BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011649
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 127/368 (34%), Gaps = 60/368 (16%)
Query: 145 VSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPN-- 202
SL+LD + W+ CK + ++IPC+S TC + + P
Sbjct: 24 ASLVLDVAGPLVWSTCK----------------GGQPPAEIPCSSPTCLLANAYPAPGCP 67
Query: 203 ----GQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY--PFLLGCTDN 256
G DK Y V G+ G + R +G+ ++ L C +
Sbjct: 68 APSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127
Query: 257 N--TGDQNGASGIMGLDRG----PVSIISKTNIS-YFFYCLHSPYGSTGYITFGKPDTVN 309
G++G+ GL P + S ++ F CL P G G FG
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCL--PTGGPGVAIFGGGPVPW 185
Query: 310 KKFVK---YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFP 366
+F + YTP+VT S ++I+ I VG R+P+ + +
Sbjct: 186 PQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLR 244
Query: 367 APVYSALRSAFXXXXXXXXX-------XXXIEDLFDTCYD-------LSAYKTVVVPKIT 412
VY L AF F CYD L Y VP +
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGY---AVPNVQ 301
Query: 413 IHFLGGVDLELDVRGTLVVESVRQVCLGFALLPS------DPNSILLGNVQQRGYEVHYD 466
+ GG D + + ++V C+ F + +++LG Q + + +D
Sbjct: 302 LGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFD 361
Query: 467 VAGRRLGF 474
+ +RLGF
Sbjct: 362 MEKKRLGF 369
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 129/368 (35%), Gaps = 60/368 (16%)
Query: 145 VSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPN-- 202
SL+LD + W+ C + ++IPC+S TC + + P
Sbjct: 24 ASLVLDVAGPLVWSTCD----------------GGQPPAEIPCSSPTCLLANAYPAPGCP 67
Query: 203 ----GQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY--PFLLGCTDN 256
G DK Y V G+ G + R +G+ ++ L C +
Sbjct: 68 APSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127
Query: 257 N--TGDQNGASGIMGLDRG----PVSIISKTNIS-YFFYCLHSPYGSTGYITFGKPDTVN 309
G++G+ GL P + S ++ F CL P G G FG
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCL--PTGGPGVAIFGGGPVPW 185
Query: 310 KKFVK---YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFP 366
+F + YTP+VT S ++I+ I VG R+P+ + +
Sbjct: 186 PQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLR 244
Query: 367 APVYSALRSAFXXXXXXXXX-----XXXIEDL--FDTCYD-------LSAYKTVVVPKIT 412
VY L AF +E + F CYD L Y VP +
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGY---AVPNVQ 301
Query: 413 IHFLGGVDLELDVRGTLVVESVRQVCLGFALLPS------DPNSILLGNVQQRGYEVHYD 466
+ GG D + + ++V C+ F + +++LG Q + + +D
Sbjct: 302 LGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFD 361
Query: 467 VAGRRLGF 474
+ +RLGF
Sbjct: 362 MEKKRLGF 369
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 144/390 (36%), Gaps = 90/390 (23%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTT 191
YY+ + IG P Q + +L+DTGS P + D +FD +S T+
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTERSSTYR-------- 62
Query: 192 CKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQE-------VNGNGYF 244
SK + Y GS TGF D +TI + VN F
Sbjct: 63 -----------------SKGFDVTVKYTQGS-WTGFVGEDLVTIPKGFNTSFLVNIATIF 104
Query: 245 ARYPFLLGCTDNNTGDQNGASGIMGLDRGPV------------SIISKTNISYFFYCLHS 292
F L N GI+GL + S++++ NI F
Sbjct: 105 ESENFFLPGIKWN--------GILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMC 156
Query: 293 ----PYGSTG-----YITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLP 343
P +G + G ++ K + YTPI ++ +Y I + + +GG+ L
Sbjct: 157 GAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPI----KEEWYYQIEILKLEIGGQSLN 212
Query: 344 LKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDLFDT-----CY 398
L + +DSGT + R P V+ A+ A D F T C+
Sbjct: 213 LDCREYNADKAIVDSGTTLLRLPQKVFDAVVEA----VARASLIPEFSDGFWTGSQLACW 268
Query: 399 DLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLG---------FALLPSDPN 449
S PKI+I +L + R T++ + Q +G F + PS N
Sbjct: 269 TNSETPWSYFPKISI-YLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPST-N 326
Query: 450 SILLGNVQQRGYEVHYDVAGRRLGFGPGNC 479
++++G G+ V +D A +R+GF C
Sbjct: 327 ALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 146/362 (40%), Gaps = 41/362 (11%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH---CSQQRDPFFDPSKSKTFSKIP 186
+EY I V+IG P Q LL DTGS TW K C C R FFDPS S TF
Sbjct: 18 EEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFKATN 75
Query: 187 CNSTTCKILLEWFPPNG---QDKCSSKECPYD---IAYVDG-SGETGFWATDRMTIQEVN 239
N I NG +D + + +AYVD G T ++ ++
Sbjct: 76 YN---LNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTA----EQSPNADIF 128
Query: 240 GNGYF-ARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGS-T 297
+G F A YP DN + S + V++ + IS + ++ S T
Sbjct: 129 LDGLFGAAYP------DNTAMEAEYGSTYNTVH---VNLYKQGLISSPLFSVYMNTNSGT 179
Query: 298 GYITFGK-PDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTK-LSTE 355
G + FG +T+ + YT +++ F+ +TGI+V G A F++ +
Sbjct: 180 GEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGS----AAVRFSRPQAFT 235
Query: 356 IDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDLFDTCYDLSAYKTVVVPKITIHF 415
ID+GT P+ S + A + Y S +V + +
Sbjct: 236 IDTGTNFFIMPSSAASKIVKAALPDATETQQGWVVP---CASYQNSKSTISIVMQKSGSS 292
