Query 011648
Match_columns 480
No_of_seqs 678 out of 3191
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 12:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-36 5.7E-41 299.6 42.8 408 59-476 113-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.8E-36 2E-40 295.7 38.5 406 61-476 82-548 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-29 2.5E-33 231.3 47.8 372 78-458 16-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2E-29 7E-34 235.0 43.7 367 103-476 5-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-30 4.3E-35 247.2 24.4 213 115-352 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5.1E-35 246.6 24.5 201 220-420 10-221 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 8.2E-25 2.8E-29 208.1 39.7 361 95-462 24-443 (450)
8 2gw1_A Mitochondrial precursor 100.0 7.4E-25 2.5E-29 212.1 38.6 402 66-476 9-481 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.5E-24 2.2E-28 201.9 37.2 328 115-451 10-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 8.1E-24 2.8E-28 204.8 38.4 375 61-445 37-483 (514)
11 3fp2_A TPR repeat-containing p 99.9 7.3E-23 2.5E-27 199.3 41.3 400 64-476 26-494 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 2.9E-21 1E-25 177.5 39.0 331 96-455 2-351 (359)
13 3fp2_A TPR repeat-containing p 99.9 2.9E-21 9.9E-26 188.0 39.6 367 61-439 57-492 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-20 3.7E-25 173.8 38.4 318 131-476 3-338 (359)
15 3hym_B Cell division cycle pro 99.9 2.5E-20 8.6E-25 169.3 30.3 294 95-419 20-314 (330)
16 3hym_B Cell division cycle pro 99.9 4.9E-20 1.7E-24 167.3 30.8 293 163-461 19-322 (330)
17 2xm6_A Protein corresponding t 99.9 5.8E-17 2E-21 155.4 51.0 333 79-439 61-433 (490)
18 2ooe_A Cleavage stimulation fa 99.9 1.2E-17 4.2E-22 161.8 42.3 406 61-475 11-494 (530)
19 1fch_A Peroxisomal targeting s 99.9 1.4E-19 4.8E-24 167.1 26.8 289 179-471 38-357 (368)
20 2xm6_A Protein corresponding t 99.9 2.1E-16 7.2E-21 151.5 49.1 364 80-474 26-433 (490)
21 1fch_A Peroxisomal targeting s 99.9 7.3E-20 2.5E-24 169.0 24.1 264 169-436 67-357 (368)
22 4eqf_A PEX5-related protein; a 99.8 7.8E-20 2.7E-24 168.7 20.4 268 199-469 64-352 (365)
23 4eqf_A PEX5-related protein; a 99.8 9.7E-20 3.3E-24 168.0 20.0 265 167-434 66-352 (365)
24 3cv0_A Peroxisome targeting si 99.8 4.1E-18 1.4E-22 154.4 26.4 278 97-400 21-312 (327)
25 3cv0_A Peroxisome targeting si 99.8 4.5E-18 1.5E-22 154.1 25.2 152 280-433 148-310 (327)
26 1b89_A Protein (clathrin heavy 99.8 3.5E-19 1.2E-23 161.2 15.4 290 65-397 8-305 (449)
27 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.7E-20 145.2 43.9 373 59-438 42-492 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 6.3E-17 2.2E-21 143.3 27.4 250 139-437 7-263 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 3.6E-17 1.2E-21 144.9 25.1 259 104-376 6-271 (291)
30 4g1t_A Interferon-induced prot 99.8 9E-16 3.1E-20 146.6 36.6 367 94-476 48-462 (472)
31 1b89_A Protein (clathrin heavy 99.8 3.2E-18 1.1E-22 154.8 16.5 284 108-431 14-304 (449)
32 1xi4_A Clathrin heavy chain; a 99.8 2.3E-14 7.9E-19 144.8 43.7 365 58-465 980-1376(1630)
33 4g1t_A Interferon-induced prot 99.8 1.7E-15 5.9E-20 144.6 34.1 361 64-439 52-460 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.1E-18 1.4E-22 166.4 11.6 119 199-317 126-248 (1134)
35 1xi4_A Clathrin heavy chain; a 99.7 9.6E-14 3.3E-18 140.4 41.7 325 95-474 983-1310(1630)
36 3spa_A Mtrpol, DNA-directed RN 99.7 6.6E-18 2.2E-22 165.0 10.7 116 341-456 128-248 (1134)
37 2pl2_A Hypothetical conserved 99.7 4.9E-16 1.7E-20 131.5 20.6 200 94-297 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.8E-15 6.1E-20 131.8 24.0 226 200-438 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.7 1.6E-15 5.6E-20 132.1 23.4 223 132-402 6-235 (258)
40 2pl2_A Hypothetical conserved 99.7 3.1E-15 1.1E-19 126.5 21.5 208 234-470 4-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.7 8.1E-15 2.8E-19 138.4 25.6 368 78-473 20-421 (452)
42 3u4t_A TPR repeat-containing p 99.7 1.9E-14 6.6E-19 126.5 25.4 249 199-451 2-262 (272)
43 2h6f_A Protein farnesyltransfe 99.7 2.4E-14 8.3E-19 131.0 26.5 248 96-350 96-363 (382)
44 3u4t_A TPR repeat-containing p 99.7 1.3E-14 4.6E-19 127.5 24.1 190 137-331 9-205 (272)
45 2ho1_A Type 4 fimbrial biogene 99.7 3.8E-14 1.3E-18 123.1 26.1 200 97-299 37-238 (252)
46 2vq2_A PILW, putative fimbrial 99.7 4.7E-14 1.6E-18 120.0 24.5 201 96-298 7-210 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.7E-15 9.3E-20 132.1 17.2 246 109-363 17-269 (275)
48 2q7f_A YRRB protein; TPR, prot 99.7 7.4E-15 2.5E-19 126.7 19.6 202 95-299 21-222 (243)
49 1ouv_A Conserved hypothetical 99.7 5.8E-13 2E-17 117.1 31.6 224 199-439 5-252 (273)
50 2ho1_A Type 4 fimbrial biogene 99.7 1E-13 3.4E-18 120.3 26.2 196 240-438 42-238 (252)
51 1ouv_A Conserved hypothetical 99.7 7.1E-13 2.4E-17 116.5 31.7 225 234-475 5-253 (273)
52 2h6f_A Protein farnesyltransfe 99.6 6.9E-14 2.4E-18 128.0 25.4 232 237-474 99-349 (382)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-14 5.6E-19 127.1 20.0 248 211-467 16-269 (275)
54 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.8E-18 117.0 25.2 203 234-438 7-211 (225)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 9E-19 123.2 20.3 125 170-296 27-151 (243)
56 3e4b_A ALGK; tetratricopeptide 99.6 6.1E-14 2.1E-18 132.4 24.1 346 103-474 9-388 (452)
57 4e6h_A MRNA 3'-END-processing 99.6 6.4E-12 2.2E-16 122.7 36.7 420 49-476 54-573 (679)
58 3sf4_A G-protein-signaling mod 99.6 4.3E-14 1.5E-18 131.9 18.6 299 129-459 7-362 (406)
59 3sf4_A G-protein-signaling mod 99.6 2.1E-14 7.3E-19 134.0 15.7 203 95-297 7-254 (406)
60 4a1s_A PINS, partner of inscut 99.6 3.6E-14 1.2E-18 132.9 16.8 94 169-262 51-153 (411)
61 4a1s_A PINS, partner of inscut 99.6 4.8E-14 1.7E-18 132.0 17.3 277 131-438 48-372 (411)
62 2ond_A Cleavage stimulation fa 99.6 4.9E-12 1.7E-16 113.2 29.4 236 200-438 8-270 (308)
63 2ond_A Cleavage stimulation fa 99.6 4.5E-12 1.5E-16 113.4 27.8 219 114-334 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.6 8.6E-14 2.9E-18 126.2 16.8 270 206-476 11-335 (338)
65 3ro2_A PINS homolog, G-protein 99.5 3.2E-13 1.1E-17 122.3 19.6 96 342-437 225-331 (338)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.2E-17 107.4 21.3 168 95-264 3-170 (184)
67 3ulq_A Response regulator aspa 99.5 8.7E-13 3E-17 122.2 22.7 232 241-475 109-370 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 2.5E-12 8.4E-17 105.6 22.8 167 269-438 4-170 (184)
69 3ulq_A Response regulator aspa 99.5 1.5E-12 5.1E-17 120.5 22.4 229 206-437 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.1E-12 3.8E-17 124.6 21.7 212 251-467 84-315 (474)
71 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.1E-17 124.3 20.9 214 182-399 84-317 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.5E-18 122.1 13.4 242 199-476 26-310 (311)
73 4e6h_A MRNA 3'-END-processing 99.5 4.7E-10 1.6E-14 109.7 37.4 392 79-475 50-535 (679)
74 3nf1_A KLC 1, kinesin light ch 99.5 4.1E-13 1.4E-17 120.4 12.9 176 131-333 27-223 (311)
75 3q15_A PSP28, response regulat 99.4 1.9E-11 6.4E-16 112.9 23.2 229 242-473 108-365 (378)
76 3q15_A PSP28, response regulat 99.4 3.7E-11 1.2E-15 111.0 24.8 229 205-437 106-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 3.1E-11 1.1E-15 98.9 21.0 167 307-476 10-176 (186)
78 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.8E-15 107.5 26.3 264 139-402 22-321 (373)
79 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.6E-15 106.9 26.7 299 169-475 17-351 (373)
80 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.6E-16 100.1 18.8 165 97-263 8-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-11 5.6E-16 121.3 18.8 168 94-263 6-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.4 4.6E-11 1.6E-15 118.1 20.9 166 269-437 8-173 (723)
83 4i17_A Hypothetical protein; T 99.4 1.2E-10 4.1E-15 99.1 20.5 198 268-476 5-212 (228)
84 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.3E-15 97.6 21.5 197 233-439 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 3.3E-11 1.1E-15 106.1 14.5 229 246-474 12-282 (283)
86 1qqe_A Vesicular transport pro 99.3 5.4E-10 1.8E-14 98.9 21.1 190 244-435 46-266 (292)
87 3edt_B KLC 2, kinesin light ch 99.3 4.7E-11 1.6E-15 105.1 13.7 226 211-437 12-280 (283)
88 3mv2_B Coatomer subunit epsilo 99.2 5.6E-09 1.9E-13 90.7 24.2 61 238-298 103-164 (310)
89 2fo7_A Synthetic consensus TPR 99.2 7.5E-10 2.6E-14 85.1 16.8 129 99-228 3-131 (136)
90 3mv2_B Coatomer subunit epsilo 99.2 6.2E-09 2.1E-13 90.4 23.8 247 174-444 21-286 (310)
91 2fo7_A Synthetic consensus TPR 99.2 1.8E-09 6.1E-14 83.0 17.9 130 343-474 4-133 (136)
92 3qky_A Outer membrane assembly 99.2 1.3E-09 4.4E-14 94.8 18.0 187 95-299 13-224 (261)
93 3urz_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 91.0 15.5 113 97-210 4-132 (208)
94 2pzi_A Probable serine/threoni 99.1 7.3E-10 2.5E-14 110.0 16.2 174 108-285 402-583 (681)
95 2uy1_A Cleavage stimulation fa 99.1 2E-07 6.7E-12 88.5 32.0 357 60-436 12-411 (493)
96 3qky_A Outer membrane assembly 99.1 4E-09 1.4E-13 91.7 18.4 186 234-439 14-225 (261)
97 3urz_A Uncharacterized protein 99.1 3.6E-09 1.2E-13 88.4 17.0 137 309-450 58-196 (208)
98 1qqe_A Vesicular transport pro 99.1 4E-09 1.4E-13 93.3 18.2 166 168-333 79-268 (292)
99 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4E-12 83.3 26.2 131 79-212 51-192 (306)
100 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4E-12 83.3 25.8 222 110-334 46-287 (306)
101 2pzi_A Probable serine/threoni 99.1 2.8E-09 9.6E-14 105.9 17.5 173 246-424 402-583 (681)
102 2uy1_A Cleavage stimulation fa 99.1 5.4E-07 1.9E-11 85.4 32.1 343 111-472 28-412 (493)
103 4ga2_A E3 SUMO-protein ligase 99.1 1.4E-09 4.8E-14 85.5 11.2 142 314-458 6-148 (150)
104 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 88.7 11.0 160 100-261 9-170 (176)
105 3qou_A Protein YBBN; thioredox 99.0 6.4E-09 2.2E-13 91.7 15.9 166 95-262 115-282 (287)
106 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.7E-08 5.9E-13 85.4 18.1 186 96-301 3-215 (225)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.1E-08 1.1E-12 83.8 19.7 190 270-477 4-217 (225)
108 4ga2_A E3 SUMO-protein ligase 99.0 7E-10 2.4E-14 87.3 8.6 110 109-219 9-118 (150)
109 2r5s_A Uncharacterized protein 99.0 4E-09 1.4E-13 85.5 13.2 158 276-436 12-171 (176)
110 2vsy_A XCC0866; transferase, g 99.0 7.2E-09 2.5E-13 101.1 17.0 150 78-230 6-158 (568)
111 3rjv_A Putative SEL1 repeat pr 99.0 5.2E-08 1.8E-12 81.5 19.8 176 218-404 4-198 (212)
112 3qou_A Protein YBBN; thioredox 99.0 1.7E-08 5.8E-13 88.9 17.5 168 128-297 114-282 (287)
113 2vsy_A XCC0866; transferase, g 99.0 1.5E-08 5.2E-13 98.8 18.7 155 283-440 2-159 (568)
114 3rjv_A Putative SEL1 repeat pr 99.0 1.9E-07 6.3E-12 78.1 22.0 174 254-439 5-198 (212)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-08 5E-13 90.4 15.4 158 243-401 44-222 (307)
116 2qfc_A PLCR protein; TPR, HTH, 98.9 4E-07 1.4E-11 80.5 22.3 203 53-260 36-262 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 3.3E-08 1.1E-12 88.1 14.8 222 213-465 4-253 (307)
118 3q7a_A Farnesyltransferase alp 98.9 1.7E-06 5.7E-11 76.8 25.3 167 79-249 72-256 (349)
119 4gco_A Protein STI-1; structur 98.9 7.1E-08 2.4E-12 73.0 14.1 111 97-208 13-123 (126)
120 3u3w_A Transcriptional activat 98.9 2.4E-07 8.2E-12 81.9 19.5 204 50-261 33-263 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.4E-07 8.1E-12 77.5 18.5 125 274-403 10-150 (213)
122 3q7a_A Farnesyltransferase alp 98.8 3.3E-06 1.1E-10 74.9 25.9 224 108-334 65-331 (349)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 9.4E-07 3.2E-11 78.0 22.6 162 274-435 79-263 (293)
124 3u3w_A Transcriptional activat 98.8 1.9E-06 6.6E-11 76.0 24.4 163 311-473 81-266 (293)
125 2c2l_A CHIP, carboxy terminus 98.8 5.3E-08 1.8E-12 85.4 13.9 95 132-227 5-99 (281)
126 1a17_A Serine/threonine protei 98.8 2.8E-07 9.5E-12 73.5 17.0 129 342-472 15-145 (166)
127 1a17_A Serine/threonine protei 98.8 1.1E-07 3.9E-12 75.8 14.5 126 99-225 15-142 (166)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.2E-07 1.1E-11 76.7 17.6 128 99-230 8-151 (213)
129 3gyz_A Chaperone protein IPGC; 98.8 3.1E-07 1.1E-11 71.7 16.1 103 340-445 36-138 (151)
130 4gco_A Protein STI-1; structur 98.8 2.8E-07 9.7E-12 69.7 15.1 97 341-438 14-110 (126)
131 1na0_A Designed protein CTPR3; 98.8 1.9E-07 6.5E-12 70.2 13.9 111 97-208 9-119 (125)
132 2lni_A Stress-induced-phosphop 98.8 1.4E-07 5E-12 71.9 12.9 116 95-211 14-129 (133)
133 3gyz_A Chaperone protein IPGC; 98.8 4.5E-08 1.5E-12 76.5 9.9 105 370-476 32-136 (151)
134 2vyi_A SGTA protein; chaperone 98.8 1.9E-07 6.4E-12 70.9 13.2 118 96-214 11-128 (131)
135 2c2l_A CHIP, carboxy terminus 98.7 9.1E-08 3.1E-12 83.9 12.3 99 95-194 2-100 (281)
136 1na0_A Designed protein CTPR3; 98.7 8.2E-07 2.8E-11 66.6 16.2 114 340-455 9-122 (125)
137 2e2e_A Formate-dependent nitri 98.7 1.2E-07 3.9E-12 76.9 12.0 121 108-229 21-144 (177)
138 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.3E-12 78.4 12.3 156 281-437 3-175 (203)
139 2vgx_A Chaperone SYCD; alterna 98.7 8E-08 2.7E-12 75.1 10.3 110 326-438 8-118 (148)
140 3dss_A Geranylgeranyl transfer 98.7 8.4E-06 2.9E-10 72.0 23.9 184 287-475 91-306 (331)
141 2e2e_A Formate-dependent nitri 98.7 2.2E-07 7.6E-12 75.2 13.1 123 315-439 20-145 (177)
142 2vyi_A SGTA protein; chaperone 98.7 6E-07 2.1E-11 68.0 14.8 118 340-459 12-129 (131)
143 2vgx_A Chaperone SYCD; alterna 98.7 1E-07 3.5E-12 74.5 9.9 97 131-228 21-117 (148)
144 2lni_A Stress-induced-phosphop 98.7 6E-07 2.1E-11 68.4 14.0 95 342-437 18-112 (133)
145 4f3v_A ESX-1 secretion system 98.7 5.1E-07 1.7E-11 77.4 14.6 189 109-299 18-237 (282)
146 1elw_A TPR1-domain of HOP; HOP 98.7 1.2E-06 4E-11 65.0 14.9 111 96-207 3-113 (118)
147 4f3v_A ESX-1 secretion system 98.7 1.3E-06 4.4E-11 74.9 16.5 189 247-438 18-237 (282)
148 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.8E-11 79.2 16.3 131 305-436 147-292 (336)
149 3upv_A Heat shock protein STI1 98.6 5.3E-07 1.8E-11 68.2 12.1 97 97-194 4-100 (126)
150 1p5q_A FKBP52, FK506-binding p 98.6 6.5E-07 2.2E-11 80.6 14.3 123 96-219 146-283 (336)
151 3upv_A Heat shock protein STI1 98.6 1.8E-06 6.2E-11 65.1 14.5 97 341-438 5-101 (126)
152 4gcn_A Protein STI-1; structur 98.6 1.2E-06 4.3E-11 66.2 13.4 107 342-450 10-122 (127)
153 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 75.9 10.9 130 167-296 27-173 (203)
154 2xcb_A PCRH, regulatory protei 98.6 4.3E-07 1.5E-11 70.4 10.5 98 340-438 18-115 (142)
155 1elw_A TPR1-domain of HOP; HOP 98.6 3.9E-06 1.3E-10 62.1 15.3 97 341-438 5-101 (118)
156 2xcb_A PCRH, regulatory protei 98.6 7.3E-07 2.5E-11 69.1 11.5 98 96-194 17-114 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-07 5.3E-12 77.7 7.9 123 306-429 39-176 (198)
158 2kck_A TPR repeat; tetratricop 98.5 9.5E-07 3.3E-11 64.8 11.2 99 96-195 5-106 (112)
159 3q49_B STIP1 homology and U bo 98.5 6.6E-06 2.2E-10 63.0 16.0 98 339-437 8-105 (137)
160 3sz7_A HSC70 cochaperone (SGT) 98.5 4.1E-06 1.4E-10 66.6 15.2 97 341-438 12-108 (164)
161 3dss_A Geranylgeranyl transfer 98.5 0.00017 5.9E-09 63.6 26.4 96 217-315 91-189 (331)
162 2dba_A Smooth muscle cell asso 98.5 4.1E-06 1.4E-10 65.0 14.7 114 95-209 26-142 (148)
163 3sz7_A HSC70 cochaperone (SGT) 98.5 1.7E-06 5.8E-11 68.9 12.3 98 96-194 10-107 (164)
164 3q49_B STIP1 homology and U bo 98.5 1.3E-06 4.5E-11 67.0 11.2 99 95-194 7-105 (137)
165 2fbn_A 70 kDa peptidylprolyl i 98.5 1.5E-06 5E-11 71.8 12.0 121 98-219 39-175 (198)
166 2kck_A TPR repeat; tetratricop 98.5 4.1E-06 1.4E-10 61.4 13.1 98 340-438 6-106 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.5 2E-06 6.9E-11 65.1 11.8 111 341-453 5-121 (131)
168 4gcn_A Protein STI-1; structur 98.5 2.3E-06 8E-11 64.7 11.6 102 374-476 8-115 (127)
169 1hxi_A PEX5, peroxisome target 98.4 3E-06 1E-10 63.4 11.1 94 343-437 20-113 (121)
170 1hxi_A PEX5, peroxisome target 98.4 3E-06 1E-10 63.4 10.9 94 100-194 20-113 (121)
171 4b4t_Q 26S proteasome regulato 98.4 4.4E-05 1.5E-09 71.4 21.1 164 238-401 58-243 (434)
172 2dba_A Smooth muscle cell asso 98.4 2E-05 6.9E-10 61.0 15.7 96 305-402 28-127 (148)
173 4b4t_Q 26S proteasome regulato 98.4 3.5E-05 1.2E-09 72.1 19.7 196 242-437 11-244 (434)
174 1elr_A TPR2A-domain of HOP; HO 98.4 4.9E-06 1.7E-10 62.9 11.4 109 306-417 5-120 (131)
175 2xev_A YBGF; tetratricopeptide 98.3 1.3E-05 4.5E-10 60.5 13.3 92 103-195 8-105 (129)
176 2xev_A YBGF; tetratricopeptide 98.3 2.9E-05 1E-09 58.5 14.1 93 345-438 7-105 (129)
177 1wao_1 Serine/threonine protei 98.2 3E-06 1E-10 80.2 9.5 118 349-468 15-134 (477)
178 3ro3_A PINS homolog, G-protein 98.2 9.9E-06 3.4E-10 63.8 11.2 134 342-475 11-160 (164)
179 3rkv_A Putative peptidylprolyl 98.2 1.6E-05 5.5E-10 62.9 12.3 66 372-438 61-126 (162)
180 3ro3_A PINS homolog, G-protein 98.2 8E-06 2.7E-10 64.4 10.4 130 308-437 12-157 (164)
181 1wao_1 Serine/threonine protei 98.2 2.7E-06 9.3E-11 80.5 8.7 120 104-224 13-134 (477)
182 1ihg_A Cyclophilin 40; ppiase 98.2 2E-05 7E-10 71.7 14.2 92 372-465 271-362 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.3E-10 74.9 13.5 121 97-218 268-403 (457)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.3E-05 7.9E-10 73.8 14.4 131 305-436 268-413 (457)
185 3k9i_A BH0479 protein; putativ 98.2 4.4E-06 1.5E-10 62.1 7.1 84 110-194 3-89 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.2 1.1E-05 3.9E-10 73.4 11.1 138 98-255 224-361 (370)
187 3rkv_A Putative peptidylprolyl 98.2 2.2E-05 7.4E-10 62.2 11.4 97 97-194 11-125 (162)
188 3k9i_A BH0479 protein; putativ 98.1 4.6E-06 1.6E-10 61.9 6.7 84 353-437 3-89 (117)
189 2l6j_A TPR repeat-containing p 98.1 6.2E-06 2.1E-10 60.4 6.5 96 96-192 3-104 (111)
190 1dce_A Protein (RAB geranylger 98.1 0.00016 5.6E-09 69.6 17.9 126 79-207 47-185 (567)
191 2hr2_A Hypothetical protein; a 98.1 5.6E-05 1.9E-09 58.4 11.8 104 346-449 17-147 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 1.5E-05 5.2E-10 71.7 9.6 113 97-227 179-291 (338)
193 2hr2_A Hypothetical protein; a 98.0 6.9E-05 2.4E-09 57.9 11.4 102 375-476 12-134 (159)
194 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 67.5 18.7 176 110-288 42-244 (567)
195 2if4_A ATFKBP42; FKBP-like, al 98.0 1.9E-05 6.4E-10 71.1 9.4 95 342-437 232-327 (338)
196 2kat_A Uncharacterized protein 98.0 5.3E-05 1.8E-09 55.8 9.6 79 358-437 3-81 (115)
197 1klx_A Cysteine rich protein B 97.9 0.00045 1.5E-08 52.7 14.6 111 319-439 9-127 (138)
198 1zu2_A Mitochondrial import re 97.9 2.4E-05 8.2E-10 60.3 7.1 100 352-454 14-134 (158)
199 1klx_A Cysteine rich protein B 97.9 0.00083 2.8E-08 51.2 14.9 111 284-404 9-127 (138)
200 1na3_A Designed protein CTPR2; 97.8 0.00017 5.9E-09 50.2 10.1 82 96-178 8-89 (91)
201 3n71_A Histone lysine methyltr 97.8 0.00012 4E-09 69.0 11.7 61 376-436 353-420 (490)
202 2l6j_A TPR repeat-containing p 97.8 0.00011 3.9E-09 53.4 9.1 63 341-403 5-67 (111)
203 3n71_A Histone lysine methyltr 97.8 0.00011 3.9E-09 69.0 10.7 124 314-437 318-463 (490)
204 2kat_A Uncharacterized protein 97.8 8.9E-05 3E-09 54.6 8.2 78 80-159 4-81 (115)
205 1na3_A Designed protein CTPR2; 97.8 0.00033 1.1E-08 48.6 10.6 60 377-437 12-71 (91)
206 3ma5_A Tetratricopeptide repea 97.6 0.00038 1.3E-08 49.7 8.7 66 371-437 4-69 (100)
207 1zu2_A Mitochondrial import re 97.5 0.0002 6.7E-09 55.2 6.8 70 109-179 14-93 (158)
208 3ma5_A Tetratricopeptide repea 97.5 0.00065 2.2E-08 48.4 8.7 65 95-159 5-69 (100)
209 3ly7_A Transcriptional activat 97.3 0.0045 1.6E-07 54.9 13.9 77 369-449 272-348 (372)
210 3ly7_A Transcriptional activat 97.3 0.0058 2E-07 54.2 13.9 136 339-476 193-342 (372)
211 2kc7_A BFR218_protein; tetratr 97.2 0.0012 4E-08 46.7 7.5 56 382-438 8-64 (99)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00078 2.7E-08 47.7 5.7 58 104-161 7-65 (99)
213 3mkq_A Coatomer beta'-subunit; 97.0 0.019 6.6E-07 58.2 16.4 128 244-403 608-736 (814)
214 3qww_A SET and MYND domain-con 97.0 0.0027 9.1E-08 58.7 8.9 86 352-437 310-410 (433)
215 1wy6_A Hypothetical protein ST 96.9 0.073 2.5E-06 39.0 14.8 68 339-406 90-157 (172)
216 3qwp_A SET and MYND domain-con 96.8 0.0071 2.4E-07 55.9 10.5 87 350-436 297-398 (429)
217 3bee_A Putative YFRE protein; 96.7 0.015 5E-07 40.5 9.4 67 95-161 4-73 (93)
218 3bee_A Putative YFRE protein; 96.7 0.016 5.6E-07 40.2 9.4 65 372-437 4-71 (93)
219 1pc2_A Mitochondria fission pr 96.6 0.017 5.9E-07 43.9 9.6 85 357-444 15-104 (152)
220 3u64_A Protein TP_0956; tetrat 96.6 0.027 9.1E-07 48.0 11.7 109 356-472 179-297 (301)
221 3qwp_A SET and MYND domain-con 96.6 0.011 3.6E-07 54.7 10.3 91 312-402 294-399 (429)
222 3mkq_A Coatomer beta'-subunit; 96.6 0.055 1.9E-06 54.9 16.6 126 108-264 610-736 (814)
223 3qww_A SET and MYND domain-con 96.6 0.006 2E-07 56.4 8.5 85 318-402 311-410 (433)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.035 1.2E-06 39.5 10.8 67 95-161 3-76 (104)
225 1pc2_A Mitochondria fission pr 96.6 0.015 5.1E-07 44.3 8.9 86 389-476 13-103 (152)
226 3mkq_B Coatomer subunit alpha; 96.4 0.17 6E-06 39.5 14.4 127 315-470 15-141 (177)
227 3mkq_B Coatomer subunit alpha; 96.4 0.19 6.5E-06 39.3 14.4 100 176-295 15-114 (177)
228 2v5f_A Prolyl 4-hydroxylase su 96.2 0.042 1.4E-06 39.1 9.4 72 372-445 3-80 (104)
229 4h7y_A Dual specificity protei 96.1 0.12 4.2E-06 38.8 11.3 62 388-451 74-135 (161)
230 3u64_A Protein TP_0956; tetrat 95.9 0.7 2.4E-05 39.4 18.8 85 216-302 179-272 (301)
231 4ady_A RPN2, 26S proteasome re 95.9 1.7 5.9E-05 43.8 23.0 272 176-456 384-673 (963)
232 4h7y_A Dual specificity protei 95.7 0.34 1.1E-05 36.5 12.0 113 304-418 12-137 (161)
233 1nzn_A CGI-135 protein, fissio 95.4 0.083 2.8E-06 38.6 8.0 95 348-444 9-107 (126)
234 1wy6_A Hypothetical protein ST 95.3 0.57 1.9E-05 34.5 15.2 139 142-301 18-156 (172)
235 3lvg_A Clathrin heavy chain 1; 95.2 5.5E-05 1.9E-09 68.4 -11.2 266 130-430 53-325 (624)
236 1nzn_A CGI-135 protein, fissio 95.1 0.27 9.2E-06 35.9 9.7 82 321-403 17-103 (126)
237 4ady_A RPN2, 26S proteasome re 95.0 3.4 0.00012 41.7 25.8 267 140-419 383-671 (963)
238 1v54_E Cytochrome C oxidase po 94.5 0.17 5.8E-06 34.8 6.8 63 146-208 25-87 (109)
239 3lvg_A Clathrin heavy chain 1; 94.4 5.8E-05 2E-09 68.3 -13.1 215 199-434 53-287 (624)
240 4gns_B Protein CSD3, chitin bi 94.0 0.26 8.9E-06 48.5 10.0 54 348-401 345-398 (754)
241 2ff4_A Probable regulatory pro 93.6 0.35 1.2E-05 43.9 9.5 56 136-192 176-231 (388)
242 1v54_E Cytochrome C oxidase po 93.5 0.72 2.5E-05 31.8 8.4 63 320-382 25-87 (109)
243 3o48_A Mitochondria fission 1 93.1 1.4 4.9E-05 32.3 10.1 77 369-447 35-114 (134)
244 2ff4_A Probable regulatory pro 92.4 0.68 2.3E-05 42.0 9.6 54 347-400 178-231 (388)
245 2y69_E Cytochrome C oxidase su 92.2 0.71 2.4E-05 33.7 7.3 62 147-208 69-130 (152)
246 4fhn_B Nucleoporin NUP120; pro 91.7 3.3 0.00011 43.7 15.1 147 310-463 817-990 (1139)
247 4b4t_P 26S proteasome regulato 91.5 8.5 0.00029 35.5 19.5 253 214-467 30-318 (445)
248 2wpv_A GET4, UPF0363 protein Y 91.4 6.5 0.00022 34.1 18.9 111 99-223 35-157 (312)
249 2y69_E Cytochrome C oxidase su 91.4 1.6 5.4E-05 31.9 8.4 62 321-382 69-130 (152)
250 4fhn_B Nucleoporin NUP120; pro 91.4 6.2 0.00021 41.6 16.8 191 172-368 818-1049(1139)
251 1y8m_A FIS1; mitochondria, unk 91.3 3.5 0.00012 30.7 11.9 74 370-445 35-111 (144)
252 4b4t_P 26S proteasome regulato 91.2 9.1 0.00031 35.3 19.6 254 179-434 29-320 (445)
253 4gns_B Protein CSD3, chitin bi 91.2 1.4 4.9E-05 43.4 10.9 54 381-435 344-397 (754)
254 3lpz_A GET4 (YOR164C homolog); 91.0 7.4 0.00025 34.0 20.0 68 99-180 37-108 (336)
255 1qsa_A Protein (soluble lytic 88.6 18 0.00063 34.9 25.6 77 135-216 76-152 (618)
256 3ffl_A Anaphase-promoting comp 88.3 5 0.00017 30.8 9.5 27 342-368 65-91 (167)
257 3o48_A Mitochondria fission 1 86.1 8.3 0.00029 28.3 9.8 66 338-403 38-107 (134)
258 1zbp_A Hypothetical protein VP 84.6 7.1 0.00024 32.8 9.4 56 105-160 5-60 (273)
259 1zbp_A Hypothetical protein VP 84.0 4.3 0.00015 34.1 7.8 117 348-474 5-130 (273)
260 3lpz_A GET4 (YOR164C homolog); 83.6 22 0.00075 31.1 21.7 81 303-401 134-214 (336)
261 3esl_A Checkpoint serine/threo 83.1 14 0.00048 29.4 10.1 74 92-165 72-149 (202)
262 1y8m_A FIS1; mitochondria, unk 82.9 13 0.00043 27.8 10.9 68 337-404 36-107 (144)
263 3ffl_A Anaphase-promoting comp 82.1 15 0.00052 28.2 11.6 60 342-401 22-90 (167)
264 4b4t_R RPN7, 26S proteasome re 81.3 19 0.00064 33.1 12.0 62 133-194 133-196 (429)
265 3txn_A 26S proteasome regulato 80.9 31 0.0011 31.0 22.1 92 205-296 104-207 (394)
266 4b4t_R RPN7, 26S proteasome re 80.7 14 0.00048 33.9 11.0 96 307-402 133-236 (429)
267 2qx5_A Nucleoporin NIC96; mRNA 77.0 57 0.0019 31.8 16.3 80 241-331 300-382 (661)
268 4a1g_A Mitotic checkpoint seri 76.5 22 0.00076 26.8 9.9 72 92-166 63-136 (152)
269 2wpv_A GET4, UPF0363 protein Y 76.2 38 0.0013 29.3 19.7 80 304-401 133-215 (312)
270 3txn_A 26S proteasome regulato 74.1 50 0.0017 29.7 23.0 25 202-226 21-45 (394)
271 1wdy_A 2-5A-dependent ribonucl 72.8 21 0.00073 29.9 9.5 17 104-120 9-25 (285)
272 3eiq_C Programmed cell death p 71.4 55 0.0019 29.0 14.2 75 377-452 220-296 (358)
273 2wvi_A Mitotic checkpoint seri 70.6 34 0.0012 26.2 10.3 73 92-167 58-132 (164)
274 1wdy_A 2-5A-dependent ribonucl 66.8 30 0.001 28.9 9.1 50 137-190 8-60 (285)
275 3eiq_C Programmed cell death p 66.2 70 0.0024 28.3 11.6 24 274-297 221-244 (358)
276 4aez_C MAD3, mitotic spindle c 63.1 46 0.0016 27.0 8.6 46 149-194 132-178 (223)
277 2uwj_G Type III export protein 63.0 34 0.0012 23.5 7.3 74 78-161 23-98 (115)
278 3kae_A CDC27, possible protein 62.2 52 0.0018 25.4 8.4 36 440-475 202-239 (242)
279 2p58_C Putative type III secre 61.8 36 0.0012 23.5 8.4 12 79-90 25-36 (116)
280 2p58_C Putative type III secre 61.1 38 0.0013 23.4 8.3 85 112-205 22-108 (116)
281 3ltm_A Alpha-REP4; protein eng 56.6 72 0.0025 25.2 18.8 139 304-457 63-201 (211)
282 1bpo_A Protein (clathrin); cla 56.4 61 0.0021 29.7 9.0 110 76-190 344-453 (494)
283 3kea_A K1L; tropism, ANK repea 55.9 61 0.0021 27.4 9.0 17 278-294 166-182 (285)
284 2d2s_A Exocyst complex compone 55.0 44 0.0015 27.5 7.4 23 103-125 24-46 (235)
285 3esl_A Checkpoint serine/threo 54.3 81 0.0028 25.1 12.7 52 356-407 95-148 (202)
286 1k1a_A B-cell lymphoma 3-encod 54.3 84 0.0029 25.3 9.9 21 106-126 15-35 (241)
287 1s1e_A KV channel interacting 54.1 85 0.0029 25.3 11.3 44 114-157 89-134 (224)
288 2nsz_A Programmed cell death p 53.8 40 0.0014 24.6 6.4 24 170-193 11-34 (129)
289 2zu6_B Programmed cell death p 52.6 1.1E+02 0.0039 26.3 12.7 69 377-446 169-239 (307)
290 1qsa_A Protein (soluble lytic 51.3 1.8E+02 0.006 28.1 38.6 96 82-182 57-152 (618)
291 3jxi_A Vanilloid receptor-rela 51.1 10 0.00034 31.7 3.2 28 138-165 9-36 (260)
292 2d2s_A Exocyst complex compone 50.3 1E+02 0.0036 25.2 10.1 88 312-401 25-118 (235)
293 1k1a_A B-cell lymphoma 3-encod 49.9 76 0.0026 25.6 8.5 19 212-230 18-36 (241)
294 3eyy_A Putative iron uptake re 49.4 73 0.0025 23.7 7.4 33 113-145 33-66 (145)
295 4b4t_S RPN3, 26S proteasome re 49.1 1.5E+02 0.0052 27.7 10.7 69 131-199 231-303 (523)
296 4ets_A Ferric uptake regulatio 49.0 49 0.0017 25.3 6.4 56 89-145 25-83 (162)
297 3kea_A K1L; tropism, ANK repea 46.9 46 0.0016 28.2 6.8 18 348-365 166-183 (285)
298 3hra_A Ankyrin repeat family p 46.8 72 0.0025 24.8 7.7 14 177-190 13-26 (201)
299 3ctd_A Putative ATPase, AAA fa 46.4 1.1E+02 0.0038 24.4 8.7 65 202-266 34-106 (213)
300 3hra_A Ankyrin repeat family p 46.1 25 0.00084 27.7 4.7 38 429-466 158-197 (201)
301 2ion_A PDCD4, programmed cell 45.7 94 0.0032 23.4 8.0 25 308-332 12-36 (152)
302 2ion_A PDCD4, programmed cell 45.6 34 0.0012 25.8 5.0 24 170-193 13-36 (152)
303 2rfa_A Transient receptor pote 43.8 1.2E+02 0.0042 24.1 9.3 17 175-191 43-59 (232)
304 3bu8_A Telomeric repeat-bindin 43.4 1.2E+02 0.004 24.4 7.6 47 114-160 89-143 (235)
305 4a1g_A Mitotic checkpoint seri 43.0 1.1E+02 0.0036 23.1 10.9 53 392-444 83-136 (152)
306 2xig_A Ferric uptake regulatio 40.8 1.1E+02 0.0038 22.8 8.3 60 399-459 17-76 (150)
307 2jul_A Calsenilin; EF-hand, ca 40.2 1.5E+02 0.0053 24.3 10.0 27 235-261 229-255 (256)
308 2fe3_A Peroxide operon regulat 40.2 1.1E+02 0.0038 22.7 7.1 60 399-459 12-71 (145)
309 2nsz_A Programmed cell death p 40.1 1E+02 0.0036 22.3 9.3 22 345-366 12-33 (129)
310 2o03_A Probable zinc uptake re 39.0 52 0.0018 23.9 5.0 42 104-145 17-59 (131)
311 1s6c_A KV4 potassium channel-i 39.0 1.3E+02 0.0043 22.9 12.0 44 114-157 56-101 (183)
312 1n11_A Ankyrin; clathrin, BAND 38.9 91 0.0031 28.2 7.9 331 103-468 17-365 (437)
313 1mzb_A Ferric uptake regulatio 38.5 1.1E+02 0.0037 22.4 6.8 59 400-459 9-68 (136)
314 4gq2_M Nucleoporin NUP120; bet 38.5 3.5E+02 0.012 27.8 12.9 88 346-438 816-926 (950)
315 2b7e_A PRE-mRNA processing pro 38.4 42 0.0014 20.5 3.5 33 216-248 2-35 (59)
316 3pvs_A Replication-associated 38.2 2.4E+02 0.0081 25.9 13.6 55 247-301 267-326 (447)
317 3eu9_A Huntingtin-interacting 38.2 62 0.0021 26.0 6.1 7 246-252 50-56 (240)
318 3mwm_A ZUR, putative metal upt 38.2 49 0.0017 24.4 4.8 43 103-145 19-62 (139)
319 4aez_C MAD3, mitotic spindle c 38.0 1.3E+02 0.0046 24.3 7.5 74 91-167 111-186 (223)
320 3ygs_P Procaspase 9; apoptosis 37.7 77 0.0026 21.6 5.4 63 119-186 26-88 (97)
321 3ltj_A Alpharep-4; protein eng 37.5 1.4E+02 0.0049 23.1 18.9 138 304-456 58-195 (201)
322 2f6m_A Suppressor protein STP2 37.4 56 0.0019 20.4 4.0 43 101-143 6-48 (65)
323 3eu9_A Huntingtin-interacting 36.4 57 0.002 26.2 5.6 14 351-364 218-231 (240)
324 2zu6_B Programmed cell death p 36.2 2.1E+02 0.0071 24.6 11.5 24 100-123 6-29 (307)
325 2keb_A DNA polymerase subunit 36.1 1E+02 0.0035 21.0 5.8 58 47-104 28-89 (101)
326 4fke_A Aminopeptidase N; zinc 36.0 3.7E+02 0.013 27.4 16.8 49 143-194 738-786 (909)
327 1mzb_A Ferric uptake regulatio 35.9 70 0.0024 23.4 5.4 34 112-145 33-67 (136)
328 2jul_A Calsenilin; EF-hand, ca 35.8 1.8E+02 0.0062 23.8 8.8 167 59-226 72-255 (256)
329 4g8k_A 2-5A-dependent ribonucl 35.4 1.8E+02 0.0062 24.9 9.0 38 221-258 220-259 (337)
330 2cos_A Serine/threonine protei 35.0 42 0.0014 19.9 3.0 36 430-470 11-48 (54)
331 3kae_A CDC27, possible protein 34.8 1.6E+02 0.0054 22.8 7.6 26 410-435 115-140 (242)
332 2keb_A DNA polymerase subunit 34.7 98 0.0033 21.1 5.1 56 392-449 27-87 (101)
333 3ezq_A Tumor necrosis factor r 34.1 1.3E+02 0.0043 21.4 8.8 86 34-124 7-93 (115)
334 3dd4_A KV channel-interacting 33.8 1.8E+02 0.0063 23.3 9.9 129 60-190 81-226 (229)
335 2wvi_A Mitotic checkpoint seri 33.7 1.6E+02 0.0054 22.5 11.5 74 370-446 59-133 (164)
336 4gq2_M Nucleoporin NUP120; bet 33.6 2.4E+02 0.0083 29.0 10.5 108 311-423 816-950 (950)
337 2w57_A Ferric uptake regulatio 33.5 1.2E+02 0.0042 22.6 6.5 60 399-459 7-67 (150)
338 3ltm_A Alpha-REP4; protein eng 33.4 1.7E+02 0.0059 22.9 18.8 138 269-421 63-200 (211)
339 2r9g_A AAA ATPase, central reg 33.0 1.8E+02 0.0063 23.0 9.2 36 213-249 27-62 (204)
340 4b4t_S RPN3, 26S proteasome re 32.7 3.2E+02 0.011 25.6 11.6 69 305-373 231-303 (523)
