Query 011649
Match_columns 480
No_of_seqs 344 out of 1738
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.6E-76 3.4E-81 617.0 40.7 396 57-480 22-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.7E-59 3.7E-64 485.9 37.6 336 128-480 43-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 7.5E-58 1.6E-62 456.8 31.7 293 131-479 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 6.4E-58 1.4E-62 467.3 31.6 326 138-477 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.6E-55 7.8E-60 442.6 31.1 298 130-480 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 4.7E-54 1E-58 432.9 29.3 292 128-476 7-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 4.2E-53 9.1E-58 427.4 30.7 295 128-476 3-325 (325)
8 cd05477 gastricsin Gastricsins 100.0 1.4E-52 3.1E-57 422.3 30.5 294 129-477 1-318 (318)
9 cd05486 Cathespin_E Cathepsin 100.0 1.1E-52 2.3E-57 422.8 28.9 290 132-476 1-316 (316)
10 PTZ00165 aspartyl protease; Pr 100.0 5E-52 1.1E-56 435.6 32.8 298 128-480 117-449 (482)
11 cd05488 Proteinase_A_fungi Fun 100.0 5.3E-52 1.1E-56 418.5 29.5 292 128-476 7-320 (320)
12 cd05473 beta_secretase_like Be 100.0 7.5E-52 1.6E-56 424.5 30.0 311 130-480 2-348 (364)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.4E-51 7.4E-56 414.0 30.1 294 128-476 8-329 (329)
14 cd06098 phytepsin Phytepsin, a 100.0 6E-51 1.3E-55 410.2 30.9 284 128-476 7-317 (317)
15 cd05487 renin_like Renin stimu 100.0 4.6E-51 1E-55 412.6 29.7 294 128-477 5-326 (326)
16 cd05475 nucellin_like Nucellin 100.0 8.1E-51 1.8E-55 400.8 28.5 258 130-479 1-273 (273)
17 PTZ00147 plasmepsin-1; Provisi 100.0 8.3E-50 1.8E-54 415.8 31.3 301 117-478 127-450 (453)
18 cd05476 pepsin_A_like_plant Ch 100.0 7.9E-50 1.7E-54 392.2 28.2 253 131-479 1-265 (265)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.4E-49 1.6E-53 407.9 30.8 300 118-478 127-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 1.1E-47 2.5E-52 379.5 26.1 261 132-476 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.1E-46 6.7E-51 372.0 26.7 269 131-477 2-295 (295)
22 cd05471 pepsin_like Pepsin-lik 100.0 2.8E-44 6E-49 354.6 26.8 264 132-476 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 6.6E-45 1.4E-49 365.3 17.4 294 131-477 1-317 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 5.4E-33 1.2E-37 253.0 12.6 160 132-304 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 1.4E-28 3E-33 223.5 15.9 149 327-476 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 7.5E-23 1.6E-27 173.3 11.9 105 134-270 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.00013 2.9E-09 59.2 6.5 94 130-272 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.5 0.11 2.4E-06 44.6 9.2 96 128-272 8-103 (121)
29 TIGR02281 clan_AA_DTGA clan AA 94.2 1.1 2.3E-05 38.5 11.9 36 325-373 9-44 (121)
30 PF13650 Asp_protease_2: Aspar 94.0 0.26 5.6E-06 39.1 7.2 89 134-271 1-89 (90)
31 cd05479 RP_DDI RP_DDI; retrope 92.7 1.2 2.6E-05 38.2 9.9 103 335-474 21-124 (124)
32 cd05479 RP_DDI RP_DDI; retrope 89.9 1.6 3.5E-05 37.5 7.7 33 128-162 13-45 (124)
33 cd05484 retropepsin_like_LTR_2 89.9 0.36 7.8E-06 38.9 3.4 29 132-162 1-29 (91)
34 TIGR03698 clan_AA_DTGF clan AA 89.2 2.4 5.2E-05 35.5 8.1 23 450-472 85-107 (107)
35 PF13975 gag-asp_proteas: gag- 83.4 1.9 4.1E-05 33.2 4.1 36 128-165 5-40 (72)
36 PF13650 Asp_protease_2: Aspar 83.3 1.6 3.6E-05 34.3 3.9 29 335-373 3-31 (90)
37 PF08284 RVP_2: Retroviral asp 83.0 13 0.00029 32.4 9.8 28 450-477 105-132 (135)
38 cd05484 retropepsin_like_LTR_2 82.5 2.3 5E-05 34.2 4.5 30 334-373 4-33 (91)
39 PF00077 RVP: Retroviral aspar 80.0 2.4 5.3E-05 34.4 3.9 28 133-162 7-34 (100)
40 PF13975 gag-asp_proteas: gag- 76.3 4.5 9.8E-05 31.1 4.2 29 335-373 13-41 (72)
41 cd05483 retropepsin_like_bacte 75.5 5.6 0.00012 31.5 4.8 30 334-373 6-35 (96)
42 cd06095 RP_RTVL_H_like Retrope 69.0 7.1 0.00015 31.0 3.9 29 335-373 3-31 (86)
43 cd05482 HIV_retropepsin_like R 67.9 5.9 0.00013 31.9 3.1 25 135-161 2-26 (87)