Query: 416 LGGVDLELDVRGTLV-VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGF 474
+++ + V L+ V+ + C+ F +LP N ++GN+ R + YD R+GF
Sbjct: 293 SDTIEISVPVSKMLLPVDQSNETCM-FIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGF 351
Query: 475 GP 476
P
Sbjct: 352 AP 353
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH---CSQQRDPFFDPSKSKTFSKIP 186
+EY I V+IG P Q LL DTGS TW K C + C +R FFDPS S TF +
Sbjct: 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKETD 75
Query: 187 CN 188
N
Sbjct: 76 YN 77
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 429 LVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476
L V+ + C+ F +LP N ++GN+ R + YD R+GF P
Sbjct: 307 LPVDKSGETCM-FIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 100/262 (38%), Gaps = 57/262 (21%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITW-----TQCKPCIHCSQQRDPFFDPSKSKTFSKI 185
Y V++G KQ ++++DTGS W QC + C + F PS S ++ +
Sbjct: 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL 70
Query: 186 PCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGY-- 243
+ I Y DGS G W D +TI V+ G
Sbjct: 71 GA-------------------------AFTIRYGDGSTSQGTWGKDTVTINGVSITGQQI 105
Query: 244 -------FARYPFLLGCTDNNTG-DQNGASGIMGLDRGPVSIISKTNI---SYFFYCLHS 292
+ +G T N D +G D PV++ + I +Y Y L+S
Sbjct: 106 ADVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLY-LNS 164
Query: 293 PYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT-K 351
P TG I FG D KY+ + + + +T++ SV LK S F+
Sbjct: 165 PSAETGTIIFGGVDN-----AKYSGKLVAEQVTSSQALTISLASVN-----LKGSSFSFG 214
Query: 352 LSTEIDSGTIITRFPAPVYSAL 373
+DSGT +T FP+ + L
Sbjct: 215 DGALLDSGTTLTYFPSDFAAQL 236
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 132/370 (35%), Gaps = 64/370 (17%)
Query: 145 VSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQ 204
SL+LD + W+ C+ ++ ++I C+S TC +L +P G
Sbjct: 26 ASLVLDVAGLLVWSTCE----------------GGQSPAEIACSSPTC-LLANAYPAPG- 67
Query: 205 DKCSSKECPYD------IAY----VDGSGETGFWATDRMTIQEVNGNGYFARYPF--LLG 252
C + C D AY V G+ G R +GN + L
Sbjct: 68 --CPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAA 125
Query: 253 CTDNN--TGDQNGASGIMGLDRGPVSIISKTNISY-----FFYCLHSPYGSTGYITFGKP 305
C + G++G+ GL +++ S+ + F CL P G G FG
Sbjct: 126 CAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCL--PTGGPGVAIFGGG 183
Query: 306 DTVNKKFVK---YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTII 362
+F + YTP+V S ++I+ I V R+P+ + +
Sbjct: 184 PLPWPQFTQSMDYTPLVAK-GGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPY 242
Query: 363 TRFPAPVYSALRSAFXXXXXXXXX-----XXXIEDL--FDTCYDLSAYKT----VVVPKI 411
VY L AF ++ + F+ CYD VP +
Sbjct: 243 VLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNV 302
Query: 412 TIHFLGGVDLELDVRGTLVVESVRQVCLGFALLP-------SDPNSILLGNVQQRGYEVH 464
+ GG D + + ++V C+ F + S P +++LG Q + +
Sbjct: 303 LLELDGGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAP-AVILGGAQMEDFVLD 361
Query: 465 YDVAGRRLGF 474
+D+ +RLGF
Sbjct: 362 FDMEKKRLGF 371
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 138/378 (36%), Gaps = 60/378 (15%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSG--ITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 189
YY+ + +G P Q +++L+DTGS P +H QR S T+ +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQR------QLSSTYRDLRKGV 70
Query: 190 TTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPF 249
+W G D S P + + T +D+ IQ N G
Sbjct: 71 YVPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAIT---ESDKFFIQGSNWEG------- 120
Query: 250 LLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFF--------------YCLHSPYG 295
+LG + + L+ S++ +T++ F L S G
Sbjct: 121 ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGG 175
Query: 296 STGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE 355
S I G ++ + YTPI + +Y + + + + G+ L + + +
Sbjct: 176 SM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSI 229
Query: 356 IDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKIT 412
+DSGT R P V+ A + E L C+ + P I+
Sbjct: 230 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVIS 287
Query: 413 IHFLGGVDLELDVRGTLV----------VESVRQVCLGFALLPSDPNSILLGNVQQRGYE 462
++ +G V + R T++ V + + C FA+ S ++ +G V G+
Sbjct: 288 LYLMGEVT-QQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFY 345
Query: 463 VHYDVAGRRLGFGPGNCN 480
V +D A +R+GF C+
Sbjct: 346 VVFDRARKRIGFAVSACH 363
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 190 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 245
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 246 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 302
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 303 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 360
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 182 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 237
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 238 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 294
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 295 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 352