341 3eyy_A Putative iron uptake re 31.8 1.1E+02 0.0037 22.8 5.8 59 399-459 9-67 (145)
342 4fke_A Aminopeptidase N; zinc 31.5 4.4E+02 0.015 26.9 16.6 90 310-403 691-787 (909)
343 1gp8_A Protein (scaffolding pr 31.4 66 0.0022 17.4 3.6 27 447-473 13-39 (40)
344 1bd8_A P19INK4D CDK4/6 inhibit 30.8 85 0.0029 23.1 5.4 14 142-155 10-23 (156)
345 1n11_A Ankyrin; clathrin, BAND 30.4 2.6E+02 0.0088 25.1 9.5 333 103-470 50-399 (437)
346 3mv2_A Coatomer subunit alpha; 30.2 2.7E+02 0.0092 24.1 11.6 52 389-440 185-238 (325)
347 2fe3_A Peroxide operon regulat 30.1 1.7E+02 0.0057 21.7 7.6 44 137-180 27-70 (145)
348 3bge_A Predicted ATPase; struc 30.0 2.1E+02 0.007 22.7 8.2 34 213-246 20-53 (201)
349 1ug3_A EIF4GI, eukaryotic prot 30.0 2.8E+02 0.0095 24.2 9.6 23 240-262 16-38 (339)
350 2f6m_A Suppressor protein STP2 29.9 1E+02 0.0035 19.2 4.3 46 133-179 4-49 (65)
351 3f3f_C Nucleoporin NUP85; stru 29.7 2E+02 0.0068 27.3 8.2 50 168-218 518-567 (570)
352 2xig_A Ferric uptake regulatio 29.3 1.8E+02 0.006 21.7 8.0 59 123-181 18-76 (150)
353 2fu4_A Ferric uptake regulatio 29.2 1.2E+02 0.004 19.6 7.2 60 399-459 7-67 (83)
354 3mwm_A ZUR, putative metal upt 28.1 1.1E+02 0.0037 22.5 5.3 45 206-250 19-63 (139)
355 2w57_A Ferric uptake regulatio 28.0 78 0.0027 23.7 4.5 33 113-145 33-66 (150)
356 3b7b_A Euchromatic histone-lys 27.9 2.2E+02 0.0077 22.5 7.9 217 172-403 14-236 (237)
357 4ets_A Ferric uptake regulatio 27.6 1.7E+02 0.0059 22.1 6.4 56 402-458 26-83 (162)
358 2ijq_A Hypothetical protein; s 27.3 2.1E+02 0.007 21.8 7.8 53 316-368 43-103 (161)
359 3aji_A 26S proteasome non-ATPa 27.2 1.6E+02 0.0056 23.3 6.9 17 106-122 12-28 (231)
360 3f3f_C Nucleoporin NUP85; stru 27.1 2.1E+02 0.0073 27.0 7.9 73 180-254 495-568 (570)
361 2p1h_A APAF-1, apoptotic prote 26.7 1.5E+02 0.005 19.9 6.9 57 118-181 26-82 (94)
362 3pvs_A Replication-associated 26.6 3.7E+02 0.013 24.5 13.4 33 318-350 268-300 (447)
363 2rfa_A Transient receptor pote 26.4 2.2E+02 0.0075 22.5 7.5 18 174-191 8-25 (232)
364 3ctd_A Putative ATPase, AAA fa 26.2 2.5E+02 0.0086 22.5 9.1 37 387-423 48-84 (213)
365 2o03_A Probable zinc uptake re 25.9 1.3E+02 0.0045 21.7 5.3 38 421-458 22-59 (131)
366 3jxi_A Vanilloid receptor-rela 25.8 29 0.00099 28.7 1.9 21 212-232 14-34 (260)
367 4g8k_A 2-5A-dependent ribonucl 25.4 3.2E+02 0.011 23.3 11.8 19 103-121 28-46 (337)
368 1bpo_A Protein (clathrin); cla 24.7 4.2E+02 0.014 24.5 12.3 107 145-255 343-449 (494)
369 2etb_A Transient receptor pote 24.4 1.6E+02 0.0054 24.0 6.4 27 138-164 6-32 (256)
370 2crb_A Nuclear receptor bindin 24.3 1.5E+02 0.0052 20.0 4.6 40 411-450 17-61 (97)
371 3l6a_A Eukaryotic translation 24.0 3.8E+02 0.013 23.7 14.0 67 99-165 14-82 (364)
372 3ljn_A Hypothetical protein; a 23.7 88 0.003 27.4 4.8 17 453-469 250-266 (364)
373 1s6c_A KV4 potassium channel-i 23.6 2.4E+02 0.0082 21.3 9.7 79 60-138 35-118 (183)
374 1ug3_A EIF4GI, eukaryotic prot 23.4 2.8E+02 0.0094 24.2 7.8 25 134-158 14-38 (339)
375 2r9g_A AAA ATPase, central reg 23.1 2.8E+02 0.0097 22.0 8.9 17 352-368 26-42 (204)
376 3e3v_A Regulatory protein RECX 22.1 2.7E+02 0.0094 21.4 10.4 51 287-338 50-100 (177)
377 1oai_A Nuclear RNA export fact 22.1 70 0.0024 19.5 2.5 16 215-230 35-50 (59)
378 2ijq_A Hypothetical protein; s 22.0 2.6E+02 0.009 21.2 8.1 14 423-436 46-59 (161)
379 3bqo_A Telomeric repeat-bindin 21.6 1.8E+02 0.006 23.1 5.2 22 173-194 124-145 (211)
380 3bge_A Predicted ATPase; struc 20.5 3.2E+02 0.011 21.6 7.3 17 352-368 19-35 (201)
381 3ljn_A Hypothetical protein; a 20.1 3.9E+02 0.013 23.1 8.4 16 384-399 251-266 (364)
382 1oyz_A Hypothetical protein YI 20.1 3.7E+02 0.013 22.1 21.6 234 60-315 34-277 (280)
383 3bu8_A Telomeric repeat-bindin 20.0 3.5E+02 0.012 21.8 12.1 48 356-403 88-143 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=299.61 Aligned_cols=408 Identities=10% Similarity=0.057 Sum_probs=340.6
Q ss_pred CCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------
Q 011648 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------- 127 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------- 127 (480)
..|++..+..+...+...++ .|+.+|+.+... ++++.+++.++..|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 34566666667777766665 677888766433 3677888888888888888888888887432221
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH----------------------------
Q 011648 128 -------MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL---------------------------- 172 (480)
Q Consensus 128 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------- 172 (480)
+.+..+|..++..|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 1246778888888888888888888888887764 3344443333
Q ss_pred ----------HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011648 173 ----------LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 173 ----------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 242 (480)
+..|.+.|++++|.++|+++... +++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 34455677788888888887664 578899999999999999999999999999977643 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011648 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998654 6678899999999999999999999999998753 336889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
+|..+|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+..+.+..+|..++..|.+.|++++|.++|+++.+
T Consensus 425 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998744 37789999999999999999999999999998888999999999999999999999999999987
Q ss_pred C----CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 403 K----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 403 ~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++.++++.
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 5 55677 7899999999999999999999999999865 447899999999999999999999999999988765
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-36 Score=295.71 Aligned_cols=406 Identities=10% Similarity=-0.035 Sum_probs=354.4
Q ss_pred CCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011648 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
++...+..++..+.+.++ .|+.+|+.+... .|+..++..++..+.+.|++++|..+|+.+... +++..++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 455667888888887776 899999998754 368899999999999999999999999987533 36889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-c--------------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011648 139 RKYARVQKVEEAVYTFNVMQK-Y--------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
..|.+.|++++|+++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|+++....+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 999999999999999985322 1 2234588999999999999999999999999987544455444
Q ss_pred HHH--------------------------------------HHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011648 204 SIL--------------------------------------LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 204 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 245 (480)
..+ +..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 433 56677889999999999999865 57899999999999
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011648 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
.+.|++++|.++|+++...+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998775 5578889999999999999999999999998653 457889999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011648 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 405 (480)
.+|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|..++.+|.+.|++++|.++|+++.+...
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999987533 26779999999999999999999999999998788999999999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 406 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.++.+.
T Consensus 473 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 473 -YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999999876 66788 789999999999999999999999999887653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.4e-29 Score=231.26 Aligned_cols=372 Identities=12% Similarity=0.075 Sum_probs=314.8
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011648 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
+.|.+.|+.+.+..+ .++..+..+...+.+.|++++|...++......+.+..+|..+...+.+.|++++|+..|+++
T Consensus 16 ~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 16 EAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 378888887766543 577788888888899999999999999998888888999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011648 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 237 (480)
.+.. |.+..+|..+..++...|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+... .+..+
T Consensus 94 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 171 (388)
T 1w3b_A 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHH
Confidence 8864 556778899999999999999999999998876666777888899999999999999999999987642 25778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011648 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|..+...+...|++++|...++++...+ +.+...+..+...+...|++++|...+++..+... .+..++..+...|.+
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHH
Confidence 8899999999999999999999998865 55677888899999999999999999998877532 367888889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011648 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (480)
.|++++|...++++.+.++. +..++..+...+.+.|++++|.+.++++.+..+.+..++..+...+...|++++|.+.+
T Consensus 250 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999886433 56788889999999999999999999999888889999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011648 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 329 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 329 RKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 9998764 3367889999999999999999999999998743 224556666666665554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2e-29 Score=235.05 Aligned_cols=367 Identities=12% Similarity=0.058 Sum_probs=328.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (480)
+...+.+.|++++|.+.++.+....|.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567789999999999999999888888999999999999999999999999998865 67889999999999999999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 011648 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
++|...|+++....+.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999998866777889999999999999999999999999986422 45567778889999999999999999998
Q ss_pred hCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011648 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
... +.+..++..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+.+..+..+. +..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 864 55678899999999999999999999999988643 36788899999999999999999999999886432 5778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011648 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+...|++++|.+.++++.+..+.+..+|..+..++.+.|++++|.+.++++.+.. +.+..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 89999999999999999999999999878889999999999999999999999999999875 34889999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 423 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.++.+.
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998753 446788999999999999999999999999887653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-30 Score=247.18 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhCCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011648 115 IMWDLVNAMRTKRM-LNV-ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 115 ~a~~~~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
.+..+.+.+.+++. .++ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||.||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 34445555555554 333 346666677777777777777777777777777777777777666655542211
Q ss_pred hcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHH
Q 011648 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272 (480)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (480)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 12334567777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011648 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 352 (480)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..+..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=246.63 Aligned_cols=201 Identities=17% Similarity=0.248 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCC---------HHHH
Q 011648 220 REIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR---------IEDA 289 (480)
Q Consensus 220 ~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a 289 (480)
..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444433322 23455555555555555555555555555555555555555555554432 3444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-
Q 011648 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 368 (480)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555555444444444444444444444444444444444444
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011648 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+..||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444444444443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.2e-25 Score=208.12 Aligned_cols=361 Identities=10% Similarity=0.025 Sum_probs=293.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..+..+...+.+.|++++|+.+|+++....+.+..++..+...+...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5788899999999999999999999999998888889999999999999999999999999998876 567888999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCCh---hhHHHHH------------HHHhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011648 175 ALCKSKNVRKAQEIFDCMKDRFIPDS---KTYSILL------------EGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 239 (480)
+|...|++++|...|+++....+.+. ..+..++ ..+...|++++|...|+++.+.. +.+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999988666666 6666664 44888999999999999998764 33678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 011648 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL-------- 311 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 311 (480)
.+..+|...|++++|.+.++++.... +.+..++..+..++...|++++|...|+++.+... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 55788899999999999999999999999986532 244445444
Q ss_pred ----HHHHHHcCCHhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011648 312 ----IGAFCKANKFKNVYRVLKDMNSKGVAPN-----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 312 ----i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
...+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+..+.+..+|..+..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 788999999999999999998853 44 3468888899999999999999999999877888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhCC-----ChHHHHHHHHHH-HHcCC--CC
Q 011648 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING------------LCDKG-----IVSDSCVLLEDM-IEKGI--RP 442 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~~-~~~~~--~p 442 (480)
+|...|++++|...++++.+.... +...+..+..+ |...| +.+++.+.++++ +.... .|
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999986532 56666666533 33334 566778888763 33211 12
Q ss_pred CH-------HHHHHHHHHHHhcCCHHH
Q 011648 443 SG-------ETFGKLRKLLIKEGREDV 462 (480)
Q Consensus 443 ~~-------~~~~~l~~~~~~~g~~~~ 462 (480)
+. ..+..+..+|...|+.+.
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22 245555556655555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.4e-25 Score=212.12 Aligned_cols=402 Identities=11% Similarity=0.033 Sum_probs=310.2
Q ss_pred HHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011648 66 VEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143 (480)
Q Consensus 66 ~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (480)
+...-..+...++ .|+..|+.+.... |++.+|..+...+.+.|++++|.+.++++.+.++.+..++..+...+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3334444445554 8999999887764 5889999999999999999999999999998888888999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH---------------------------------
Q 011648 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--------------------------------- 190 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--------------------------------- 190 (480)
.|++++|+..|+.+.+.+ +++......++..+........+.+.+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999998876 3444433333333332221111111110
Q ss_pred --Hhhc-C---------CCCChhhHHHHHHHHhc---CCChhHHHHHHHHHHH-----cCCCC--------ChhhHHHHH
Q 011648 191 --CMKD-R---------FIPDSKTYSILLEGWGK---DPNLPRAREIFREMVD-----TGCNP--------DIVTYGIMV 242 (480)
Q Consensus 191 --~~~~-~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~~--------~~~~~~~l~ 242 (480)
.+.. . .+.+...+......+.. .|++++|...|+++.+ ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 0100 0 01124444555554444 8999999999999987 31122 345677888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011648 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
..+...|++++|...++.+..... +...+..+..++...|++++|...++++.+... .+..++..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH
Confidence 889999999999999999987753 378888899999999999999999999987643 36778888899999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
+|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+..++..+...|...|++++|...++++..
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999886443 5678888899999999999999999999987777888999999999999999999999998876
Q ss_pred CCCC-CC----HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011648 403 KRFI-PS----MHTFSVLINGLCD---KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 403 ~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 4311 11 3488888999999 999999999999998764 3467788889999999999999999999998876
Q ss_pred CC
Q 011648 475 KE 476 (480)
Q Consensus 475 ~~ 476 (480)
+.
T Consensus 480 ~~ 481 (514)
T 2gw1_A 480 RT 481 (514)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.5e-24 Score=201.89 Aligned_cols=328 Identities=9% Similarity=0.039 Sum_probs=269.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011648 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
.+...+.+.....+.+...+..++..+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444555555666778889999999999999999999999998865 66789999999999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC-h---hhHHHH------------HHHHHhcCCHHHHHHHH
Q 011648 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD-I---VTYGIM------------VDVLCKAGRVDEALGIV 258 (480)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~l------------~~~~~~~g~~~~a~~~~ 258 (480)
..+.+..++..++.++.+.|++++|...|+++.+.. |+ . ..+..+ ...+...|++++|...+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 767788999999999999999999999999999753 44 3 455544 44588999999999999
Q ss_pred HHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011648 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+.... +.+...+..++.+|...|++++|...|+++.+.. +.+..++..+...|...|++++|...++++.+....
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 243 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 243 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 9998764 5678889999999999999999999999998753 347889999999999999999999999999875322
Q ss_pred ChhhHHHH------------HHHHHhCCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 339 NSRTCNII------------LNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 339 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
+...+..+ ...+...|++++|...|+.+.+..+.+ ...|..+..++.+.|++++|...++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444 788999999999999999999855555 34788899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 011648 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP-SGETFGKLR 451 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 451 (480)
.. +.+...|..+..+|...|++++|...++++.+. .| +...+..+.
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 64 237899999999999999999999999999974 34 455555555
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.1e-24 Score=204.77 Aligned_cols=375 Identities=10% Similarity=-0.005 Sum_probs=295.8
Q ss_pred CCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011648 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
|++..+..+...+...++ .|++.|+.+....+ .+..+|..+..++.+.|++++|...|+++...++.+......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 578888777777776665 89999998877643 68899999999999999999999999999988875555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----------------------------------cCC---------CCCHHHHHHHHH
Q 011648 139 RKYARVQKVEEAVYTFNVMQK-----------------------------------YGV---------TQNLAAFNGLLS 174 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~-----------------------------------~~~---------~~~~~~~~~ll~ 174 (480)
..+........+.+.+..+.. ... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 544443333333222211110 000 112444444444
Q ss_pred HHHc---cCChhhHHHHHHHhhc-----C--C-------CCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011648 175 ALCK---SKNVRKAQEIFDCMKD-----R--F-------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 175 ~~~~---~g~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 237 (480)
.+.. .|++++|...|+++.. . . +.+..++..+...+...|++++|...++++.+.+.. ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 4444 8999999999999876 2 1 334567888999999999999999999999987543 888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011648 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++.+.... +...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHH
Confidence 8899999999999999999999998865 556778899999999999999999999999886433 67788889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh---cC
Q 011648 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD------ADTYTMMIKMFCQ---GG 388 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g 388 (480)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+ ..++..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876332 56788889999999999999999999988733333 4489999999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
++++|...++++..... .+..++..+...+...|++++|...++++.+.. |+..
T Consensus 430 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTME 483 (514)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccH
Confidence 99999999999987653 367888999999999999999999999999854 4543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.3e-23 Score=199.26 Aligned_cols=400 Identities=11% Similarity=0.093 Sum_probs=298.9
Q ss_pred HHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011648 64 EIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKY 141 (480)
Q Consensus 64 ~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 141 (480)
..+...-..+...++ .|+..|+.+....+ .++.+|..+...+.+.|++++|++.|+++...++.+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344444455555555 89999988877654 68889999999999999999999999999988888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-------CCChh-------------
Q 011648 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-------IPDSK------------- 201 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~------------- 201 (480)
...|++++|+..|+.+.. .|+.. ...+..+...+....|...++.+.... .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999964322 22221 122334444455566777777664421 11111
Q ss_pred -----------------hHHHHHHHHhcC--------CChhHHHHHHHHHHHcCCCCC-------hhhHHHHHHHHHhcC
Q 011648 202 -----------------TYSILLEGWGKD--------PNLPRAREIFREMVDTGCNPD-------IVTYGIMVDVLCKAG 249 (480)
Q Consensus 202 -----------------~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~~g 249 (480)
....+...+... |++++|..+++++.+.... + ..++..+...+...|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcc
Confidence 222222222222 3788899999998865322 2 234666777888899
Q ss_pred CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011648 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
++++|...++.+.... |+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998864 5578888899999999999999999999887643 367888999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----
Q 011648 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF---- 405 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 405 (480)
++.+.... +...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...++++.+...
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 99886433 5678888999999999999999999999987788888999999999999999999999998875421
Q ss_pred -CCCHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011648 406 -IPSMHTFSVLINGLCDK----------GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 406 -~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
......+......+... |++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11223344555667777 99999999999998764 3467888899999999999999999999998876
Q ss_pred CC
Q 011648 475 KE 476 (480)
Q Consensus 475 ~~ 476 (480)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 54
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.9e-21 Score=177.55 Aligned_cols=331 Identities=10% Similarity=0.011 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..+..+...+.+.|++++|...|+++....+.+..++..+...+...|++++|+..++.+.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456777888888889999999999998888888788888888888889999999999998888764 4567788888888
Q ss_pred HHccCChhhHHHHHHHhhcCCC---CChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011648 176 LCKSKNVRKAQEIFDCMKDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|++.....+ .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 8888999999988888877545 45555554421100 001122233444455555
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011648 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|.+.++.+.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544432 2334444445555555555555555555554432 2244445555555555555555555555554
Q ss_pred hCCCCCChhhH------------HHHHHHHHhCCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHH
Q 011648 333 SKGVAPNSRTC------------NIILNGLIGRGETDEAYRVFRRMIKLCEADAD----TYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 333 ~~~~~p~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~ 396 (480)
+.... +...+ ..+...+.+.|++++|...++++.+..+.+.. .+..+..++...|++++|...
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 43211 11111 12245566777777777777777664444442 244566777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011648 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+..
T Consensus 295 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 777766532 256677777777777777777777777777643 123444555554443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.9e-21 Score=187.96 Aligned_cols=367 Identities=12% Similarity=0.050 Sum_probs=280.4
Q ss_pred CCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011648 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
-++..+..+...+...++ .|++.|+.+....+ .++.++..+...+...|++++|...|+.+ ...+ ......+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVL-SLNG---DFDGASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCC---CCChHHH
Confidence 356666666666655554 89999999877654 68899999999999999999999999743 3333 1122234
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CCCCHH------------------------------HHHHHHHHHHc----
Q 011648 139 RKYARVQKVEEAVYTFNVMQKYG------VTQNLA------------------------------AFNGLLSALCK---- 178 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~---- 178 (480)
..+...+...+|...++.+.... ..|+.. ....+...+..
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 45555666678888888775431 112221 22222222222
Q ss_pred ----cCChhhHHHHHHHhhcCCCCChh-------hHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011648 179 ----SKNVRKAQEIFDCMKDRFIPDSK-------TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247 (480)
Q Consensus 179 ----~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 247 (480)
.|++++|..+++++....+.+.. ++..+...+...|++++|...+++..+.. |+...+..+...+..
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 24788999999999886555544 46677788889999999999999999864 557888899999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011648 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
.|++++|...++++.... +.+..++..+..++...|++++|...++++.+... .+...+..+...+...|++++|...
T Consensus 289 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 55688899999999999999999999999987643 3567888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhc----------CCHH
Q 011648 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------ADADTYTMMIKMFCQG----------GELE 391 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~----------g~~~ 391 (480)
++++.+.... +...+..+...+...|++++|...++.+.+..+ .....+..+...+... |+++
T Consensus 367 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 367 FNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 9999886433 567888999999999999999999999887211 2223345556777777 9999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011648 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
+|...++++.+... .+...+..+...|...|++++|...|+++.+..
T Consensus 446 ~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 446 AAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999988653 367889999999999999999999999999754
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.1e-20 Score=173.78 Aligned_cols=318 Identities=9% Similarity=0.006 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011648 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777777777777777777777654 455667777777777777777777777777665455666677777777
Q ss_pred hcCCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH
Q 011648 211 GKDPNLPRAREIFREMVDTGCN--PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
...|++++|...+++..+.... .+...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 7777777777777777654210 01122221111100 1123344678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011648 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998764 347888999999999999999999999999987433 678899999999999999999999999998
Q ss_pred cCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHH
Q 011648 369 LCEADADTYTMM------------IKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCVLL 432 (480)
Q Consensus 369 ~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~ 432 (480)
..+.+...+..+ ...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 777777765433 67789999999999999999886532 33 33556788999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 433 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+++.+.. +.+..++..+..++...|++++|.+.+++..++.+.
