72 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=61.8
Q ss_pred chhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHHHHHHHHHHHHhc--Ccee
Q 011645 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDK 425 (480)
Q Consensus 348 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~ 425 (480)
.++++++++++|++++|+|+..+...... ++. + + ++|.++|+||+|+.+. +..+.+.+.+... .+ .
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l---l-~k~~iivlNK~DL~~~-~~~~~~~~~~~~~g~~v-~ 79 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F---S-RKETIILLNKVDIADE-KTTKKWVEFFKKQGKRV-I 79 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C---T-TSEEEEEEECGGGSCH-HHHHHHHHHHHHTTCCE-E
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h---c-CCCcEEEEECccCCCH-HHHHHHHHHHHHcCCeE-E
Confidence 35678999999999999999976544321 111 1 1 6899999999999874 3455566666544 45 8
Q ss_pred eecccccCHHHHHHHHHH
Q 011645 426 VTSETELSSEDAVKSLST 443 (480)
Q Consensus 426 ~sa~t~~Gi~~ll~~Ls~ 443 (480)
+++.++.|++++++.+..
T Consensus 80 iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 80 TTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ECCTTSCHHHHHHHHCCC
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 899999999999887643
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.65 E-value=3.8e-05 Score=80.58 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=41.3
Q ss_pred CceEEecCCcccccccccCccchh---hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCC
Q 011645 327 SEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (480)
Q Consensus 327 ~~~~l~DTPGlie~a~~~~gl~~~---fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~D 403 (480)
..++|+||||..... ....+... +.+. ...+.+++|+|+.... +. ..+...+... -.+..+|+||+|
T Consensus 180 ~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq--~a-~~~a~~f~~~-----~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYG-EETKLLEEMKEMYDV-LKPDDVILVIDASIGQ--KA-YDLASRFHQA-----SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSC-CTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGG--GG-HHHHHHHHHH-----CSSEEEEEECGG
T ss_pred CCEEEEECCCCcccc-CCHHHHHHHHHHHHh-hCCcceEEEEeCccch--HH-HHHHHHHhcc-----cCCcEEEEeccc
Confidence 368999999963300 01111111 1222 2468999999998642 22 2233333321 246789999999
Q ss_pred CcChHH
Q 011645 404 LPEARD 409 (480)
Q Consensus 404 l~~~~e 409 (480)
......
T Consensus 250 ~~a~~G 255 (433)
T 3kl4_A 250 GTAKGG 255 (433)
T ss_dssp GCSCHH
T ss_pred ccccch
Confidence 875433
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.60 E-value=0.0002 Score=71.33 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=50.3
Q ss_pred ceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEEeCCCC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL 404 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~NK~Dl 404 (480)
.++|+||||..... ....+... .+..+..+|.+++|+|+... .+.+..+ ..+.. ..+ ..+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~~------~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFNQ------ASKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHHH------TCTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHHh------hCCCCEEEEeCCCC
Confidence 68999999985410 00011110 01234568999999998743 2333322 22322 244 7889999998
Q ss_pred cChHHHHHHHHHHHHhcCceeeecccccCHH
Q 011645 405 PEARDRLQSLTEEILKIGCDKVTSETELSSE 435 (480)
Q Consensus 405 ~~~~e~~~~l~~~l~~~g~~~~sa~t~~Gi~ 435 (480)
...... ........+.+-....++++++
T Consensus 252 ~~~~g~---~~~~~~~~~~pi~~i~~Ge~v~ 279 (297)
T 1j8m_F 252 TAKGGG---ALSAVAATGATIKFIGTGEKID 279 (297)
T ss_dssp CTTHHH---HHHHHHTTTCCEEEEECSSSTT
T ss_pred CcchHH---HHHHHHHHCcCEEEEeCCCChh
Confidence 654332 2233444444433333555553
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.56 E-value=4e-05 Score=80.73 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=44.0
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC---------------CCCccCCCceeeeccceeccCCC-CC--CccccCCceEEe
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGDP-TL--GAEKYSSEATLA 332 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~---------------~~~ia~~pfTTl~p~~g~v~~~~-~~--~~~~~~~~~~l~ 332 (480)
.+.-|+|+|.+++|||||||+|.+. +..+-....||...+.|++.... .. ....-...++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4566999999999999999999864 22332233366666667654321 00 000001368999
Q ss_pred cCCccccc
Q 011645 333 DLPGLIEG 340 (480)
Q Consensus 333 DTPGlie~ 340 (480)
||||+.+.