44 PF12384 Peptidase_A2B: Ty3 tr 64.4 1.1E+02 0.0024 27.7 10.6 51 310-373 14-67 (177)
45 PF11925 DUF3443: Protein of u 64.0 80 0.0017 32.3 10.9 54 217-274 83-150 (370)
46 cd06095 RP_RTVL_H_like Retrope 63.3 8.6 0.00019 30.5 3.3 26 135-162 2-27 (86)
47 PF00077 RVP: Retroviral aspar 61.4 7.1 0.00015 31.6 2.6 27 334-370 9-35 (100)
48 COG3577 Predicted aspartyl pro 53.4 35 0.00077 31.9 5.8 36 325-373 103-138 (215)
49 cd05481 retropepsin_like_LTR_1 52.5 18 0.00039 29.3 3.5 21 354-374 13-33 (93)
50 COG3577 Predicted aspartyl pro 52.4 76 0.0017 29.8 7.8 74 128-240 102-175 (215)
51 COG5550 Predicted aspartyl pro 45.7 52 0.0011 28.3 5.2 88 354-472 29-117 (125)
52 PF09668 Asp_protease: Asparty 44.8 35 0.00076 29.4 4.2 30 334-373 28-57 (124)
53 PF12384 Peptidase_A2B: Ty3 tr 37.9 42 0.0009 30.4 3.6 29 133-161 34-62 (177)
54 cd05470 pepsin_retropepsin_lik 29.5 53 0.0011 26.7 2.9 17 354-370 14-30 (109)
55 PF09668 Asp_protease: Asparty 25.3 1.1E+02 0.0025 26.3 4.2 32 128-161 21-52 (124)
56 COG5567 Predicted small peripl 23.4 51 0.0011 23.9 1.4 19 1-20 1-19 (58)
57 cd06098 phytepsin Phytepsin, a 21.0 1.2E+02 0.0027 30.1 4.2 33 325-368 8-40 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.6e-76 Score=617.04 Aligned_cols=396 Identities=32% Similarity=0.575 Sum_probs=327.3
Q ss_pred CCceEEEEecCcCCCCCCCCCCCCCCccHHHHHHHhHHhHhhhhhhhhcccCCCCcccCcceeeceeecCC-CCeeEEEE
Q 011649 57 PGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNFKKTKAFTFPAKTGIV-AADEYYIV 135 (480)
Q Consensus 57 ~~~~~~~l~hr~~~~sp~~~~~~~~~~~~~~~l~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~p~~~g~~-~~~~Y~~~ 135 (480)
+++++++|+||++||||++++..+..+.++++++|+++|++++. ++... ..|+..+.. ++++|+++
T Consensus 22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~------------~~~~~~~~~~~~~~Y~v~ 88 (431)
T PLN03146 22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFR-PTDAS------------PNDPQSDLISNGGEYLMN 88 (431)
T ss_pred CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh-hcccc------------CCccccCcccCCccEEEE
Confidence 36799999999999999865544455788999999999998886 44211 123333333 78899999
Q ss_pred EEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCC-CCCCcc
Q 011649 136 VAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCS-SKECPY 214 (480)
Q Consensus 136 i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~-~~~c~y 214 (480)
|+||||+|++.|++||||+++||||.+|..|+.|..+.|||++|+||+.++|+++.|+.+.. ...|. ++.|.|
T Consensus 89 i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~------~~~c~~~~~c~y 162 (431)
T PLN03146 89 ISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN------QASCSDENTCTY 162 (431)
T ss_pred EEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC------CCCCCCCCCCee
Confidence 99999999999999999999999999999999988899999999999999999999987652 23475 456999
Q ss_pred eeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC-CCCCceeecCCCCccceeecccce---eEEEe
Q 011649 215 DIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ-NGASGIMGLDRGPVSIISKTNISY---FFYCL 290 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~---FS~cL 290 (480)
.+.|+||+.+.|++++|+|+|++.... .+.++++.|||++.+.+.| ...+||||||++++|+++|+.... |||||
T Consensus 163 ~i~Ygdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL 241 (431)
T PLN03146 163 SYSYGDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL 241 (431)
T ss_pred EEEeCCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence 999999988899999999999874311 1122899999999998877 358999999999999999987533 99999
Q ss_pred cCCC---CCceeEEeCCCCCcCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccC---CCCEEEecCCccee
Q 011649 291 HSPY---GSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT---KLSTEIDSGTIITR 364 (480)
Q Consensus 291 ~~~~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~---~~~~iiDSGT~~t~ 364 (480)
++.. ...|.|+||+.......++.||||+.+.. +.+|+|+|++|+||+++++++...|. .+++||||||++|+