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999864 347888999999999999999999999999988764
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.5e-20 Score=169.26 Aligned_cols=294 Identities=10% Similarity=0.010 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3455566666666667777777777777766666555566666666667777777777776666653 445566666666
Q ss_pred HHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011648 175 ALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 175 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.+...| ++++|...|++.....+.+...|..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666666544555556666666666666666666666666554321 23444445555555555555
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011648 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
|.+.+++..... +.+...+..+...+...|++++|...+++..+...... + .
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~------------~ 229 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG---------------N------------E 229 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------C------------S
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------c------------c
Confidence 555555555442 23344444444444444555554444444432100000 0 0
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011648 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 413 (480)
.........+..+...+...|++++|...++++.+..+.+...+..+..+|...|++++|.+.++++.+... .+...+.
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 308 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVT 308 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHH
Confidence 000122345556666666666666666666666655555566666666666666666666666666655432 2455555
Q ss_pred HHHHHH
Q 011648 414 VLINGL 419 (480)
Q Consensus 414 ~l~~~~ 419 (480)
.+..++
T Consensus 309 ~l~~~~ 314 (330)
T 3hym_B 309 MLGHCI 314 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.9e-20 Score=167.33 Aligned_cols=293 Identities=9% Similarity=-0.006 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011648 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 242 (480)
+.+...+..+...+...|++++|.++|+++....+.+...+..++.++...|++++|..+++++.+... .+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 444555666666777777777777777777665566666777777777777777777777777776532 2556677777
Q ss_pred HHHHhcC-CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011648 243 DVLCKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 243 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
..+...| ++++|...+++..... +.+...+..+..++...|++++|...++++.+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 7888888888777654 445667777888888888888888888887765322 456666678888888888
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHH
Q 011648 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC---------EADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
++|...+++..+.... +...+..+...+...|++++|...++++.+.. +....++..+..+|...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 8888888888876433 56778888888889999999999998887722 4556899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 011648 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL-IKEGRED 461 (480)
Q Consensus 393 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 461 (480)
|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999886533 67889999999999999999999999998753 33667777888777 4566654
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=5.8e-17 Score=155.43 Aligned_cols=333 Identities=11% Similarity=0.018 Sum_probs=190.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 011648 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEA 150 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 150 (480)
.|+..|+.+... .++..+..+...|.. .+++++|.++|++....+ ++..+..|...|.. .+++++|
T Consensus 61 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 61 QAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 566666655443 245556666666665 566666666666665554 45555556666655 5566666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc----CCChhHHHHH
Q 011648 151 VYTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREI 222 (480)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 222 (480)
+..|++..+.| ++..+..|...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|.++
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 66666665543 34555555555554 55666666666665542 245555555555555 5666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc----cCCHHHHHHHHH
Q 011648 223 FREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFL 294 (480)
Q Consensus 223 ~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 294 (480)
|++..+.| +...+..+...|.. .+++++|...+++....+ +...+..+...|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 66665543 34455555555554 556666666666665543 33344445555544 566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHH
Q 011648 295 EMEKNGILADVAMYNALIGAFCKA-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG---ETDEAYRVFRRM 366 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 366 (480)
+..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.++|++.
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 665543 344555555555554 56666666666666543 3344455555555444 556666666665
Q ss_pred HhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHc
Q 011648 367 IKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 438 (480)
.+. .++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.
T Consensus 358 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 358 AAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 552 345556666666665 566666666666666554 44555556655555 56666666666666654
Q ss_pred C
Q 011648 439 G 439 (480)
Q Consensus 439 ~ 439 (480)
+
T Consensus 433 ~ 433 (490)
T 2xm6_A 433 D 433 (490)
T ss_dssp H
T ss_pred C
Confidence 4
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-17 Score=161.76 Aligned_cols=406 Identities=10% Similarity=0.070 Sum_probs=297.3
Q ss_pred CCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011648 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
-+......++.. ...++ .|..+|+.+.... +.+...|..++..+.+.|++++|..+|+++....| +...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 355666666664 33443 8999999997764 47899999999999999999999999999988775 777888877
Q ss_pred HHH-HHcCCHHHHHH----HHHHHHhc-CCC-CCHHHHHHHHHHHHc---------cCChhhHHHHHHHhhcCCCCC--h
Q 011648 139 RKY-ARVQKVEEAVY----TFNVMQKY-GVT-QNLAAFNGLLSALCK---------SKNVRKAQEIFDCMKDRFIPD--S 200 (480)
Q Consensus 139 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~--~ 200 (480)
... ...|+.+.|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++... .+.+ .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 644 45677777665 77766543 443 356778887776654 6889999999999887 2222 2
Q ss_pred hhHHHHHHHH-------------hcCCChhHHHHHHHHHH------HcC---CCCC--------hhhHHHHHHHHHhc--
Q 011648 201 KTYSILLEGW-------------GKDPNLPRAREIFREMV------DTG---CNPD--------IVTYGIMVDVLCKA-- 248 (480)
Q Consensus 201 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~l~~~~~~~-- 248 (480)
..|....... .+.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3343322211 13456777777776632 111 2333 23454444333222
Q ss_pred --CCH----HHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHH
Q 011648 249 --GRV----DEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-------ENRIE-------DAVDTFLEMEKNGILADVAMY 308 (480)
Q Consensus 249 --g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~ 308 (480)
++. .++..+|++..... +.+...|..++..+.. .|+++ +|..++++..+.-.+.+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47778888887753 5567888888888775 79987 899999999863234468889
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 011648 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FC 385 (480)
Q Consensus 309 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~ 385 (480)
..++..+.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+.++|.++|++..+..+.+...|...+.. +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999986 343 24788888888899999999999999998655555555443333 34
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCHHH
Q 011648 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI-RPS--GETFGKLRKLLIKEGREDV 462 (480)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~ 462 (480)
..|++++|..+|+...+... .+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+......|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 68999999999999987642 3688999999999999999999999999998642 332 4578888888888999999
Q ss_pred HHHHHHHHHhccC
Q 011648 463 LKFLQEKMNLLVK 475 (480)
Q Consensus 463 a~~~~~~~~~l~~ 475 (480)
+..+.+++.+.-+
T Consensus 482 ~~~~~~r~~~~~p 494 (530)
T 2ooe_A 482 ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCc
Confidence 9999998876543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.4e-19 Score=167.07 Aligned_cols=289 Identities=11% Similarity=0.034 Sum_probs=207.5
Q ss_pred cCChhhHHH-HHHHhhcCCCC----ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011648 179 SKNVRKAQE-IFDCMKDRFIP----DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 179 ~g~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.|++++|.. .+++.....+. +...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 66654442111 245566677777777777777777777776532 255666667777777777777
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHc
Q 011648 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA---------------LIGAFCKA 318 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~ 318 (480)
|...++++.... +.+..++..+..++...|++++|...++++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776654 445666777777777777777777777777665322 1111111 23333488
Q ss_pred CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011648 319 NKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (480)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+.+..+|..+...+...|++++|...+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998864332 46788889999999999999999999999877888999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011648 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP----------SGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+++.+... .+...+..+...|.+.|++++|...++++.+..... ...+|..+..++...|++++|..++
T Consensus 275 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 99987653 367889999999999999999999999998643211 2678999999999999999999887
Q ss_pred HHHH
Q 011648 468 EKMN 471 (480)
Q Consensus 468 ~~~~ 471 (480)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 6443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.1e-16 Score=151.55 Aligned_cols=364 Identities=11% Similarity=0.044 Sum_probs=308.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 011648 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEAV 151 (480)
Q Consensus 80 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 151 (480)
++..+...... .++..+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555544333 378888888888887 899999999999998875 67889999999999 89999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhc----CCChhHHHHHH
Q 011648 152 YTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREIF 223 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 223 (480)
.+|++..+.| ++..+..|...|.. .+++++|...|++.... -+...+..+...|.. .+++++|.+.|
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998865 66777788888887 88999999999998763 267778888888877 88999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc----cCCHHHHHHHHHH
Q 011648 224 REMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLE 295 (480)
Q Consensus 224 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 295 (480)
++..+.| +...+..+...|.. .+++++|.+.+++....+ +...+..+...|.. .+++++|..+|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999875 67888888888888 899999999999998865 55677778888775 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-----CChhHHHHHHHHH
Q 011648 296 MEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRM 366 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 366 (480)
..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|..++++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98764 56677778888887 899999999999998864 456777788888877 8999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 011648 367 IKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 439 (480)
.+. .+...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.|
T Consensus 323 ~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 323 AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 873 45678888888888866 7899999999999875 77889999999988 899999999999999876
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 011648 440 IRPSGETFGKLRKLLIK----EGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 440 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~l~ 474 (480)
++..+..+...|.+ .++.++|.+++++..+.+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 57778888888888 899999999999998876
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.3e-20 Score=169.00 Aligned_cols=264 Identities=11% Similarity=-0.004 Sum_probs=178.2
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011648 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 169 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
+..+...+...|++++|...|+++....+.+..++..+..++...|++++|...++++.+... .+..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 344444555555555555555555444444445555555555555555555555555544321 2344455555555555
Q ss_pred CCHHHHHHHHHHhHhCCCCcCHHHH----------------HHHHHHhhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 011648 249 GRVDEALGIVKSMDSTVCRPTSFIY----------------SVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNAL 311 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 311 (480)
|++++|.+.++++.... +.+...+ ..+... ...|++++|...++++.+..... +..++..+
T Consensus 146 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555554432 1111111 122233 37888999999999887753221 47788888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011648 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
...|.+.|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..+..+|.+.|+++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999999887632 256788889999999999999999999998877888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011648 392 KAFKVWKYMKLKRFIP----------SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+|...++++.+..... ...+|..+..+|...|+.++|..++++.+
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999887643211 26889999999999999999998877443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=7.8e-20 Score=168.66 Aligned_cols=268 Identities=10% Similarity=0.013 Sum_probs=205.0
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
+...+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|...++++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577778888888888888888888876542 356777788888888888888888888877654 445777788888
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHH
Q 011648 279 TYGVENRIEDAVDTFLEMEKNGIL---------ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILN 348 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 348 (480)
+|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888887654211 01223344577888899999999999999886433 15778888999
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011648 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
.+...|++++|...++++.+..+.+..+|..+..+|...|++++|...++++.+... .+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999988888899999999999999999999999999988653 2588899999999999999999
Q ss_pred HHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011648 429 CVLLEDMIEKGIR-----------PSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 429 ~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
...++++++.... .+...|..+..++...|+.+.+.+..++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999864211 1357788999999999999999888765
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=9.7e-20 Score=168.00 Aligned_cols=265 Identities=9% Similarity=-0.042 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011648 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 246 (480)
..+..+...+.+.|++++|...|+++....+.+..+|..+...+...|++++|...|++..+... .+..++..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34555566666666666666666666665555666666666666666667777766666665432 24566666666677
Q ss_pred hcCCHHHHHHHHHHhHhCCCCcC----------HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 011648 247 KAGRVDEALGIVKSMDSTVCRPT----------SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAF 315 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 315 (480)
..|++++|...++++.... +.+ ...+..+...+...|++++|...++++.+.... .+..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777776665532 111 223344577888889999999999988776422 1578888888999
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011648 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (480)
...|++++|...++++.+.... +..++..+..++...|++++|...++++.+..+.+..++..+..+|...|++++|..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998876432 577889999999999999999999999998778889999999999999999999999
Q ss_pred HHHHHHhCCCC-----------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 011648 396 VWKYMKLKRFI-----------PSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 396 ~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (480)
.++++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99988764211 1257888999999999999888877664
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=4.1e-18 Score=154.39 Aligned_cols=278 Identities=11% Similarity=0.020 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+......+...|++++|..+|+++....+.+..++..+...+...|++++|...++++.+.. +.+..++..+..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556667778888888888888888887777777888888888888888888888888887764 55677777788888
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM-VD-VLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a 254 (480)
...|++++|...++++....+.+...+..+.... |+......+ .. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 8888888888888887765444444444431100 000000111 11 13444455555
Q ss_pred HHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011648 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555544432 2244445555555555555555555555554432 224455555555666666666666666665554
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA------------DADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
.. .+...+..+...+...|++++|.+.++++.+..+. +..+|..+..++...|++++|..++++.
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 13455566666666666666666666666553233 4566666777777777777777666543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=4.5e-18 Score=154.10 Aligned_cols=152 Identities=9% Similarity=0.014 Sum_probs=73.7
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHH
Q 011648 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 4455555566665555554322 2444555555555555555555555555544321 1334444455555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChHHH
Q 011648 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-----------SMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a 428 (480)
...++++.+..+.+..++..+..+|...|++++|.+.++++.+..... +...|..+..++...|++++|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 555555544444444455555555555555555555555444322110 233444444444444555444
Q ss_pred HHHHH
Q 011648 429 CVLLE 433 (480)
Q Consensus 429 ~~~~~ 433 (480)
..+++
T Consensus 306 ~~~~~ 310 (327)
T 3cv0_A 306 ELTYA 310 (327)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 44443
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.5e-19 Score=161.15 Aligned_cols=290 Identities=10% Similarity=0.094 Sum_probs=132.4
Q ss_pred HHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 011648 65 IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144 (480)
Q Consensus 65 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (480)
.+..+|..+.. -+.|.++++.+ +++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 34444444332 23788888877 34469999999999999999999999653 4677899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHH
Q 011648 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988877764 4567888999999999999999887774 4677899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC
Q 011648 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304 (480)
Q Consensus 225 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (480)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 47999999999999999999999988 278899999999999999999965554422 34
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh--cCC------CCHHH
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCE------ADADT 376 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~------~~~~~ 376 (480)
+.-...++..|.+.|.+++|..+++...... +-....|+-+...|++- +++...+.++...+ ..+ .+...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4556678899999999999999999988764 33566777777666653 34444444433333 122 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 011648 377 YTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~ 397 (480)
|..++..|...++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 889999999999999887643
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.8e-15 Score=145.19 Aligned_cols=373 Identities=9% Similarity=0.026 Sum_probs=271.6
Q ss_pred CCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-C--C
Q 011648 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESL-AKIRQYQIMWD----LVNAMRTK-R--M 128 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~--~ 128 (480)
.+-++......+......+. .|..+|+.+.... |++..|...+... ...|+++.|.+ +|+..... | +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence 44566666666666655554 8999999987664 5788888888644 45688877765 77766542 3 3
Q ss_pred CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HccCChhhHH
Q 011648 129 LNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-------------CKSKNVRKAQ 186 (480)
Q Consensus 129 ~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~ 186 (480)
.+...|...+....+ .|+++.|..+|++..+.........|....... ...+++..|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 567888888887665 789999999999998831111123444332211 1345577777
Q ss_pred HHHHHhh------cC----CCCC--------hhhHHHHHHHHhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHH
Q 011648 187 EIFDCMK------DR----FIPD--------SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 187 ~~~~~~~------~~----~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~ 240 (480)
.++.... +. .+|+ ...|...+...... ++. ..+..+|++..... +-+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7776532 21 2443 24555555443322 233 37788899988753 336778888
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC-H
Q 011648 241 MVDVLCK-------AGRVD-------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-V 305 (480)
Q Consensus 241 l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 305 (480)
++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 8887775 79987 89999999986323556888999999999999999999999999985 343 3
Q ss_pred -HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH-HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011648 306 -AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN-GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 306 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
..|...+..+.+.|+.++|..+|++..+.... +...+..... .+...|+.++|..+|+...+..+.++..|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 57888888888999999999999999986322 2233332222 23468999999999999998777889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 384 FCQGGELEKAFKVWKYMKLKRF-IP--SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998642 22 2558888888888899999999999999864
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=6.3e-17 Score=143.31 Aligned_cols=250 Identities=10% Similarity=0.062 Sum_probs=122.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCh
Q 011648 139 RKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.....|+++.|+..++..... .|+ ......+..+|...|+++.|...++. ..+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3344556666666655554332 122 12334445555666666555543322 2344445555555555555555
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011648 217 PRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 217 ~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~--------------------------- 128 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD--------------------------- 128 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC---------------------------
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC---------------------------
Confidence 555555555554443332 33334444555555555555555543 23
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhCCChhHHHHHHHHHHhcCCC
Q 011648 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC---NIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
+...+..++..+.+.|++++|...++++.+.. |+.... ...+..+...|++++|..+|+++.+..+.
T Consensus 129 --------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~ 198 (291)
T 3mkr_A 129 --------SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198 (291)
T ss_dssp --------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC
T ss_pred --------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC
Confidence 34444444444444455555555444444432 221100 11112222335555566666555555555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHH
Q 011648 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD-SCVLLEDMIE 437 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 437 (480)
+...++.+..++.+.|++++|...++++.+.... +..++..++..+...|+.++ +.++++++.+
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555666666666666666666666655554322 45555555555555555544 3455555554
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.6e-17 Score=144.87 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=194.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011648 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (480)
+.-....|+++.|+..++......+ ...+....+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 4455678999999999988766555 3345667789999999999999987654 2 366778889999999999999
Q ss_pred hhHHHHHHHhhc-C-CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011648 183 RKAQEIFDCMKD-R-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 183 ~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++|.+.++++.. . .+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999876 3 355677888888999999999999999988 35778899999999999999999999999
Q ss_pred hHhCCCCcCHHHH---HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011648 261 MDSTVCRPTSFIY---SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 261 ~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
+.... |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+..+.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 98764 432211 22334444557778888888777765 3446677777777777777777777777777765332
Q ss_pred CChhhHHHHHHHHHhCCChhH-HHHHHHHHHhcCCCCHHH
Q 011648 338 PNSRTCNIILNGLIGRGETDE-AYRVFRRMIKLCEADADT 376 (480)
Q Consensus 338 p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~ 376 (480)
+..++..++..+...|+.++ +.++++++.+..|.++.+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 55666677777777777654 456777776655555544
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=9e-16 Score=146.60 Aligned_cols=367 Identities=9% Similarity=-0.034 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 011648 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---- 160 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 160 (480)
+.....||.+...+...|++++|++.|++..+. .+....+|..+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999886532 2356778999999999999999999998877542
Q ss_pred -C--CCCCHHHHHHHHHHHHc--cCChhhHHHHHHHhhcCCCCChhhHHHHHHH---HhcCCChhHHHHHHHHHHHcCCC
Q 011648 161 -G--VTQNLAAFNGLLSALCK--SKNVRKAQEIFDCMKDRFIPDSKTYSILLEG---WGKDPNLPRAREIFREMVDTGCN 232 (480)
Q Consensus 161 -~--~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~ 232 (480)
+ ......++.....++.. .+++++|...|++..+..|.++..+..+..+ +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11234566655555544 4568999999999887656677776666555 3456788889999988887642
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011648 233 PDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (480)
.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+... .+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 245555555544444 467788999999887764 56677888899999999999999999999887632 356666
Q ss_pred HHHHHHHHHc-------------------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 011648 309 NALIGAFCKA-------------------NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 309 ~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
..+...|... +..+.|...++...+.... +...+..+...+...|++++|+..|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555332 2356677777777765332 5567888888999999999999999998874
Q ss_pred CCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 370 CEADAD---TYTMMIK-MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 370 ~~~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
.+++.. .+..+.. .+...|+.++|+..+++..+.. |+...... ....+.+++++.+... +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 333322 2233332 2346789999999999888764 44322221 2234455666666543 34677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|..+..++...|++++|.+.+++..++++.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999998887653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.2e-18 Score=154.84 Aligned_cols=284 Identities=12% Similarity=0.108 Sum_probs=140.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHH
Q 011648 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 187 (480)
-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.
T Consensus 14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 36788999999999983 346999999999999999999999965 3577789999999999999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 011648 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 87776664 5567889999999999999999998885 367789999999999999999999999977
Q ss_pred cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011648 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 36899999999999999999999998 278999999999999999999966554432 2444466789
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHH
Q 011648 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP------SMHTFSVLINGLC 420 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~~~~~l~~~~~ 420 (480)
..|.+.|.+++|..+++......+.....|+.|.-.|++- ++++..+.++....+ +++| +...|..++..|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986688889999998888875 455555544443322 3333 4567999999999
Q ss_pred hCCChHHHHHH
Q 011648 421 DKGIVSDSCVL 431 (480)
Q Consensus 421 ~~g~~~~a~~~ 431 (480)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988773
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=2.3e-14 Score=144.77 Aligned_cols=365 Identities=13% Similarity=0.078 Sum_probs=186.1
Q ss_pred CCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH
Q 011648 58 GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134 (480)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (480)
.-..+|+.+....+.+...+. +|+++++.+...+. |..+....+.++....+. +.....++..+..... .
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~ 1052 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------A 1052 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------H
Confidence 345677777777777776665 78888888764432 445566666665544444 2333333333332110 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011648 135 CIIMRKYARVQKVEEAVYTFNVMQKYG---------------------VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 193 (480)
.-+...+...|.+++|..+|++..... -..++.+|..+..++...|++++|.+.|.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 223444445555555555555431000 0012334444444444444444444444332
Q ss_pred cCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHH
Q 011648 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
.|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...+
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 134444444444444444444444444444332 11111122444444444444322221 1 2233334
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++.. +..+|..+..+|...
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhh
Confidence 44455555555555555555443 234555555555555555555554441 334555555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChHHHHHH
Q 011648 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK--GIVSDSCVL 431 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~ 431 (480)
|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|..+...|++. ++..++.++
T Consensus 1264 ~Ef~LA~~cgl~----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hHHHHHHHHHHh----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555555444432 22455666777888888888888888887776554 22445666666666553 445555555
Q ss_pred HHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 011648 432 LEDMIEKGIRP------SGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 432 ~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
|..-. +++| +...|..+...|.+.|+++.|..
T Consensus 1339 f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1339 FWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54332 2222 45568888888888888887774
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-15 Score=144.64 Aligned_cols=361 Identities=13% Similarity=0.034 Sum_probs=245.5
Q ss_pred HHHHHHHHHHhhCch--HHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--
Q 011648 64 EIVEDVLEKFRNAGT--LAFCFFKWAEKQ-------QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-----R-- 127 (480)
Q Consensus 64 ~~~~~~l~~~~~~~~--~A~~~f~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-- 127 (480)
..++.+-..+...|+ +|++.|+.+... ...+....+|+.+..+|...|++++|...+++.... +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345444444444454 788888776431 123346789999999999999999999999887542 1
Q ss_pred -CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHccCChhhHHHHHHHhhcCCCCChh
Q 011648 128 -MLNVETFCIIMRKYARVQ--KVEEAVYTFNVMQKYGVTQNLAAFNGLLSA---LCKSKNVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 128 -~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~ 201 (480)
+....++.....++...| ++++|+..|++..+.. |.++..+..+..+ +...++.++|.+.+++..+..+.+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 235677777777776654 6999999999998875 4566666655554 34567888999999888776566777
Q ss_pred hHHHHHHHHh----cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHH
Q 011648 202 TYSILLEGWG----KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277 (480)
Q Consensus 202 ~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (480)
++..+...+. ..+++++|.+.+++...... .+...+..+...|...|++++|...+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 7776665544 35678999999999887643 367788899999999999999999999998764 44566676666
Q ss_pred HHhhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011648 278 HTYGVE-------------------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 278 ~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
.+|... +..+.|...+++..+... .+..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 655322 235677788887766532 355678888899999999999999999998865443
Q ss_pred Chh--hHHHHHH-HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011648 339 NSR--TCNIILN-GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 415 (480)
... .+..+.. .....|+.++|+..+++..+..+.+.... +....+.++++.....++ .+..+|..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p-~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKNG-ADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC--CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 221 1222222 24578999999999999988544443221 223445556666655542 367899999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC
Q 011648 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
...|...|++++|++.|+++++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999764
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=166.41 Aligned_cols=119 Identities=10% Similarity=0.126 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMV---DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
-..||+++|++||+.|++++|.++|++|. ..|+.||..|||+||++|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34566667777777777777776666654 345667777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011648 276 LVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 276 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777665 35666777777777777777777766654443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=9.6e-14 Score=140.36 Aligned_cols=325 Identities=13% Similarity=0.126 Sum_probs=218.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
.++.--...+..|...|.+.+|+++++++...+. -+...-+.++.+..+. +..+..++.+.+... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 4555556677788888899999999988874432 3445556677666666 556666666665422 1 223
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011648 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (480)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 56667778888888888887632 2222233332 5567777777776542 466777888888888888
Q ss_pred HHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011648 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
++|.+.|.+. .+...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888887553 356667778888888888888888887766653 23333344777777777777544332
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011648 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 411 (480)
. .++...|..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++.. +..+
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2 245556667777788888888888888774 367778888888888888888877662 5567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011648 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|..+..+|...|++..|..+... +..++..+..++..|.+.|.+++|..+++....++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 77777777777777766665442 33456666677777777777777777777665554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=165.02 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.||+++|.+|++.|++++|.++|+.|.+ +..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3556666666666666666666555432 455666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011648 417 NGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 417 ~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.++++.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666553 4556666666666666666666655544433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=4.9e-16 Score=131.49 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=151.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011648 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
++++..+..+...+.+.|++++|...|++....+|.+...+..+...+.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45777888888999999999999999999999888889999999999999999999999999998875 56778888888
Q ss_pred HHHHcc-----------CChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011648 174 SALCKS-----------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 174 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 242 (480)
.++... |++++|...|++..+..|.+...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 888888888888777656677778888888888888888888888887766 5677777788
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011648 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888877654 4456677777777888888888877776654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-15 Score=131.84 Aligned_cols=226 Identities=10% Similarity=0.051 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCC--CcC----HHHH
Q 011648 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC--RPT----SFIY 273 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 273 (480)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.+++...... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666667777777777777777776665 5666677777777777777777777777655321 111 4566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+..++...|++++|...+++..+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 777777777777777777777776642 332 3455667778888888887775222 455677777778888
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 011648 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
|++++|...++++.+..+.+..++..+..+|...|++++|...++++.+... .+...|..+...+...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888876677788888888888888888888888888877642 257778888888888888888888888
Q ss_pred HHHHc
Q 011648 434 DMIEK 438 (480)
Q Consensus 434 ~~~~~ 438 (480)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87753
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-15 Score=132.12 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC---CC----hhhHH
Q 011648 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI---PD----SKTYS 204 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~----~~~~~ 204 (480)
..+..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+++.....+ ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666555544 4555555555566666666666666555543111 11 34455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC
Q 011648 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.+...+...|++++|...|++..+.. |+. ..+...|++++|...++.+.... +.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~--------------- 138 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEK--------------- 138 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHH---------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cch---------------
Confidence 55555555555555555555555432 221 22333344444444444444332 222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 011648 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++
T Consensus 139 --------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 139 --------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333444444444555555555555554443221 34445555555555555555555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
.+.+..+.+...|..+..++...|++++|...++++.+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55554445555555555555555555555555555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.1e-15 Score=126.51 Aligned_cols=208 Identities=13% Similarity=0.024 Sum_probs=107.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011648 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 44445555555555555555555555555443 33444555555555555555555555555554321 13444444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011648 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
.+...+. .. +. .....|++++|+..+++..+..|.+...+..+..++...|++++|
T Consensus 82 ~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 82 AYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 4444400 00 00 000116666666666666665566666666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...|+++.+.+ .+...+..+..++...|++++|+..++++++.. +.+...+..+..++...|++++|.+.+++.
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666655 466666666666666667777766666666543 224555666666666666666666666554
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=8.1e-15 Score=138.42 Aligned_cols=368 Identities=10% Similarity=-0.005 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CHHH
Q 011648 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-----KVEE 149 (480)
Q Consensus 78 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 149 (480)
..|+++|+.+... + ++..+..+...+...|+. ++|.++|++.... ++..+..+...+...+ ++++
T Consensus 20 ~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 20 VTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 3899999888655 2 445566667777777888 9999999998765 6666777777555555 7889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh---HHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 011648 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK---AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
|+..|++..+.|. ++ .+..|...|...+..++ +.+.+..... ..++..+..+...|...+.++++......+
T Consensus 93 A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 93 AESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998773 33 56667777776655444 4444444433 124667778888888888776666654444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHC
Q 011648 227 VDTGCNPDIVTYGIMVDVLCKAG---RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~ 299 (480)
.+.-...+...+..+...|...| +.++|++.|+.....| +++...+..+...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 43322334558888999999999 9999999999999887 56666666777777665 79999999999988 3
Q ss_pred CCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-----ChhHHHHHHHHHHhcCC
Q 011648 300 GILADVAMYNALIGA-F--CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-----ETDEAYRVFRRMIKLCE 371 (480)
Q Consensus 300 ~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 371 (480)
-+...+..+... + ...++.++|...|++..+.| +...+..+...|. .| +.++|.++|++.. +
T Consensus 246 ---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 246 ---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp ---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence 356667777766 4 46899999999999999876 5667777777776 45 9999999999987 6
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCC
Q 011648 372 ADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~ 443 (480)
.++..+..|...|.. ..++++|...|++..+.|. ......+...|.. ..+.++|...|+...+.|. ++
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~ 391 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PE 391 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HH
Confidence 788888888888877 3499999999999998873 3455666666664 4589999999999998874 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011648 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.......+......++.++|.++.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 332222333333345677888888777654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.9e-14 Score=126.47 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=186.8
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC--HHHHHHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVL 276 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 276 (480)
|...+......+...|++++|+..|++..+.... +...+..+...+...|++++|...+++....+..++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3456667788888999999999999999876432 455888888899999999999999999887431121 3347888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011648 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
..++...|++++|...+++..+... .+..++..+...|...|++++|...+++..+.... +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887543 35678888888999999999999999888876322 455666666244445699
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhCCChH
Q 011648 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKR-FIPS------MHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 426 (480)
++|.+.++++.+..+.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999888777778888888888888888 888888888877542 1123 256777888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 011648 427 DSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 427 ~a~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+|...++++.+.. +.+......+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 9999999988754 22444444443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2.4e-14 Score=130.99 Aligned_cols=248 Identities=8% Similarity=0.039 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
+..+|+.+...+.+.|++++|+..++++...++.+..+|..+...+...|+ +++|+..|+++.+.+ +.+..+|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356788888899999999999999999999999899999999999999997 999999999999876 567889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHH
Q 011648 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDE 253 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 253 (480)
++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999877888999999999999999999999999999987543 67888888888888 566577
Q ss_pred H-----HHHHHHhHhCCCCcCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------
Q 011648 254 A-----LGIVKSMDSTVCRPTSFIYSVLVHTYGVEN--RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN------- 319 (480)
Q Consensus 254 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 319 (480)
| +..+++..... +-+...|..+..++...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 47777777654 456777888888888877 578888888887 33 3346677778888887764
Q ss_pred --CHhHHHHHHHHH-HhCCCCCC-hhhHHHHHHHH
Q 011648 320 --KFKNVYRVLKDM-NSKGVAPN-SRTCNIILNGL 350 (480)
Q Consensus 320 --~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 350 (480)
..++|..+++++ .+. .|. ...|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247788888887 554 333 33444444433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.3e-14 Score=127.47 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=76.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh----hHHHHHHHHhc
Q 011648 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK----TYSILLEGWGK 212 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 212 (480)
....+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++... .+++.. +|..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444332 22223333444444444444444444444433 111111 14444444444
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHH
Q 011648 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.|++++|...|++..+.... +...+..+...|...|++++|...+++..... +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433211 23344444444444555555555444444431 22333333333122222344444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHH
Q 011648 293 FLEMEKNGILADVAMYNALIGAFCKANK---FKNVYRVLKDM 331 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 331 (480)
++++.+... .+...+..+...+...|+ +++|...+++.