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 191 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 246
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 247 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 303
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 361
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 206 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
++ E L C+ + P I+++ +G V + R T++
Sbjct: 262 ASIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 196 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 251
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 252 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 191 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 246
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 247 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 303
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 361
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 193 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 248
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 249 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 305
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 363
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 196 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 251
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 252 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 195 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 250
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 251 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 307
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 308 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 365
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 194 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 249
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 250 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 196 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 251
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 252 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 197 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 252
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 253 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 309
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 310 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 367
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 194 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 249
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 250 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 199 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 254
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 255 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 311
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 369
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 194 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 249
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 250 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 199 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 254
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 255 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 311
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 369
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 194 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 249
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 250 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 208 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 263
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 264 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 320
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 321 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 378
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 211 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 266
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 267 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 323
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 381
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 209 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 265 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 209 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 265 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 209 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 265 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 207 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 262
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 263 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 319
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 320 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 377
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 206 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 262 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 211 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 266
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 267 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 323
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 381
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 213 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 268
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 269 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 325
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 326 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 383
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 194 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 249
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 250 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 206 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 262 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 206 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 262 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 230 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 285
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 286 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 342
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 400
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 206 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 262 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 230 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 285
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 286 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 342
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 400
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 216 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 271
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 272 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 328
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 329 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 386
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSCGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 252 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 307
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 308 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 364
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 365 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 422
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 253 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 308
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 309 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 365
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 423
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 253 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 308
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 309 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 365
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 423
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 100/264 (37%), Gaps = 57/264 (21%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQ---RDPFFDPSKSKTFSKIPCN 188
Y + +G Q +++++DTGS W P ++ Q D D K K
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNVDCQVTYSDQTADFCKQKG------- 63
Query: 189 STTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYP 248
+ P+G P+ I Y DGS G D + G G +
Sbjct: 64 ---------TYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTV------GFGGVSIKN 108
Query: 249 FLLGCTDNNTGDQNGASGIMGL-----------DRGPVSIISKTNISYFFYCLH--SPYG 295
+L D+ + DQ GI+G+ D PV++ + I+ Y L+ SP
Sbjct: 109 QVLADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDA 164
Query: 296 STGYITFGKPDTVNKKFVKYT-PIVTTPEQSE-FYHITLTGISVGGERLPLKASYFTKLS 353
+TG I FG D KY+ ++ P S+ I+L + V G+ + +
Sbjct: 165 ATGQIIFGGVDN-----AKYSGSLIALPVTSDRELRISLGSVEVSGKTINTD-----NVD 214
Query: 354 TEIDSGTIITRFPAPVYSALRSAF 377
+DSGT IT + + AF
Sbjct: 215 VLLDSGTTITYLQQDLADQIIKAF 238
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSGT R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S + +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGT-CMGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 100/264 (37%), Gaps = 57/264 (21%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQ---RDPFFDPSKSKTFSKIPCN 188
Y + +G Q +++++DTGS W P ++ Q D D K K
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNIDCQVTYSDQTADFCKQKG------- 63
Query: 189 STTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYP 248
+ P+G P+ I Y DGS G D + G G +
Sbjct: 64 ---------TYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTV------GFGGVSIKN 108
Query: 249 FLLGCTDNNTGDQNGASGIMGL-----------DRGPVSIISKTNISYFFYCLH--SPYG 295
+L D+ + DQ GI+G+ D PV++ + I+ Y L+ SP
Sbjct: 109 QVLADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDS 164
Query: 296 STGYITFGKPDTVNKKFVKYT-PIVTTPEQSE-FYHITLTGISVGGERLPLKASYFTKLS 353
+TG I FG D KY+ ++ P S+ I+L + V G+ + +
Sbjct: 165 ATGQIIFGGVDN-----AKYSGSLIALPVTSDRELRISLGSVEVSGKTINTD-----NVD 214