T Consensus 146 DTeG~~~~ 153 (447)
T 3q5d_A 146 DTQGTFDS 153 (447)
T ss_dssp EEECCCSS
T ss_pred cCCccccc
Confidence 99998653
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.53 E-value=0.00026 Score=66.53 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=35.2
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-Cc-cCCCceeeeccceeccC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-DI-ADYPFTTLMPNLGRLDG 316 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~i-a~~pfTTl~p~~g~v~~ 316 (480)
-|+|+|++|||||||+++|.+..+ .+ ...+.||..|..|.+++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G 65 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG 65 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeecc
Confidence 589999999999999999998765 23 56778999888877543
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.05 E-value=0.00047 Score=69.64 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.--|+|+|++|||||||++.|.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999864
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00024 Score=71.19 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.6
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
..-.++|+|.+|||||||+|+|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34479999999999999999999754
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.91 E-value=0.00047 Score=70.51 Aligned_cols=56 Identities=27% Similarity=0.219 Sum_probs=35.2
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC-C-ccCCC---c----eeeeccceeccCCCCCCccccCCceEEecCCccccc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP-D-IADYP---F----TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~-~-ia~~p---f----TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~ 340 (480)
.++|+|.+|||||||+|+|.+... . .+... + ||.....+.+. ....++||||+.+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-----------q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-----------HGGDVIDSPGVREF 281 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-----------TSCEEEECHHHHTC
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-----------CCCEecCcccHHHh
Confidence 689999999999999999998653 2 22221 1 33333333331 23467999998663
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.90 E-value=0.0014 Score=65.19 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.2
Q ss_pred cceEEEecCCCCChHHHHHHHhc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..-|+|+|.+||||||++..|..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999864
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.89 E-value=0.00054 Score=72.94 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.++..--|+|+|..|||||||++.|.+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 4455566667999999999999999999763
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.83 E-value=0.0028 Score=66.37 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred cceEEEecCCCCChHHHHHHHh-------cCCCCc-cCCCceee--------e--ccceeccCCCCCC----------cc
Q 011645 272 VADVGLVGLPNAGKSTLLAAIT-------HAKPDI-ADYPFTTL--------M--PNLGRLDGDPTLG----------AE 323 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt-------~~~~~i-a~~pfTTl--------~--p~~g~v~~~~~~~----------~~ 323 (480)
...|+++|.+|+||||+...|. +.++.+ ..-++.+. . ..+-.+....... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999997 444332 11111110 0 0000111000000 00
Q ss_pred c-cCCceEEecCCcccccccccCccchh--hhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCC-EEEEE
Q 011645 324 K-YSSEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVL 399 (480)
Q Consensus 324 ~-~~~~~~l~DTPGlie~a~~~~gl~~~--fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp-~ivV~ 399 (480)
. -...++|+||||..... ..+... ....+..++.+++|+|+.... +.+.. ...+.. ..+ .-+|+
T Consensus 180 ~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~-~~~f~~------~l~i~gvVl 247 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANT-AKAFNE------ALPLTGVVL 247 (433)
T ss_dssp HHTTCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHH-HHHHHH------HSCCCCEEE
T ss_pred HhCCCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHH-HHHHhc------cCCCeEEEE
Confidence 0 02369999999975321 111111 112344688999999997542 22222 222321 123 35789
Q ss_pred eCCCCcCh
Q 011645 400 NKIDLPEA 407 (480)
Q Consensus 400 NK~Dl~~~ 407 (480)
||+|....
T Consensus 248 nK~D~~~~ 255 (433)
T 2xxa_A 248 TKVDGDAR 255 (433)
T ss_dssp ECTTSSSC
T ss_pred ecCCCCcc
Confidence 99997643
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.79 E-value=0.0015 Score=65.63 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=23.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhc
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+.+..+...-|+|+|.+|+||||++..|..
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444445556799999999999999999864
No 240
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.77 E-value=0.0026 Score=58.07 Aligned_cols=67 Identities=4% Similarity=-0.102 Sum_probs=46.9
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCc
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~ 405 (480)
.++|+|||+... ......+..+|.+++|++.+... .....+.+.++.........++.+|+|++|..
T Consensus 77 D~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 77 DFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 689999998642 23345566799999999988655 55666667776543212245679999999954
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.70 E-value=0.0016 Score=64.71 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
--++|+|++|||||||+|+|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 358999999999999999999 53
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.67 E-value=0.0012 Score=65.90 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.7
Q ss_pred heecceEEEecCCCCChHHHHHHHhc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.+...-|+|+|.+|+||||++..|..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 34445689999999999999999875
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.56 E-value=0.0017 Score=64.93 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=53.7
Q ss_pred hhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH---HHHHHHHHHHhcCce--eeec
Q 011645 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD--KVTS 428 (480)
Q Consensus 354 ~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e---~~~~l~~~l~~~g~~--~~sa 428 (480)
.+..+|.+++|+|+..++.... .+...|.... ..++|.++|+||+|+.+..+ .++.+.+.+...++. .+++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence 4678999999999987654333 2333332110 13689999999999987643 356777777665543 4566
Q ss_pred ccccCHHHHHHH
Q 011645 429 ETELSSEDAVKS 440 (480)
Q Consensus 429 ~t~~Gi~~ll~~ 440 (480)
.++.|++++++.
T Consensus 159 ~~~~g~~~L~~~ 170 (307)
T 1t9h_A 159 KDQDSLADIIPH 170 (307)
T ss_dssp HHHTTCTTTGGG
T ss_pred CCCCCHHHHHhh
Confidence 666666655543
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.51 E-value=0.0053 Score=61.16 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
--|+|+|+.|||||||++.|.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999975
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.46 E-value=0.0024 Score=63.33 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
--++|+|++|||||||||+|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 358999999999999999999764
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.34 E-value=0.0025 Score=57.88 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=29.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC-c-cCCCceeeeccceecc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD 315 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~-i-a~~pfTTl~p~~g~v~ 315 (480)
-|+|+|++|||||||++.|.+..+. . .....||..|..+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~ 50 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEEN 50 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCB
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccC
Confidence 4899999999999999999876441 2 4456677777665543
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.21 E-value=0.015 Score=59.33 Aligned_cols=83 Identities=22% Similarity=0.179 Sum_probs=52.9
Q ss_pred hccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcChHH--HHHHHHHHHHhcCce--eeeccc
Q 011645 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCD--KVTSET 430 (480)
Q Consensus 355 i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~~~e--~~~~l~~~l~~~g~~--~~sa~t 430 (480)
++.+|.+++| |+..+.+.. ..+...|.... ..++|.++|+||+|+.+..+ ..+.+...+...++. .+++.+
T Consensus 128 ~anvD~v~iv-~a~~P~~~~--~~i~r~L~~a~--~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL--NIIDRYLVGCE--TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH--HHHHHHHHHHH--HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEE-EeCCCCCCH--HHHHHHHHHHH--hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5789999866 555543322 22322222100 02578899999999987543 255666677776654 668889
Q ss_pred ccCHHHHHHHHH
Q 011645 431 ELSSEDAVKSLS 442 (480)
Q Consensus 431 ~~Gi~~ll~~Ls 442 (480)
+.|++++...+.