T Consensus 242 ~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~ 320 (431)
T PLN03146 242 VPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTL 320 (431)
T ss_pred CCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcccee
Confidence 7632 24799999996422234589999986432 57999999999999999988776652 36899999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEeC
Q 011649 365 FPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALL 444 (480)
Q Consensus 365 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~ 444 (480)
||+++|++|+++|.+.+...+..... ..+++||+... ...+|+|+|+|+ |+++.|++++|+++...+..|+++...
T Consensus 321 Lp~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~ 396 (431)
T PLN03146 321 LPSDFYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPT 396 (431)
T ss_pred cCHHHHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecC
Confidence 99999999999999998643333333 45789998543 257899999998 499999999999988777899998865
Q ss_pred CCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 011649 445 PSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480 (480)
Q Consensus 445 ~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C~ 480 (480)
. +.+|||+.|||++||+||++++||||++.+|+
T Consensus 397 ~---~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 397 S---SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred C---CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 3 36999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-59 Score=485.92 Aligned_cols=336 Identities=38% Similarity=0.687 Sum_probs=285.2
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCC-CCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCI-HCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDK 206 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~ 206 (480)
..++|+++|.||||+|++.|++||||+++||+|.+|. .|+.+.++.|||++||||+++.|.++.|..... ..
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-------~~ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-------SC 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc-------Cc
Confidence 6789999999999999999999999999999999999 799876677999999999999999999998863 23
Q ss_pred CCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC---CCCCceeecCCCCccceeeccc
Q 011649 207 CSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ---NGASGIMGLDRGPVSIISKTNI 283 (480)
Q Consensus 207 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~sQl~~ 283 (480)
|.+..|.|.+.|+||+.++|++++|+|+|++.+. +..+++.|||++.+.+.+ .+.+||||||++++|+.+|+..
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~---~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~ 192 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTS---LPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPS 192 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEccccc---cccccEEEEeeecCccccccccccceEeecCCCCccceeeccc
Confidence 3378899999999988999999999999998421 222789999999997632 3689999999999999999988
Q ss_pred ce-----eEEEecCCCC---CceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccC--CC
Q 011649 284 SY-----FFYCLHSPYG---STGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT--KL 352 (480)
Q Consensus 284 ~~-----FS~cL~~~~~---~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~--~~ 352 (480)
.+ |||||.+... ..|.|+||+.|. .+.+.+.||||..++. .+|+|.|++|+||++. .++...+. .+
T Consensus 193 ~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 193 FYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTDGG 269 (398)
T ss_pred ccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecCCC
Confidence 76 9999998743 479999999998 6778899999999553 6999999999999987 66655554 27
Q ss_pred CEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEe
Q 011649 353 STEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE 432 (480)
Q Consensus 353 ~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 432 (480)
++||||||++++||+++|++|.++|.+.+. ...... .+++.||...... ..+|.|+|+|++|+.|.|++++|+++.