T Consensus 165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 444443311 123333334444444444 33444444443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.8e-14 Score=123.07 Aligned_cols=200 Identities=11% Similarity=-0.032 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+..|..+...+...|++++|.+.|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677777778888888888888888877777677788888888888888888888888877764 44667777777778
Q ss_pred HccCChhhHHHHHHHhhc--CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|.+.++++.. ..+.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887766 4344556677777777777777777777777766532 2455666666777777777777
Q ss_pred HHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011648 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++.+.... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777766543 345555666666666667777777766666654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=4.7e-14 Score=119.96 Aligned_cols=201 Identities=9% Similarity=-0.028 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..|..+...+...|++++|.+.|+++....+.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666666667777777777777777666666566666666666677777777777776666543 3455566666666
Q ss_pred HHcc-CChhhHHHHHHHhhc--CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011648 176 LCKS-KNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655 2222345555566666666666666666666554421 13445555555555556666
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011648 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
+|...++.+.......+...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6655555554432113444444444555555555555555555543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=2.7e-15 Score=132.14 Aligned_cols=246 Identities=9% Similarity=-0.052 Sum_probs=146.0
Q ss_pred hcCChhHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011648 109 KIRQYQIMWDLVNAMRTKRM----LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 184 (480)
..|++++|++.|+++....+ .+..++..+...+...|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777766532 245566677777777777777777777776654 4456677777777777777777
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 011648 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
|...|++.....+.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777777766555566777777777777777777777777776642 34333444444455567777777777665554
Q ss_pred CCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh
Q 011648 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 341 (480)
. +++...+ .++..+...++.++|...+.+..+..... +...+..+...|.+.|++++|...+++..+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 2 2333333 35555566666666776666665432110 13455556666666666666666666666542 211
Q ss_pred hHHHHHHHHHhCCChhHHHHHH
Q 011648 342 TCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 122233444445555554443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=7.4e-15 Score=126.72 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+...|++++|...|+++....+.+..++..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4566777777788888888888888888888777778888888888888888888888888887764 456777777888
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011648 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887775566777777777888888888888888887776532 2556667777777777777777
Q ss_pred HHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011648 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++++.... +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776653 344566666777777777777777777776654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=5.8e-13 Score=117.07 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=151.0
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCcCHHHHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYS 274 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (480)
+..++..+...+...|++++|...|++..+. -+...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455566666666666666666666666652 244555666666666 677777777777666654 455566
Q ss_pred HHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011648 275 VLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 275 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777766653 55666666667776 777777777777777654 44556666
Q ss_pred HHHHHh----CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011648 347 LNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 347 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 666666 67777777777777663 345667777777777 778888888887777764 35666677777
Q ss_pred HHh----CCChHHHHHHHHHHHHcC
Q 011648 419 LCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 419 ~~~----~g~~~~a~~~~~~~~~~~ 439 (480)
|.. .+++++|...+++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 777888888888777665
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1e-13 Score=120.35 Aligned_cols=196 Identities=10% Similarity=0.037 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011648 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 319 (480)
.+...+...|++++|.+.++++.... +.+...+..+..++...|++++|.+.++++.+... .+...+..+...|...|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHh
Confidence 33333444444444444444433322 22333444444444444444444444444443321 23444555555555555
Q ss_pred CHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011648 320 KFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..+...|...|++++|...++
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555422222 234455555556666666666666666665555556666666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 200 LFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6655432 24555666666666666666666666666653
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.1e-13 Score=116.50 Aligned_cols=225 Identities=11% Similarity=-0.022 Sum_probs=198.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011648 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667788888999999999999999999884 356778888899999 999999999999999875 788888
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 011648 310 ALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 310 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.. +...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999874 67788889999999 999999999999998832 677888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011648 382 KMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 382 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 99998 999999999999999875 56788889999999 999999999999999865 36777888888
Q ss_pred HHh----cCCHHHHHHHHHHHHhccC
Q 011648 454 LIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
+.. .+++++|.+++++..++++
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 988 8999999999999887764
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=6.9e-14 Score=127.98 Aligned_cols=232 Identities=9% Similarity=-0.008 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011648 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAF 315 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 315 (480)
.|..+...+...|++++|++.++++.... +.+...|..+..++...|+ +++|+..|+++.+.... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 34444445555555555555555555443 3344455555555555554 55555555555544322 445555555555
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHH-
Q 011648 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ-GGELEKA- 393 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 393 (480)
...|++++|...|+++++.... +...|..+..++...|++++|+..++++++..+.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5556666666666655554322 444555555555556666666666666665555555666666666555 3433444
Q ss_pred ----HHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------C
Q 011648 394 ----FKVWKYMKLKRFIPSMHTFSVLINGLCDKG--IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG--------R 459 (480)
Q Consensus 394 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~ 459 (480)
...+++++..... +...|..+...+...| ++++|++.++++ +. -..+...+..+..++.+.| +
T Consensus 256 ~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 3555555554322 4455555555555555 455666655555 21 2233444555555555542 1
Q ss_pred -HHHHHHHHHHH-Hhcc
Q 011648 460 -EDVLKFLQEKM-NLLV 474 (480)
Q Consensus 460 -~~~a~~~~~~~-~~l~ 474 (480)
.++|.++++++ .+++
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 35566666665 4443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.6e-14 Score=127.10 Aligned_cols=248 Identities=8% Similarity=-0.078 Sum_probs=147.6
Q ss_pred hcCCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHH
Q 011648 211 GKDPNLPRAREIFREMVDTGCN---PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
...|++++|+..++++.+.... .+..++..+...+...|++++|...++++.... +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3445666666666666654211 124455666666666777777777776666553 345566666667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 011648 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
+|...++++.+... .+..++..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777776665422 24566666667777777777777777776664 2333333334444455577777777776666
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 011648 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP---SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
...+++...+. ++..+...++.++|...++.+....... +...+..+...|...|++++|...++++.+.. |+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 65455544443 5555666666777777777665542110 14566777777777777888887777777543 322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011648 445 ETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122244555666666666554
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.4e-13 Score=117.01 Aligned_cols=203 Identities=8% Similarity=-0.030 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011648 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+...|++++|.+.++.+.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567777788888888888888888887754 4456777788888888888888888888877653 236677777788
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011648 314 AFCKA-NKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 888888888888877322332 4567777778888888888888888887766677788888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
+|...++++.+.....+...+..+...+...|+.++|..+++.+...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888776543136666777777777888888888888877653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.6e-14 Score=123.23 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=43.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011648 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
..+...+...|++++|...|+++....+.+..++..+...+...|++++|...+++..+... .+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhc
Confidence 33333444444444444444444433333344444444444444444444444444433321 12333333444444444
Q ss_pred CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011648 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 106 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444443322 222333333334444444444444444443
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=6.1e-14 Score=132.42 Aligned_cols=346 Identities=10% Similarity=0.012 Sum_probs=231.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV---EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+...+.+.|++++|.++|++..+.+ +...+..+...|...|+. ++|+.+|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 5667788999999999999998776 444566677777778888 8999999998864 555566666645555
Q ss_pred C-----ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011648 180 K-----NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP---RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251 (480)
Q Consensus 180 g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (480)
+ +.++|...|++..... +...+..|...|...+..+ ++.+.+......| +......+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 4 7889999999987733 3347777888877665543 4555555555554 455677778888888855
Q ss_pred HHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHhHH
Q 011648 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN---RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA----NKFKNV 324 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a 324 (480)
+++......+...-...++..+..+...|...| +.++|+..|++..+.|.. +...+..+...|... ++.++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 544444333322111223337888888998899 999999999999988743 566556677777554 699999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 011648 325 YRVLKDMNSKGVAPNSRTCNIILNG-L--IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG-----ELEKAFKV 396 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~ 396 (480)
...|++.. . -+...+..+... + ...++.++|.++|++..+. .+...+..|...|. .| ++++|.+.
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 99999988 3 245566666665 4 5689999999999998873 37788888888887 55 99999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011648 397 WKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK----EGREDVLKFLQE 468 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 468 (480)
|++.. .| +...+..+...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|..+++
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99988 43 77788888877776 3489999999999998763 3334455555553 347888988888
Q ss_pred HHHhcc
Q 011648 469 KMNLLV 474 (480)
Q Consensus 469 ~~~~l~ 474 (480)
+..+.+
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 776543
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=6.4e-12 Score=122.68 Aligned_cols=420 Identities=10% Similarity=0.082 Sum_probs=282.4
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHHHhhCch--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 011648 49 VLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ---YQIMWDLVNAM 123 (480)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 123 (480)
.+...+... +.+......++..+...+. .+..+|+.+... ++.+...|...+..-.+.++ ++.+.++|++.
T Consensus 54 ~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 455555553 4577777778877765544 688889888776 44788889888888888888 99999999998
Q ss_pred HhCCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-cCC-CC-CHHHHHHHHHHHHc---------cCC
Q 011648 124 RTKRM--LNVETFCIIMRKYARVQKV--------EEAVYTFNVMQK-YGV-TQ-NLAAFNGLLSALCK---------SKN 181 (480)
Q Consensus 124 ~~~~~--~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~g~ 181 (480)
....+ ++...|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 88774 7888888887776665543 334477776554 355 44 45678777765442 334
Q ss_pred hhhHHHHHHHhhcCCCCC--hhhHHHHHHHHhcCCC-------------hhHHHHHHHHHHH--cCCC---CC-------
Q 011648 182 VRKAQEIFDCMKDRFIPD--SKTYSILLEGWGKDPN-------------LPRAREIFREMVD--TGCN---PD------- 234 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------------~~~a~~~~~~m~~--~~~~---~~------- 234 (480)
++.+..+|++... .|.. ..+|......--..+. ++.|...+.++.. .++. |.
T Consensus 210 ~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 6778888888875 2211 2334332222111111 2223334433321 1111 10
Q ss_pred -------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHH-HHH
Q 011648 235 -------------IVTYGIMVDVLCKAG-------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV-DTF 293 (480)
Q Consensus 235 -------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 293 (480)
...|...+..--..+ ..+.+..+|++....- +-....|...+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 123444443322222 1234556777776653 556777888888888889998996 999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CCC------------hhhHHHHHHHHHh
Q 011648 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV---------APN------------SRTCNIILNGLIG 352 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~ 352 (480)
++.... ++.+...|...+....+.|+++.|..+|+.+..... .|+ ...|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 998864 345666777788888899999999999999876310 132 2357777887788
Q ss_pred CCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 011648 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 430 (480)
.|+.+.|..+|.++.+. .......|...+..-.+.+ +.+.|.++|+...+. ++-+...|..++......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999999875 3344556655554444554 589999999998876 33367777888888888899999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 431 LLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 431 ~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+..+.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998754322 3456888888888899999999999999887654
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.3e-14 Score=131.95 Aligned_cols=299 Identities=15% Similarity=0.066 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHhhc-----CC-CC
Q 011648 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD-----RF-IP 198 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~ 198 (480)
.....+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|++++|...+++... +. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666777777777777777777776653 223 24566666677777777777777766543 10 11
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------HHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PD----IVTYGIMVDVLCKAGR--------------------VDE 253 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 253 (480)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2344555566666666666666666665543100 01 1234444444444555 444
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011648 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
|...+++.... ..+.+.. ....++..+...|...|++++|...+++..
T Consensus 166 A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444433211 0011100 012344555555556666666666665554
Q ss_pred hCCC-CCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011648 333 SKGV-APN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 333 ~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
+... .++ ...+..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 12455556666666666666666666554111 11 3455666666667777777777666655
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC
Q 011648 402 LK----RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGR 459 (480)
Q Consensus 402 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 459 (480)
+. +..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 32 1000 1345566666666777777777777666532 1111 12334455555555554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.1e-14 Score=134.04 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-C
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN----VETFCIIMRKYARVQKVEEAVYTFNVMQKY----GVTQ-N 165 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 165 (480)
.....+......+...|++++|...|+++....+.+ ..++..+...+...|++++|...+++..+. +.+| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 566777888889999999999999999998877655 357888899999999999999999886543 2112 2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcCCC--CC----hhhHHHHHHHHhcCCC--------------------hhHH
Q 011648 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PD----SKTYSILLEGWGKDPN--------------------LPRA 219 (480)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~a 219 (480)
..++..+...+...|++++|...+++.....+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999988765111 12 4478888889999999 8888
Q ss_pred HHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-Cc----CHHHHHHHHHHhhccCCHHHH
Q 011648 220 REIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RP----TSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 220 ~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a 289 (480)
...+++..+. +..+ ...++..+...+...|++++|...+++...... .+ ...++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776532 1111 123455666667777777777777666543210 00 112444555555555555555
Q ss_pred HHHHHHHH
Q 011648 290 VDTFLEME 297 (480)
Q Consensus 290 ~~~~~~~~ 297 (480)
...+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=3.6e-14 Score=132.87 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCCh----hhHHHHHHHHhcCCChhHHHHHHHHHHHc----CC-CCChhhHH
Q 011648 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS----KTYSILLEGWGKDPNLPRAREIFREMVDT----GC-NPDIVTYG 239 (480)
Q Consensus 169 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~ 239 (480)
+..+...+...|++++|...|++.....+.+. .++..+...+...|++++|...+++..+. +. .....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444455566666666666666555322232 34555555566666666666666555432 10 11223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 011648 240 IMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.+...|...|++++|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555555555555555555543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.8e-14 Score=131.98 Aligned_cols=277 Identities=12% Similarity=0.044 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHhhcC------CCCCh
Q 011648 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL----AAFNGLLSALCKSKNVRKAQEIFDCMKDR------FIPDS 200 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~ 200 (480)
...+..+...+...|++++|+..|+++.+.+ +.+. .++..+..++...|++++|...+++.... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455667778899999999999999998874 3343 46788888999999999999999987652 22345
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 011648 201 KTYSILLEGWGKDPNLPRAREIFREMVDTG-----CNPDIVTYGIMVDVLCKAGR-----------------VDEALGIV 258 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 258 (480)
.++..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999876431 01123455666667777777 55555555
Q ss_pred HHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-
Q 011648 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA- 337 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~- 337 (480)
++.... ..... .......++..+...|...|++++|...+++..+....
T Consensus 207 ~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 207 QENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 544321 10000 00001223444444555555555555555544332100
Q ss_pred CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 011648 338 PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--A----DADTYTMMIKMFCQGGELEKAFKVWKYMKLK---- 403 (480)
Q Consensus 338 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 403 (480)
++ ...+..+...+...|++++|...++++....+ . ...++..+...|...|++++|...+++....
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 12455556666666666666666666554111 1 1345666667777777777777777666542
Q ss_pred CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 404 RF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 404 ~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
+. .....++..+...|...|++++|...++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 10 001335666666777777777777777777653
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=4.9e-12 Score=113.17 Aligned_cols=236 Identities=10% Similarity=0.050 Sum_probs=170.2
Q ss_pred hhhHHHHHHHHhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHH
Q 011648 200 SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------AGRV-------DEALGI 257 (480)
Q Consensus 200 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~ 257 (480)
...|...+..-.+. ++. ++|..+|++.+... +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45566666665443 233 67788888887653 2366777777776653 4775 888888
Q ss_pred HHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 011648 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA-MYNALIGAFCKANKFKNVYRVLKDMNSKGV 336 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 336 (480)
|++....-.+.+...|..++..+...|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.+.
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 888887322445667888888888888888888888888874321 333 788888888888888888888888887643
Q ss_pred CCChhhHHHHHHHHH-hCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHH
Q 011648 337 APNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP--SMHTF 412 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~ 412 (480)
. +...|........ ..|+.++|..+|+++.+..+.+...|..++..+.+.|++++|..+|+++.... .+| ....|
T Consensus 166 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp C-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2 3344443333322 36888888888888888667778888888888888888888888888888753 334 46678
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 413 SVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
..++......|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888764
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=4.5e-12 Score=113.44 Aligned_cols=219 Identities=8% Similarity=0.005 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYAR-------VQKV-------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+.|..+|++.....+.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777777666777777777766653 3664 67777777776621134555677777777777
Q ss_pred CChhhHHHHHHHhhcCCCCChh-hHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHH
Q 011648 180 KNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC-KAGRVDEALGI 257 (480)
Q Consensus 180 g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 257 (480)
|++++|..+|++..+..+.+.. +|..++..+.+.|++++|..+|++..+.+. ++...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777664333343 666666666666777777777777665432 22333332222211 24666666666
Q ss_pred HHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011648 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILA--DVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
|+...+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66665542 3345556666666666666666666666666542 232 3445666666666666666666666666554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=8.6e-14 Score=126.16 Aligned_cols=270 Identities=15% Similarity=0.045 Sum_probs=156.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-CcCHHHHHHH
Q 011648 206 LLEGWGKDPNLPRAREIFREMVDTGCNPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-RPTSFIYSVL 276 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 276 (480)
....+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++.... +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344444455555555555555443211 1 233444455555555555555555544221 10 1113344555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HhHHHHHHHHH
Q 011648 277 VHTYGVENRIEDAVDTFLEMEKNGI-LAD----VAMYNALIGAFCKANK--------------------FKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~ 331 (480)
...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5555666666666665555432100 011 2245555566666666 66666666654
Q ss_pred HhC----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 332 NSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 332 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
.+. +..+ ....+..+...+...|++++|...++++.+. ..++ ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 331 1111 1335666777777788888888888777651 1111 236777888888888888888888877
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 401 KLKRFI-PS----MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIR-PSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 401 ~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...... ++ ..++..+...+...|++++|...++++.+. +.. ....++..+...+.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 642100 11 456777888888899999999988888643 111 11345677888888999999999999988
Q ss_pred HhccCC
Q 011648 471 NLLVKE 476 (480)
Q Consensus 471 ~~l~~~ 476 (480)
.++..+
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 876543
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=3.2e-13 Score=122.33 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF-IPSMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~ 410 (480)
++..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...++++... +. .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444444455555555555544443100 11 334555556666666666666666555432 10 00133
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
++..+...|...|++++|...++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 555566666666666667666666664
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.2e-12 Score=107.43 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++.+|..+...+.+.|++++|++.|++..+.+|.+..++..+...+.+.|++++|+..+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3667777788888888888888888888877777777778888888888888888888877776654 445666666777
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011648 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+...++++.|...+.+.....+.+...+..+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777777665566677777777777777777777777777776532 2556677777777777777777
Q ss_pred HHHHHHhHhC
Q 011648 255 LGIVKSMDST 264 (480)
Q Consensus 255 ~~~~~~~~~~ 264 (480)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=8.7e-13 Score=122.16 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=156.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhC----CCCc-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 011648 241 MVDVLCKAGRVDEALGIVKSMDST----VCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--I----LADVAMYN 309 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~ 309 (480)
....+...|++++|...+++.... +..+ ...++..+..+|...|++++|...+.+..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776543 1111 23556677777777778777777777765321 0 01134667
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHh-----cC-CCCHHHHH
Q 011648 310 ALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIK-----LC-EADADTYT 378 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 378 (480)
.+...|...|++++|...+++..+.... ++ ..++..+..+|...|++++|.+.+++..+ .. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777643111 11 23677788888888888888888888876 34 44566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 011648 379 MMIKMFCQGGELEKAFKVWKYMKLK----RFIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKL 450 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 450 (480)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888899999998888877643 111112335667777788888 67777777665 32222 3356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 011648 451 RKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 451 ~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
...+...|++++|.+.+++..++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8888889999999999988877654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2.5e-12 Score=105.62 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011648 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
++.+|..+...|...|++++|++.|++..+... .+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 456677777777777777777777777766532 25666777777777777777777777777665332 4555666666
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011648 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
.+...++++.|...+.+.....+.+...+..+..+|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 6777777777777777777766667777777777777777777777777777765432 566777777777777777777
Q ss_pred HHHHHHHHHc
Q 011648 429 CVLLEDMIEK 438 (480)
Q Consensus 429 ~~~~~~~~~~ 438 (480)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777777653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-12 Score=120.54 Aligned_cols=229 Identities=7% Similarity=-0.028 Sum_probs=159.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC----C--CCcCHHHHH
Q 011648 206 LLEGWGKDPNLPRAREIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDST----V--CRPTSFIYS 274 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~ 274 (480)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++.... + .+....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777788888877777643 1111 2356677777788888888888877776542 1 011234677
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC-CCChhhHH
Q 011648 275 VLVHTYGVENRIEDAVDTFLEMEKNGIL-AD----VAMYNALIGAFCKANKFKNVYRVLKDMNSK----GV-APNSRTCN 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 344 (480)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888876542100 11 246777888888899999999988887762 22 22356788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 011648 345 IILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSVL 415 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 415 (480)
.+...+...|++++|...+++..+. .+.....+..+...|...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888899999999999999888761 22223345677888888888 77777777765 2222 23567778
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 011648 416 INGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
...|...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998874
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.1e-12 Score=124.60 Aligned_cols=212 Identities=8% Similarity=-0.037 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011648 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI-EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
++++...++...... +.+...+..+..++...|++ ++|++.|++..+... .+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 34566666777777777777 777777777665432 246677777777777777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhC---------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CCHHH
Q 011648 330 DMNSKGVAPNSRTCNIILNGLIGR---------GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG--------GELEK 392 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 392 (480)
+..+.. |+...+..+...+... |++++|...++++.+..+.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 777653 4556677777777777 7777777777777776677777777777777777 77788
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011648 393 AFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 393 A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
|...|+++.+.... -+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888777765420 266777777777777888888888887777653 234556667777777777777776544
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.2e-12 Score=124.33 Aligned_cols=214 Identities=11% Similarity=0.013 Sum_probs=154.3
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011648 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL-PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++++...++......+.+...+..+...+...|++ ++|++.|++..+... .+...|..+...|...|++++|.+.+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666655555455677777777777777887 888888877776532 2466777777888888888888888888
Q ss_pred hHhCCCCcCHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHhH
Q 011648 261 MDSTVCRPTSFIYSVLVHTYGVE---------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA--------NKFKN 323 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~ 323 (480)
..... |+...+..+..++... |++++|...+++..+... .+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 77663 5567777777777777 888888888888776532 3567777777777777 77888
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011648 324 VYRVLKDMNSKGVA--PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399 (480)
Q Consensus 324 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (480)
|...|++..+.... -+...|..+..+|...|++++|.+.|+++.+..+.+...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888877775320 25667777777788888888888888887776677777777777777777777777765443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=122.13 Aligned_cols=242 Identities=12% Similarity=0.087 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC------C
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------V 265 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 265 (480)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666666666666666666665542 11122344455555555556666665555555432 1
Q ss_pred -CCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC
Q 011648 266 -CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP 338 (480)
Q Consensus 266 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p 338 (480)
.+....++..+... |...|++++|...+++..+. +..|
T Consensus 106 ~~~~~~~~~~~l~~~-----------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 106 DHPAVAATLNNLAVL-----------------------------------YGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp TCHHHHHHHHHHHHH-----------------------------------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CChHHHHHHHHHHHH-----------------------------------HHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 11123334444444 44444554444444444332 1111
Q ss_pred -ChhhHHHHHHHHHhCCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 011648 339 -NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK------ 403 (480)
Q Consensus 339 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 403 (480)
....+..+...+...|++++|.++++++.+. .+....++..+..+|...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2234555555666666666666666665542 2222345666666777777777777777666542
Q ss_pred -CCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011648 404 -RFIPS-------MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 404 -~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
...+. ...+......+...+.+.++...++...... .....++..+..++.+.|++++|.+++++..++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 01111 1122223333444556666666676665432 23455677888888888999999999888887765
Q ss_pred C
Q 011648 476 E 476 (480)
Q Consensus 476 ~ 476 (480)
.
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 3
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=4.7e-10 Score=109.65 Aligned_cols=392 Identities=9% Similarity=0.061 Sum_probs=271.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 011648 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK---VEEAVYTFN 155 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 155 (480)
.....|+.....++ .|...|..++..+.+.+.++.+..+|+.+....|.+...|...+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45656655555544 6999999999999999999999999999999988899999999999999998 999999999
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHHccCCh--------hhHHHHHHHhhc--CC-CC-ChhhHHHHHHHHhc---------C
Q 011648 156 VMQKYG-VTQNLAAFNGLLSALCKSKNV--------RKAQEIFDCMKD--RF-IP-DSKTYSILLEGWGK---------D 213 (480)
Q Consensus 156 ~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~l~~~~~~---------~ 213 (480)
+..... .+|++..|...+....+.++. +...++|+.... +. .+ +...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998764 248999999888776665553 334578887665 33 33 45788888876543 2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------------CHHHHHHHHHHhHh--CCC----C-------
Q 011648 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-------------RVDEALGIVKSMDS--TVC----R------- 267 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-------------~~~~a~~~~~~~~~--~~~----~------- 267 (480)
++++.+..+|++.+......-..+|......-...+ +++.|...+.++.. .++ +
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 346778899999885311111234433322221111 12233444443321 011 1
Q ss_pred ----c-----C---HHHHHHHHHHhhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH-HH
Q 011648 268 ----P-----T---SFIYSVLVHTYGVEN-------RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY-RV 327 (480)
Q Consensus 268 ----~-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~ 327 (480)
| + ...|...+..--..+ ..+.+..+|++.... .+-....|...+..+.+.|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 123444444332222 123456778887765 3447788888888888899999996 99
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcC----------CC------------CHHHHHHHHHHHH
Q 011648 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC----------EA------------DADTYTMMIKMFC 385 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~------------~~~~~~~l~~~~~ 385 (480)
|++.... ++.+...|...+......|+++.|.++|+.+.... .| ...+|...++...
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999875 33355567778888889999999999999988631 13 2347888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011648 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+.|+.+.|.++|..+.+....+....|...+..-.+. ++.+.|.++|+..++. ..-+...+...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998761112334454433333344 4589999999999976 4456777788888888999999999
Q ss_pred HHHHHHHhccC
Q 011648 465 FLQEKMNLLVK 475 (480)
Q Consensus 465 ~~~~~~~~l~~ 475 (480)
.++++..+..+
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99999876544
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=4.1e-13 Score=120.35 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011648 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKY-------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
..++..+...+...|++++|..+++++.+. ..+....++..+..++...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 445555555666666666666666555442 112223344455555555555555555555443210
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC------CC-CcCHHHHHHH
Q 011648 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------VC-RPTSFIYSVL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 276 (480)
........+....++..+...+...|++++|...+++.... +. +.....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 00000001112334444555555555555555555554332 11 1223345555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011648 277 VHTYGVENRIEDAVDTFLEMEKN------GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
...+...|++++|...++++.+. +..| ...++..+...|...|++++|...++++.+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666655432 1111 233455566666667777777766666654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=1.9e-11 Score=112.92 Aligned_cols=229 Identities=10% Similarity=0.009 Sum_probs=138.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCC-----CcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHHH
Q 011648 242 VDVLCKAGRVDEALGIVKSMDSTVC-----RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GI-LA-DVAMYNA 310 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ 310 (480)
...+...|++++|...+++...... +....++..+..+|...|+++.|...+.+..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566667777666666654210 012345566666667777777777666665431 10 10 1345566
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCHHHHHHH
Q 011648 311 LIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMM 380 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l 380 (480)
+...|...|++++|...+.+..+. +..+ ...++..+..+|...|++++|.+.+++... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 666777777777777777666542 1111 123566677777777888888877777766 444446677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 011648 381 IKMFCQGGELEKAFKVWKYMKLKR----FIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKLRK 452 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 452 (480)
...|.+.|++++|...+++..+.. -+.....+..+...+...|+ ..+|+.++++. +..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 788888888888888887776531 11123344555555666666 66666666652 22222 234556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 011648 453 LLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~~l 473 (480)
.+...|++++|.+.+++..++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 788888888888888777654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=3.7e-11 Score=110.95 Aligned_cols=229 Identities=5% Similarity=-0.062 Sum_probs=159.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-C-cCHHHH
Q 011648 205 ILLEGWGKDPNLPRAREIFREMVDTGC-NPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-R-PTSFIY 273 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~ 273 (480)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++.... +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887764311 112 345667777888888888888888776542 11 1 124567
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCChhhH
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEMEKN----GIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNS-----KGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 343 (480)
..+..+|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77888888888888888888876542 111 1234677778888889999999999888876 4322 35677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 011648 344 NIILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIPS-MHTFSV 414 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 414 (480)
..+...+.+.|++++|...+++..+. .+.....+..+...|...++ +.+|...+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 88888899999999999999988872 22234456666667777777 77777777652 22222 346667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 011648 415 LINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+...|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998864
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=3.1e-11 Score=98.86 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011648 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444555566666666666666666655422 2455566666666667777777777776666555666667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011648 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
.|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776665432 255666666677777777777777777776543 23456666677777777777777777
Q ss_pred HHHHHhccCC
Q 011648 467 QEKMNLLVKE 476 (480)
Q Consensus 467 ~~~~~~l~~~ 476 (480)
+++..++.+.
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 7776665443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.1e-10 Score=107.54 Aligned_cols=264 Identities=13% Similarity=-0.008 Sum_probs=142.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhhcC--CCCC----hhhHHHHHH
Q 011648 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPD----SKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~ 208 (480)
..+...|++++|...+++........+.. +++.+...+...|++++|...+++.... ...+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555555555555554432111111 3344444555556666666665554431 0111 122444555
Q ss_pred HHhcCCChhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC----cCHHHHHHHH
Q 011648 209 GWGKDPNLPRAREIFREMVDT----GCN--P-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR----PTSFIYSVLV 277 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~ 277 (480)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566666666666666665432 111 1 1234455566667777777777777766543211 1234556666
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 011648 278 HTYGVENRIEDAVDTFLEMEKNGILA-D-VAMYN----ALIGAFCKANKFKNVYRVLKDMNSKGVAPN---SRTCNIILN 348 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 348 (480)
..+...|++++|...+++.......+ . ..... ..+..+...|+.++|...+.+.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 77777777777777777765321111 1 11111 222346677888888888777765432211 123455666
Q ss_pred HHHhCCChhHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 349 GLIGRGETDEAYRVFRRMIKL-----CEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
.+...|++++|...++..... .+++. ..+..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777778888888777776551 11111 2555566777777788887777777654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=106.92 Aligned_cols=299 Identities=13% Similarity=0.050 Sum_probs=194.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-----hhHHHHHHHHhcCCChhHHHHHHHHHHHcCCC-CCh----hhH
Q 011648 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-----KTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PDI----VTY 238 (480)
Q Consensus 169 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~ 238 (480)
.......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444566778999999999988766433332 24566777788889999999998887643211 121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhC----CCC--c-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC----CHHH
Q 011648 239 GIMVDVLCKAGRVDEALGIVKSMDST----VCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA----DVAM 307 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 307 (480)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56677788889999999988887542 211 2 23456667788888899999999988876532211 2345
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhCCChhHHHHHHHHHHhcCCC----CHHHH
Q 011648 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS-RTCN-----IILNGLIGRGETDEAYRVFRRMIKLCEA----DADTY 377 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 377 (480)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...++......+. ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 667777888889999999988887653211111 1121 2234466889999999888887762221 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011648 378 TMMIKMFCQGGELEKAFKVWKYMKLK----RFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++.....-. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 67778888889999998888877542 222222 35666677788888999999888888753100 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC
Q 011648 453 LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+...| +....+++.+.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 344444 566666666655443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1.9e-11 Score=100.10 Aligned_cols=165 Identities=13% Similarity=0.021 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|...++++....+.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666667777777777777777766666666677777777777777777777777766653 44566666666677
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
...|++++|.+.++++....+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776666545566666666666666677777777666666543 2245556666666666666666666
Q ss_pred HHHHhHh
Q 011648 257 IVKSMDS 263 (480)
Q Consensus 257 ~~~~~~~ 263 (480)
.++....