T Consensus 203 ~~gl~~L~~~~~ 214 (358)
T 2rcn_A 203 QDGLKPLEEALT 214 (358)
T ss_dssp TBTHHHHHHHHT
T ss_pred CcCHHHHHHhcC
Confidence 999998887653
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.20 E-value=0.0033 Score=58.29 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=35.6
Q ss_pred EEEecCCCCChHHHHHHHhcCCCC-c-cCCCceeeeccceeccCC
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD 317 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~-i-a~~pfTTl~p~~g~v~~~ 317 (480)
|+|+|++|||||||+++|....+. + -..+.||..|..|.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~ 48 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence 789999999999999999877653 3 567889998888877654
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0028 Score=58.69 Aligned_cols=42 Identities=36% Similarity=0.367 Sum_probs=29.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceec
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRL 314 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v 314 (480)
..++|+|++|||||||++.|.+..+.. .+...||..|..|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~ 48 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE 48 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc
Confidence 358999999999999999998754321 233345555655554
No 250
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.93 E-value=0.031 Score=51.99 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred ceEEecCCcc-cccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGl-ie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+|||+. ... .....+..+|.+|++++.+.. .......+.+.++... ..++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG----NNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC----SSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc----CCCEEEEEEecCCcc
Confidence 6899999986 321 234556779999999987642 2334444555555432 456889999999764
Q ss_pred -hHHHHHHHHHHHHhcCc
Q 011645 407 -ARDRLQSLTEEILKIGC 423 (480)
Q Consensus 407 -~~e~~~~l~~~l~~~g~ 423 (480)
.. ..++.+.+.+++.
T Consensus 135 ~~~--~~~~~~~l~~~g~ 150 (209)
T 3cwq_A 135 SKD--GDEARQLLTTAGL 150 (209)
T ss_dssp SCH--HHHHHHHHHHTTC
T ss_pred chH--HHHHHHHHHHcCC
Confidence 22 2334444444443
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.92 E-value=0.0097 Score=58.87 Aligned_cols=25 Identities=32% Similarity=0.201 Sum_probs=20.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+++|.+|+||||++..|...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999998653
No 252
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.84 E-value=0.014 Score=60.94 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=20.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhc
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
...-|+++|.+|+||||++..|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999864
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.76 E-value=0.0044 Score=56.45 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=29.6
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCc--cCCCceeeeccceecc
Q 011645 275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLD 315 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~~~~i--a~~pfTTl~p~~g~v~ 315 (480)
|+|+|++|||||||++.|.+..+.. .....||..|..|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~ 46 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVN 46 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCB
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccC
Confidence 7899999999999999999765411 2334566666666543
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.71 E-value=0.0083 Score=55.75 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.0
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC-c-cCCCceeeeccceec
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRL 314 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~-i-a~~pfTTl~p~~g~v 314 (480)
-|+|+|++|||||||++.|.+..+. . .....||..|..+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~ 52 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQ 52 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCccc
Confidence 4899999999999999999977542 2 445567776665543
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.55 E-value=0.0078 Score=55.55 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=30.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCC-c-cCCCceeeeccceecc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD 315 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~-i-a~~pfTTl~p~~g~v~ 315 (480)
.-|+|+|++|||||||.+.|...-+. + -....||..+..+.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~ 57 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETN 57 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCB
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCC
Confidence 35899999999999999999865432 2 2345677766655543
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.44 E-value=0.0069 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred eEEEecCCCCChHHHHHHHhcCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.++|+|++|||||||++.|++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.38 E-value=0.0083 Score=56.88 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355666777789999999999999999999863
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.35 E-value=0.0069 Score=56.90 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=23.1
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...--++|+|++|||||||++.|.+..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455555579999999999999999999864
No 259
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.26 E-value=0.065 Score=52.43 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=41.4
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEE-EEEeCCCC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 404 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~i-vV~NK~Dl 404 (480)
.++|+|||+.... ..+...+..||.+|+|++.+. ........+.+.++.... ..+.+++ +|+|+++.
T Consensus 158 D~ViiD~p~~~~~--------~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 158 DVVIFDVLGDVVC--------GGFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECCSSCC--------GGGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSC
T ss_pred CEEEEeCCCccch--------HHHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCc
Confidence 6899999875431 122345677999999998763 223444445566654321 1234444 89999984
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.24 E-value=0.0097 Score=56.87 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.3
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...--++|+|+.|||||||++.|++-.
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355566666689999999999999999999863
No 261
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.23 E-value=0.0071 Score=56.87 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=25.9
Q ss_pred ehhheecceEEEecCCCCChHHHHHHHh-cCCCCc-cCCCceeeecccee
Q 011645 266 ELILRVVADVGLVGLPNAGKSTLLAAIT-HAKPDI-ADYPFTTLMPNLGR 313 (480)
Q Consensus 266 ~l~lk~~~~V~lvG~pNaGKSSLlnaLt-~~~~~i-a~~pfTTl~p~~g~ 313 (480)
.+.++..--|+|+|++|||||||++.|. +..+.+ .....+|..|..+.
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~ 70 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGE 70 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTC
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccc
Confidence 3445556679999999999999999999 764322 33334444454443
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.17 E-value=0.01 Score=57.36 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=28.1
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355667777789999999999999999999863
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.16 E-value=0.0097 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKP 297 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~ 297 (480)
--|+|+|++|||||||++.|.+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999997643
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.12 E-value=0.011 Score=56.11 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|+.|||||||++.|++-.
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666777789999999999999999999863
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=56.50 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.4
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...-.++|+|+.|||||||++.|++-.
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355566666689999999999999999999863
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.10 E-value=0.01 Score=53.36 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.4
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhc
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+.+...--++|+|++|||||||++++..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3444555799999999999999998653
No 267
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.09 E-value=0.011 Score=56.65 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...-.++|+|+.|||||||++.|++-.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355566666689999999999999999999864
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.08 E-value=0.012 Score=56.75 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=28.2
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|+.|||||||++.|++-.