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~~~~~--~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~ 345 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVS-VVGTDG--EYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEV 345 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhhee-ccccCC--ceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEE
Confidence 899999999999999999999999999741 011111 3566999865443 569999999997799999999999998
Q ss_pred CCCeE-EEEEEeCCCCCCeeeechhhhceeEEEEeCC-CCEEEEee--CCCC
Q 011649 433 SVRQV-CLGFALLPSDPNSILLGNVQQRGYEVHYDVA-GRRLGFGP--GNCN 480 (480)
Q Consensus 433 ~~~~~-Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~-~~riGFa~--~~C~ 480 (480)
+.... |+++.........||||++|||+++++||.. ++||||++ ..|+
T Consensus 346 ~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 346 SDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 65444 9987765443358999999999999999999 99999999 7885
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.5e-58 Score=456.77 Aligned_cols=293 Identities=46% Similarity=0.853 Sum_probs=251.5
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCC
Q 011649 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSK 210 (480)
Q Consensus 131 ~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 210 (480)
+|+++|.||||+|++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999998765
Q ss_pred CCcceeeecCCCcEEEEEEEEEEEEeec-CCCcccccCCeEEEEEecCCCCCCCCCceeecCCCCccceeecccce---e
Q 011649 211 ECPYDIAYVDGSGETGFWATDRMTIQEV-NGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISY---F 286 (480)
Q Consensus 211 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~-~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~---F 286 (480)
|.|.+.|+||+.++|.+++|+|+|++. .. +++.|||+....+.+...+||||||+..+|+++|+.... |
T Consensus 34 -~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~------~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~F 106 (299)
T cd05472 34 -CLYQVSYGDGSYTTGDLATDTLTLGSSDVV------PGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVF 106 (299)
T ss_pred -CeeeeEeCCCceEEEEEEEEEEEeCCCCcc------CCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCce
Confidence 468899999987899999999999876 43 899999999888777789999999999999999987642 9
Q ss_pred EEEecCCC-CCceeEEeCCCCCcCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceec
Q 011649 287 FYCLHSPY-GSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRF 365 (480)
Q Consensus 287 S~cL~~~~-~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~L 365 (480)
|+||++.. ...|+|+||++|+. .+++.|+|+..++..+.+|.|+|++|+||++.+.+++.....+++||||||++++|
T Consensus 107 S~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~l 185 (299)
T cd05472 107 SYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRL 185 (299)
T ss_pred EEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceec
Confidence 99998754 45899999999966 88999999998665567999999999999999876543333467999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEe-CCCeEEEEEEeC
Q 011649 366 PAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE-SVRQVCLGFALL 444 (480)
Q Consensus 366 p~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~-~~~~~Cl~~~~~ 444 (480)
|+++|++|.+++.+.+...+...+. ..++.||+.++.....+|+|+|+|++|+++.|++++|++.. ..+..|+++...
T Consensus 186 p~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~ 264 (299)
T cd05472 186 PPSAYAALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGT 264 (299)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCCC-CCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCC
Confidence 9999999999999886543333333 45667998877666789999999986799999999999843 356789988876
Q ss_pred CCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCC
Q 011649 445 PSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC 479 (480)
Q Consensus 445 ~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C 479 (480)
....+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 265 ~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 265 SDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 43345799999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.4e-58 Score=467.27 Aligned_cols=326 Identities=25% Similarity=0.446 Sum_probs=262.9
Q ss_pred ecCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCC-----CCCCCCCCCCC
Q 011649 138 IGKPKQY-VSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFP-----PNGQDKCSSKE 211 (480)
Q Consensus 138 iGTP~q~-~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~-----~~~~~~C~~~~ 211 (480)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|+.+...-. ..+...|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5788777 999999999999999985 358899999999999987653000 00123677778
Q ss_pred Ccceee-ecCCCcEEEEEEEEEEEEeecCCCcc--cccCCeEEEEEecCC--CCCCCCCceeecCCCCccceeecccce-
Q 011649 212 CPYDIA-YVDGSGETGFWATDRMTIQEVNGNGY--FARYPFLLGCTDNNT--GDQNGASGIMGLDRGPVSIISKTNISY- 285 (480)
Q Consensus 212 c~y~~~-Ygdgs~~~G~~~~Dtltl~~~~~~~~--~~~~~~~FGc~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~~- 285 (480)
|.|... |++|+.++|++++|+|+|+..+.... +.++++.|||++++. +.+..++||||||++++|+++|+....