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.6e-11 Score=121.29 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011648 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+.++.+|+.+...+.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.|++..+.+ +.+..+|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34678999999999999999999999999999988889999999999999999999999999998875 56788999999
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011648 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.++...|++++|++.|++..+..+.+...|+.+..+|...|++++|++.|++.++.... +...+..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999998866778899999999999999999999999999886432 57788999999999999999
Q ss_pred HHHHHHHhHh
Q 011648 254 ALGIVKSMDS 263 (480)
Q Consensus 254 a~~~~~~~~~ 263 (480)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=4.6e-11 Score=118.09 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011648 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+++.+..++.+.|++++|++.|++..+... -+..++..+..+|.+.|++++|...|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 355666666677777777777777776665432 24566666777777777777777777776664322 4556677777
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011648 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
++...|++++|++.|+++.+..+.+...|..+..+|...|++++|++.|+++.+.... +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777777766667777777777777777777777777777765432 566777777777777777777
Q ss_pred HHHHHHHHH
Q 011648 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=1.2e-10 Score=99.11 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=157.5
Q ss_pred cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011648 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888889999999999999999999988755467778877889999999999999999999986433 567888899
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011648 348 NGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLIN 417 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 417 (480)
.++...|++++|...+++..+..+.+. ..|..+...+...|++++|.+.++++.+.+ |+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999999777777 568888899999999999999999998864 54 467777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|...| ..+++++...+ ..+...+.... ....+.+++|...+++..++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 776544 44556665543 23444454433 33456789999999999888765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=2.1e-10 Score=97.57 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=157.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011648 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.|...+......+...|++++|...|++......+++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888889999999999999999999998764377788888999999999999999999999986433 677888899
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 011648 313 GAFCKANKFKNVYRVLKDMNSKGVAPNS-------RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 383 (480)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|.+.++++.+..+. +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999886332 33 45777888889999999999999999986666 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011648 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
|...| ..+++++...+. .+...|.... ....+.+++|+..+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 86554 444555555432 2444554443 334567899999999999754
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=3.3e-11 Score=106.14 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=157.0
Q ss_pred HhcCCHHHHHHHHHHhHh-------CCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 011648 246 CKAGRVDEALGIVKSMDS-------TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN------GI-LADVAMYNAL 311 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 311 (480)
...|++++|..++++... ...+....++..+..++...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777766666543 232345677888999999999999999999998753 11 2235678888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhc--------CCCCHHH
Q 011648 312 IGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 376 (480)
...|...|++++|...+.+..+. ...| ....+..+...+...|++++|...++++.+. .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1112 3567888889999999999999999998873 3334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHH--Hc-C-C-CCC
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKLK-------RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMI--EK-G-I-RPS 443 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~-~-~p~ 443 (480)
+..+...|...|++++|...++++.+. ...+ ....|..+...+...+....+..+..... +. + . ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988753 1112 22334444444443333333222211111 11 1 1 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011648 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
..++..+..++...|++++|.+++++..+..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3467788999999999999999999987764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=5.4e-10 Score=98.94 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=113.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhC----CCCcC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 011648 244 VLCKAGRVDEALGIVKSMDST----VCRPT-SFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIG 313 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 313 (480)
.|...|++++|...+.+.... +.++. ..+|+.+..+|...|++++|+..+++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777666666655432 21111 346666777777777777777777665432 1100 1345667777
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCH-------HHHHHH
Q 011648 314 AFCKA-NKFKNVYRVLKDMNSKGVAP-N----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMM 380 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 380 (480)
.|... |++++|...|++..+..... + ..++..+...+...|++++|+..|+++.+..+.+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 88888888888776531110 1 24566777777888888888888888776322221 146667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hCCChHHHHHHHHHH
Q 011648 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TFSVLINGLC--DKGIVSDSCVLLEDM 435 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~ 435 (480)
..++...|++++|...+++..+.. |+.. .+..++.++. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777777888888888888777643 3211 2333444553 345566666666554
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=4.7e-11 Score=105.13 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=161.2
Q ss_pred hcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC------CC-CcCHHHHHHH
Q 011648 211 GKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------VC-RPTSFIYSVL 276 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 276 (480)
...|++++|...+++..+. ..+....++..+...+...|++++|...+++.... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877642 11224667888999999999999999999998754 22 3346678899
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-Chhh
Q 011648 277 VHTYGVENRIEDAVDTFLEMEKN------G-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRT 342 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~ 342 (480)
..++...|++++|...+.+..+. . .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998754 1 1224567888889999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCC
Q 011648 343 CNIILNGLIGRGETDEAYRVFRRMIKL---------CEADADTYTMMIKMFCQGGELEKA------FKVWKYMKLKRFIP 407 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~p 407 (480)
+..+...+...|++++|...++++.+. .+.....|..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998762 222333444444444443333322 222222211 1112
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
...++..+...|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788899999999999999999999875
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=5.6e-09 Score=90.70 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CcCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011648 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444555555555544433321 12333344444444445555555555544443
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.5e-10 Score=85.12 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.|..+...+...|++++|..+++++....+.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 455556666666666666666666665555556666666666666666666666666665543 3445555566666666
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHH
Q 011648 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 228 (480)
.|++++|.+.++++....+.+..++..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666554444555555666666666666666666665554
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=6.2e-09 Score=90.43 Aligned_cols=247 Identities=7% Similarity=0.042 Sum_probs=150.1
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011648 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
+-..-.|++..++.-...+... . ....-..+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~-~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV-T-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC-C-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHHhhHHHHHHHHHHhcCcc-c-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 3445578888777744333221 1 122333345677777776542 112233333343333 33322
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011648 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
++..+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45555556777888888888888888888766553 2256667777788888888888888888887
Q ss_pred hCCCCC-----ChhhHHHHHHHHH--h--CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 333 SKGVAP-----NSRTCNIILNGLI--G--RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 333 ~~~~~p-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+. .| +..+...+..+++ . .++..+|..+|+++.... |+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74 34 2455555555532 2 337888888888876533 44333334444778888888888888866542
Q ss_pred C---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 011648 404 R---------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 404 ~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
. -+-+..+...+|......|+ +|.++++++.+. .|+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 1 02255666556555555675 778888888764 3444
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1.8e-09 Score=82.95 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011648 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+...|++++|..+++.+.+..+.+...+..+...+...|++++|...++++...+. .+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence 334444455555555555555555544444455555555555555555555555555554331 2344555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 011648 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 423 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|++++|...++++.... +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 55555555555555432 2234455555555555666666666655555444
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.3e-09 Score=94.84 Aligned_cols=187 Identities=12% Similarity=0.030 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C-CCHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-T-QNLAAF 169 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 169 (480)
.++..+......+.+.|++++|+..|+.+....+.+ ...+..+...+.+.|++++|+..|+...+... . ....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 467777778888888899999999999888877645 77888888888888999999998888887531 1 224556
Q ss_pred HHHHHHHHc--------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 011648 170 NGLLSALCK--------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241 (480)
Q Consensus 170 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 241 (480)
..+..++.. .|++++|...|+++....+.+......+.. +...... -...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 667777777 888888888888887754444444322211 0000000 00113444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCc--CHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHC
Q 011648 242 VDVLCKAGRVDEALGIVKSMDSTVCRP--TSFIYSVLVHTYGVE----------NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 299 (480)
...|.+.|++++|...++.+....... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 556666666666666666665542111 233455555555544 6666666666666654
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.3e-09 Score=91.02 Aligned_cols=113 Identities=7% Similarity=0.057 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI----------------IMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..+......+.+.|++++|+..|++.....|.+...|.. +...+.+.|++++|+..|++..+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445556667777777777777777665544444444 444555555555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011648 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
. |.+...+..+..++...|++++|...|++..+..|.+..++..+...|
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3 334444444555555555555555555554443344444444444444
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=7.3e-10 Score=110.05 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=131.1
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 108 AKIRQYQIMWDLVNAMR--------TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...|++++|++.+++.. ...+.+...+..+...+...|++++|++.|++..+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67788888888888887 5556677788888888888888888888888887765 55677788888888888
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011648 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|++++|...|++..+..+.+...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|.+.++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877656677888888888888888888 8888888775432 56677788888888888888888888
Q ss_pred HhHhCCCCcCHHHHHHHHHHhhccCC
Q 011648 260 SMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
+..+.. +.+...+..+..++...++
T Consensus 559 ~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTS-TTHHHHHHHHHHHTC----
T ss_pred hhcccC-cccHHHHHHHHHHHHccCC
Confidence 877653 3345566666677665554
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=2e-07 Score=88.48 Aligned_cols=357 Identities=10% Similarity=0.039 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHHhh-CchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC-C--CCCHHHH
Q 011648 60 RVSPEIVEDVLEKFRN-AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ-YQIMWDLVNAMRTK-R--MLNVETF 134 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~-~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~--~~~~~~~ 134 (480)
.-....+...+..++. ....+..+|+.+.... |++..|...+....+.+. .+....+|+..... | +.+...|
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3345666777777763 3348999998887642 699999999998887764 45677788876653 3 3677888
Q ss_pred HHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------------cCChhhHHHHHHHhhcCCC
Q 011648 135 CIIMRKYA----RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK-------------SKNVRKAQEIFDCMKDRFI 197 (480)
Q Consensus 135 ~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~~~ 197 (480)
...+..+. .+|+.+.+..+|++.+......-...|......-.. .+.+..|..+++.+....+
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 88887654 456788999999999874211112233322221111 1123334444444433111
Q ss_pred -CChhhHHHHHHHHhcCC-C------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC
Q 011648 198 -PDSKTYSILLEGWGKDP-N------LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269 (480)
Q Consensus 198 -~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (480)
.+...|...+..-...+ . .+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 13345655555433221 1 234667888877653 335677777777788888888888888888876 333
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011648 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---------ILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
...+.. |+...+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|.+. .. ..
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC
Confidence 333322 2111111111 22221110 000 1234555555555667788888888887 32 11
Q ss_pred CChhhHHHHHHHHHh-CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011648 338 PNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 338 p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.+...|......-.. .++.+.|..+|+...+..+.++..+...++.....|+.+.|..+|+.+. .....|...+
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 233333322222222 2368888888888877555566666667777777888888888888762 2466777777
Q ss_pred HHHHhCCChHHHHHHHHHHH
Q 011648 417 NGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~ 436 (480)
..-...|+.+.+..+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 76666788888888777776
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=4e-09 Score=91.68 Aligned_cols=186 Identities=9% Similarity=-0.041 Sum_probs=117.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC--CCHHHH
Q 011648 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL--ADVAMY 308 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 308 (480)
+...+..+...+.+.|++++|...|+.+.... +.+ ...+..+..++...|++++|...|++..+.... .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556666677777888888888888877653 223 556667777777888888888888877764221 123455
Q ss_pred HHHHHHHHH--------cCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHH
Q 011648 309 NALIGAFCK--------ANKFKNVYRVLKDMNSKGVAPNS-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 309 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
..+..++.. .|++++|...|+++.+.. |+. .....+. .+..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~---~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRA---KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHH---HHHHHHHH
Confidence 566666766 777777777777776642 222 1111110 0000000 00112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHcC
Q 011648 380 MIKMFCQGGELEKAFKVWKYMKLKRFIP--SMHTFSVLINGLCDK----------GIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 439 (480)
+...|...|++++|...|+++.+..... ....+..+..+|... |++++|...++++++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7788888899999999998888754221 245667777777755 88889999999888753
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=3.6e-09 Score=88.40 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 011648 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 309 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (480)
..+...|.+.|++++|...|++..+..+. +...+..+..++...|++++|...|+++.+..|.+..+|..+..+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 34777888899999999999998886433 56788888889999999999999999999888888899998888887655
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011648 389 E--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 389 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 450 (480)
+ ...+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 4 3445555555432 222333444456667778899999999999986 45776544433
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=4e-09 Score=93.29 Aligned_cols=166 Identities=11% Similarity=0.007 Sum_probs=75.6
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhcCC----CC--ChhhHHHHHHHHhcC-CChhHHHHHHHHHHHcCCCC-C----h
Q 011648 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRF----IP--DSKTYSILLEGWGKD-PNLPRAREIFREMVDTGCNP-D----I 235 (480)
Q Consensus 168 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~ 235 (480)
+|+.+..+|...|++++|...+++..... .+ -..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444555555555544444443200 00 023455555555553 55665555555554321000 0 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCH------HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC----CH
Q 011648 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS------FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA----DV 305 (480)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 305 (480)
.++..+...+...|++++|+..+++.......... ..+..+..++...|++++|...|++..+..... ..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34555555666666666666666665543211111 134445555566666666666666654421100 01
Q ss_pred HHHHHHHHHHH--HcCCHhHHHHHHHHHHh
Q 011648 306 AMYNALIGAFC--KANKFKNVYRVLKDMNS 333 (480)
Q Consensus 306 ~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 333 (480)
..+..++.++. ..+++++|...|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12333344443 23445666666555443
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=1.2e-07 Score=83.28 Aligned_cols=131 Identities=8% Similarity=-0.078 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCHHHHHHHHHHH----HHc---CCHHH
Q 011648 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR--QYQIMWDLVNAMRTKRMLNVETFCIIMRKY----ARV---QKVEE 149 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~ 149 (480)
.|++.++.+...++ -+..+|+..-..+...| ++++++++++.+...+|.+..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555444433 34445555555555555 555555555555555544444444433333 223 34444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh--hHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 011648 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR--KAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
++++++.+.+.. +.+..+|+.-.-++.+.|.++ ++.+.++++.+..+.|...|+.-...+.+
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 444444444433 334444444444444444444 44444444444333344444433333333
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.2e-07 Score=83.31 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=182.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hcc---C
Q 011648 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--KVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL----CKS---K 180 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g 180 (480)
....++|+.+++.+...+|-+..+|+.--..+...| +++++++.++.+...+ |-+..+|+.--.++ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 344568999999999999988999999988888888 9999999999999876 55667777655555 455 7
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChh--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------HH
Q 011648 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------VD 252 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------~~ 252 (480)
++++++.+++.+.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.|. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 8999999999999987889999998888888888888 999999999987654 77788877777777776 89
Q ss_pred HHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011648 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED-AVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
++++.++.+.... +-|...|+.+...+.+.|+... +.....++.+.+ -..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999988875 6688888888888888887444 555666665432 13478889999999999999999999999
Q ss_pred HHHhC
Q 011648 330 DMNSK 334 (480)
Q Consensus 330 ~~~~~ 334 (480)
.+.+.
T Consensus 283 ~l~~~ 287 (306)
T 3dra_A 283 LLKSK 287 (306)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99863
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=2.8e-09 Score=105.85 Aligned_cols=173 Identities=6% Similarity=-0.069 Sum_probs=138.1
Q ss_pred HhcCCHHHHHHHHHHhH--------hCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011648 246 CKAGRVDEALGIVKSMD--------STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...|++++|++.+++.. ... +.+...+..+..++...|++++|...|+++.+... .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67889999999998887 332 45567788888889999999999999998887532 367788888888999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011648 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (480)
.|++++|...|++..+.... +...+..+..++.+.|++++ ++.|+++.+..+.+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998876433 56678888888999999999 99999998878888889999999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhCCC
Q 011648 398 KYMKLKRFIPS-MHTFSVLINGLCDKGI 424 (480)
Q Consensus 398 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (480)
+++.+.+ |+ ...+..+..++...|+
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9888765 44 5677777777766554
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=5.4e-07 Score=85.45 Aligned_cols=343 Identities=8% Similarity=-0.012 Sum_probs=220.2
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHc----cCChh
Q 011648 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKY-GV-TQNLAAFNGLLSALCK----SKNVR 183 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~----~g~~~ 183 (480)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +.+...|...+..+.. .++.+
T Consensus 28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 8899999999999874 3699999999988887774 46677888877653 43 3477888888876542 46788
Q ss_pred hHHHHHHHhhcCCCCC--hhhHHHHHHHHhc-------------CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011648 184 KAQEIFDCMKDRFIPD--SKTYSILLEGWGK-------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
.+..+|++... .|+. ...|......-.. .+.+..|..+++++...-...+...|...+..-...
T Consensus 107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 89999999987 2222 1222222221100 112333444444443210001333555555443222
Q ss_pred --CC-----HHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011648 249 --GR-----VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 249 --g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
|- .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 345677888887753 556778888888889999999999999999887 33433332 23332222
Q ss_pred hHHHHHHHHHHhC---------CCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q 011648 322 KNVYRVLKDMNSK---------GVAP---NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG- 388 (480)
Q Consensus 322 ~~a~~~~~~~~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 388 (480)
++. ++.+.+. +..+ ....|...+..+.+.++.+.|..+|+++ ...+.+...|...+..-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence 222 2222211 0001 1245666667666788899999999999 422245566654443333334
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011648 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
+.+.|..+|+...+.. +-+...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999988753 2245667777887788899999999999972 257788888887788899999999887
Q ss_pred HHHh
Q 011648 469 KMNL 472 (480)
Q Consensus 469 ~~~~ 472 (480)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=1.4e-09 Score=85.54 Aligned_cols=142 Identities=12% Similarity=0.041 Sum_probs=88.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011648 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (480)
.+...|++++|...+......... +...+..+...|.+.|++++|++.|+++.+..|.+..+|..+..+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 344456666666666666543111 2344555666777777777777777777776666777777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011648 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL-LEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
...|++..+.++. +...|..+...|.+.|+.++|.+. ++++++.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777777765432 566677777777777777665544 46666543 224455555555555555
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.2e-09 Score=88.67 Aligned_cols=160 Identities=8% Similarity=-0.022 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHc
Q 011648 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCK 178 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ 178 (480)
+......+.+.|++++|...|++.....|.+...+..+...+...|++++|+..++...+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455566677777777777777666666666777777777777777777777777666543 244333222111 111
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 011648 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.+....|...+++.....|.+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1222334555555555444455666666666666666666666666665543222 233555555666666666666665
Q ss_pred HHHh
Q 011648 258 VKSM 261 (480)
Q Consensus 258 ~~~~ 261 (480)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=6.4e-09 Score=91.68 Aligned_cols=166 Identities=11% Similarity=-0.031 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll 173 (480)
.+...+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|...++.+.... |+...... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4566677777778888888888888888888777778888888888888888888888888776653 34433222 22
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHH
Q 011648 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~ 252 (480)
..+...++.+.|...+++.....+.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 235566677777777777777666677778888888888888888888888877654221 2456777777777777777
Q ss_pred HHHHHHHHhH
Q 011648 253 EALGIVKSMD 262 (480)
Q Consensus 253 ~a~~~~~~~~ 262 (480)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777666543
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.7e-08 Score=85.40 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 169 (480)
++..+..+...+.+.|++++|+..|+++....+. ....+..+..++.+.|++++|+..|+++.+.. |.+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 5566667777888899999999999998876652 24678888889999999999999999888764 2222 233
Q ss_pred HHHHHHHHc------------------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC
Q 011648 170 NGLLSALCK------------------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 170 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 231 (480)
..+..++.. .|+.++|...|+++.+..|.+...+....... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH----
Confidence 334444433 45677777777777665544444433221100 0000000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011648 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
.....+...|.+.|++++|...++.+.+.. +.+ ...+..+..++.+.|++++|.+.++.+...+.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011345677888999999999999988763 212 24677888999999999999999998887643
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=3.1e-08 Score=83.79 Aligned_cols=190 Identities=6% Similarity=-0.013 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh--hhHHH
Q 011648 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA--DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--RTCNI 345 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ 345 (480)
...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566777888888888888888887653221 1356777778888888888888888888875332111 13333
Q ss_pred HHHHHHh------------------CCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011648 346 ILNGLIG------------------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 346 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 407 (480)
+..++.. .|+.++|...|+++.+..|.+...+........ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 3334433 345566666666655544444333322111000 00000
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 011648 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|++++|.+.++.+....+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113455667788889999999988886532111 2457778888888899999988888877665543
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=7e-10 Score=87.28 Aligned_cols=110 Identities=10% Similarity=-0.088 Sum_probs=50.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 011648 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 188 (480)
..|++++|+..++......+.+...+..+...|.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 33444444444444433332223333444444455555555555554444433 33444444444445555555555555
Q ss_pred HHHhhcCCCCChhhHHHHHHHHhcCCChhHH
Q 011648 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
|++..+..+.+..+|..+...+.+.|++++|
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 5444443333444444444444444444443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=4e-09 Score=85.50 Aligned_cols=158 Identities=8% Similarity=0.025 Sum_probs=87.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCC
Q 011648 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRG 354 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~ 354 (480)
....+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3444455555555555555544321 1234455555555555666666665555554432 122221111111 11112
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHH
Q 011648 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (480)
+...|...+++..+..|.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 23345666666666666667777777777777777777777777777655322 24566667777777777777777776
Q ss_pred HHH
Q 011648 434 DMI 436 (480)
Q Consensus 434 ~~~ 436 (480)
+.+
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=7.2e-09 Score=101.08 Aligned_cols=150 Identities=12% Similarity=-0.012 Sum_probs=106.2
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011648 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..|.+.|+.+.+..+ .+...|..+...+.+.|++++|.+.|++..+..+.+..++..+...+...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 367777777655433 467778888888888888888888888888777777788888888888888888888888887
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcC---CChhHHHHHHHHHHHcC
Q 011648 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD---PNLPRAREIFREMVDTG 230 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~ 230 (480)
.+.. +.+...+..+..++...|++++|.+.+++..+..+.+...+..+...+... |++++|.+.+++..+.+
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7764 456777777888888888888888888887775566677777788888777 88888888888877654
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=5.2e-08 Score=81.51 Aligned_cols=176 Identities=13% Similarity=0.060 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccC----CHHHHHHHH
Q 011648 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN----RIEDAVDTF 293 (480)
Q Consensus 218 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 293 (480)
+|.+.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555555556666666666666666665543 34445555555555 4 566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----CCChhHHHHHHH
Q 011648 294 LEMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIG----RGETDEAYRVFR 364 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 364 (480)
++..+.| +...+..+...|.. .+++++|...|++..+.|.. .....+..|...|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6655543 34444444444444 44555555555555544321 013344444444444 444444444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 011648 365 RMIKLCEADADTYTMMIKMFCQG-G-----ELEKAFKVWKYMKLKR 404 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 404 (480)
+..+. +.+...+..|..+|... | ++++|...|+...+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44432 22333344444444322 1 4444444444444433
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.7e-08 Score=88.93 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011648 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+.+...+..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|...++++....+..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3455667777778888888888888888887765 556777888888888888888888888877664332222223333
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-cCHHHHHHHHHHhhccCCH
Q 011648 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 286 (480)
..+...++.++|...+++..+... .+...+..+...+...|++++|...+.++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 335566777777777777776542 25667777777788888888888888877765311 1255677777777777777
Q ss_pred HHHHHHHHHHH
Q 011648 287 EDAVDTFLEME 297 (480)
Q Consensus 287 ~~a~~~~~~~~ 297 (480)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777666543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=1.5e-08 Score=98.78 Aligned_cols=155 Identities=7% Similarity=-0.066 Sum_probs=121.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 011648 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
.|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988753 236788999999999999999999999999987433 577888999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHcC
Q 011648 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 439 (480)
+++..+..+.+...+..+..+|...|++++|.+.+++..+.... +...+..+...+... |+.++|.+.++++++.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999988888999999999999999999999999999887533 678889999999999 99999999999999765
Q ss_pred C
Q 011648 440 I 440 (480)
Q Consensus 440 ~ 440 (480)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=1.9e-07 Score=78.13 Aligned_cols=174 Identities=10% Similarity=-0.015 Sum_probs=91.4
Q ss_pred HHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHH
Q 011648 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN----KFKNVYRVLK 329 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 329 (480)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555443 44555555556666666666666666665543 44455555555554 4 5666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 011648 330 DMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQ----GGELEKAFKVWKY 399 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 399 (480)
+..+.| +...+..+...|.. .+++++|.++|++..+..+. ++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655542 33445555555544 55566666666655542221 14555555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHcC
Q 011648 400 MKLKRFIPSMHTFSVLINGLCDK-G-----IVSDSCVLLEDMIEKG 439 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 439 (480)
..+.+ .+...+..+...|... | +.++|...|++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55541 1333444444444432 1 5555555555555443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.5e-08 Score=90.39 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHhHhC----CCC-cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 011648 243 DVLCKAGRVDEALGIVKSMDST----VCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALI 312 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li 312 (480)
..|...|++++|...+.+.... +.. .-..+|..+..+|...|++++|+..|++..+. |-.. ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666777766666655332 100 01234555555666666666666666654331 1000 022344444
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhc---CCC--C-HHHHHHHH
Q 011648 313 GAFCKANKFKNVYRVLKDMNSKGVAP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIKL---CEA--D-ADTYTMMI 381 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~--~-~~~~~~l~ 381 (480)
..|.. |++++|...+++..+..... ...++..+...+...|++++|+..|+++... ... . ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 44444 55555555555544321000 0223444444555555555555555554441 100 0 11333344
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011648 382 KMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~ 401 (480)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555544
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=4e-07 Score=80.46 Aligned_cols=203 Identities=9% Similarity=0.074 Sum_probs=102.6
Q ss_pred HHhhCCCCCCHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH-
Q 011648 53 ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV- 131 (480)
Q Consensus 53 ~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 131 (480)
.++.....|+.+++..+...+.-....-......-. +.....+...+..+...|++++|.+.++......+...
T Consensus 36 ~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~ 110 (293)
T 2qfc_A 36 RIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSD-----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp HHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCcCHHHHhccccccc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh
Confidence 344434456666666555555433321111111110 01334455566677778888888888877666544222
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHccCChhhHHHHHHHhhc---CCCC
Q 011648 132 -----ETFCIIMRKYARVQKVEEAVYTFNVMQKYGV---TQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIP 198 (480)
Q Consensus 132 -----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~ 198 (480)
..+..+...+...|++++|+..+++..+... .+. ..+++.+...|...|++++|...|++... ..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc
Confidence 1233344455566677777777666654211 111 33556666666666666666666666542 1111
Q ss_pred C----hhhHHHHHHHHhcCCChhHHHHHHHHHHHcC----CCC-ChhhHHHHHHHHHhcCCHHHH-HHHHHH
Q 011648 199 D----SKTYSILLEGWGKDPNLPRAREIFREMVDTG----CNP-DIVTYGIMVDVLCKAGRVDEA-LGIVKS 260 (480)
Q Consensus 199 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 260 (480)
+ ..++..+...|...|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...+++
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 1355555566666666666666665554221 000 133445555555555555555 444443
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.3e-08 Score=88.06 Aligned_cols=222 Identities=10% Similarity=0.074 Sum_probs=158.0
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHH
Q 011648 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
.|++++|.+++++..+... . .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677788888887765321 1 1222 57778877777654 456778899999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC---CCCC--hhhHHHHHHHHHhCCChhHHHH
Q 011648 292 TFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG---VAPN--SRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 292 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
.|.+..+. +-.. -..+|+.+...|.+.|++++|...+++..+.. -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887542 1111 14478888889999999999999999876531 1111 3567778888888 99999999
Q ss_pred HHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChHHHHH
Q 011648 362 VFRRMIKLCEA------DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 362 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 430 (480)
.+++.....+. ...++..+...|.+.|++++|...|++.... +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998872211 1467888999999999999999999998763 21111 2356667777888899999999
Q ss_pred HHHHHHHcCCCCC---HH---HHHHHHHHHHhcCCHHHHHH
Q 011648 431 LLEDMIEKGIRPS---GE---TFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 431 ~~~~~~~~~~~p~---~~---~~~~l~~~~~~~g~~~~a~~ 465 (480)
.|++.+ . .|+ .. .+..++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998 4 343 22 344455555 5678777666
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=1.7e-06 Score=76.81 Aligned_cols=167 Identities=7% Similarity=-0.011 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHH
Q 011648 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV-Q-KVEEAVYTFN 155 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~ 155 (480)
.|+++++.+...++ -+..+|+..-..+...| .+++++++++.+...++.+..+|+.-...+... + ++++++++++
T Consensus 72 ~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 57777777665544 46667777666666666 477777777777777777777777666666665 5 6677777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChh--------hHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC-------hhHHH
Q 011648 156 VMQKYGVTQNLAAFNGLLSALCKSKNVR--------KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-------LPRAR 220 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~ 220 (480)
.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+.|...|+.....+.+.+. +++++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 776654 446666665544444444444 55556665555445555666655555555544 34555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011648 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 221 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
+.+++.+...+. |...|+-+-..+.+.|
T Consensus 229 e~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 229 IYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 555555543222 4444444433333333
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=7.1e-08 Score=73.02 Aligned_cols=111 Identities=8% Similarity=0.023 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+......+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34555566667777777777777777776666666777777777777777777777777766654 44566666666677
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
...|++++|.+.|++..+..|.+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777666644545555544433
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=2.4e-07 Score=81.90 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=115.2
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhhCchHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011648 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA---YHSMIESLAKIRQYQIMWDLVNAMRTK 126 (480)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~ 126 (480)
....++.....|+.+++..+...+.-... .+|..- . ..+... +...+..+...|++++|..++++....
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---~~~~~~----~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---HFYEVL----I-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---HHHHTT----T-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---HHhCCC----C-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34445554556888888877777764432 222211 1 122222 333466677888888888888887765
Q ss_pred CCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChhhHHHHHHHhhc-
Q 011648 127 RMLNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVT-QN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD- 194 (480)
Q Consensus 127 ~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 194 (480)
...+.. .+..+...+...|++++|+..|++..+.... ++ ..+++.+..+|...|++++|...|++..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 442222 2233555555666778888887777663211 12 23567777777777777777777777653
Q ss_pred --C---CCC-ChhhHHHHHHHHhcCCChhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHh
Q 011648 195 --R---FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNPD-IVTYGIMVDVLCKAGR-VDEALGIVKSM 261 (480)
Q Consensus 195 --~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 261 (480)
. ..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++.+.|+ +++|.+.+++.