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455667777789999999999999999999863
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.04 E-value=0.012 Score=57.29 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|+.|||||||++.|++-.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355666677789999999999999999999863
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.04 E-value=0.011 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355666777789999999999999999999863
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.04 E-value=0.012 Score=57.41 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355666777789999999999999999999863
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.03 E-value=0.012 Score=57.78 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=28.2
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.++..--++|+|+.|||||||++.|++-.
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456667777789999999999999999999864
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.02 E-value=0.011 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.5
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.0093 Score=56.47 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=28.3
Q ss_pred eEEEecCCCCChHHHHHHHhcCCCC--c-cCCCceeeecc
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPN 310 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~~--i-a~~pfTTl~p~ 310 (480)
-++|+|+.|||||||++.|.+..+. + .....||..+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~ 57 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 57 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC
Confidence 6899999999999999999987542 3 44556665543
No 275
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.00 E-value=0.013 Score=56.16 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355666677789999999999999999999863
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.00 E-value=0.013 Score=56.31 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.7
Q ss_pred EeeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 263 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 263 ~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
..+.++++. --++|+|+.|||||||++.|++-.
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345666777 789999999999999999999863
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.97 E-value=0.013 Score=57.22 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.9
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+++...--++|+|+.|||||||++.|++-.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45566666689999999999999999999863
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.94 E-value=0.014 Score=56.26 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=27.3
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+++...--++|+|+.|||||||++.|++-
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35566677778999999999999999999985
No 279
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.91 E-value=0.014 Score=57.45 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.6
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|+.|||||||++.|++-.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355566666789999999999999999999863
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.89 E-value=0.014 Score=56.38 Aligned_cols=33 Identities=39% Similarity=0.369 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355666677789999999999999999999863
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.85 E-value=0.014 Score=56.59 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...-.++|+|+.|||||||++.|++-.
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 355666667789999999999999999999863
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.84 E-value=0.014 Score=56.77 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=26.3
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+++...--++|+|+.|||||||++.|++-
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455666668999999999999999999985
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.82 E-value=0.014 Score=54.09 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=23.0
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCCC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAKP 297 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~~ 297 (480)
+...--++|+|++|||||||++.|.+..+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 33444699999999999999999998654
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.81 E-value=0.015 Score=56.48 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 355666677789999999999999999999863
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.77 E-value=0.015 Score=56.78 Aligned_cols=32 Identities=31% Similarity=0.303 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...-.++|+|+.|||||||++.|++-.
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555666689999999999999999999864
No 286
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.71 E-value=0.016 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=27.6
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.|||||||++.|++-.
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355566666689999999999999999999864
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.71 E-value=0.012 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=23.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+..--++|+|+.|||||||++.|.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444469999999999999999999864
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.63 E-value=0.014 Score=54.06 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|+|.+|||||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999865
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.61 E-value=0.018 Score=56.08 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=27.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.+...--++|+|+.|||||||++.|++-.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45566666689999999999999999999864
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.61 E-value=0.016 Score=53.12 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=22.5
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.+.....|+|+|++||||||+.+.|...
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455666678999999999999999999854
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.59 E-value=0.015 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.54 E-value=0.018 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
...-|+|+|.+|||||||++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34469999999999999999998764
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.54 E-value=0.019 Score=55.86 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=27.4
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++. .-.++|+|+.|||||||++.|++..
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556677 7789999999999999999999864
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.45 E-value=0.014 Score=58.26 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.6
Q ss_pred ehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 266 ELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 266 ~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.++..-.|+|+|++|+|||||++.|.+-
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 344455558999999999999999999864
No 295
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.38 E-value=0.015 Score=58.07 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.1
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+.++..-.|+|+|+.|||||||++.|.+-
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 35556666678999999999999999999985
No 296
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.37 E-value=0.02 Score=54.50 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=23.3
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.+....-|+|+|..|||||||++.|.+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666677999999999999999999874
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.37 E-value=0.019 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.3
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999985
No 298
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.10 E-value=0.026 Score=55.82 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.2
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+.+...-.++|+|..|||||||++.|++-.
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345556666689999999999999999999864
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.06 E-value=0.023 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999764
No 300
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.04 E-value=0.027 Score=57.65 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.4
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.|++...--++|+|+.|||||||++.|.+-.
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 355566666679999999999999999999864
No 301
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.89 E-value=0.018 Score=60.54 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=53.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcCCCCccCCCc-eeeeccceeccCCCCCCccccCCceEEecCCcccccccccCc---cc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---LG 348 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~~~ia~~pf-TTl~p~~g~v~~~~~~~~~~~~~~~~l~DTPGlie~a~~~~g---l~ 348 (480)
..|.++|+||+||||+.+.|...-. +.+ .|...+.+.+..... .. .....++|+.|.......... ..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~----~~~~~t~~~~~d~~r~~~~---g~-~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN----FIGVPTREFNVGQYRRDMV---KT-YKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHHHHHHH---CS-CCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh----ccCCCceEEecchhhhhhc---cC-CCcccccCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999985421 011 121111111100000 00 012345777775110000000 00
Q ss_pred hhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhh
Q 011645 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 386 (480)
Q Consensus 349 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~ 386 (480)
.....++..+...++|+|+++. ..+..+.|.++++.+
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 0113444457788999999976 455556666666653
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.89 E-value=0.026 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|+|.+|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 303
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.81 E-value=0.031 Score=56.99 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.|.+...--++|+|+.|||||||++.|.+-.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455666666689999999999999999999864
No 304
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.80 E-value=0.033 Score=56.72 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=28.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.||||||||+.|.+-.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456666777789999999999999999999864
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.75 E-value=0.025 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.++|+|+.|||||||++.|++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999976
No 306
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.73 E-value=0.034 Score=56.74 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.8
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|+.||||||||+.|.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 455666667789999999999999999999864
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.69 E-value=0.03 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||++.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.67 E-value=0.032 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred ceEEEecCCCCChHHHHHHHh
Q 011645 273 ADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt 293 (480)
..|+|+|.+|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999999
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.63 E-value=0.033 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 310
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.60 E-value=0.036 Score=56.57 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.||||||||+.|.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455666667789999999999999999999864
No 311
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.59 E-value=0.036 Score=56.97 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.|+++..--++|+|+.|||||||++.|.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455666667789999999999999999999864
No 312
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.58 E-value=0.034 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.2
Q ss_pred ecceEEEecCCCCChHHHHHHHh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt 293 (480)
..--++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 33468999999999999999988
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.56 E-value=0.031 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
--++|+|++|||||||++.|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 314
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.56 E-value=0.038 Score=56.56 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.+++...--++|+|+.||||||||+.|.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 455666677789999999999999999999864
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.52 E-value=0.037 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.7
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.-++|+|++|+|||||+++|...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999864
No 316
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.52 E-value=0.04 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|.|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 317
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.52 E-value=0.036 Score=48.39 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=18.1
Q ss_pred eEEEecCCCCChHHHHHHH
Q 011645 274 DVGLVGLPNAGKSTLLAAI 292 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaL 292 (480)
-|+|+|+|||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 318
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.50 E-value=0.038 Score=56.59 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=27.9
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|+.||||||||+.|.+-.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456666677789999999999999999999864
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.50 E-value=0.037 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 320
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.28 E-value=0.038 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|+|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999875
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.27 E-value=0.039 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 322
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.24 E-value=0.044 Score=56.50 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.|+++..--++|+|+.||||||||+.|.+-.