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 999765 88998999999999999975432110 122899999999874 344568999999999999999987632
Q ss_pred ----eEEEecCCCCCceeEEeCCCCC-cC------CCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccC----
Q 011649 286 ----FFYCLHSPYGSTGYITFGKPDT-VN------KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT---- 350 (480)
Q Consensus 286 ----FS~cL~~~~~~~G~L~fGg~d~-~~------~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~---- 350 (480)
|||||++.....|.|+||+.+. .+ .+++.||||+.++..+.+|+|+|++|+||++++.+++..+.
T Consensus 148 ~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~ 227 (362)
T cd05489 148 VARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRL 227 (362)
T ss_pred CCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccccc
Confidence 9999997655589999999875 33 37899999998765568999999999999999988765442
Q ss_pred -CCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCC----cccccceEEEEEcC-CcEEEec
Q 011649 351 -KLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAY----KTVVVPKITIHFLG-GVDLELD 424 (480)
Q Consensus 351 -~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~P~i~~~f~g-g~~~~l~ 424 (480)
.+++||||||++|+||+++|++|+++|.+++...+........++.||+.... ....+|.|+|+|+| |++|+|+
T Consensus 228 ~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~ 307 (362)
T cd05489 228 GPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIF 307 (362)
T ss_pred CCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEc
Confidence 36899999999999999999999999999886544333221234799986532 13689999999987 8999999
Q ss_pred CCCeEEEeCCCeEEEEEEeCCCC-CCeeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 425 VRGTLVVESVRQVCLGFALLPSD-PNSILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 425 ~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
+++|+++...+.+|++|...+.. .+.||||+.|||++|++||++++|||||+.
T Consensus 308 ~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 308 GANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999998777899999876532 357999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.6e-55 Score=442.56 Aligned_cols=298 Identities=27% Similarity=0.486 Sum_probs=247.0
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 130 ~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+..+.|||++|+|++.++|++..|.. ...|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~---------~~~~~~ 72 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY---------CLSCLN 72 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc---------cCcCCC
Confidence 58999999999999999999999999999999999998877789999999999999999999953 235777
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCc-ccccCCeEEEEEecCCCCC--CCCCceeecCCCCcc-ce-------
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNG-YFARYPFLLGCTDNNTGDQ--NGASGIMGLDRGPVS-II------- 278 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~-~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~~S-l~------- 278 (480)
+.|.|.+.|+||+.+.|.+++|+|+|++..... .....++.|||+....+.| ...+||||||+...+ +.
T Consensus 73 ~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 73 NKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred CcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHH
Confidence 789999999999889999999999998765310 0011368899999887765 568999999998743 11
Q ss_pred eecc-c---ceeEEEecCCCCCceeEEeCCCCC-cCC----------CCcEEeeceeCCCCCeeEEEEEeeEEEcceEee
Q 011649 279 SKTN-I---SYFFYCLHSPYGSTGYITFGKPDT-VNK----------KFVKYTPIVTTPEQSEFYHITLTGISVGGERLP 343 (480)
Q Consensus 279 sQl~-~---~~FS~cL~~~~~~~G~L~fGg~d~-~~~----------~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~ 343 (480)
.|.. . ..||+||++. .|+|+||++|+ ++. +++.|+|+.. +.+|.|.+++|+|+++...
T Consensus 153 ~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 153 TKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc
Confidence 2222 1 2299999864 69999999997 544 7899999987 5789999999999998611
Q ss_pred -cCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEE
Q 011649 344 -LKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLE 422 (480)
Q Consensus 344 -i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~ 422 (480)
.... ...+||||||++++||+++|++|.+++ |+|+|+|++|+++.