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 111 1234556666666666666666666655432 11111 3455555566666663 46666555544
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=2.4e-07 Score=77.50 Aligned_cols=125 Identities=7% Similarity=-0.044 Sum_probs=61.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...+++..+... .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 334444555555555555555442 23445555555555555555555555555544321 1334444555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 354 GETDEAYRVFRRMIKLCEADA----------------DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
|++++|...++++.+..+.+. ..+..+..+|...|++++|...++++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555554333222 44445555555555555555555555443
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=3.3e-06 Score=74.93 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=172.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-Chhh
Q 011648 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-K-NVRK 184 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~ 184 (480)
.+.+..++|+++++.+...++-+..+|+.--..+...| .+++++++++.+...+ +-+..+|+.-..++... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 33445568999999999999988999999888888888 5999999999999876 66788888877777666 6 8899
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhcCCChh--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------
Q 011648 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--------RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------ 250 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------ 250 (480)
++++++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 999999999988888899887766666666666 899999999987644 78888888877777776
Q ss_pred -HHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 011648 251 -VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI--------------------EDAVDTFLEMEKNG-----ILAD 304 (480)
Q Consensus 251 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 304 (480)
++++++.+++..... +-|...|+.+-..+.+.|.. ....+...++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 688999998888765 66777787766666655543 33344444443322 1357
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
...+..++..|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999999999998754
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=9.4e-07 Score=78.03 Aligned_cols=162 Identities=9% Similarity=-0.044 Sum_probs=70.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC---CC--hhhH
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADV-----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVA---PN--SRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~--~~~~ 343 (480)
...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33444555555555555555554443211100 11222333344445555555555555432111 11 2244
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHH
Q 011648 344 NIILNGLIGRGETDEAYRVFRRMIK---LCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-----SMHT 411 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~ 411 (480)
+.+...|...|++++|...++++.+ ..+.+ ..++..+..+|...|++++|...+++..+..... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455555555555555555555442 11111 1344455555555555555555555544321000 0334
Q ss_pred HHHHHHHHHhCCChHHH-HHHHHHH
Q 011648 412 FSVLINGLCDKGIVSDS-CVLLEDM 435 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~a-~~~~~~~ 435 (480)
|..+...|...|++++| ...++++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44455555555555555 4444443
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=1.9e-06 Score=76.03 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=112.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCC----HHHHHH
Q 011648 311 LIGAFCKANKFKNVYRVLKDMNSKGV-APNS----RTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTM 379 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~ 379 (480)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++... ..++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776422 1221 12334556666777888888888888762 1222 336788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 011648 380 MIKMFCQGGELEKAFKVWKYMKL----K-RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS-GETFG 448 (480)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 448 (480)
+..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|+..++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888888773 1 11111 246778888888889999999888887742 22222 56777
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 011648 449 KLRKLLIKEGR-EDVLKFLQEKMNLL 473 (480)
Q Consensus 449 ~l~~~~~~~g~-~~~a~~~~~~~~~l 473 (480)
.+..++.+.|+ +++|.+.+++...+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888888884 68888888877654
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=5.3e-08 Score=85.40 Aligned_cols=95 Identities=8% Similarity=-0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 011648 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
..+..+...+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444444444555555555554444432 2344444455555555555555555555554444444455555555555
Q ss_pred cCCChhHHHHHHHHHH
Q 011648 212 KDPNLPRAREIFREMV 227 (480)
Q Consensus 212 ~~~~~~~a~~~~~~m~ 227 (480)
..|++++|...|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555544
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=2.8e-07 Score=73.48 Aligned_cols=129 Identities=9% Similarity=-0.050 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+..+...+...|++++|...+++.....+.+..++..+..++...|++++|...+++..+... .+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 4555566666777777777777777666566677777777777777777777777777766542 256667777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 422 KGIVSDSCVLLEDMIEKGIRPSGETFG--KLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.|++++|...++++.+... .+...+. .....+.+.|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777776432 2333442 233335666777777777766644
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=1.1e-07 Score=75.78 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+...+...|++++|...|++.....+.+..++..+...+...|++++|+..+++..+.. +.+..++..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444455555555556666665555555544455555555555555555555555555555443 3344445555555555
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHH--HHhcCCChhHHHHHHHH
Q 011648 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLE--GWGKDPNLPRAREIFRE 225 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 225 (480)
.|++++|...|++.....+.+...+..+.. .+...|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555555554433333333322222 23334444444444443
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=3.2e-07 Score=76.70 Aligned_cols=128 Identities=10% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+...+...|++++|.+.|++.. .++..++..+...+...|++++|+..|+...+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34455666777788888888887663 2467777778888888888888888887777664 5566777777778888
Q ss_pred cCChhhHHHHHHHhhcCCCCCh----------------hhHHHHHHHHhcCCChhHHHHHHHHHHHcC
Q 011648 179 SKNVRKAQEIFDCMKDRFIPDS----------------KTYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 230 (480)
.|++++|...|++.....+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888877766444333 667777777777777777777777777643
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=3.1e-07 Score=71.68 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011648 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+.+.|++++|...|+++....|.+...|..+..+|...|++++|...|+++.+..+. +...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 4467777788888999999999999998888888999999999999999999999999998887643 677888888999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 420 CDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
...|++++|...|+++++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999998753 5554
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.8e-07 Score=69.65 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+......+.+.|++++|++.|+++.+..|.+..+|..+..+|.+.|++++|...+++.++.+.. +...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 345556666777777777777777777766677777777777777777777777777777765432 5667777777777
Q ss_pred hCCChHHHHHHHHHHHHc
Q 011648 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~ 438 (480)
..|++++|++.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777764
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.9e-07 Score=70.22 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|.+.++++....+.+..++..+...+...|++++|..+++++.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45555566666666666666666666665555555566666666666666666666666655543 33455555555556
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
...|++++|...++++....+.+...+..+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66666666666665555433334444444333
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-07 Score=71.92 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4566666677777777777777777777766666666666677777777777777777776666653 345566666666
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 011648 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
++...|++++|...|++.....+.+...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6666666666666666665543334444544444443
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=4.5e-08 Score=76.52 Aligned_cols=105 Identities=11% Similarity=-0.014 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011648 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 449 (480)
.|.+...+..+...+.+.|++++|...|+++...++. +...|..+..+|...|++++|+..|+++++... .++..+..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHH
Confidence 3445678888999999999999999999999987643 788999999999999999999999999998653 35778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 450 LRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+..++.+.|++++|.+.+++..++.+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988764
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=1.9e-07 Score=70.94 Aligned_cols=118 Identities=12% Similarity=0.000 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|+..++...+.. +.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344555555555666666666666666655555555555556666666666666666665555543 3344555555555
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCC
Q 011648 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (480)
+...|++++|...|++.....+.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 555555555555555555433334444444444444433
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=9.1e-08 Score=83.93 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...+..+...+.+.|++++|+..|++.....+.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4677888888889999999999999999988888888899999999999999999999999988765 557788888888
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011648 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=8.2e-07 Score=66.63 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011648 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|.+.++++.+..+.+..++..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555666666667777777777666665555666666777777777777777777777665432 2556666677777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011648 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
...|++++|...++++.+.. +.+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77777777777777776543 223444444444443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.2e-07 Score=76.86 Aligned_cols=121 Identities=10% Similarity=0.124 Sum_probs=82.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--hh
Q 011648 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCKSKNV--RK 184 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~ 184 (480)
...|++++|...++......+.+...+..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345667777777777777666677777777777777777777777777776654 4456666666666 6667776 77
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 011648 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 229 (480)
|...+++.....+.+...+..+...+...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777776655556677777777777777777777777777765
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=1.3e-07 Score=78.43 Aligned_cols=156 Identities=11% Similarity=-0.035 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCC
Q 011648 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGE 355 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~ 355 (480)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567788888755544432 2234566777777777788888888877776551 1111 23456666677777777
Q ss_pred hhHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCC
Q 011648 356 TDEAYRVFRRMIKL---CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKG 423 (480)
Q Consensus 356 ~~~a~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 423 (480)
+++|...+++.... .+.+ ...+..+...+...|++++|...+++.... +..+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776651 2212 234666677777777777777777766532 1110 0123456666677777
Q ss_pred ChHHHHHHHHHHHH
Q 011648 424 IVSDSCVLLEDMIE 437 (480)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (480)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766543
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=8e-08 Score=75.12 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011648 326 RVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 326 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
..++++.+. .| +...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|+++...+
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 23 445677788889999999999999999998888899999999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.. +...+..+..+|...|++++|...|+++++.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 6788888999999999999999999999864
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=8.4e-06 Score=71.98 Aligned_cols=184 Identities=6% Similarity=-0.093 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hhHHHHHH
Q 011648 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TDEAYRVF 363 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 363 (480)
++++..++.+..... -+..+|+.-...+.+.+ .++++..+++.+.+..+. +...|+.-.-.+...|. .+++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444443322 14444444433444444 245555555555544322 33444444444444444 35555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-------
Q 011648 364 RRMIKLCEADADTYTMMIKMFCQG--------------GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK------- 422 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 422 (480)
+.+.+..+.|...|+.....+... +.++++.+.+...+...+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccc
Confidence 555555555555555444444333 2345555555555554422 445554333333332
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhccC
Q 011648 423 ----GIVSDSCVLLEDMIEKGIRPSG-ETFGKLRK---LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 423 ----g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+.++++++.++++.+.. |+. ..+..++. +....|..+++..++.++.++++
T Consensus 248 ~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 33566667777766532 332 22222221 12234566677777777776665
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=2.2e-07 Score=75.16 Aligned_cols=123 Identities=10% Similarity=0.149 Sum_probs=98.6
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCH--H
Q 011648 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FCQGGEL--E 391 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 391 (480)
+...|++++|...++...+... .+...+..+...+...|++++|...++++.+..+.+...+..+..+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3457888899999988877643 2567888888999999999999999999988667788888888888 7788998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 011648 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (480)
+|...++++.+.... +...+..+...+...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999998876532 57788888889999999999999999998754
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=6e-07 Score=68.04 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011648 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|...++++....+.+...+..+...+...|++++|...+++...... .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 345555666666677777777777776665566666777777777777777777777777666532 2456666677777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|++++|...++++.+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777776643 2245555566666655554
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=1e-07 Score=74.50 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011648 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|...|++.....+.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3334444444444444444444444444432 334444444444444444444444444444443333444444444444
Q ss_pred hcCCChhHHHHHHHHHHH
Q 011648 211 GKDPNLPRAREIFREMVD 228 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~m~~ 228 (480)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444555555444444443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=6e-07 Score=68.39 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.++++.+... .+...+..+..++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 3444444444445555555555544443344444455555555555555555555555444321 134444445555555
Q ss_pred CCChHHHHHHHHHHHH
Q 011648 422 KGIVSDSCVLLEDMIE 437 (480)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (480)
.|++++|...++++.+
T Consensus 97 ~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 97 MKDYTKAMDVYQKALD 112 (133)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555544
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=5.1e-07 Score=77.40 Aligned_cols=189 Identities=9% Similarity=-0.075 Sum_probs=109.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHh------------cCCC------
Q 011648 109 KIRQYQIMWDLVNAMRTKRMLNVETFCII-------MRKYARVQKVEEAVYTFNVMQK------------YGVT------ 163 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~------------~~~~------ 163 (480)
..++.+.|.+.|.++...+|.....|..+ ...+.+.++..+++..+..-.+ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46777788888888777777777777766 4555555555565555554443 1100
Q ss_pred --CCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCC--ChhhHH
Q 011648 164 --QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP--DIVTYG 239 (480)
Q Consensus 164 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~ 239 (480)
.-......+...+...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .| ....+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 0012334455566677777777777777665433233 55555556666777777777776443221 11 022455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCcC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011648 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
.+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 556666667777777777766654322132 224444555666666666666666666654
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.2e-06 Score=64.99 Aligned_cols=111 Identities=8% Similarity=-0.073 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345666667777777777777777777777666667777777777777777777777777776654 4456666667777
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011648 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+...|++++|...+++.....+.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77777777777777776664444554444443
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.3e-06 Score=74.91 Aligned_cols=189 Identities=7% Similarity=-0.088 Sum_probs=98.7
Q ss_pred hcCCHHHHHHHHHHhHhCCCCcCHHHHHHH-------HHHhhccCCHHHHHHHHHHHHH------------CCCC-----
Q 011648 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVL-------VHTYGVENRIEDAVDTFLEMEK------------NGIL----- 302 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~~----- 302 (480)
..++...|.+.|.++.... +-....|..+ ...+...++..+++..+..-.+ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4667777777777776654 3344555554 3334444444444444433332 1100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--HHHH
Q 011648 303 ---ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD--ADTY 377 (480)
Q Consensus 303 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 377 (480)
.-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+...|. ...+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 001223334455666667777776666665543 322234444445666666776666666443311111 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5666666666666666666666654322132 234455555666666666666666666654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=1.1e-06 Score=79.16 Aligned_cols=131 Identities=9% Similarity=-0.078 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++.+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666667777777777777777666432211 3567777778888888888888888888777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH-HHHHHHHH
Q 011648 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS-CVLLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 436 (480)
+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++...|+.++| ...++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888887776532 566777777777777777777 34555554
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.3e-07 Score=68.16 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|......+.+.|++++|+..|++.....+.+...|..+...+.+.|++++|+..+++..+.+ +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555556666666666666666666666665566666666666666666666666666666554 34455566666666
Q ss_pred HccCChhhHHHHHHHhhc
Q 011648 177 CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~ 194 (480)
...|++++|...|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665544
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=6.5e-07 Score=80.64 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+...|..+...+.+.|++++|+..|++.....+.+ ..+|..+...+.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666555422 345555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHH
Q 011648 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
. +.+..++..+..+|...|++++|...|++..+..+.+..++..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 334445555555555555555555555555443344444555555555555554444
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.8e-06 Score=65.15 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+.+.|++++|...|++..+..+.+...|..+..+|.+.|++++|...+++..+.+.. +...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 345556666777777777777777777766777777777788888888888888888777766532 5667777777777
Q ss_pred hCCChHHHHHHHHHHHHc
Q 011648 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~ 438 (480)
..|++++|...|+++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888777753
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=1.2e-06 Score=66.20 Aligned_cols=107 Identities=9% Similarity=0.043 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPS----MHTFSVL 415 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 415 (480)
.+..+...+.+.|++++|+..|+++.+..|.+...|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777778888888888888888877777788888888888888888888888887765321 111 2456677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011648 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 450 (480)
..++...|++++|++.|++.+.. .|++.+...+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 77888888888888888888763 4666555443
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=3.3e-07 Score=75.85 Aligned_cols=130 Identities=13% Similarity=0.011 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHc----CCCC--C
Q 011648 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNP--D 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~--~ 234 (480)
.++..+...+...|++++|...+++... ..+....++..+...+...|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444455555555554444433 00112233444445555555555555555544321 1010 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCC-cCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011648 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
...+..+...+...|++++|...+++.... +.. ....++..+..++...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223444455555555555555555554321 100 01122344445555555555555555444
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=4.3e-07 Score=70.42 Aligned_cols=98 Identities=13% Similarity=-0.001 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011648 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+.+.|++++|...|+.+....+.+...|..+..+|...|++++|...|+++...+.. +...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3456667778889999999999999999988889999999999999999999999999999887643 677888899999
Q ss_pred HhCCChHHHHHHHHHHHHc
Q 011648 420 CDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~ 438 (480)
...|++++|...|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=3.9e-06 Score=62.12 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++......+.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44555666666677777777777776665566666777777777777777777777777666542 25666666777777
Q ss_pred hCCChHHHHHHHHHHHHc
Q 011648 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~ 438 (480)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777654
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=7.3e-07 Score=69.07 Aligned_cols=98 Identities=6% Similarity=-0.044 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...+..+...+.+.|++++|...|+.....++.+...|..+...+...|++++|+..|+...+.+ +.++..+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555566667777777777777777777777777777777777777777777777777777664 4556666667777
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011648 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|+....
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777655
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=1.6e-07 Score=77.68 Aligned_cols=123 Identities=8% Similarity=-0.121 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC--------------hhhHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 011648 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
..+..+...+.+.|++++|...|.+..+.... |+ ...+..+..++...|++++|+..++.+.+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34445555666666666666666666653211 10 1445555555666666666666666666555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 011648 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (480)
+.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666665554321 4445555555555444444444
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=9.5e-07 Score=64.83 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLL 173 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 173 (480)
+...|..+...+.+.|++++|...|++.....+.+...+..+...+...|++++|+..+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555666666677777777777777666665566666666666666677777776666666543 33 455666666
Q ss_pred HHHHcc-CChhhHHHHHHHhhcC
Q 011648 174 SALCKS-KNVRKAQEIFDCMKDR 195 (480)
Q Consensus 174 ~~~~~~-g~~~~a~~~~~~~~~~ 195 (480)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666553
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=6.6e-06 Score=62.99 Aligned_cols=98 Identities=14% Similarity=-0.024 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011648 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+...+..+...+...|++++|...|+......+.+...|..+..++...|++++|...+++..+.+.. +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 45566667777777777777777777777766667777777777777777777777777777765432 56677777777
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 011648 419 LCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~ 437 (480)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777888888777777764
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=4.1e-06 Score=66.57 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|...+++..+.... +...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345555555666666666666666666655556666666666666666666666666666655422 4556666666666
Q ss_pred hCCChHHHHHHHHHHHHc
Q 011648 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~ 438 (480)
..|++++|...|+++++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666643
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=0.00017 Score=63.63 Aligned_cols=96 Identities=3% Similarity=-0.078 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCC-HHHHHHHH
Q 011648 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG--RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR-IEDAVDTF 293 (480)
Q Consensus 217 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 293 (480)
++++.+++.+.....+ +..+|+.-...+.+.| .+++++.+++.+.... +-|..+|+.-..++...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4444455554443222 3444444444444444 2455555555554443 3344444444444444444 35555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 011648 294 LEMEKNGILADVAMYNALIGAF 315 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~ 315 (480)
..+.+..+. |..+|+.....+
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHH
Confidence 555544322 444444443333
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.1e-06 Score=65.02 Aligned_cols=114 Identities=11% Similarity=-0.110 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
.+...+..+...+.+.|++++|.+.|++.....+.+ ...+..+...+...|++++|+..++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 467777778888888888888888888887766543 6777777778888888888888887777654 445667777
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011648 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+..++...|++++|...|++.....+.+...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77777788888888888877766444455555544443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=1.7e-06 Score=68.88 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...|..+...+.+.|++++|++.|++.....+.+...|..+...+...|++++|+..|++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666666777777777777777777776666666777777777777777777777777776654 4456666666667
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011648 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|++...
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777776655
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=1.3e-06 Score=66.99 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+...|++++|...|+......+.+...|..+...+...|++++|+..++...+.+ +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4566666677777777777777777777766666666667777777777777777777776666654 445566666666
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011648 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66667777777666666554
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=1.5e-06 Score=71.76 Aligned_cols=121 Identities=9% Similarity=-0.123 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV----------------ETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+..+...+.+.|++++|...|++.....+.+. .++..+...+...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666777777777776665544222 455555555556666666666665555543
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHH
Q 011648 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
+.+..++..+..++...|++++|...|++.....+.+...+..+..++...++.+++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555543344444455444444444433333
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=4.1e-06 Score=61.35 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 011648 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--SMHTFSVLIN 417 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 417 (480)
...+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34555566666667777777777777666555666666666677777777777777777666543 12 3556666666
Q ss_pred HHHhC-CChHHHHHHHHHHHHc
Q 011648 418 GLCDK-GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~-g~~~~a~~~~~~~~~~ 438 (480)
.+... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66667 7777777777666654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=2e-06 Score=65.09 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PS----MHTFSV 414 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 414 (480)
..+..+...+...|++++|...++++....+.+...+..+...|...|++++|...++++...... ++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 355666677777788888888888777766667777788888888888888888888877654311 12 567777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011648 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
+...+...|++++|...++++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 7888888888888888888887743 455555444433
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=2.3e-06 Score=64.66 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HHHH
Q 011648 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPS----GETF 447 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~ 447 (480)
...+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..++++++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778899999999999999999999987643 68899999999999999999999999998642 1222 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+..++...|++++|.+.+++..+..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 77888899999999999999998776554
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=3e-06 Score=63.41 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 011648 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+.+.|++++|...++++.+..+.+...|..+..++...|++++|...+++..+.... +...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4445556666777777777777777666666777777777777777777777777776665432 556666666677777
Q ss_pred CChHHHHHHHHHHHH
Q 011648 423 GIVSDSCVLLEDMIE 437 (480)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (480)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776664
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=3e-06 Score=63.42 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+...+.+.|++++|+..|++.....+.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44455667778888888888888877777777778888888888888888888888777765 44666777777777778
Q ss_pred CChhhHHHHHHHhhc
Q 011648 180 KNVRKAQEIFDCMKD 194 (480)
Q Consensus 180 g~~~~a~~~~~~~~~ 194 (480)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888777765
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=4.4e-05 Score=71.38 Aligned_cols=164 Identities=9% Similarity=0.043 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CcCH----HHHHHHHHHhhccCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 011648 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTS----FIYSVLVHTYGVENRIEDAVDTFLEMEK----NGILA-DVAM 307 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~ 307 (480)
+..+...|...|++++|.+.+..+...-. .++. .+.+.+...+...|+++.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777777766543210 1111 1233344445556777777777766532 22222 2445
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhC--CC--CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHh---cCCCC----HH
Q 011648 308 YNALIGAFCKANKFKNVYRVLKDMNSK--GV--AP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEAD----AD 375 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~ 375 (480)
+..+...|...|++++|..++.++... +. .+ ....+..++..|...|++++|..+++.... ....+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766542 11 11 134566677777777777777777777665 22222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011648 376 TYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555666667777777777666554
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2e-05 Score=61.01 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 380 (480)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+..+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444555555555555554443 222 23344444444445555555555554444334444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011648 381 IKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.5e-05 Score=72.06 Aligned_cols=196 Identities=7% Similarity=-0.052 Sum_probs=114.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCcC----------------HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC-CCC
Q 011648 242 VDVLCKAGRVDEALGIVKSMDSTVCRPT----------------SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LAD 304 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 304 (480)
.+.+.+.|++++|++.+..+.+...... ...+..+...|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778888888888888876542211 12356677777777888777777776543211 111
Q ss_pred HH----HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHh---c---
Q 011648 305 VA----MYNALIGAFCKANKFKNVYRVLKDMNS----KGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIK---L--- 369 (480)
Q Consensus 305 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--- 369 (480)
.. +.+.+...+...|+.+.+..++..... .+..+. ..++..+...+...|++++|..+++.+.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 112222223345677777777766543 122222 34556667777777777777777777655 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.+....++..+++.|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1112346666777777777777777777765532 11111 23445555566667777777777766654
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=4.9e-06 Score=62.93 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCC---CC----HHHHH
Q 011648 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE---AD----ADTYT 378 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~~ 378 (480)
..+..+...+...|++++|...+.+..+... .+...+..+...+...|++++|...++.+....+ ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555556666666666666666655422 2445555666666666666666666666665222 22 56667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011648 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 417 (480)
.+..++...|++++|.+.++++.+.. |+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 77777777777777777777777643 45544444433
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.3e-05 Score=60.48 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=51.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSAL 176 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 176 (480)
+...+.+.|++++|.+.|+.+....+.+. ..+..+...+...|++++|+..|+...+.. +.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455556666666666666655544222 455555566666666666666666655543 222 34455555555
Q ss_pred HccCChhhHHHHHHHhhcC
Q 011648 177 CKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~ 195 (480)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5666666666666555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=2.9e-05 Score=58.51 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 011648 345 IILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLING 418 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 418 (480)
.+...+...|++++|...|+.+.+..+.+. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344555666777777777776666444444 46666667777777777777777776654322 2 4556666667
Q ss_pred HHhCCChHHHHHHHHHHHHc
Q 011648 419 LCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~ 438 (480)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=3e-06 Score=80.20 Aligned_cols=118 Identities=9% Similarity=-0.019 Sum_probs=70.5
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 011648 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (480)
.+.+.|++++|.+.++++.+..+.+..+|..+..+|.+.|++++|.+.++++.+.... +...|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3455667777777777766665666667777777777777777777777776665422 556666666777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011648 429 CVLLEDMIEKGIRPSGETFGKLRKL--LIKEGREDVLKFLQE 468 (480)
Q Consensus 429 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 468 (480)
.+.++++++.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777776654311 22233333333 566666777766666
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=9.9e-06 Score=63.82 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 410 (480)
++..+...+...|++++|...+++..+. ...+ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555556666666555555441 0111 135556666666777777777776665532 1100 134
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011648 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777776632 1111 123456667777788888888888887776543
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=1.6e-05 Score=62.93 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
.+...|..+..+|.+.|++++|...++++++.+.. +...|..+..+|...|++++|...|++.++.
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34456777777788888888888888877776532 5677777777888888888888888877764
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=8e-06 Score=64.36 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCC----HHH
Q 011648 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADT 376 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~ 376 (480)
+..+...+...|++++|...+.+..+.... ++ ...+..+...+...|++++|.+.+++.... ...+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555544332100 01 124555556666666666666666665541 1111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777778888877777766532 1111 134566677778888888888888887764
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=2.7e-06 Score=80.48 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=80.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011648 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (480)
...+.+.|++++|.+.|++..+..+.+..+|..+...+.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345566777777777777777766677777777777777777777777777777764 445667777777777777777
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHH--HhcCCChhHHHHHHH
Q 011648 184 KAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFR 224 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 224 (480)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777766444455555555555 666677777777766
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=2e-05 Score=71.72 Aligned_cols=92 Identities=8% Similarity=-0.146 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011648 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
.+..+|..+..+|.+.|++++|...++++.+.... +...|..+..+|...|++++|+..|+++++.. +.+...+..+.
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44567888888888889999999998888876532 67788888888888899999999998888754 22566666777
Q ss_pred HHHHhcCCHHHHHH
Q 011648 452 KLLIKEGREDVLKF 465 (480)
Q Consensus 452 ~~~~~~g~~~~a~~ 465 (480)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666654
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.6e-05 Score=74.94 Aligned_cols=121 Identities=9% Similarity=-0.048 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...|..+...+.+.|++++|+..|++.....+.+ ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4456666666667777777777777666544422 3444455555555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhH
Q 011648 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
+.+...|..+..+|...|++++|...|++..+..+.+...+..+..++.+.++.++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555444333344444444444444444433
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=2.3e-05 Score=73.76 Aligned_cols=131 Identities=9% Similarity=-0.090 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666677777777777777777766422211 4677788888888899999999998888877
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH-HHHHHH
Q 011648 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV-LLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 436 (480)
+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.|+.+++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888898999999999999888876532 45677777777887787777664 444443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=4.4e-06 Score=62.08 Aligned_cols=84 Identities=7% Similarity=-0.125 Sum_probs=39.9
Q ss_pred cCChhHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011648 110 IRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 186 (480)
.|++++|+..|++....+ +.+..++..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555442 2334444555555555555555555555554443 333444455555555555555555
Q ss_pred HHHHHhhc
Q 011648 187 EIFDCMKD 194 (480)
Q Consensus 187 ~~~~~~~~ 194 (480)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=1.1e-05 Score=73.42 Aligned_cols=138 Identities=9% Similarity=-0.014 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011648 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..|..+...+.+.|++++|++.|++...... ....... .+...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-----------~~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-----------GSRAAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----------cCccccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456666777777777777777776654100 0000000 00000010 223445555666666
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011648 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.|++++|...+++..+..+.+...|..+..+|...|++++|+..|++..+.... +...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666544555566666666666666666666666666554211 3444555555555555555544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=2.2e-05 Score=62.17 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTK------------------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+..+......+.+.|++++|+..|...... .+.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777788888888888776654 22233445555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011648 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
+.+ +.+...|..+..++...|++++|...|++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 543 33445555555555555555555555555444
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=4.6e-06 Score=61.94 Aligned_cols=84 Identities=19% Similarity=0.057 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 011648 353 RGETDEAYRVFRRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (480)
.|++++|+..|+++.+. .+.+...+..+..+|...|++++|...++++.+.... +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555553 2334445555566666666666666666665554322 4555555556666666666666
Q ss_pred HHHHHHHH
Q 011648 430 VLLEDMIE 437 (480)
Q Consensus 430 ~~~~~~~~ 437 (480)
..+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=6.2e-06 Score=60.37 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------HHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN------LAAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 169 (480)
+...|..+...+.+.|++++|++.|++.....+.+...+..+...+...|++++|+..+++..+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 456777888888888999999999988888887788888888888888899999998888888754 223 4555
Q ss_pred HHHHHHHHccCChhhHHHHHHHh
Q 011648 170 NGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55666666666666665555444
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00016 Score=69.62 Aligned_cols=126 Identities=6% Similarity=-0.016 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--C
Q 011648 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ----------YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--K 146 (480)
Q Consensus 79 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~ 146 (480)
.|++.++.+...++ -+..+|+..-..+.+.|+ ++++++.++.+...++.+..+|..-...+.+.| +
T Consensus 47 eal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 44555544444332 344444444444444444 444555555554444444444444444444444 3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011648 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
++++++.++++.+.. +.+..+|+.-..++.+.| .++++.+.++++.+..+.|...|+...
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence 344444444444443 334444444444444444 444444444444443334444444433
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=5.6e-05 Score=58.38 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=65.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-
Q 011648 346 ILNGLIGRGETDEAYRVFRRMIKLCEA-------DA-----DTYTMMIKMFCQGGELEKAFKVWKYMKLK-----RFIP- 407 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p- 407 (480)
....+.+.|++++|+..|++.++..+. +. ..|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 334444555555555555555542222 22 37777888888888888888888877765 1124
Q ss_pred CHHHH----HHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 011648 408 SMHTF----SVLINGLCDKGIVSDSCVLLEDMIE-----KGIRPSGETFGK 449 (480)
Q Consensus 408 ~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 449 (480)
+...| .....++...|++++|+..|++.++ .|+.+.......
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34567 7788888888888888888888874 244444444333
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.5e-05 Score=71.72 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011648 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+.+.|++++|...|++.....+.+.. +...|+.+++...+ . ..+|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 445667777788889999999999887765442210 01111111111111 0 02344444455
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 011648 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 177 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 227 (480)
.+.|++++|...+++.....+.+...|..+..+|...|++++|...|++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555444334444455555555555555555555555544
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=6.9e-05 Score=57.87 Aligned_cols=102 Identities=10% Similarity=-0.047 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q 011648 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP------SM-----HTFSVLINGLCDKGIVSDSCVLLEDMIEK----- 438 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 438 (480)
..+......+.+.|++++|...|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345666778889999999999999998764221 22 38999999999999999999999999985
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 439 GIRPSG-ETF----GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 439 ~~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+.|+. ..| .....++...|++++|...+++..++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 114554 467 78889999999999999999999988654
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=0.00033 Score=67.50 Aligned_cols=176 Identities=6% Similarity=-0.046 Sum_probs=145.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...-++|++.++.+...++-+..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3445678999999999999888999888888877777 899999999999876 66888898888888888
Q ss_pred C--ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------
Q 011648 180 K--NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA-------- 248 (480)
Q Consensus 180 g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------- 248 (480)
| +++++.+.++++.+..+.+..+|+.-.-.+.+.| .++++++.++++++..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 9 6799999999999977889999998888888888 899999999999887544 777888777666653
Q ss_pred ------CCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHH
Q 011648 249 ------GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 249 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
+.++++++.++...... +-+...|..+-..+...+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999998888765 5677888888888877776444
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.9e-05 Score=71.11 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING-LC 420 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 420 (480)
.|..+..++.+.|++++|+..++++.+..+.+...|..+..+|...|++++|...|+++.+.... +...+..+... ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 45556666666666666666666666655556666666666666666666666666666544311 22333333332 12
Q ss_pred hCCChHHHHHHHHHHHH
Q 011648 421 DKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~ 437 (480)
..+..+++...|..|..
T Consensus 311 ~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 23444555555555543
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.97 E-value=5.3e-05 Score=55.83 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.|+..++++.+..+.+...+..+...|...|++++|...+++..+... .+...|..+..++...|++++|...|+++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666777777777777777777777777777776542 2566777777777777777777777777764
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00045 Score=52.75 Aligned_cols=111 Identities=8% Similarity=0.032 Sum_probs=82.1
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011648 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAF 394 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 394 (480)
+++++|...|++..+.|. |.. . +...|...+..++|.++|++..+. .++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467788888888887762 222 2 666666777777888888887763 566777777777777 67888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 011648 395 KVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 439 (480)
+.|++..+.| +...+..+...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888775 56677777777777 778888888888887766
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=2.4e-05 Score=60.31 Aligned_cols=100 Identities=10% Similarity=0.011 Sum_probs=68.9
Q ss_pred hCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011648 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL----------EKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
+.+.+++|.+.++...+..|.+...|..+..++...+++ ++|+..|++.++.+.. +...|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 445567777777777776677777777777777766554 4777777777776533 56677777777776
Q ss_pred C-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011648 422 K-----------GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 422 ~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
. |++++|++.|+++++. .|+...|...+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 5 4788888888888874 56666665554433
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00083 Score=51.23 Aligned_cols=111 Identities=9% Similarity=0.049 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChhHH
Q 011648 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEA 359 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 359 (480)
+++++|.+.|++..+.|. ++.. +...|...+.+++|...|++..+.| +...+..+...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345566666666655542 1222 4444445555555666666655542 34455555555555 5566666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011648 360 YRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 404 (480)
.++|++..+. .++..+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665552 345555555555555 556666666666665554
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.00017 Score=50.15 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011648 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...+..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666677777777788888888777777666667777777777777777777777777776654 3455555555555
Q ss_pred HHc
Q 011648 176 LCK 178 (480)
Q Consensus 176 ~~~ 178 (480)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=0.00012 Score=68.96 Aligned_cols=61 Identities=7% Similarity=-0.134 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 011648 376 TYTMMIKMFCQGGELEKAFKVWKYMKL-----KRFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+++.|..+|...|++++|..++++... .|.. |+ ..+++.|...|...|++++|..++++++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444454444444444332 1100 11 2334444445555555555555554443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00011 Score=53.37 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
..+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555566666666666655555555555555666666666666666666655554
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00011 Score=69.00 Aligned_cols=124 Identities=14% Similarity=0.027 Sum_probs=83.3
Q ss_pred HHHHcCCHhHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHh----cC-C---CCHHHHH
Q 011648 314 AFCKANKFKNVYRVLKDMNSK---GVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMIK----LC-E---ADADTYT 378 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~---~~~~~~~ 378 (480)
.+...|++++|..++++..+. -+.| ...+++.|...|...|++++|+.++++... .. + ....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677888888877776542 1111 234677788888888888888888887765 11 1 2235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 379 MMIKMFCQGGELEKAFKVWKYMKL-----KRFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.|...|...|++++|..+++++.+ .|.. |+ ..+...+..++...+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887653 2421 22 23445566677777888888888888875
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=8.9e-05 Score=54.58 Aligned_cols=78 Identities=6% Similarity=-0.093 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011648 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 80 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
|+..|+.+....+ .++..+..+...+.+.|++++|+..|++.....+.+...|..+...+...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444544443322 34555555555555555555555555555555554555555555555555555555555555443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=0.00033 Score=48.62 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444443321 1333444444444444444444444444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00038 Score=49.66 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
+.+...+..+..+|...|++++|...|+++.+.+.. +...|..+..+|...|++++|...+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666666666666666666666666655422 445666666666666777766666666653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.0002 Score=55.21 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=39.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011648 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+.+.+++|.+.++...+.++.+...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666655543 35555555555543 3344555555555554
Q ss_pred c
Q 011648 179 S 179 (480)
Q Consensus 179 ~ 179 (480)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00065 Score=48.38 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.++..+..+...+.+.|++++|+..|++..+.++.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777766666777777777777777777777776654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.35 E-value=0.0045 Score=54.91 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=63.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011648 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 448 (480)
..+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 457788888888887877899999999999998876 78777878888888999999999999998874 56777764
Q ss_pred H
Q 011648 449 K 449 (480)
Q Consensus 449 ~ 449 (480)
.
T Consensus 348 ~ 348 (372)
T 3ly7_A 348 W 348 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0058 Score=54.22 Aligned_cols=136 Identities=8% Similarity=-0.099 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHH--hC---CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---C--C---HHHHHHHHHHHHhC-C
Q 011648 339 NSRTCNIILNGLI--GR---GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG---G--E---LEKAFKVWKYMKLK-R 404 (480)
Q Consensus 339 ~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~---~~~A~~~~~~~~~~-~ 404 (480)
+...|...+++.. .. .+..+|..+|+++.+..|.....|..+..+|... + . .......++..... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 4555555554432 22 2245677777777766666666666555544311 1 0 11111112211111 1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 011648 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++...+++.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 23577888888777777899999999999999875 78888888888999999999999999999988764
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.23 E-value=0.0012 Score=46.75 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMH-TFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
..+...|++++|...++++.+.... +.. .+..+..++...|++++|...|+++++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555544321 334 5555555555555555555555555543
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.00078 Score=47.72 Aligned_cols=58 Identities=7% Similarity=0.190 Sum_probs=41.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...+.+.|++++|.+.|++.....+.+.. .+..+...+...|++++|++.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44556677777777777777776666666 77777777777777777777777776654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.97 E-value=0.019 Score=58.23 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=75.3
Q ss_pred HHHhcCCHHHHHH-HHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011648 244 VLCKAGRVDEALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 244 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
.....+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345677777766 44221 102223666677777788777776553211 1123345678888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+...++.+....
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 888775433 2567788888888888888888888887653 33344444445555555544444444
Q ss_pred C
Q 011648 403 K 403 (480)
Q Consensus 403 ~ 403 (480)
.
T Consensus 736 ~ 736 (814)
T 3mkq_A 736 T 736 (814)
T ss_dssp T
T ss_pred c
Confidence 3
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0027 Score=58.69 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=60.5
Q ss_pred hCCChhHHHHHHHHHHh----c-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHH
Q 011648 352 GRGETDEAYRVFRRMIK----L-CEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~----~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~ 416 (480)
..|++++|+.++++..+ . .+. ...+++.|..+|...|++++|..+++++.. .|. .|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677888887777665 1 111 235677888888888888888888887663 231 122 35678888
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 011648 417 NGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~ 437 (480)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888999998888888764
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.90 E-value=0.073 Score=39.03 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011648 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 406 (480)
+...+...+..+...|+.+.-.+++..+....+|++...-.+..+|.+.|+..+|.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666666655556666666666677777777777777777766666643
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.0071 Score=55.92 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=53.4
Q ss_pred HHhCCChhHHHHHHHHHHhc----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 011648 350 LIGRGETDEAYRVFRRMIKL----CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSV 414 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~ 414 (480)
+.+.|++++|+.++++.... ..+ ...+++.++.+|...|++++|+.+++++.. .|. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666541 111 234566677777777777777777776553 121 122 345677
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 011648 415 LINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~ 436 (480)
+...|...|++++|+.++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777788777777777775
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.75 E-value=0.015 Score=40.49 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 95 HSVRAYHSMIESLAKIRQ---YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+..++...++ .++|..++++....++.+......+...+.+.|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567777777777754443 6788888888888777778888888888888888888888888887764
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.016 Score=40.23 Aligned_cols=65 Identities=5% Similarity=-0.101 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011648 372 ADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (480)
.++..+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444443332 35555555555544422 444444455555555555555555555554
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.64 E-value=0.017 Score=43.93 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHH
Q 011648 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIP--SMHTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 431 (480)
..+.+-|.+.....+++..+...+..++++.+ +++++..+++...+.+ .| +...+..+.-+|.+.|++++|.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444555544444567777777777777766 4557777777766653 12 244555566667777777777777
Q ss_pred HHHHHHcCCCCCH
Q 011648 432 LEDMIEKGIRPSG 444 (480)
Q Consensus 432 ~~~~~~~~~~p~~ 444 (480)
++.+++. .|+.