Query: 354 TEIDSGTIITRFPAPVYSALRSAF 377
+DSGT IT + + AF
Sbjct: 215 VLLDSGTTITYLQQDLADQIIKAF 238
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 315 YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALR 374
YTPI + +Y + + + + G+ L + + + +DSG R P V+ A
Sbjct: 210 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAV 265
Query: 375 SAFXXXXXXXXXXXXI---EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV- 430
+ E L C+ + P I+++ +G V + R T++
Sbjct: 266 KSIKAASSTEKFPDGFWLGEQL--VCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 431 ---------VESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
V + + C FA+ S ++ +G V G+ V +D A +R+GF C+
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 124/328 (37%), Gaps = 60/328 (18%)
Query: 187 CNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGN--GYF 244
CN+ TC + FP N V + G A D ++++ +G+ G
Sbjct: 88 CNNNTCGV----FPENP---------------VINTATGGEVAEDVVSVESTDGSSSGRV 128
Query: 245 ARYP-FLLGCTDNNTGDQNGASGIMG---LDRGPVSIISKTNISY-----FFYCLHSPYG 295
P F+ C + QN ASG++G L R +++ S+ ++ F CL
Sbjct: 129 VTVPRFIFSCAPTSL-LQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTS 187
Query: 296 STGYITFGK-PDT------VNKKFVKYTPIVTTP----------EQSEFYHITLTGISVG 338
S I FG P T V+ K + YTP++T P E S Y I + I +
Sbjct: 188 SNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKIN 247
Query: 339 GERLPLKASYFTKLS-----TEIDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDL 393
+ + L S + S T+I + T +Y A+ AF
Sbjct: 248 SKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVA 307
Query: 394 -FDTCYD----LSAYKTVVVPKITIHFLG-GVDLELDVRGTLVVESVRQVCLGFALLPSD 447
F C+ LS VP I + V + ++V + VCLG S+
Sbjct: 308 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSN 367
Query: 448 -PNSILLGNVQQRGYEVHYDVAGRRLGF 474
SI++G Q V +D+A R+GF
Sbjct: 368 LRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 124/328 (37%), Gaps = 60/328 (18%)
Query: 187 CNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGN--GYF 244
CN+ TC + FP N V + G A D ++++ +G+ G
Sbjct: 88 CNNNTCGV----FPENP---------------VINTATGGEVAEDVVSVESTDGSSSGRV 128
Query: 245 ARYP-FLLGCTDNNTGDQNGASGIMG---LDRGPVSIISKTNISY-----FFYCLHSPYG 295
P F+ C + QN ASG++G L R +++ S+ ++ F CL
Sbjct: 129 VTVPRFIFSCAPTSL-LQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTS 187
Query: 296 STGYITFGK-PDT------VNKKFVKYTPIVTTP----------EQSEFYHITLTGISVG 338
S I FG P T V+ K + YTP++T P E S Y I + I +
Sbjct: 188 SNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKIN 247
Query: 339 GERLPLKASYFTKLS-----TEIDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDL 393
+ + L S + S T+I + T +Y A+ AF
Sbjct: 248 SKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVA 307
Query: 394 -FDTCYD----LSAYKTVVVPKITIHFLG-GVDLELDVRGTLVVESVRQVCLGFALLPSD 447
F C+ LS VP I + V + ++V + VCLG S+
Sbjct: 308 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSN 367
Query: 448 -PNSILLGNVQQRGYEVHYDVAGRRLGF 474
SI++G Q V +D+A R+GF
Sbjct: 368 LRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTF 182
EYY V IG P + +L DTGS W C +C R +DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG-SRQTKYDPNQSSTY 66
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 104/268 (38%), Gaps = 68/268 (25%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQ---RDPFFDPSKSKTFSKIPCN 188
Y+ ++IG P Q +L DTGS W P ++C Q F+PS+S T+S
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWV---PSVYCQSQACTSHSRFNPSESSTYST---- 66
Query: 189 STTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVN-GNGYFARY 247
NGQ + + Y GS TGF+ D +T+Q + N F
Sbjct: 67 -------------NGQT--------FSLQYGSGS-LTGFFGYDTLTVQSIQVPNQEF--- 101
Query: 248 PFLLGCTDNNTGDQ---NGASGIMGLD-------------RGPVSIISKTNISYFFYCLH 291
G ++N G GIMGL +G V + T+ + Y +
Sbjct: 102 ----GLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSN 157
Query: 292 SPYGSTGYITFGKPD-TVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT 350
S G + FG D ++ + + P+ Q ++ I + +GG +AS +
Sbjct: 158 QQGSSGGAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGG-----QASGWC 208
Query: 351 KLSTE--IDSGTIITRFPAPVYSALRSA 376
+ +D+GT + P SAL A
Sbjct: 209 SEGCQAIVDTGTSLLTVPQQYMSALLQA 236
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
EY+ ++IG P Q +++ DTGS W C + + F PS+S T+S+
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ 77
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTF 182
EYY V IG P + +L DTGS W C +C + +DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK-YDPNQSSTY 66
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 95/256 (37%), Gaps = 51/256 (19%)
Query: 136 VAIGKPKQYVSLLLDTGSGITWT-QCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKI 194
+ +G KQ +++++DTGS W + Q +DP F ++
Sbjct: 18 ITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGT-------------- 63
Query: 195 LLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCT 254
+ P+ + P+ I Y DG+ G W D + G G +
Sbjct: 64 ----YSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTI------GFGGISITKQQFADV 113
Query: 255 DNNTGDQNGASGIMGL-----------DRGPVSIISKTNISYFFYCLH--SPYGSTGYIT 301