T Consensus 226 ~~~~~---~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~~ 271 (326)
T cd06096 226 SGNTK---GLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKID 271 (326)
T ss_pred eeccc---CCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEEE
Confidence 1111 257999999999999999999997655 88999998679999
Q ss_pred ecCCCeEEEeCCCeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 011649 423 LDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480 (480)
Q Consensus 423 l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C~ 480 (480)
|+|++|++..+....|+++.... +.+|||++|||++|+|||++++|||||+++|.
T Consensus 272 i~p~~y~~~~~~~~c~~~~~~~~---~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 272 WKPSSYLYKKESFWCKGGEKSVS---NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ECHHHhccccCCceEEEEEecCC---CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999875444555665432 47999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.7e-54 Score=432.89 Aligned_cols=292 Identities=22% Similarity=0.408 Sum_probs=244.0
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQD 205 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~ 205 (480)
.+..|+++|.||||+|++.|++||||+++||+|..|.. |.. .+.|||++|+|++..
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~--~~~f~~~~Sst~~~~-------------------- 64 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN--HNRFNPRQSSTYQST-------------------- 64 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc--cCcCCCCCCcceeeC--------------------
Confidence 57899999999999999999999999999999999986 654 489999999999876
Q ss_pred CCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC---CCCCceeecCCCCcc------
Q 011649 206 KCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ---NGASGIMGLDRGPVS------ 276 (480)
Q Consensus 206 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------ 276 (480)
+ |.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||++...+.+ ...+||||||+...+
T Consensus 65 ~-----~~~~~~yg~gs-~~G~~~~D~v~ig~~~i------~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (317)
T cd05478 65 G-----QPLSIQYGTGS-MTGILGYDTVQVGGISD------TNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATP 132 (317)
T ss_pred C-----cEEEEEECCce-EEEEEeeeEEEECCEEE------CCEEEEEEEecCccccccccccceeeeccchhcccCCCC
Confidence 2 68999999996 89999999999988765 899999999877654 357999999987543
Q ss_pred ceeecccce------eEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCcccc
Q 011649 277 IISKTNISY------FFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYF 349 (480)
Q Consensus 277 l~sQl~~~~------FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~ 349 (480)
++.|+..+. ||+||.+.....|+|+|||+|+ ++.+++.|+|+.. +.+|.|.+++|+|+|+.+.....
T Consensus 133 ~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~-- 206 (317)
T cd05478 133 VFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG-- 206 (317)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC--
Confidence 444544332 9999998755679999999997 7889999999976 68999999999999998864432
Q ss_pred CCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeE
Q 011649 350 TKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTL 429 (480)
Q Consensus 350 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 429 (480)
..+||||||++++||+++|++|.+++.+.. . .. .+|.++|.....+|.|+|+|+| +++.|++++|+
T Consensus 207 --~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---~-~~-------~~~~~~C~~~~~~P~~~f~f~g-~~~~i~~~~y~ 272 (317)
T cd05478 207 --CQAIVDTGTSLLVGPSSDIANIQSDIGASQ---N-QN-------GEMVVNCSSISSMPDVVFTING-VQYPLPPSAYI 272 (317)
T ss_pred --CEEEECCCchhhhCCHHHHHHHHHHhCCcc---c-cC-------CcEEeCCcCcccCCcEEEEECC-EEEEECHHHhe
Confidence 469999999999999999999998886542 1 11 1244444445678999999965 99999999999
Q ss_pred EEeCCCeEEE-EEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 430 VVESVRQVCL-GFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 430 ~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
++. ...|+ +|...+. .+.||||++|||++|+|||++++|||||+
T Consensus 273 ~~~--~~~C~~~~~~~~~-~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 273 LQD--QGSCTSGFQSMGL-GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ecC--CCEEeEEEEeCCC-CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 875 56898 5766543 35799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.2e-53 Score=427.41 Aligned_cols=295 Identities=24% Similarity=0.366 Sum_probs=239.4
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCC----CCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNG 203 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 203 (480)
.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~------------------ 62 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKN------------------ 62 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeC------------------
Confidence 4689999999999999999999999999999999997 37655 78999999999863
Q ss_pred CCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCccce--
Q 011649 204 QDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSII-- 278 (480)
Q Consensus 204 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~-- 278 (480)
+ |.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||++...+. | ...+||||||++..|..