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455666666789999999999999999999753
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.21 E-value=0.035 Score=56.14 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.3
Q ss_pred eehhhee--cceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRV--VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~--~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.+.. ..+++|+|.+|||||||++.|.+.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444 668999999999999999999976
No 324
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.17 E-value=0.033 Score=56.61 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=26.7
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.|+|+|.+|||||||+++|.+.-
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44556666689999999999999999999763
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.15 E-value=0.045 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-|.|.|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999986
No 326
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.15 E-value=0.034 Score=56.45 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|+.||||||||+.|.+-.
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455666666689999999999999999999864
No 327
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.10 E-value=0.032 Score=56.01 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.0
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.|+|+|.+|||||||+++|.+.-
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455555679999999999999999999863
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.09 E-value=0.047 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.|+|+|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 329
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.06 E-value=0.042 Score=59.45 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 455666777789999999999999999999863
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.06 E-value=0.041 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||+++|.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999874
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.02 E-value=0.044 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.+|||||||.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.97 E-value=0.044 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-++|+|++|+|||||+++|.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 333
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.97 E-value=0.03 Score=56.89 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..--++|+|+.||||||||+.|.+-.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455666666689999999999999999999864
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.89 E-value=0.056 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred cceEEEecCCCCChHHHHHHHhc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
...|+|+|.|||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 335
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.86 E-value=0.047 Score=58.87 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.8
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++..-.++++|+.|||||||++.|.+-.
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666689999999999999999999863
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.85 E-value=0.058 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.4
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+....|+|+|.+|||||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33446999999999999999999875
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.79 E-value=0.055 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|.|.|+|||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999865
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.78 E-value=0.058 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.|||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.76 E-value=0.055 Score=48.88 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999864
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.70 E-value=0.048 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.3
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+...-|+|+|.+|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44457999999999999999999874
No 341
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.65 E-value=0.04 Score=59.42 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=27.7
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++++|+.|||||||++.|.+--
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455666677789999999999999999999763
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.044 Score=57.72 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.5
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++....|+|+|..|||||||++.|++-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55666777899999999999999999998753
No 343
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.52 E-value=0.052 Score=58.82 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.6
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.++++..-.++++|+.|||||||++.|.+-.
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44555666689999999999999999999863
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.49 E-value=0.066 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.4
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|+|.|||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999865
No 345
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.46 E-value=0.066 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999865
No 346
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.40 E-value=0.069 Score=47.87 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|+|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 347
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.34 E-value=0.056 Score=53.73 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.-++|+|+.|||||||||.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 34568999999999999999999653
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.27 E-value=0.069 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..|+|.|.|||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 349
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.26 E-value=0.067 Score=57.70 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=28.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++++|+.|||||||++.|.+-.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 455666777789999999999999999999863
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.24 E-value=0.038 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 351
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.22 E-value=0.055 Score=58.51 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++++|+.|||||||++.|.+--
T Consensus 361 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 355566667789999999999999999999753
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.21 E-value=0.076 Score=48.82 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+|+|.|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 353
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.21 E-value=0.055 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-++|+|.+|+|||||+++|.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.08 E-value=0.081 Score=48.73 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+|+|+|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.07 E-value=0.075 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|+|||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 356
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.97 E-value=0.058 Score=57.52 Aligned_cols=32 Identities=31% Similarity=0.235 Sum_probs=25.5
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+.++..-.|+|+|.+|||||||+++|++.-
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33444555569999999999999999999753
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.89 E-value=0.055 Score=52.23 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.8
Q ss_pred ehhhee---cceEEEecCCCCChHHHHHHHhc
Q 011645 266 ELILRV---VADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 266 ~l~lk~---~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.+.++. ...|+|+|++||||||+.+.|..