+ + DQ GI+G+ D PV++ ++ IS Y L+ S ++G I
Sbjct: 114 TSTSVDQ----GILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQII 169
Query: 302 FGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTI 361
FG D N K+ + +E I L + V G+ + +DSGT
Sbjct: 170 FGGVD--NAKYSGTLIALPVTSDNEL-RIHLNTVKVAGQSINADVDVL------LDSGTT 220
Query: 362 ITRFPAPVYSALRSAF 377
IT V + SAF
Sbjct: 221 ITYLQQGVADQVISAF 236
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTF 182
A EYY V++IG P + ++ DTGS W C + F P +S T+
Sbjct: 10 ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 62/267 (23%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK-----I 185
Y + IG KQ ++++DTGS W + C + R P +S F K
Sbjct: 13 SYAADITIGSNKQKFNVIVDTGSSDLWVP-DASVTCDKPR-----PGQSADFCKGKGIYT 66
Query: 186 PCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFA 245
P +STT + L P+ I Y DGS G D + G
Sbjct: 67 PKSSTTSQNL---------------GTPFYIGYGDGSSSQGTLYKDTVGF----GGASIT 107
Query: 246 RYPFLLGCTDNNTGDQNGASGIMGL-----------DRGPVSIISKTNISYFFYCLH--S 292
+ F + + GI+G+ D PV++ ++ I+ Y L+ S
Sbjct: 108 KQVFA------DITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS 161
Query: 293 PYGSTGYITFGKPDTVNKKFVKYT-PIVTTPEQSE-FYHITLTGISVGGERLPLKASYFT 350
P +TG I FG D KY+ ++ P S+ ITL + G+ +
Sbjct: 162 PNAATGQIIFGGVDK-----AKYSGSLIAVPVTSDRELRITLNSLKAVGKNIN------G 210
Query: 351 KLSTEIDSGTIITRFPAPVYSALRSAF 377
+ +DSGT IT V + AF
Sbjct: 211 NIDVLLDSGTTITYLQQDVAQDIIDAF 237
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 127 VAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
VA YY IG KQ + + DTGS W C + +D +KSKT+ K
Sbjct: 18 VANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEK 75
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHC------SQQRDPFFDPSKSKTFSK 184
+Y+ + +G P Q ++L DTGS W P I+C + QR FDP KS TF
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQR---FDPRKSSTFQN 68
Query: 185 I 185
+
Sbjct: 69 L 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHC------SQQRDPFFDPSKSKTFSK 184
+Y+ + +G P Q ++L DTGS W P I+C + QR FDP KS TF
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQR---FDPRKSSTFQN 68
Query: 185 I 185
+
Sbjct: 69 L 69
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQ---QRDPFFDPSKSKTFSKI 185
+Y+ + IG P Q +++ DTGS W P I+C + FDP KS TF +
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWV---PSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQR-DPFFDPSKSKTFSK 184
Y+ + IG P Q +++ DTGS + W CI+ R ++ S S T+ +
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKE 68
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 127 VAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTFSK 184
VA +Y +G Q L+ DTGS W K C I CS + +D SKSK++ K
Sbjct: 11 VANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH--LYDSSKSKSYEK 68
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 90/257 (35%), Gaps = 51/257 (19%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 189
D Y V IG P Q ++L DTGS W + PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSK----------S 64
Query: 190 TTCKIL--LEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY 247
TT K+L W G SS + D V G V G +
Sbjct: 65 TTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGG--------------LTVTGQAVESAK 110
Query: 248 PFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFF----YCLHSP-------YGS 296
T+++T D G++GL ++ +S T FF L SP Y +
Sbjct: 111 KVSSSFTEDSTID-----GLLGLAFSTLNTVSPTQXKTFFDNAKASLDSPVFTADLGYHA 165
Query: 297 TGYITFGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE 355
G FG DT + YT + T + F+ T TG +VG T +
Sbjct: 166 PGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS-----TSIDGI 217
Query: 356 IDSGTIITRFPAPVYSA 372
D+GT + PA V SA
Sbjct: 218 ADTGTTLLYLPATVVSA 234
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQ---QRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W P ++CS F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQ---QRDPFFDPSKSKTF 182
EY+ + IG P Q +++ DTGS W P ++CS F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 90/257 (35%), Gaps = 51/257 (19%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 189
D Y V IG P Q ++L DTGS W + PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSK----------S 64
Query: 190 TTCKIL--LEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY 247
TT K+L W G SS + D V G V G +
Sbjct: 65 TTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGG--------------LTVTGQAVESAK 110
Query: 248 PFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFF----YCLHSP-------YGS 296
T+++T D G++GL ++ +S T FF L SP Y +
Sbjct: 111 KVSSSFTEDSTID-----GLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHA 165
Query: 297 TGYITFGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE 355
G FG DT + YT + T + F+ T TG +VG T +
Sbjct: 166 PGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS-----TSIDGI 217
Query: 356 IDSGTIITRFPAPVYSA 372
D+GT + PA V SA
Sbjct: 218 ADTGTTLLYLPATVVSA 234
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 127 VAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
VA +Y +G Q L+ DTGS W K C +D SKSK++ K
Sbjct: 13 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK 70