T Consensus 94 ~~~lL~i--eP~n 104 (152)
T 1pc2_A 94 VRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHH--CTTC
T ss_pred HHHHHhc--CCCC
Confidence 7777763 4543
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.027 Score=47.96 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHH
Q 011648 356 TDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQG-----GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSD 427 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 427 (480)
...|...++++.+..+. +...|..+...|.+. |+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666666664443 456788888888884 88888888888888765322467777778888774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 428 SCVLLEDMIEKGIR--PSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 428 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
+.+.+++.+..... |+....+. +.-++|..+++++..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 88888888887666 55433332 334556666655544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.62 E-value=0.011 Score=54.75 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCC---CCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHh----cC-CC---CHHH
Q 011648 312 IGAFCKANKFKNVYRVLKDMNSKG---VAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----LC-EA---DADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~---~~~~ 376 (480)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.+++++.. .. +. ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788999999988887531 2222 34678888889999999999999988876 11 22 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999887763
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.055 Score=54.90 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=74.5
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011648 108 AKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 108 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 186 (480)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+ +.. .-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHH
Confidence 45677777766 44211 112334666777777777777776542 111 1123345567888887
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 011648 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....
T Consensus 673 ~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 673 DLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7765443 567788888888888888888887776642 344455555566666555554444433
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.61 E-value=0.006 Score=56.37 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=61.3
Q ss_pred cCCHhHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHh----c-CC---CCHHHHHHHHH
Q 011648 318 ANKFKNVYRVLKDMNSK---GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----L-CE---ADADTYTMMIK 382 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~---~~~~~~~~l~~ 382 (480)
.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++.. . .+ ....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888888776542 12222 35678888888888899888888888775 1 11 22356888888
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 011648 383 MFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~ 402 (480)
.|...|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887764
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.58 E-value=0.035 Score=39.53 Aligned_cols=67 Identities=4% Similarity=-0.040 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+...+.+.|++..|...|+..... +......+..+..++.+.|+++.|...+++..+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 46667777778888888888888888776543 22456677777777777777777777777776653
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.57 E-value=0.015 Score=44.27 Aligned_cols=86 Identities=16% Similarity=-0.022 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 011648 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG---IVSDSCVLLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 463 (480)
....+.+-|.+....|. ++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35566777777767665 68889889999999988 6679999999999865 34 345566777788999999999
Q ss_pred HHHHHHHHhccCC
Q 011648 464 KFLQEKMNLLVKE 476 (480)
Q Consensus 464 ~~~~~~~~~l~~~ 476 (480)
.++++.+.+.++.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999988875
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.17 Score=39.47 Aligned_cols=127 Identities=11% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011648 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (480)
....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|...|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34567777777666554 1456677777777777777777777766543 444555556666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
++-+.....| -++.....+...|+++++.++|.+. |-.|.. +......|-.+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6555555444 1344444555667777777766543 221111 11112245566666666554
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.19 Score=39.28 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=52.1
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011648 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++..
T Consensus 15 AL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344566666666655542 455566666666666666666666655432 333344445555555554
Q ss_pred HHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011648 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++-+.....| -++....++...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444443333 123333444455666666666543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.22 E-value=0.042 Score=39.06 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
.+..-+..+...+...|++..|...++.+.+.. -.+....+..+..++.+.|+++.|..+++++.+. .|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 456667788999999999999999999887531 1235678899999999999999999999999874 45543
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.14 E-value=0.12 Score=38.76 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011648 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+++++|.++|+.+++..-.- ...|......-.+.|+...|.+++.+.+..+.+| ...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 66777777777665432222 5566666666667777777777777777665443 33333333
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.90 E-value=0.7 Score=39.39 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhcc-CCH
Q 011648 216 LPRAREIFREMVDTGCNPD---IVTYGIMVDVLCKA-----GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE-NRI 286 (480)
Q Consensus 216 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 286 (480)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++....+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666654 344 44677777777773 78888888888877764222356666677777774 778
Q ss_pred HHHHHHHHHHHHCCCC
Q 011648 287 EDAVDTFLEMEKNGIL 302 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~ 302 (480)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888887776554
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.89 E-value=1.7 Score=43.82 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=149.2
Q ss_pred HHccCChhhHHHHHHHhhcCC-CCC--hhhHHHHHHHHhcCCChhHHHHHHHHHHHcCC--C-----CChhhHHHHHHHH
Q 011648 176 LCKSKNVRKAQEIFDCMKDRF-IPD--SKTYSILLEGWGKDPNLPRAREIFREMVDTGC--N-----PDIVTYGIMVDVL 245 (480)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----~~~~~~~~l~~~~ 245 (480)
....|+.+++..++....... ..+ ...-..+.-+....|..+++..++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456677777777776654311 112 22333444455666666678887777664321 0 0011111222222
Q ss_pred HhcCC-HHHHHHHHHHhHhCCCCcCH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCC
Q 011648 246 CKAGR-VDEALGIVKSMDSTVCRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA--FCKANK 320 (480)
Q Consensus 246 ~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~ 320 (480)
+-.|. -+++.+.+..+.... .+.. ..-..+...+...|+-+....++..+.+. .+......+..+ +...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 22332 245555555555432 1111 12223344456778888888888877654 233444434433 446788
Q ss_pred HhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011648 321 FKNVYRVLKDMNSKGVAPNSRT--CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (480)
.+.+..+++.+... ..|.... ...+..+|+..|+.....+++..+.+....+..-...+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888888764 1222222 12344567788898887788888887444444444445555566777777778877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.+.+.+ .|.+..-..+.-+....|.. .+++.++..+.. .+|..+-...+.++..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 666654 34444444444455555553 678888888864 3456555545545443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.69 E-value=0.34 Score=36.45 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhCCCCCChh-hHHHHHH------HHHhCCChhHHHHHHHHHHhcC
Q 011648 304 DVAMYNALIGAFCKANKF------KNVYRVLKDMNSKGVAPNSR-TCNIILN------GLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 5566666666553 333221 1111111 1123378999999999987744
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011648 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+.-...|....+.-.+.|++.+|.+++...+..+..| ...+...++-
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 4448888888899999999999999999999988664 4455544443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.43 E-value=0.083 Score=38.60 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=61.7
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCC
Q 011648 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK---AFKVWKYMKLKRFI-PSMHTFSVLINGLCDKG 423 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g 423 (480)
...........+.+-+........++..+-..+..++++..+... ++.+++.+...+.+ -.....-.+.-++.+.|
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 333344445556666665555455777777778888888776655 77888877765411 12344455666788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCH
Q 011648 424 IVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~p~~ 444 (480)
++++|.++++.+++. .|+.
T Consensus 89 ~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTC
T ss_pred hHHHHHHHHHHHHHh--CCCC
Confidence 888888888888864 4543
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.33 E-value=0.57 Score=34.46 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHH
Q 011648 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
.-.|..++..++..+.... .+..-+|-+|--....-+-+...++++.+..-+. . ...|+......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--i----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--L----------DKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--G----------GGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--c----------HhhhcHHHHHH
Confidence 3456667777776666553 2333444444333333444444455554443221 1 11222222222
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011648 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 222 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
.+-.+- .+.......++.....|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222211 13333444455555666666666666654332 245555555566666666666666666666655554
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.22 E-value=5.5e-05 Score=68.44 Aligned_cols=266 Identities=12% Similarity=0.113 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011648 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
.+..|..|..+....+++.+|++.| ++. .|+..|..++.+..+.|.+++-...+....+. ..++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 4556777777777777776666544 221 24445666777777777777777766655442 3344555667777
Q ss_pred HhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHH
Q 011648 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++...|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 77777765533322 125555566667777777777766666554332 33344556666776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 011648 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
.+.-++ ..++.+|..+-.+|...+.+.-|.-.--.++-. ......++..|...|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 543222 136678888888898888887766554444432 223344667788889999988888888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhCCChHHHHH
Q 011648 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP------SMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 430 (480)
-.....+|+-|.-.|++- ++++..+.++..-.+ +++- ....|..++-.|++-.+++.|..
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 667888888888888876 566666655543322 2211 23457777777777777776543
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.05 E-value=0.27 Score=35.90 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011648 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE---AYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 395 (480)
...+.+-|.+....|. |+..+--.+..++++...... ++.+++.+.+...| .......|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444433322 344444444444454444443 44455544442211 22333344455555555555555
Q ss_pred HHHHHHhC
Q 011648 396 VWKYMKLK 403 (480)
Q Consensus 396 ~~~~~~~~ 403 (480)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.01 E-value=3.4 Score=41.73 Aligned_cols=267 Identities=13% Similarity=0.003 Sum_probs=149.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCChhhHHHHHHHhhcCCC--------CChhhHHHHHHH
Q 011648 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAA--FNGLLSALCKSKNVRKAQEIFDCMKDRFI--------PDSKTYSILLEG 209 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~ 209 (480)
+.+..|+.++++.+++.....+-..+..+ -..+.-+....|..+++..++........ +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888889888877654221223332 22333345566666667776665443111 112222333334
Q ss_pred HhcCCC-hhHHHHHHHHHHHcCCCCChhh--H--HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHH--hhc
Q 011648 210 WGKDPN-LPRAREIFREMVDTGCNPDIVT--Y--GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT--YGV 282 (480)
Q Consensus 210 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 282 (480)
++-.|. -+++.+.+..+.... +... . ..+.-.+.-.|+.+....++..+.... +..+...+.-+ +..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 443443 246667777666532 2211 1 123334556688787788888776532 33333333333 447
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhH
Q 011648 283 ENRIEDAVDTFLEMEKNGILADVAM-YN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358 (480)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 358 (480)
.|+.+.+..+.+.+... .+... |. ++.-+|+..|+......++..+.... ..+......+.-++...|+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 YGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred CCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 78889998888888764 23222 22 23446778899888888999888751 2233333333344555677777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011648 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGEL-EKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
+.++++.+.+...|...--..+.-+....|+. .++..++..+... ++..+-..-+.++
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 77777766664445554445555555555554 5778888888643 4554444333333
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.49 E-value=0.17 Score=34.79 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011648 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+.=+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566667777777788888888888888888888888888888887755555555666554
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.44 E-value=5.8e-05 Score=68.32 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=133.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHH
Q 011648 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
.+.+|..|..+....+.+.+|++.|-+. -|...|..++.+..+.|.+++-.+++...++.. .++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4456666777776666666665544221 145556666777777777777776666655542 23334456666
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--------------------CCCC
Q 011648 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--------------------GVAP 338 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p 338 (480)
+|++.+++.+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+..- .-.-
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777766655433222 1244444555666666666666666555443221 1123
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011648 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
++.||..+-.+|...+++.-|.-.--.+.- .+.-...++..|-..|.+++-+.+++...... .....+|+.|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 678999999999999999887665444442 22223456778889999999999999877432 2467889999988
Q ss_pred HHhCCChHHHHHHHHH
Q 011648 419 LCDKGIVSDSCVLLED 434 (480)
Q Consensus 419 ~~~~g~~~~a~~~~~~ 434 (480)
|++- ++++..+.++.
T Consensus 273 YsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 273 YSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHSS-CTTHHHHHHTT
T ss_pred HHhc-CHHHHHHHHHH
Confidence 8875 45555555543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.26 Score=48.54 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=44.3
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011648 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
.-|...|+++-|+++-++...-.|.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345677888888888888888778888888888888888888888888887763
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.57 E-value=0.35 Score=43.94 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011648 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 192 (480)
.++..+...|++.+|+..+..+.... |-+...+..+|.++.+.|+..+|.+.|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555554444432 334445555555555555555555555544
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.54 E-value=0.72 Score=31.79 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=39.5
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011648 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+.+...+.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344555666666666667777777777777777777777777777666544444444554443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.08 E-value=1.4 Score=32.28 Aligned_cols=77 Identities=9% Similarity=-0.027 Sum_probs=50.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 369 LCEADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
+..|+..+--.+..++++..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4456777766777777776554 46777777777655222345555666778888888888888888876 355544
Q ss_pred HH
Q 011648 446 TF 447 (480)
Q Consensus 446 ~~ 447 (480)
-.
T Consensus 113 QA 114 (134)
T 3o48_A 113 QV 114 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.38 E-value=0.68 Score=42.04 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=26.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (480)
+..+...|+.+++...+..+....|.+...|..++.++.+.|+..+|.+.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444455555554444444444444445555555555555555555544443
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.16 E-value=0.71 Score=33.74 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011648 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.=+..+-++.+...++.|++.+..+.+.+|.+.+|+..|.++|+-++.+..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33455566666677778888888888888888888888888888887755555556666554
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.73 E-value=3.3 Score=43.70 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCC------------------
Q 011648 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------------------ 371 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------ 371 (480)
.++..+...+..+.+.++..-... +...--.+..++...|++++|.++|.+...+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344455566666665554433221 333334455667778888888888876643211
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 011648 372 -----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 372 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 442 (480)
.-..-|..++..+.+.+.++.+.++-+.+++....-+. ..|..++.++...|++++|...+-.+-+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 11234667778888888888888887776653222121 2577888888899999999888887766544
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 011648 443 SGETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a 463 (480)
-...+..|+..++..|..+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 356677787777777765444
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=8.5 Score=35.54 Aligned_cols=253 Identities=10% Similarity=0.085 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHH----HhhccC
Q 011648 214 PNLPRAREIFREMVDT-----GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH----TYGVEN 284 (480)
Q Consensus 214 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 284 (480)
|+++.|++.+..+.+. ....+......++..|...|+++...+.+..+....... ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6788888877666542 233345567778888999999998888777665432122 222223332 222233
Q ss_pred CHHHH--HHHHHHHH---HCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHH
Q 011648 285 RIEDA--VDTFLEME---KNGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPN---SRTCNIILNGLI 351 (480)
Q Consensus 285 ~~~~a--~~~~~~~~---~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~ 351 (480)
..+.. ..+.+.+. +..+... ......|...|...|++.+|..++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22221 11111111 1112221 123355677888889999999999888642 22211 235666777888
Q ss_pred hCCChhHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHH
Q 011648 352 GRGETDEAYRVFRRMIK---LCEADA----DTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFS----VLINGL 419 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~ 419 (480)
..+++..|..++.++.. ...+++ ..+...+..+...+++.+|.+.|.++.+. ....+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88999999888888753 233332 34566777777888888888877776542 1111222222 222233
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 011648 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG--REDVLKFLQ 467 (480)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~ 467 (480)
.-.+...+-..++........-++...+..++++|.... +++.+.+.+
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 333444444444444443333345566777777776642 344444433
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.45 E-value=6.5 Score=34.05 Aligned_cols=111 Identities=8% Similarity=0.101 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+.+.+.+++++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666677777888887776543 2234455665555443 455556677777777776766
Q ss_pred HHHccCChh-hHHHHHHHhhc-------CCCCChhhHHHHHHHHhcCCChhHHHHHH
Q 011648 175 ALCKSKNVR-KAQEIFDCMKD-------RFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 175 ~~~~~g~~~-~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.+.....-+ .-.++++.+.. ...-++.....+...|.+.+++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 665533211 11222222221 11124555666666666666666655544
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.44 E-value=1.6 Score=31.95 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011648 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.-+..+-++.+...+..|++......+++|.+.+++..|.++|+.+.....+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34555666666667777777788888888888888888888887777655444555655543
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.44 E-value=6.2 Score=41.64 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=108.0
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHH--------------------cCC
Q 011648 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD--------------------TGC 231 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--------------------~~~ 231 (480)
++..+...+..+.+.++..... .++...-.+..++...|++++|.+.|.+.-. ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4445555566655555443322 2344444555666666666666666654310 000
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011648 232 --NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT----SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 232 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
..-..-|..++..+-+.|.++.+.++-....+...+.+ ...|..+.+.+...|++++|...+-.+..... -.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KK 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HH
Confidence 00112366777888888888888887776654321212 22577788888888999999888888776543 35
Q ss_pred HHHHHHHHHHHHcCC------------HhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhCCChhHHH-HHHHHHHh
Q 011648 306 AMYNALIGAFCKANK------------FKNVYRVLKDMNSK--GVAPNSRTCNIILNGLIGRGETDEAY-RVFRRMIK 368 (480)
Q Consensus 306 ~~~~~li~~~~~~~~------------~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 368 (480)
..+..++...|..|. .++..+++....+. .+...+.-|..|-.-+..+|++..|- -+|+.+.+
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 667777776666554 34444555432221 11112234555555566677776554 45555554
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.26 E-value=3.5 Score=30.67 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 011648 370 CEADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 445 (480)
..++..+--.+..++++..+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 357777777777888877654 46777888877654322334455566678888888888888888887 356543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.23 E-value=9.1 Score=35.33 Aligned_cols=254 Identities=8% Similarity=0.068 Sum_probs=147.9
Q ss_pred cCChhhHHHHHHHhhc------CCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHH-cCCCCChhhHHHHHHH----HHh
Q 011648 179 SKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDV----LCK 247 (480)
Q Consensus 179 ~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~----~~~ 247 (480)
.|+++.|.+.+-.+.+ ...........++..|...++++...+.+..+.+ .|..+.. ...+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3778888887766653 2334456678889999999999999888876653 3333222 2233332 222
Q ss_pred cCCHHH--HHHHHHHhHh--CC-CCc---CHHHHHHHHHHhhccCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHH
Q 011648 248 AGRVDE--ALGIVKSMDS--TV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEKN--GILAD---VAMYNALIGA 314 (480)
Q Consensus 248 ~g~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~ 314 (480)
....+. -..+.+.+.. .| +.. .......|...+...|++.+|.+++..+... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 2222222211 11 111 1223456788999999999999999998642 32222 3456777888
Q ss_pred HHHcCCHhHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHh--cCCCCHHHHHH----HHH
Q 011648 315 FCKANKFKNVYRVLKDMNS----KGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTM----MIK 382 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~----l~~ 382 (480)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|..+.. ....+...+.. ++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 9999999999999998753 222222 23456667777888999999988888765 22233332222 122
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHH
Q 011648 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK--GIVSDSCVLLED 434 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~ 434 (480)
+..-.+....-..++.........++...|..++.+|... .+++.+.+.|+.
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222222233333332222224677788888888654 345555555543
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.19 E-value=1.4 Score=43.39 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 011648 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
.+.+...|+++-|.++-++....-+ -+..+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4556778999999999999987642 36889999999999999999999988876
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.05 E-value=7.4 Score=33.99 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++ ++.+.+.++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5556666777778888877776542 2234455655554444 355556677777766666666
Q ss_pred HHHccC
Q 011648 175 ALCKSK 180 (480)
Q Consensus 175 ~~~~~g 180 (480)
.+....
T Consensus 103 L~~~~~ 108 (336)
T 3lpz_A 103 CLRLFQ 108 (336)
T ss_dssp HHTTSC
T ss_pred HHHhCC
Confidence 655443
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.57 E-value=18 Score=34.90 Aligned_cols=77 Identities=9% Similarity=-0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCC
Q 011648 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (480)
...+..+.+.+++...+..+.. .+.+...-+....+....|+..+|......+=......+..+..++..+.+.|
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCC
Confidence 4455666677777766654332 24455555566667777787666655555443322334455555555555544
Q ss_pred Ch
Q 011648 215 NL 216 (480)
Q Consensus 215 ~~ 216 (480)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.31 E-value=5 Score=30.79 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHh
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
++..+.+++...+++..|...|+++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455555566666666666665543
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.07 E-value=8.3 Score=28.29 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 338 PNSRTCNIILNGLIGRGET---DEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 338 p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
|+..+--....++++..+. .+++.+++.+.+..+ .....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444433344444444332 345555555554322 12344445555566666666666666666554
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.60 E-value=7.1 Score=32.77 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=41.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011648 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..+.+.|+++++++....-.+..|.|...-..++..+|-.|++++|.+=++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556777777777777777777777777777777777777777777777766654
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.02 E-value=4.3 Score=34.07 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCh
Q 011648 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 425 (480)
....+.|++++|+.....-++..|.|...-..+++.+|-.|++++|.+-++...+.... |....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~---- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA---- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH----
Confidence 34567889999999988888888899999999999999999999999988888775421 122344444443211
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcc
Q 011648 426 SDSCVLLEDMIEKG-----IRPSGETFGKLRKLLI--KEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 426 ~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~l~ 474 (480)
=.+...-+ +.....-...++.++. ..|+.++|.++-.+..+..
T Consensus 81 ------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 81 ------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11111111 1122333445555544 4689999999888887653
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.60 E-value=22 Score=31.07 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011648 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 303 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
-++.....+...|.+.+++.+|...|- . |..+....+..++..+...+...++--++.+ .+-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR--------------aVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR--------------AVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH--------------HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH--------------HHH
Confidence 366677777788888888888877762 2 3333335665555555444433222222211 223
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011648 383 MFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~ 401 (480)
-|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3455667777777665544
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.11 E-value=14 Score=29.42 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011648 92 NYEHSVRAYHSMIESLAK--IRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.++.|+.-....+...-- .+...++.++|..|...++ .-+..|......+-..|++++|.++|+.-++.+-.|-
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344455443333332222 3445566677777766665 4555666666666666777777777766666655553
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.93 E-value=13 Score=27.76 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=44.3
Q ss_pred CCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011648 337 APNSRTCNIILNGLIGRGET---DEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (480)
.|+..+--....++++.... .+++.+++.+.+..+ ........|.-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45655555555666666544 456677777766433 234455566777888888888888888887764
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.11 E-value=15 Score=28.16 Aligned_cols=60 Identities=5% Similarity=0.006 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHh--cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011648 342 TCNIILNGLIGRGETDEAYRVFRRMIK--LCEAD-------ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (480)
.+-.-+..+...+.++.|+-+.+.+.. ...++ ..++..+.+++...|++..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344446667778888888887777665 23333 2366778899999999999999999865
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.33 E-value=19 Score=33.05 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011648 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
++..+...|.+.|+++.|.+.|.++...- ...-...+-..+..+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45556666666666666666666665432 122234555566666666666666666666543
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.90 E-value=31 Score=31.02 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=47.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHhHhCC--CCcCHHHHH---
Q 011648 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD-----IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV--CRPTSFIYS--- 274 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~--- 274 (480)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....... +.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666667777777666666654211111 1223344556666777777777666654321 112222211
Q ss_pred -HHHHHhh-ccCCHHHHHHHHHHH
Q 011648 275 -VLVHTYG-VENRIEDAVDTFLEM 296 (480)
Q Consensus 275 -~l~~~~~-~~g~~~~a~~~~~~~ 296 (480)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 567777776666554
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.73 E-value=14 Score=33.85 Aligned_cols=96 Identities=9% Similarity=-0.100 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHh--cCCCCHHHHHH---
Q 011648 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGV--APNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTM--- 379 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~--- 379 (480)
+...+...|.+.|+++.|.+.+.++..... .--...+..+++.+...+++..+...+.++.. ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566677888888888888888888876422 22345666777778888888888888887765 22233332222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHh
Q 011648 380 -MIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 380 -l~~~~~~~g~~~~A~~~~~~~~~ 402 (480)
-+..+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 22223345677777776666543
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.01 E-value=57 Score=31.75 Aligned_cols=80 Identities=6% Similarity=0.012 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 011648 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK--- 317 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 317 (480)
....+.-.|+++.|.+.+-.. ...+..++...+..|.-.+- . ..+..........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 445566688999998877754 24455555555554443332 1 111110000012236667777765
Q ss_pred cCCHhHHHHHHHHH
Q 011648 318 ANKFKNVYRVLKDM 331 (480)
Q Consensus 318 ~~~~~~a~~~~~~~ 331 (480)
..+..+|.+.|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777888777666
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.47 E-value=22 Score=26.81 Aligned_cols=72 Identities=6% Similarity=0.016 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 011648 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
.++.|+.-....+...-- .+++.++|..|..+++ .-+..|......+-..|++++|.++|+.-++.+-.|-.
T Consensus 63 ~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344565554444433322 2337778888877776 56666777777777888888888888877777666543
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.17 E-value=38 Score=29.30 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC---CChhHHHHHHHHHHhcCCCCHHHHHHH
Q 011648 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR---GETDEAYRVFRRMIKLCEADADTYTMM 380 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l 380 (480)
++.....+...|.+.|++.+|...|-. |..-+...+..++.-+... |...++--++.+ .
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 667777777888888888887776631 1111344455555444443 443333222211 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011648 381 IKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~ 401 (480)
+-.|...|+...|..+++...
T Consensus 195 VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 233445678888888777654
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.13 E-value=50 Score=29.72 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=13.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHH
Q 011648 202 TYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555444
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.79 E-value=21 Score=29.88 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=7.9
Q ss_pred HHHHHhcCChhHHHHHH
Q 011648 104 IESLAKIRQYQIMWDLV 120 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~ 120 (480)
+...++.|+++.+..++
T Consensus 9 L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33344555555444444
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.36 E-value=55 Score=28.97 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI--VSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 466777888888888888888887532211 12334444445544332 3456677777777666544444333333
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.57 E-value=34 Score=26.24 Aligned_cols=73 Identities=8% Similarity=-0.000 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 011648 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
.+..|+.-....|...-.. +.+.++|..|..+++ .-+..|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 58 ~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4455666555555333222 346778888888777 566677777888888888888888888888877666544
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.77 E-value=30 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=22.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHccCChhhHHHHHH
Q 011648 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLA---AFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~ 190 (480)
.+...++.|+.+....+++ .|..++.. .-...+...+..|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 3445566677655544443 33222211 11123444455666555444443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.21 E-value=70 Score=28.27 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHH
Q 011648 274 SVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
..++.-|...|+.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555555555555555554
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.08 E-value=46 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011648 149 EAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
.+.++|..|...|+-.. ...|......+...|++.+|..+|+.-.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555544443332 22344444444455555555555554443
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.96 E-value=34 Score=23.54 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011648 78 TLAFCFFKWAEKQQNYEHSVRAYHSMI--ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 78 ~~A~~~f~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
++|..+-+|+.... + .-...+| ..+...|++++|..+.+... .||...|..|- -.+.|-.+++...+.
T Consensus 23 qEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 23 EEALCIAEWLERLG----Q-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 35666666665442 2 2222222 33445555555555443221 13333333332 224454555544444
Q ss_pred HHHhcC
Q 011648 156 VMQKYG 161 (480)
Q Consensus 156 ~~~~~~ 161 (480)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 444443
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.21 E-value=52 Score=25.39 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=21.5
Q ss_pred CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhccC
Q 011648 440 IRPSGETFG--KLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 440 ~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
..|..-.|- .....+...|..++...++..+.+.++
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 345444432 334556667777777777777766554
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.82 E-value=36 Score=23.46 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhc
Q 011648 79 LAFCFFKWAEKQ 90 (480)
Q Consensus 79 ~A~~~f~~~~~~ 90 (480)
+|..+-+|+...
T Consensus 25 EA~tIAdwL~~~ 36 (116)
T 2p58_C 25 EANCIAEWLHLK 36 (116)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555555555443
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.07 E-value=38 Score=23.39 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 011648 112 QYQIMWDLVNAMRTKRMLNVETFCIIM--RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189 (480)
Q Consensus 112 ~~~~a~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 189 (480)
..++|..+-+.+...+. .-...+| ..+...|++++|..+.+.+. .||...|-+|- -.+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 44555555555555442 2223333 34568899999998876654 78888887764 45778888888888
Q ss_pred HHhhcCCCCChhhHHH
Q 011648 190 DCMKDRFIPDSKTYSI 205 (480)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (480)
.++.....|....|..
T Consensus 93 ~~la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 93 NRLARSQDPRIQTFVN 108 (116)
T ss_dssp HHHTTCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 7777755565555544
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.61 E-value=72 Score=25.21 Aligned_cols=139 Identities=12% Similarity=-0.000 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011648 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
+...-...+.++.+.++.+.. ..+..+.. .++...-...+.++.+.++.+.. ..+..+.. .++..+-...+.+
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~--d~~~~vr~~a~~a 135 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK--DEDWFVRIAAAFA 135 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT--CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh--CCCHHHHHHHHHH
Confidence 444444444455555543222 22222222 23444444555555555543322 22222222 3555555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011648 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 457 (480)
+...|..+ +...+..+... ++..+-...+.++.+.+. .++...+..+.+. ++..+-...+.++.+.
T Consensus 136 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 136 LGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66655543 33333333332 455555556666666554 4555555555542 3455544555555443
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.44 E-value=61 Score=29.70 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011648 76 AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 76 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
..+.|+++-.+ .+++-....|..-.+.+...|++++|..+--..+..-.-+++|.+.+-..=...|+..--+.+|.
T Consensus 344 n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 344 NPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 33455555433 24555666677777788888888888888776655434666666555544444455555666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011648 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 190 (480)
.+.+.| ..+..--.-+++.-...|+.+-.++++.
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 666655 3444333334444444555444444443
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.93 E-value=61 Score=27.36 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=7.4
Q ss_pred HHhhccCCHHHHHHHHH
Q 011648 278 HTYGVENRIEDAVDTFL 294 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~ 294 (480)
...+..|..+-+.-+++
T Consensus 166 ~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 166 HITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 33344455544444443
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.95 E-value=44 Score=27.51 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=18.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
-++.+...++|++|.+++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46777888889998888887654
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.27 E-value=81 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011648 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 356 ~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 407 (480)
...+.++|..|.. ....-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555544 223334445555555555555555555555555544444
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.25 E-value=84 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=11.1
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 011648 106 SLAKIRQYQIMWDLVNAMRTK 126 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~ 126 (480)
..++.|+.+.+..+++.+...
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 334556666655555544443
No 287
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=54.12 E-value=85 Score=25.30 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011648 114 QIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..+..+|+.+...+- .+..-|..++.........++...+|..+
T Consensus 89 ~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 134 (224)
T 1s1e_A 89 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 134 (224)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 344556665543332 55555555555444333333444444444
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.82 E-value=40 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHhh
Q 011648 170 NGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~ 193 (480)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666666554
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.57 E-value=1.1e+02 Score=26.28 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHHH
Q 011648 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI--VSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~ 446 (480)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 356777777788888888888877531111 12233334444444322 3445567777766565444333
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.26 E-value=1.8e+02 Score=28.13 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011648 82 CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 82 ~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
++-..+.+.++.+.....-+..+..+.+.+++......+.. .+.+...-+....+....|+..+|......+=..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 44444444444444444555566666677776666654432 23455555666666667777666665555544333
Q ss_pred CCCCHHHHHHHHHHHHccCCh
Q 011648 162 VTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~g~~ 182 (480)
...+..+..++..+.+.|.+
T Consensus 133 -~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTTCS
T ss_pred -CCCcHHHHHHHHHHHHCCCC
Confidence 33444556666666655543
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.15 E-value=10 Score=31.69 Aligned_cols=28 Identities=0% Similarity=-0.162 Sum_probs=15.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 011648 138 MRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3344556666666666665555544443
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.35 E-value=1e+02 Score=25.23 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011648 312 IGAFCKANKFKNVYRVLKDMNSK--GVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
++.+....++++|..++++..+. +..+ ........+..-.....-.-+..+.+.+.. ..+.......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 55566666777777776655432 1111 111112222222222222222233333321 344444555556666
Q ss_pred hcCCHHHHHHHHHHHH
Q 011648 386 QGGELEKAFKVWKYMK 401 (480)
Q Consensus 386 ~~g~~~~A~~~~~~~~ 401 (480)
+.|+.++|..+|-+..