T Consensus 39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344444 56799999999999999999976
No 358
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.84 E-value=0.073 Score=51.80 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEecCCCCChHHHHHHHhcC
Q 011645 275 VGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~ 295 (480)
|+|+|+||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999875
No 359
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.82 E-value=0.09 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|+|.|||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 360
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.72 E-value=0.077 Score=52.62 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=25.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.++..--|+|+|..|||||||++.|.+.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4444556667999999999999999999764
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.68 E-value=0.075 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|+|+|.+|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.66 E-value=0.1 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|+|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.64 E-value=0.1 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.++|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.56 E-value=0.095 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.4
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+|+|.|+|||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999753
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.56 E-value=0.092 Score=47.64 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|.|.|||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 366
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.53 E-value=0.068 Score=63.27 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+.++-.-+|||||.+|||||||++.|.+-
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45566677779999999999999999999874
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.52 E-value=0.08 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||+++|.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999864
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.51 E-value=0.084 Score=49.97 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEecCCCCChHHHHHHHhcC
Q 011645 275 VGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~ 295 (480)
|+|+|+||+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 369
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.47 E-value=0.089 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|+|+|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999754
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.47 E-value=0.086 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.47 E-value=0.1 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|.|+|.||+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999999743
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.45 E-value=0.11 Score=47.47 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.6
Q ss_pred cceEEEecCCCCChHHHHHHHhc
Q 011645 272 VADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..-|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.40 E-value=0.11 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 374
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.39 E-value=0.26 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.9
Q ss_pred ecceEEEecCCCCChHHHHHHHh
Q 011645 271 VVADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt 293 (480)
.+.-|+|+|.+++|||+|+|.|.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45668999999999999999765
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.38 E-value=0.1 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-.+|+|..++|||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.36 E-value=0.093 Score=46.86 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|.+||||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.31 E-value=0.08 Score=53.60 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.1
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+...-.++|+|.+|||||||++.|++..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444555689999999999999999999863
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.30 E-value=0.11 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+|+|.|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.30 E-value=0.11 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|+|.|||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999754
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.26 E-value=0.1 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
....|+|.|.|+|||||+.+.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999764
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.23 E-value=0.1 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-++|+|.+|+|||||++.|..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.22 E-value=0.1 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.8
Q ss_pred ceEEEecCCCCChHHHHHHHh
Q 011645 273 ADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt 293 (480)
..|+|+|++|||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.20 E-value=0.11 Score=46.45 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|.|.|+|||||+.+.|...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 384
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.05 E-value=0.12 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.-|+|+|++|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999754
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.02 E-value=0.055 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|.+|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999754
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.99 E-value=0.096 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-.|+|+|++|||||||+++|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 336999999999999999999864
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.98 E-value=0.12 Score=49.59 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.9
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|.|+|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999853
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.96 E-value=0.12 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.4
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.79 E-value=0.11 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
--++|+|.||+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.78 E-value=0.12 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999764
No 391
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.75 E-value=0.47 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|.|.|.||+|||+|..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
No 392
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.73 E-value=0.12 Score=54.70 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=25.2
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.+.++. --++|+|+.|||||||+++|.+-
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 34455556 67899999999999999999864
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.65 E-value=0.13 Score=55.21 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.1
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
...-.++|+|..|||||||++.|++..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344479999999999999999999864
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.64 E-value=0.11 Score=49.98 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|+||+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999875
No 395
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.57 E-value=0.1 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.3
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|+|+|..|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 336899999999999999999876
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.54 E-value=0.11 Score=52.78 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=25.4
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.++..--|+|+|..|||||||++.|.+.
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4445556667999999999999999999763
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.53 E-value=0.13 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 398
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.50 E-value=0.15 Score=46.48 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.|+|||||+.+.|...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.46 E-value=0.14 Score=45.65 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|+|.|.|+|||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.46 E-value=0.14 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.|||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.38 E-value=0.15 Score=47.07 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.3
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+|+|.+||||||+.+.|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999754
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.34 E-value=0.12 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||+++|.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.29 E-value=0.12 Score=51.37 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-.++|+|+||+|||||+++|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999875
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.21 E-value=0.13 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|+|+|.+|||||||++.|.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999754
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.20 E-value=0.11 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999754
No 406
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.15 E-value=0.13 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEEEecCCCCChHHHHHHHhcCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
-++|+|+.|||||||++.|++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999863
No 407
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.12 E-value=0.16 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.|+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 408
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.12 E-value=0.14 Score=60.61 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.0
Q ss_pred EeeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 263 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 263 ~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
..+.++++..-.++|||..|+|||||++.|.+.-
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3466677777899999999999999999999763
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.12 E-value=0.15 Score=45.46 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|+|.|||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 410
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.09 E-value=0.14 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.++|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35999999999999999999875
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.06 E-value=0.17 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.-|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 412
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.03 E-value=0.12 Score=53.97 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.0
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+.+...-.++|+|.+|||||||++.|.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445555589999999999999999999863
No 413
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.00 E-value=0.14 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+..-.++|+|+.|||||||++.|++..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.84 E-value=0.15 Score=47.34 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
--++|+|.+|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999873
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.81 E-value=0.17 Score=47.14 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.67 E-value=0.17 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|.|.+||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999854
No 417
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.52 E-value=0.16 Score=60.04 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=28.0
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.+.++++..-.++|||..|||||||++.|.+-.
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666777799999999999999999998753
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.42 E-value=0.17 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|+|+||||||||.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999754
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.41 E-value=0.19 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.6
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-++|+|.||+|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.41 E-value=0.2 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
....|+|.|.|||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999753
No 421
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.31 E-value=0.18 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|.||+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 422
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.30 E-value=0.2 Score=44.14 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-.|+|.|.+||||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 423
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.29 E-value=0.08 Score=53.94 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=24.5
Q ss_pred eeehhheecceEEEecCCCCChHHHHHHHh
Q 011645 264 SLELILRVVADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 264 ~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt 293 (480)
.+.+++... .++|+|..||||||||++|.
T Consensus 53 ~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred eEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 455666777 89999999999999999984
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.17 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.3
Q ss_pred eEEEecCCCCChHHHHHHHhcCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
-++|+|+.|||||||++.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 69999999999999999999864
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.15 E-value=0.14 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+|+|++|+|||||+++|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3346999999999999999999864
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.13 E-value=0.17 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.2
Q ss_pred eecceEEEecCCCCChHHHHHHHhcCC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
+..-.++|+|+.|||||||++.|.+..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999999864
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.11 E-value=0.22 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|.|+|||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 428
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.03 E-value=0.19 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcCC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
..-.++|+|..|||||||++.|++..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33479999999999999999999864
No 429
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.00 E-value=0.18 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.7
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|+|+|.+|||||||.+.|...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999998653
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.97 E-value=0.18 Score=54.11 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.8
Q ss_pred heecceEEEecCCCCChHHHHHHHhcCC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
++..--++|+|+.|||||||++.|++..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445579999999999999999999864
No 431
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.95 E-value=0.19 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|+|++|||||||.++|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3789999999999999999754
No 432
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.85 E-value=0.15 Score=58.54 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.1
Q ss_pred EeeehhheecceEEEecCCCCChHHHHHHHhcCC
Q 011645 263 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 263 ~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
..+.+.++..-.++|+|..|||||||++.|++..