T Consensus 63 --~-----~~~~i~Yg~G~-~~G~~~~D~v~~g~~~~------~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 128 (325)
T cd05490 63 --G-----TEFAIQYGSGS-LSGYLSQDTVSIGGLQV------EGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGV 128 (325)
T ss_pred --C-----cEEEEEECCcE-EEEEEeeeEEEECCEEE------cCEEEEEEeeccCCcccceeeeEEEecCCccccccCC
Confidence 2 79999999995 89999999999988765 89999999987653 3 46799999999876543
Q ss_pred ----eecccc----e--eEEEecCCC--CCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecC
Q 011649 279 ----SKTNIS----Y--FFYCLHSPY--GSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLK 345 (480)
Q Consensus 279 ----sQl~~~----~--FS~cL~~~~--~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~ 345 (480)
.|+..+ . ||+||++.. ...|+|+|||+|+ ++.+++.|+|+.. ..+|.|+|++|+||++.....
T Consensus 129 ~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~ 204 (325)
T cd05490 129 TPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCK 204 (325)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecC
Confidence 233322 1 999998643 2379999999998 7889999999976 679999999999998754322
Q ss_pred ccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecC
Q 011649 346 ASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDV 425 (480)
Q Consensus 346 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 425 (480)
. ...+||||||+++++|++++++|.+++.+. +...+. +..+|+ ....+|+|+|+|+| +++.|+|
T Consensus 205 ~----~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~~--~~~~C~-----~~~~~P~i~f~fgg-~~~~l~~ 268 (325)
T cd05490 205 G----GCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQGE--YMIDCE-----KIPTLPVISFSLGG-KVYPLTG 268 (325)
T ss_pred C----CCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCCC--EEeccc-----ccccCCCEEEEECC-EEEEECh
Confidence 2 146999999999999999999999888642 222222 233554 34678999999965 9999999
Q ss_pred CCeEEEeC--CCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 426 RGTLVVES--VRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 426 ~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
++|+++.. ....|+ +|.... ...+.||||++|||++|+|||++++|||||+
T Consensus 269 ~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 269 EDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred HHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99998764 345898 676532 1235799999999999999999999999986
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-52 Score=422.31 Aligned_cols=294 Identities=23% Similarity=0.414 Sum_probs=243.4
Q ss_pred CeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCC
Q 011649 129 ADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDK 206 (480)
Q Consensus 129 ~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~ 206 (480)
+..|+++|.||||+|++.|++||||+++||+|..|.. |..+ +.|||++|+||+.. +
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~--------------------~ 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTN--------------------G 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceEC--------------------C
Confidence 3689999999999999999999999999999999985 7754 79999999999865 2
Q ss_pred CCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCc------cc
Q 011649 207 CSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPV------SI 277 (480)
Q Consensus 207 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~------Sl 277 (480)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||++...+. | ...+||||||+... ++
T Consensus 59 -----~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~i------~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 126 (318)
T cd05477 59 -----ETFSLQYGSGS-LTGIFGYDTVTVQGIII------TNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTV 126 (318)
T ss_pred -----cEEEEEECCcE-EEEEEEeeEEEECCEEE------cCEEEEEEEecccccccccceeeEeecCcccccccCCCCH
Confidence 79999999995 79999999999988764 89999999987653 2 46799999998643 45
Q ss_pred eeecccce------eEEEecCCC-CCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCcccc
Q 011649 278 ISKTNISY------FFYCLHSPY-GSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYF 349 (480)
Q Consensus 278 ~sQl~~~~------FS~cL~~~~-~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~ 349 (480)
++||..+. ||+||++.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+|+++++.+....