T Consensus 103 rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNR 118 (235)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHH
Confidence 6666666666665544
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.91 E-value=76 Score=25.55 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.1
Q ss_pred cCCChhHHHHHHHHHHHcC
Q 011648 212 KDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 212 ~~~~~~~a~~~~~~m~~~~ 230 (480)
..|+.+.+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3344444444444443333
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.41 E-value=73 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011648 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555554 55555555555555554
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.07 E-value=1.5e+02 Score=27.70 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHH--HH-HHHHHHHHccCChhhHHHHHHHhhcCCCCC
Q 011648 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNLA--AF-NGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 199 (480)
...++.+++.|...+.+++|..+..+..--.. .++.. .| -.+...+.-.+++.+|.+.+.......+++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 34566677777777777777777766531000 01111 11 123445556677777777776665544433
No 296
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.04 E-value=49 Score=25.29 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=27.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC-CCHHHHHHHHHHHHHcC
Q 011648 89 KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 89 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~li~~~~~~~ 145 (480)
+..|++.+.. -..++..+...+..-.|.++++.+... ++ .+..|....+..+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3334444332 233445555555555566666665554 44 45555555555555554
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.94 E-value=46 Score=28.15 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=9.0
Q ss_pred HHHHhCCChhHHHHHHHH
Q 011648 348 NGLIGRGETDEAYRVFRR 365 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~ 365 (480)
...+..|..+-+.-+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 333455555555555544
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.80 E-value=72 Score=24.77 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=6.9
Q ss_pred HccCChhhHHHHHH
Q 011648 177 CKSKNVRKAQEIFD 190 (480)
Q Consensus 177 ~~~g~~~~a~~~~~ 190 (480)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34455555555444
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=46.40 E-value=1.1e+02 Score=24.44 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=34.1
Q ss_pred hHHHHHHHHh---cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHhHhCCC
Q 011648 202 TYSILLEGWG---KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR-----VDEALGIVKSMDSTVC 266 (480)
Q Consensus 202 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 266 (480)
.+--+|+++. +-.+.+.|+-++-+|++.|-.|.-..-..++-+.-..|. ...|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3333444443 356777777777777777766554444444444444432 2334444444444443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.05 E-value=25 Score=27.65 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHH
Q 011648 429 CVLLEDMIEKGIRPSGETFG--KLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 429 ~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~ 466 (480)
.++.+.+++.|..++..... +.+....+.|+.+-+..+
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 45555556666554432111 123333445655544443
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.67 E-value=94 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011648 308 YNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555555555555555555553
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.64 E-value=34 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=13.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHhh
Q 011648 170 NGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 170 ~~ll~~~~~~g~~~~a~~~~~~~~ 193 (480)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666666654
No 303
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.80 E-value=1.2e+02 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=8.5
Q ss_pred HHHccCChhhHHHHHHH
Q 011648 175 ALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 175 ~~~~~g~~~~a~~~~~~ 191 (480)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555555555544
No 304
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.35 E-value=1.2e+02 Score=24.43 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011648 114 QIMWDLVNAMRTKRMLNVETF--------CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~--------~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+.|+.+|+.+......+...+ ...+..|.+.|.+++|.+++++..+.
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777777765543222221 23445667777777777777777653
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.99 E-value=1.1e+02 Score=23.15 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 011648 392 KAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 444 (480)
++..+|..|..+|+--. ...|......+...|++++|.++|+..++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37777888777765433 455667777777888888888888888877766644
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.85 E-value=1.1e+02 Score=22.83 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455666533 33344555555556666777888887766666677776666666666664
No 307
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=40.20 E-value=1.5e+02 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011648 235 IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
..++.-+...+.+...+-+++..++.+
T Consensus 229 ~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 229 VVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp SBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 345666666666666666666666543
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.18 E-value=1.1e+02 Score=22.66 Aligned_cols=60 Identities=10% Similarity=-0.055 Sum_probs=36.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665432 233444555555566777777777766666666666666666666664
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.10 E-value=1e+02 Score=22.30 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=11.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 011648 345 IILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444555555555555544
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.99 E-value=52 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011648 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
+..+...+..-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333444444445544444444 44444444444444433
No 311
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=38.96 E-value=1.3e+02 Score=22.92 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011648 114 QIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..+..+|+.+...+- .+..-|..++.........+....+|..+
T Consensus 56 ~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~ 101 (183)
T 1s6c_A 56 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101 (183)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 334445554433222 44444444444433333333444444444
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.88 E-value=91 Score=28.21 Aligned_cols=331 Identities=12% Similarity=0.103 Sum_probs=141.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccC
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSK 180 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g 180 (480)
.+...+..|+.+-+..+++.-...+..+.. ..+.+...+..|+.+-+..+++. |..++.. .-...+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHCC
Confidence 344556677777666666531111111111 22345555677777655555543 3332211 1112344555667
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHH
Q 011648 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD---IVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
+.+-+.-+++.-......+..-.+. +...+..|+.+-+..+ .+.+..++ ...+ +.+...+..|+.+-+..+
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLAL----LEKEASQACMTKKGF-TPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 7766555555432211122222222 2333445665544443 34443322 1112 234445566776554444
Q ss_pred HHHhHhCCCCcCHHH--HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011648 258 VKSMDSTVCRPTSFI--YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA---MYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
++ .|..++... -...+...+..|+.+ +++.+.+.|..++.. .++ .+...+..|+.+-+..++
T Consensus 166 l~----~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll---- 232 (437)
T 1n11_A 166 LE----RDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLL---- 232 (437)
T ss_dssp HH----TTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHH----
T ss_pred Hh----CCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH----
Confidence 43 333332110 011233344555554 444455555444321 122 233445667765444444
Q ss_pred hCCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011648 333 SKGVAPNS---RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 333 ~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 409 (480)
+.|..++. ...+. +...+..|..+-...+++.-......+..-.+. +...+..|+.+-+..+++ .|..++.
T Consensus 233 ~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~g~~~~~ 306 (437)
T 1n11_A 233 QYGGSANAESVQGVTP-LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIK----HGVMVDA 306 (437)
T ss_dssp HTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----HTCCTTC
T ss_pred HcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh----CCccCCC
Confidence 44433322 12222 333445666655544443221111111111122 233445667665544443 3332221
Q ss_pred ---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 011648 410 ---HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF--GKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 410 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~ 468 (480)
.-.+.+. ..+..|+.+ +.+.+++.|..++.... .+.+......|..+-+..+++
T Consensus 307 ~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 307 TTRMGYTPLH-VASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CCSSCCCHHH-HHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCHHH-HHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 1122233 234556654 34444555665543221 123334456677776665554
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.47 E-value=1.1e+02 Score=22.37 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=31.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 400 MKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34455554432 223444444444 555677777777666655666665555566655553
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.45 E-value=3.5e+02 Score=27.83 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=56.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------------------
Q 011648 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP------------------ 407 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------------------ 407 (480)
++..|...|..+-|.+ +..-.+.++..--.+.++|...|++++|..+|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcc
Confidence 5566667777765544 3344455655555678888889999999999987542 2211
Q ss_pred -----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 011648 408 -----SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 408 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (480)
...-|..++..+-+.+-++.+.++.+.+++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124566666666777777777777776653
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.38 E-value=42 Score=20.46 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHH-Hhc
Q 011648 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVL-CKA 248 (480)
Q Consensus 216 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~ 248 (480)
.++|.+.|.+|++..-.++..+|...++.. ++-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367777888777554444567777777776 443
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.25 E-value=2.4e+02 Score=25.86 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=29.4
Q ss_pred hcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCC-----HHHHHHHHHHHHHCCC
Q 011648 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR-----IEDAVDTFLEMEKNGI 301 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 301 (480)
+.++.+.|+..+.+|...|..|....-..+..+...-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 345667777777777666655554444444444444442 2334445555555553
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.19 E-value=62 Score=25.96 Aligned_cols=7 Identities=29% Similarity=0.525 Sum_probs=2.9
Q ss_pred HhcCCHH
Q 011648 246 CKAGRVD 252 (480)
Q Consensus 246 ~~~g~~~ 252 (480)
+..|+.+
T Consensus 50 ~~~~~~~ 56 (240)
T 3eu9_A 50 AINNRID 56 (240)
T ss_dssp HHTTCHH
T ss_pred HHhCCHH
Confidence 3444443
No 318
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.17 E-value=49 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
++..+...+..-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444555555555555544 45555444444444444
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.97 E-value=1.3e+02 Score=24.30 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 011648 91 QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 91 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
..++.|+.-....|... +. .+.+.++|..|...++ .-...|......+-..|++.+|..+|+.-++.+-.|-..
T Consensus 111 ~rYknD~RyLklWl~Ya-~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 111 PLYKDDVRYLRIWMQYV-NY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp GGGTTCHHHHHHHHHHH-TT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred ccccCCHHHHHHHHHHH-Hc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34556766555555433 22 3578899999999988 677888899999999999999999999999888777543
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.72 E-value=77 Score=21.60 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=32.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011648 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 186 (480)
+++.+.+.++.+......+-. .......++|.++++.+...| +.+|..++.++...|+..-|.
T Consensus 26 vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 455555555555444433332 001135666777777666654 244555666665555544443
No 321
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.49 E-value=1.4e+02 Score=23.12 Aligned_cols=138 Identities=12% Similarity=-0.006 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011648 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
+...-...+.++.+.+..+... .+..+.. .++...-...+.++.+.++.+....+. .+.. .++..+-...+.+
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~--d~~~~vr~~a~~a 130 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK--DEDWFVRIAAAFA 130 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT--CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHc--CCCHHHHHHHHHH
Confidence 4444444555555555443332 2223332 245555555566666655543322222 2222 3555565666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011648 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
+.+.+..+ +...+..+... ++...-...+.++...|. .++...+..+... ++..+-...+.++.+
T Consensus 131 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 131 LGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 66666543 33344444332 455666666666666654 4555555555542 345444444444444
No 322
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=37.42 E-value=56 Score=20.37 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011648 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (480)
+-+++.+++..-.++++..+++..+.|..+.++|..-++.+++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555544444444
No 323
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.38 E-value=57 Score=26.20 Aligned_cols=14 Identities=7% Similarity=-0.182 Sum_probs=6.6
Q ss_pred HhCCChhHHHHHHH
Q 011648 351 IGRGETDEAYRVFR 364 (480)
Q Consensus 351 ~~~~~~~~a~~~~~ 364 (480)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455554444443
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.24 E-value=2.1e+02 Score=24.62 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 011648 100 YHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 455677777778888877777765
No 325
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.09 E-value=1e+02 Score=21.04 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=38.7
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCchHHHH-HHHHH---hhcCCCCCCHHHHHHHH
Q 011648 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWA---EKQQNYEHSVRAYHSMI 104 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~-~f~~~---~~~~~~~~~~~~~~~li 104 (480)
...+..+++..|+.++..++..++..|...+..|.+ +.+|+ ....+..|+....+.+=
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 457788899999999998888887766544433333 23443 24456677777766653
No 326
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.03 E-value=3.7e+02 Score=27.45 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=22.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011648 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 194 (480)
+.|..++-..+++..... .+..--..++.+++...+.....++++....
T Consensus 738 ~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 344444444444444432 2233334455555555555555555554443
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.93 E-value=70 Score=23.41 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011648 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 112 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
..-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444 44444444444444444
No 328
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=35.79 E-value=1.8e+02 Score=23.84 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHhhCchHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCC--CCHHHH
Q 011648 59 IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ-QNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRM--LNVETF 134 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~--~~~~~~ 134 (480)
..++++.+..+.....-.......+|+..... ..-..+..-+..++..+...+ .-..+..+|..+...+. .+..-|
T Consensus 72 ~~l~~e~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef 151 (256)
T 2jul_A 72 VRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDF 151 (256)
T ss_dssp ----CTHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHH
Confidence 33444555555544333333444444444332 122345555555555443222 23456667777655432 565566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH-ccC-----------ChhhHHHHHHHhhcCCCCChh
Q 011648 135 CIIMRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLLSALC-KSK-----------NVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~-~~g-----------~~~~a~~~~~~~~~~~~~~~~ 201 (480)
..++..+......++...+|..+-..| -..+..-+..++..+. ..| .-+.+..+|..+... .....
T Consensus 152 ~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d-~dG~I 230 (256)
T 2jul_A 152 VVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN-QDGVV 230 (256)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCS-TTCSB
T ss_pred HHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCC-CCCcE
Confidence 666655554444556666676654321 1345555555544432 123 234566677766442 22456
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHH
Q 011648 202 TYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~m 226 (480)
++.-++..+.+...+-++...|+.+
T Consensus 231 s~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 231 TIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHhhccc
Confidence 7888888888888888888877764
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.42 E-value=1.8e+02 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHH
Q 011648 221 EIFREMVDTGCNPDIVTY--GIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 221 ~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~ 258 (480)
.+.+.+.+.|..++.... .+.+...+..|..+.+..++
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 344445666655543211 12333445666666554444
No 330
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.99 E-value=42 Score=19.85 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 011648 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR--EDVLKFLQEKM 470 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 470 (480)
+.++.+++.|+.++ ....++.+.|. .+.|.+++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34555556666543 33445556665 77777777776
No 331
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.82 E-value=1.6e+02 Score=22.82 Aligned_cols=26 Identities=12% Similarity=-0.170 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHH
Q 011648 410 HTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (480)
..++.+...|...|+.+||++.+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 34566667778889999999887654
No 332
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.71 E-value=98 Score=21.15 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCCCCHHHHHH
Q 011648 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETFGK 449 (480)
Q Consensus 392 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~ 449 (480)
.|.++.+++...|+.|+..+..-++..|...+- + +.++.++.. ..|..|+...+..
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 356666777777777777777777776665553 2 333332222 3356666655544
No 333
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=34.10 E-value=1.3e+02 Score=21.44 Aligned_cols=86 Identities=12% Similarity=0.141 Sum_probs=57.9
Q ss_pred hHHHHHHHHhCCCchhHHHHHhhCCCCCCHHHHHHHHHHHhhCch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 011648 34 AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112 (480)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~ 112 (480)
....+..+...-+..+.....++.| ++...+..+-....++.. ...+.++......| ...+++.|+.++.+++.
T Consensus 7 l~~~i~~Iae~m~~~~wK~laR~LG--lse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G---~~aa~~~Li~aLr~~~l 81 (115)
T 3ezq_A 7 LSKYITTIAGVMTLSQVKGFVRKNG--VNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHG---KKEAYDTLIKDLKKANL 81 (115)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHTT--CCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHcC--CCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhC---cccHHHHHHHHHHHccc
Confidence 3444555666667778888888888 566666666666655554 56777765555555 56688999999888877
Q ss_pred hhHHHHHHHHHH
Q 011648 113 YQIMWDLVNAMR 124 (480)
Q Consensus 113 ~~~a~~~~~~~~ 124 (480)
-..|..+-+.+.
T Consensus 82 ~~~Ad~Iq~~l~ 93 (115)
T 3ezq_A 82 CTLAEKIQTIIL 93 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 666666655543
No 334
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=33.80 E-value=1.8e+02 Score=23.30 Aligned_cols=129 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhhCch---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHH
Q 011648 60 RVSPEIVEDVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETF 134 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~---~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 134 (480)
.++...+..++..+...+. .+..+|+.+.....-.-+..-+...+..+.+...-+....+|+.+...+- .+..-+
T Consensus 81 ~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~ 160 (229)
T 3dd4_A 81 VVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEM 160 (229)
T ss_dssp CCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHH
T ss_pred CcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHH
Q ss_pred HHHHHHH------------HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011648 135 CIIMRKY------------ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 135 ~~li~~~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 190 (480)
..++..+ ...-.-+.+..+|..+-..+ ....++.-++..+.+...+.++.+.|+
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~~~~~~~~~D 226 (229)
T 3dd4_A 161 LDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKDENIMRSMQLFE 226 (229)
T ss_dssp HHHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhCHHHHHHHHhcc
No 335
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.73 E-value=1.6e+02 Score=22.52 Aligned_cols=74 Identities=8% Similarity=0.114 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 011648 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 446 (480)
...|+.-....+..--..+ .+..+|..|..+|+--. ...|......+-..|++.+|.++|+..++.+-.|-...
T Consensus 59 YknD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred hccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3445544444333222233 36667888877765533 45566677777788888888888888888777776543
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.56 E-value=2.4e+02 Score=28.96 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCC------------------
Q 011648 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA------------------ 372 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 372 (480)
++..+...|..+-+.++..-+ +.++..--.+..+|...|++++|..+|+++..+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 455566666666554433222 223333344667788889999999999876543211
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCC
Q 011648 373 -----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKG 423 (480)
Q Consensus 373 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 423 (480)
...-|..++..+-+.+-++.+.++-+.+++.--.-|. ..|..++++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124667778888888888888888877754222222 35556666555443
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.54 E-value=1.2e+02 Score=22.58 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=34.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344566655433 223444444444 556677777777776666666665555666666654
No 338
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.42 E-value=1.7e+02 Score=22.86 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011648 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+...-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.++.+.. ..+..+.. .++...-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHH
Confidence 4444444445555555432 2333333332 24555555666666666654333 33333333 245555555666
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011648 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
++...++.+ +...+..+.+ .++..+-...+.++.+.+. .++...+..+... ++..+-...+.++..
T Consensus 135 aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 666665543 3333333332 3555666666666666665 3444444444432 344444444444433
No 339
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.05 E-value=1.8e+02 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011648 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
-.+.+.|+-++-+|++.| .|.-..-..++-+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 456667777777777766 544444444444444433
No 340
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.66 E-value=3.2e+02 Score=25.65 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCCh--hhHH-HHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 011648 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGV-APNS--RTCN-IILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
...+|.+++.|...+.++.|..+..+..---. .++. ..|. .+...+.-.+++.+|.+.+..+....+++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 56678888888888889999888887742100 1111 1111 23345566788888888888877654443
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.84 E-value=1.1e+02 Score=22.76 Aligned_cols=59 Identities=8% Similarity=0.033 Sum_probs=33.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344556665433 223334444444 55677777777766666666665555566666553
No 342
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.54 E-value=4.4e+02 Score=26.92 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=52.1
Q ss_pred HHHHHHHHcCC---HhHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011648 310 ALIGAFCKANK---FKNVYRVLKDMNSKG----VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 310 ~li~~~~~~~~---~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.++...|+.|+ .+.|.+.|+.....+ +.|+. -..+...-.+.|..++-..+++...+ ..+..--..++.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~--~~~~~ek~~ll~ 766 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQ--AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHH
Confidence 35556667665 346677777665432 33432 23333334455666655556666554 233444456777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011648 383 MFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~ 403 (480)
+++...+.....++++.....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCT
T ss_pred HhCCCCCHHHHHHHHHHHhCC
Confidence 777777877777777776543
No 343
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.44 E-value=66 Score=17.40 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011648 447 FGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...-+...+..|+++.+..+-.++..+
T Consensus 13 iEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 444455566667777776666666543
No 344
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.81 E-value=85 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=5.8
Q ss_pred HHcCCHHHHHHHHH
Q 011648 142 ARVQKVEEAVYTFN 155 (480)
Q Consensus 142 ~~~~~~~~a~~~~~ 155 (480)
+..|+.+.+..+++
T Consensus 10 ~~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 10 AARGDVQEVRRLLH 23 (156)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444433
No 345
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.35 E-value=2.6e+02 Score=25.11 Aligned_cols=333 Identities=12% Similarity=0.067 Sum_probs=152.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccC
Q 011648 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSK 180 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g 180 (480)
.+...++.|+.+-+.-+++.-...+..+... .+.+...+..|+.+-+.-++ +.|..++.. .-...+...+..|
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcC
Confidence 4455567788877776665422111122221 23445556778776554444 444443321 1112344556778
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 011648 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~ 258 (480)
+.+....+++.-......+..-++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 125 ~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v---- 195 (437)
T 1n11_A 125 HVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV---- 195 (437)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----
T ss_pred CHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----
Confidence 887777776653322112222222 233445566654 4455556665554321 12234455667776544
Q ss_pred HHhHhCCCCcCHHHH--HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011648 259 KSMDSTVCRPTSFIY--SVLVHTYGVENRIEDAVDTFLEMEKNGILADV---AMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
+.+...|..++...+ ...+...+..|+.+-+. .+.+.|..++. ...+ .+...+..|+.+-+. .+.+
T Consensus 196 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~ 266 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYGGSANAESVQGVT-PLHLAAQEGHAEMVA----LLLS 266 (437)
T ss_dssp HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHHT
T ss_pred HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCC-HHHHHHHCCCHHHHH----HHHh
Confidence 444444433332111 12334445667765444 44455543332 2222 233445667765444 4444
Q ss_pred CCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 011648 334 KGVAPNS---RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM- 409 (480)
Q Consensus 334 ~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 409 (480)
.|..++. ...+.+ ...+..|..+-+..+++.-......+..-.+. +...+..|+.+-+.-+ .+.|..++.
T Consensus 267 ~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~gad~n~~ 340 (437)
T 1n11_A 267 KQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LHVASHYGNIKLVKFL----LQHQADVNAK 340 (437)
T ss_dssp TTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHH----HHTTCCTTCC
T ss_pred cCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHH----HhcCCCCCCC
Confidence 5544332 222233 33445677766555554422111111111222 3344566776644444 444544432
Q ss_pred --HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 011648 410 --HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET--FGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 410 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
.-++.+..+ +..|..+ +.+.+++.|..|+... -.+-+....+.|..+ ..++++..
T Consensus 341 ~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~-~~~~l~~~ 399 (437)
T 1n11_A 341 TKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS-VTDVLKVV 399 (437)
T ss_dssp CTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH-HHHHHHHH
T ss_pred CCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHH-HHHHHHhc
Confidence 122333333 3456543 4455556677665421 112233445556543 33444443
No 346
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.22 E-value=2.7e+02 Score=24.10 Aligned_cols=52 Identities=6% Similarity=0.112 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 011648 389 ELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 440 (480)
+.....++-..+-..++.|.. -+...-+....+.+++..|..+.+++++.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 445556666666665655543 2445556677888999999999999998664
No 347
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.15 E-value=1.7e+02 Score=21.65 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=18.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011648 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 180 (480)
++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333334444445555555544443334333333333444443
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.03 E-value=2.1e+02 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=18.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011648 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246 (480)
Q Consensus 213 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 246 (480)
-.+.+.|+-++-+|++.|-.|.-..-..++-+.-
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4566666666666666665544444344443333
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.97 E-value=2.8e+02 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 011648 240 IMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.++.-|...|+.++|...++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 44555666666666666666554
No 350
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.86 E-value=1e+02 Score=19.21 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011648 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
.++.++..+++..-.++++-.+++..+.| ..+..+|.--.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46777888888888999999999999888 67777776666665543
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.71 E-value=2e+02 Score=27.26 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhH
Q 011648 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 168 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
-..-++..|.+.|-.+.|.++++.+......+...+ ..+..+.++|+++.
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 344455556666666666666666555333334444 44445555555544
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.33 E-value=1.8e+02 Score=21.69 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=28.6
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011648 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 123 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 181 (480)
+...|.....--..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 18 l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34444433333444455555555555666666666555444454444334445555444
No 353
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.17 E-value=1.2e+02 Score=19.56 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=38.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011648 399 YMKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556676665443 34555555543 455677788888777666677777777777777664
No 354
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.09 E-value=1.1e+02 Score=22.50 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011648 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 250 (480)
++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 444444445556666666666665555555555444555555543
No 355
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.98 E-value=78 Score=23.71 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcC
Q 011648 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443 34444444444444433
No 356
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.91 E-value=2.2e+02 Score=22.54 Aligned_cols=217 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcC
Q 011648 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY--GIMVDVLCKAG 249 (480)
Q Consensus 172 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g 249 (480)
.+...+..|+.+-...+++.-..-...+..-++.+..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH-----LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-----HHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q ss_pred CHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHhHHHHH
Q 011648 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV--AMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~ 327 (480)
+.+-+..+++.-...-...+..-.+.+..+..... .++++.+.+.|..++. ..-...+...+..|+.+ +
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~ 159 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----I 159 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----H
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----H
Q ss_pred HHHHHhCCCCCChhhHH--HHHHHHHhCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 328 LKDMNSKGVAPNSRTCN--IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
++.+.+.|..++..... ..+...+..|+.+-+.-+++.-......|..-.+.+ ......|+...+.++.+.+.+.
T Consensus 160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l-~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL-QCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH-HHHHHHHHHHHHHHHHHHhhcc
No 357
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.58 E-value=1.7e+02 Score=22.14 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=28.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011648 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK--GIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 402 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 458 (480)
+.|..++. --..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34554432 2233444455555555666666666554 44455555444445555555
No 358
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.31 E-value=2.1e+02 Score=21.81 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=29.4
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhCCChhHHHHHHHHHHh
Q 011648 316 CKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILN-G-----LIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 368 (480)
.+.|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33477777777777766554344 3344555555 2 1235666666666665554
No 359
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.24 E-value=1.6e+02 Score=23.28 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=8.4
Q ss_pred HHHhcCChhHHHHHHHH
Q 011648 106 SLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~ 122 (480)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555555543
No 360
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.12 E-value=2.1e+02 Score=27.05 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011648 180 KNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 180 g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+........+++..+++. +..--.-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4455566666666665444 3455677889999999999999999988655333 44455 556678999988765
No 361
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.66 E-value=1.5e+02 Score=19.86 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011648 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 181 (480)
.+++.+.+.++.+..-+..+-.. ....++|..+++.+...| ..+|..++.++...+.
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCH
Confidence 44555555555554444444332 345566666666665433 3555555655555554
No 362
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.60 E-value=3.7e+02 Score=24.54 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=18.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011648 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 350 (480)
.++.+.|...+.+|.+.|..|....-..+..+.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456666666666666666555443333333333
No 363
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.37 E-value=2.2e+02 Score=22.54 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHHHccCChhhHHHHHHH
Q 011648 174 SALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 174 ~~~~~~g~~~~a~~~~~~ 191 (480)
...+..|+.+....+++.
T Consensus 8 ~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 344556666666555543
No 364
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.23 E-value=2.5e+02 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 011648 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
..+++.|+-.+.+|++.|-.|....-..++.+.-.-|
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455555555555555554444333344444443333
No 365
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.90 E-value=1.3e+02 Score=21.73 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=16.6
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011648 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
..+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444455555544444444444333344444433
No 366
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.78 E-value=29 Score=28.73 Aligned_cols=21 Identities=0% Similarity=-0.078 Sum_probs=9.0
Q ss_pred cCCChhHHHHHHHHHHHcCCC
Q 011648 212 KDPNLPRAREIFREMVDTGCN 232 (480)
Q Consensus 212 ~~~~~~~a~~~~~~m~~~~~~ 232 (480)
+.|+.+....+++.+.+.|..
T Consensus 14 ~~g~~~~v~~ll~~l~~~~~~ 34 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHKKR 34 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHhcCCC
Confidence 334444444444444444433
No 367
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.35 E-value=3.2e+02 Score=23.33 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=10.3
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 011648 103 MIESLAKIRQYQIMWDLVN 121 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~ 121 (480)
.+...++.|+++.+..+++
T Consensus 28 ~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3334456666665555554
No 368
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.75 E-value=4.2e+02 Score=24.46 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHHhcCCChhHHHHHHH
Q 011648 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
.+.+-|.++- .+.|++--...|..-...+...|++++|.++-...+.+.-.+..|.+.+-..=...|+..-.+.+|.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 4555555443 3445555556666667778888999999999888888777788888777776666777777888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011648 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 225 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
.+.+.|- .+..--.-+++.-...|+.+-..
T Consensus 420 ~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~lle 449 (494)
T 1bpo_A 420 ILLDQGQ-LNKYESLELCRPVLQQGRKQLLE 449 (494)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccCc-cchHHhhHHhHHHHhccHHHHHH
Confidence 8877652 23322223344444444444333
No 369
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.36 E-value=1.6e+02 Score=23.96 Aligned_cols=27 Identities=7% Similarity=-0.131 Sum_probs=15.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011648 138 MRKYARVQKVEEAVYTFNVMQKYGVTQ 164 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~ 164 (480)
+...++.|+.+....+++.+.+.|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344456666666666666655555443
No 370
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.34 E-value=1.5e+02 Score=19.97 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 011648 411 TFSVLINGLCDKGIVSDSCVLLEDMIE-----KGIRPSGETFGKL 450 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 450 (480)
.+......+.+.|++++|++..++... ..+..+..+..+|
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SL 61 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL 61 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 445566778888888888776665531 2345566554433
No 371
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.04 E-value=3.8e+02 Score=23.71 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCC
Q 011648 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK--VEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 165 (480)
.-..++.-|...|+.++|.+.++++.............++......++ .+.+-.++..+...|+-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 345677788888888888888888753211122333333443333332 2344555566665554333
No 372
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.70 E-value=88 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=9.9
Q ss_pred HHHhcCCHHHHHHHHHH
Q 011648 453 LLIKEGREDVLKFLQEK 469 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~ 469 (480)
...+.|..+-+..+++.
T Consensus 250 ~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHc
Confidence 33455666666666654
No 373
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.57 E-value=2.4e+02 Score=21.26 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHhhCc---hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCHHHH
Q 011648 60 RVSPEIVEDVLEKFRNAG---TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETF 134 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~---~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 134 (480)
.++...+..++..+.... .....+|+.+.....-.-+..-+..++.........+....+|+.+-..+ ..+..-+
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~ 114 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEM 114 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 466677777776664321 14556666664433323455555555554444444455666666664332 2444444
Q ss_pred HHHH
Q 011648 135 CIIM 138 (480)
Q Consensus 135 ~~li 138 (480)
..++
T Consensus 115 ~~~~ 118 (183)
T 1s6c_A 115 MDIV 118 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 374
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.36 E-value=2.8e+02 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011648 134 FCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455666666666666666665553
No 375
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.10 E-value=2.8e+02 Score=21.97 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=9.7
Q ss_pred hCCChhHHHHHHHHHHh
Q 011648 352 GRGETDEAYRVFRRMIK 368 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~ 368 (480)
+..+.+.|+-++.+|++
T Consensus 26 RGSDpDAAly~LaRml~ 42 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVE 42 (204)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 44555556555555555
No 376
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.11 E-value=2.7e+02 Score=21.43 Aligned_cols=51 Identities=6% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011648 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+..++..+.+.|...|...-...+....+.|.+. ...+-.++..+|+.+
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 455667778888887766666666666666554433 355667777777753
No 377
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.11 E-value=70 Score=19.46 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=8.4
Q ss_pred ChhHHHHHHHHHHHcC
Q 011648 215 NLPRAREIFREMVDTG 230 (480)
Q Consensus 215 ~~~~a~~~~~~m~~~~ 230 (480)
+++.|...|.++...|
T Consensus 35 d~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKG 50 (59)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4555555555555433
No 378
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.04 E-value=2.6e+02 Score=21.22 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=7.0
Q ss_pred CChHHHHHHHHHHH
Q 011648 423 GIVSDSCVLLEDMI 436 (480)
Q Consensus 423 g~~~~a~~~~~~~~ 436 (480)
|++-+|.++++..-
T Consensus 46 g~yfeaHEvLEe~W 59 (161)
T 2ijq_A 46 GEFHESHDCFEDEW 59 (161)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHH
Confidence 45555555555444
No 379
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.61 E-value=1.8e+02 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=14.0
Q ss_pred HHHHHccCChhhHHHHHHHhhc
Q 011648 173 LSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 173 l~~~~~~g~~~~a~~~~~~~~~ 194 (480)
+..|.+.|.+++|.++|++.-.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3456677777777777777544
No 380
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.52 E-value=3.2e+02 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=9.2
Q ss_pred hCCChhHHHHHHHHHHh
Q 011648 352 GRGETDEAYRVFRRMIK 368 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~ 368 (480)
+..+.+.|+-++.+|++
T Consensus 19 RGSDpDAAly~LaRMl~ 35 (201)
T 3bge_A 19 RGSAPDAALYWYARILT 35 (201)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 34555555555555555
No 381
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.13 E-value=3.9e+02 Score=23.06 Aligned_cols=16 Identities=0% Similarity=-0.130 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHHH
Q 011648 384 FCQGGELEKAFKVWKY 399 (480)
Q Consensus 384 ~~~~g~~~~A~~~~~~ 399 (480)
.+..|+.+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455666666555554
No 382
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.06 E-value=3.7e+02 Score=22.12 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhhCch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCC--CCHHHHH
Q 011648 60 RVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRM--LNVETFC 135 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~--~~~~~~~ 135 (480)
..++..-...+..+...+. .+...+..+... ++...-...+.++++.| .......++..+..... ++...-.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcC----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Q ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHH
Q 011648 136 IIMRKYARVQK-----VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 136 ~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
..+.++...+. ...+...+..+.. .++..+-...+.++...|+.+....+.+.+. .++..+-...+.++
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKATIPLLINLLK---DPNGDVRNWAAFAI 183 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---CCHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Q ss_pred hcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcCHHHHHHHHHHhhccCCHHHH
Q 011648 211 GKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 211 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
...+ ....+...+..+... ++...-...+.++.+.|+......+...+.... .-...+.++.+.|+ +.+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~------vr~~a~~aL~~i~~-~~~ 253 (280)
T 1oyz_A 184 NINKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT------VYDDIIEAAGELGD-KTL 253 (280)
T ss_dssp HHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS------CCHHHHHHHHHHCC-GGG
T ss_pred HhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc------HHHHHHHHHHhcCc-hhh
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011648 290 VDTFLEMEKNGILADVAMYNALIGAF 315 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~ 315 (480)
...+..+.+. .++.......+..+
T Consensus 254 ~~~L~~~l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 254 LPVLDTMLYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTT--SSCCHHHHHHHHHH
T ss_pred hHHHHHHHhc--CCCcHHHHHHHHHh
No 383
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.05 E-value=3.5e+02 Score=21.81 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhcCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011648 356 TDEAYRVFRRMIKLCEADADT--------YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (480)
++.|+.+|+.+.+..+.+... -...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 455666666665533222211 123345566777777777777776654
Done!