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466777777889999999999999999999864
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.83 E-value=0.23 Score=50.34 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=18.3
Q ss_pred eEEEecCCCCChHHHHHHHh
Q 011645 274 DVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt 293 (480)
-++|+|..|||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999997
No 434
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.81 E-value=0.15 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.1
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|.|+|+|||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999864
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.78 E-value=0.23 Score=43.73 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.7
Q ss_pred EEEecCCCCChHHHHHHHh
Q 011645 275 VGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt 293 (480)
.+|+|+.|+|||||+.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999986
No 436
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.74 E-value=0.21 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556999999999999999999865
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.63 E-value=0.24 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|.|+|+|||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 438
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.96 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||+|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45999999999999999999864
No 439
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.08 E-value=0.25 Score=46.66 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|.|+|+||+|||||+++|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 440
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.05 E-value=0.24 Score=58.48 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.2
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.++++..-.|+|+|+.|+|||||++.|.+-
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4455566668999999999999999999985
No 441
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.83 E-value=0.87 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-+.|.|+||+|||||+++|...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999865
No 442
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.74 E-value=0.87 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.0
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+-..-|.|.|+||+|||+|.++|.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 33446999999999999999999864
No 443
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.67 E-value=0.28 Score=56.24 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=26.1
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHhcC
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+.+.+...-.++|+|..|||||||++.|.+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666678999999999999999999853
No 444
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.55 E-value=0.96 Score=47.17 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||+|.++|.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999864
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.45 E-value=0.28 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEecCCCCChHHHHHHHhc
Q 011645 274 DVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~ 294 (480)
-|.|+|.|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.12 E-value=0.34 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|.|.++|||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999763
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.10 E-value=0.29 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|.|.|.||+|||||++++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 448
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.07 E-value=0.74 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|.|.|+||+|||+|.+++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.03 E-value=0.33 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|+|+|.++|||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999864
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.93 E-value=0.31 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=22.0
Q ss_pred heecceEEEecCCCCChHHHHHHHhc
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+...--++|+|.+++|||||+..|..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44555699999999999999999875
No 451
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.91 E-value=0.31 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.|+|.|.+||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.75 E-value=0.31 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred eEEEecCCCCChHHHHHHHhcCCC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHAKP 297 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~~~ 297 (480)
-++|+|+.|||||||++.|++...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 489999999999999999998653
No 453
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.74 E-value=0.21 Score=54.74 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=23.7
Q ss_pred eehhheecceEEEecCCCCChHHHHHHHh
Q 011645 265 LELILRVVADVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 265 l~l~lk~~~~V~lvG~pNaGKSSLlnaLt 293 (480)
+.+.+...--++|+|+.|||||||++.|.
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45556666779999999999999998754
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.67 E-value=0.35 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.65 E-value=0.33 Score=43.98 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|.||+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.57 E-value=0.25 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|.|.|.||+|||+|+.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999754
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.30 E-value=0.25 Score=53.13 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
....|+|+|++|||||||+++|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4457999999999999999999865
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.10 E-value=0.36 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHhc
Q 011645 273 ADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
..|+|.|.++|||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999983
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=0.99 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..-|.|.|+||+|||+|.+++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.02 E-value=0.42 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...|+|.|++|+||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999743
No 461
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.95 E-value=1.3 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||+|.+++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 45999999999999999999865
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.87 E-value=0.086 Score=50.20 Aligned_cols=21 Identities=48% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEecCCCCChHHHHHHHhcC
Q 011645 275 VGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++|+|+.|||||||+++|++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999875
No 463
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.76 E-value=0.56 Score=46.86 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=21.2
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
....+.|.|+||+|||++++++...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3346899999999999999999754
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.63 E-value=0.44 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++++|+|.|+|||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999753
No 465
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.55 E-value=0.4 Score=43.38 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-+.|.|.+|+|||||++++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
No 466
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.23 E-value=0.44 Score=44.11 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.5
Q ss_pred eEEEecCCCCChHHHHHHHh
Q 011645 274 DVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt 293 (480)
-++|+|.||+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999977664
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.15 E-value=0.41 Score=49.30 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|+|+||||||||.+.|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999999854
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.04 E-value=0.46 Score=43.83 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=17.8
Q ss_pred eEEEecCCCCChHHHHHHHh
Q 011645 274 DVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt 293 (480)
-.+|+|..++|||||+.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999985
No 469
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.69 E-value=0.43 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||||+++|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 470
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.64 E-value=0.47 Score=42.44 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.|.|.||+|||+|+.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999753
No 471
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.60 E-value=0.5 Score=44.54 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.4
Q ss_pred heecceEEEecCCCCChHHHHHHHhcC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++...-|.|+|+|||||+|+...|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344444778999999999999999854
No 472
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.16 E-value=1.7 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||+|..+|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 473
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.07 E-value=1.7 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|.||+|||+|+.+|...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999999764
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.05 E-value=0.39 Score=45.81 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999865
No 475
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.85 E-value=0.55 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.8
Q ss_pred eecceEEEecCCCCChHHHHHHHhcC
Q 011645 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 270 k~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+...-|.|.|.||+|||+|+++|...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33456899999999999999999864
No 476
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=83.71 E-value=0.57 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred heecceEEEecCCCCChHHHHHHH
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAI 292 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaL 292 (480)
.+...+|.|+|.+++|||||++.+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 456789999999999999999997
No 477
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.60 E-value=0.51 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|.|.|.||+|||+|+++|...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3446999999999999999999865
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.58 E-value=0.5 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|++|+|||||++++.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 479
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.37 E-value=0.51 Score=46.66 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred eEEEecCCCCChHHHHHHHh
Q 011645 274 DVGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt 293 (480)
-.+|+|..|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 57899999999999999997
No 480
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.33 E-value=0.57 Score=45.73 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.5
Q ss_pred ecceEEEecCCCCChHHHHHHHhcC
Q 011645 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 271 ~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
...-|.|.|+||+|||+|+++|.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3345999999999999999999865
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.93 E-value=0.5 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.0
Q ss_pred heecceEEEecCCCCChHHHHHHH
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAI 292 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaL 292 (480)
+...--++|+|.+|||||||++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 344447999999999999999994
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.89 E-value=0.45 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.+.|.|+||+||||+..+|.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 483
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.85 E-value=0.49 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..+.|.|++|+|||||+++|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999999873
No 484
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.65 E-value=0.59 Score=49.81 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCcEEeeehhheecceEEEecCCCCChHHHHHHHhc
Q 011645 259 HGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 259 ~Ge~~~l~l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
.|+-. .+.|.....++++|.+|+|||+++++|..