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 67 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 119
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 127 VAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
VA +Y +G Q L+ DTGS W K C +D SKSK++ K
Sbjct: 59 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK 116
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 140 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 192
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 92/257 (35%), Gaps = 52/257 (20%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 189
D Y V IG P Q ++L DTGS W S+ + PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEVXQTIYTPSK----------S 63
Query: 190 TTCKIL--LEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY 247
TT K+L W G SS + D V G V G +
Sbjct: 64 TTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGG--------------LTVTGQAVESAK 109
Query: 248 PFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFF----YCLHSP-------YGS 296
T+++T D G++GL ++ +S T FF L SP Y +
Sbjct: 110 KVSSSFTEDSTID-----GLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHA 164
Query: 297 TGYITFGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE 355
G FG DT + YT + T + F+ T TG +VG T +
Sbjct: 165 PGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS-----TSIDGI 216
Query: 356 IDSGTIITRFPAPVYSA 372
D+GT + PA V SA
Sbjct: 217 ADTGTTLLYLPATVVSA 233
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 92/257 (35%), Gaps = 52/257 (20%)
Query: 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 189
D Y V IG P Q ++L DTGS W S+ + PSK S
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEVXQTIYTPSK----------S 63
Query: 190 TTCKIL--LEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY 247
TT K+L W G SS + D V G V G +
Sbjct: 64 TTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGG--------------LTVTGQAVESAK 109
Query: 248 PFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFF----YCLHSP-------YGS 296
T+++T D G++GL ++ +S T FF L SP Y +
Sbjct: 110 KVSSSFTEDSTID-----GLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHA 164
Query: 297 TGYITFGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE 355
G FG DT + YT + T + F+ T TG +VG T +
Sbjct: 165 PGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGTFKS-----TSIDGI 216
Query: 356 IDSGTIITRFPAPVYSA 372
D+GT + PA V SA
Sbjct: 217 ADTGTTLLYLPATVVSA 233
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSK 184
+Y +G +Q + +LDTGS W C +D SKS+T+ K
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 80 RNTPSLEEILRR---DQQRLHLKNSRRLQKAIPDNXXXXXXXXXXXXXGIVAADEYYIVV 136
+ PS+ E L+ D RL + S+ +++ N +YY +
Sbjct: 14 KRMPSIRESLKERGVDMARLGPEWSQPMKRLTLGNTTSSVILTNYMDT------QYYGEI 67
Query: 137 AIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 68 GIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 115
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC--IHCSQQRDPFFDPSKSKTF 182
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 175 DPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMT 234
D SK + + P +++ + P G D P + Y++ G TG D
Sbjct: 254 DGSKEQGVT-FPSGDVQEQLIRSLYAPAGPD-------PESLEYIEAHG-TGTKVGDP-- 302
Query: 235 IQEVNG--NGYFA--RYPFLLGCTDNNTGDQNGASGIMGLDRGPVSI---ISKTNISYFF 287
QE+NG N A R P L+G T +N G ASG+ L + +S+ + N+ Y
Sbjct: 303 -QELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHY-- 359
Query: 288 YCLHSPYGSTGYITFGKPDTVNK 310
H+P + G+ V++
Sbjct: 360 ---HTPNPEIPALQDGRLQVVDR 379
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHC 166
+YY + IG P Q +++ DTGS W P IHC
Sbjct: 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWV---PSIHC 46
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITW 157
+Y + V +G P SLL+DTGS TW
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTW 39
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC 163
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC 163
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPC 163
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 40/223 (17%)
Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNST 190
+YY + IG P Q ++ DTGS W C S+ + +S
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC---------------SRLYLACGIHSL 60
Query: 191 TCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGET-GFWATDRMTIQEVNGNGYFARY-- 247
+ NG D + I Y GSG GF + D +T+ + F
Sbjct: 61 YESSDSSSYMENGDD--------FTIHY--GSGRVKGFLSQDSVTVGGITVTQTFGEVTQ 110
Query: 248 ----PFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNIS---YFFYCLHSPYGSTGYI 300
PF+L D G A + G+ I+S+ + + Y P+ G +
Sbjct: 111 LPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEV 170
Query: 301 TFGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERL 342
G D + + Y + +++ + IT+ G+SVG L
Sbjct: 171 VLGGSDPQHYQGDFHYVSL----SKTDSWQITMKGVSVGSSTL 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,565,738
Number of Sequences: 62578
Number of extensions: 614798
Number of successful extensions: 1175
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 163
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)