T Consensus 156 ~G~pv--~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 156 AGEPV--VADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp TSCEE--EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEE--EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 45433 34456688999999999999999999864
No 485
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.64 E-value=2.3 Score=39.24 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=44.4
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCCcC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl~~ 406 (480)
.++|+|||+.... .....+..||.+++|++.+. ........+.+.++.+.. ....+.+|+|++|...
T Consensus 120 D~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 120 DYIIVDFGASIDH---------VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEFEK--PISRIEIILNRADTNS 186 (245)
T ss_dssp SEEEEEEESSCCT---------THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTCSS--CCSCEEEEEESTTSCT
T ss_pred CEEEEeCCCCCch---------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhCC--CccceEEEEecCCCCC
Confidence 6899999986431 23445677999999998763 233444555566654432 2356889999998654
No 486
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.52 E-value=0.59 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-+.|.|+||+|||||++++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 487
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.49 E-value=0.6 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-+.|.|.||+|||||++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999864
No 488
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.47 E-value=0.55 Score=47.24 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred heecceEEEecCCCCChHHHHHHHhcC
Q 011645 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 269 lk~~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
+...--++|+|.+++|||||+..|+..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445556899999999999999999865
No 489
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=82.19 E-value=1.9 Score=39.76 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.6
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
.++|+|||+.... .....+..||.+++|++.+.. .......+.+.+..+. -..+.+|+|+.+-
T Consensus 133 D~viiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~----~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 133 EAVVMDMGAGIEH---------LTRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLG----IKKVRYVINKVRN 195 (254)
T ss_dssp SEEEEEECTTCTT---------CCHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHT----CSCEEEEEEEECC
T ss_pred CEEEEeCCCcccH---------HHHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcC----CccEEEEEeCCCC
Confidence 6899999975431 234456779999999988642 2344444555455443 2558899999983
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.11 E-value=0.62 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
.-|.|.|+||+|||+|.++|...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34677799999999999999864
No 491
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.01 E-value=0.65 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.0
Q ss_pred cceEEEecCCCCChHHHHHHHhcC
Q 011645 272 VADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 272 ~~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
++.+.|.|+||+||||++++|.+.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999865
No 492
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.99 E-value=2.2 Score=40.26 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=44.3
Q ss_pred ceEEecCCcccccccccCccchhhhhhhccCCEEEEecccCCCCChhhHHHHHHHHHhhCCCCCCCCEEEEEeCCCC
Q 011645 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (480)
Q Consensus 328 ~~~l~DTPGlie~a~~~~gl~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kp~ivV~NK~Dl 404 (480)
.++|+|||.... ......+..||.+|+|+..+. ........+.+.++.... +.++.+|+|+++.
T Consensus 146 D~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~---~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 146 DYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNL---FLPIFLIITRFKK 209 (267)
T ss_dssp SEEEEEECSSCS---------HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTC---CCCEEEEEEEECT
T ss_pred CEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhc---cCCEEEEEecccC
Confidence 589999998542 234455667999999998864 334555666666765532 3577899999953
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.93 E-value=0.69 Score=47.04 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|+|+|++|+||||+..+|...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988753
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.73 E-value=0.73 Score=43.16 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|+|.|.+||||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.62 E-value=0.79 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHhcCC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~~ 296 (480)
.-|+|+|++++|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998663
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.58 E-value=0.73 Score=45.91 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.2
Q ss_pred EEEecCCCCChHHHHHHHh
Q 011645 275 VGLVGLPNAGKSTLLAAIT 293 (480)
Q Consensus 275 V~lvG~pNaGKSSLlnaLt 293 (480)
.+|+|+.|+|||||+.+|+
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999984
No 497
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.47 E-value=0.69 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHhcC
Q 011645 274 DVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 274 ~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
-|.|+|.||+|||+|.++|...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999864
No 498
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=81.17 E-value=0.79 Score=46.51 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=21.8
Q ss_pred hhheecceEEEecCCCCChHHHHHHHhc
Q 011645 267 LILRVVADVGLVGLPNAGKSTLLAAITH 294 (480)
Q Consensus 267 l~lk~~~~V~lvG~pNaGKSSLlnaLt~ 294 (480)
+++... -++|+|+.|+|||||+++|..
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 344444 589999999999999999974
No 499
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.87 E-value=0.76 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|.|.|.||+|||+|+++|...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 500
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.85 E-value=0.74 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHhcC
Q 011645 273 ADVGLVGLPNAGKSTLLAAITHA 295 (480)
Q Consensus 273 ~~V~lvG~pNaGKSSLlnaLt~~ 295 (480)
..|.|.|.||+|||+|.++|...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999987653
Done!