T Consensus 127 ~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~- 201 (318)
T cd05477 127 MQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG- 201 (318)
T ss_pred HHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC-
Confidence 55665432 999998752 3469999999997 7889999999976 679999999999999987643322
Q ss_pred CCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeE
Q 011649 350 TKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTL 429 (480)
Q Consensus 350 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 429 (480)
..+||||||++++||+++|++|++++.+... .. .+|.++|.....+|.|+|+|+| +++.|++++|+
T Consensus 202 --~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~~-------~~~~~~C~~~~~~p~l~~~f~g-~~~~v~~~~y~ 267 (318)
T cd05477 202 --CQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD----QY-------GQYVVNCNNIQNLPTLTFTING-VSFPLPPSAYI 267 (318)
T ss_pred --ceeeECCCCccEECCHHHHHHHHHHhCCccc----cC-------CCEEEeCCccccCCcEEEEECC-EEEEECHHHeE
Confidence 4599999999999999999999998876521 11 2344555555678999999975 99999999999
Q ss_pred EEeCCCeEEE-EEEeCC----CCCCeeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 430 VVESVRQVCL-GFALLP----SDPNSILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 430 ~~~~~~~~Cl-~~~~~~----~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
++. ...|+ +|.+.. .+.+.+|||+.|||++|++||++++|||||++
T Consensus 268 ~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 268 LQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 875 46796 887531 12246999999999999999999999999985
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-52 Score=422.84 Aligned_cols=290 Identities=23% Similarity=0.416 Sum_probs=237.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 132 Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
|+++|+||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+||+.. +
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~--------------------~--- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSN--------------------G--- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccC--------------------C---
Confidence 8999999999999999999999999999999984 8765 78999999999875 3
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCccc---------
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSI--------- 277 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl--------- 277 (480)
|.|.+.|++| .+.|.+++|+|+|++..+ +++.|||+....+. | ...+||||||++..+.
T Consensus 56 --~~~~i~Yg~g-~~~G~~~~D~v~ig~~~~------~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~ 126 (316)
T cd05486 56 --EAFSIQYGTG-SLTGIIGIDQVTVEGITV------QNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDN 126 (316)
T ss_pred --cEEEEEeCCc-EEEEEeeecEEEECCEEE------cCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHH
Confidence 7999999999 589999999999987665 89999999877653 3 4689999999987653
Q ss_pred -eeecccce--eEEEecCCC--CCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCC
Q 011649 278 -ISKTNISY--FFYCLHSPY--GSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTK 351 (480)
Q Consensus 278 -~sQl~~~~--FS~cL~~~~--~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~ 351 (480)
.+|..... ||+||.+.+ ...|.|+|||+|+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+..+..
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~---- 198 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG---- 198 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----
Confidence 23332222 999998642 2479999999998 7889999999976 67999999999999998754332
Q ss_pred CCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEE
Q 011649 352 LSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVV 431 (480)
Q Consensus 352 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 431 (480)
..+||||||++++||++++++|.+++.+. ...+ +|.++|.....+|+|+|+|+| ++++|++++|++.
T Consensus 199 ~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-----~~~~-------~~~~~C~~~~~~p~i~f~f~g-~~~~l~~~~y~~~ 265 (316)
T cd05486 199 CQAIVDTGTSLITGPSGDIKQLQNYIGAT-----ATDG-------EYGVDCSTLSLMPSVTFTING-IPYSLSPQAYTLE 265 (316)
T ss_pred CEEEECCCcchhhcCHHHHHHHHHHhCCc-----ccCC-------cEEEeccccccCCCEEEEECC-EEEEeCHHHeEEe
Confidence 46999999999999999999998777542 1111 233444444579999999965 9999999999987
Q ss_pred e--CCCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 432 E--SVRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 432 ~--~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
. +....|+ +|.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 266 ~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 266 DQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 5 2456897 776542 2234799999999999999999999999996
No 10
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5e-52 Score=435.56 Aligned_cols=298 Identities=20% Similarity=0.384 Sum_probs=242.7
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQD 205 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~ 205 (480)
.+.+|+++|+||||||++.|++||||+++||+|..|.. |..+ +.|||++||||+++.+..
T Consensus 117 ~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~---------------- 178 (482)
T PTZ00165 117 HNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGD---------------- 178 (482)
T ss_pred cCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCC----------------
Confidence 78899999999999999999999999999999999986 7654 799999999999852211
Q ss_pred CCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCC-CC--CCCCceeecCCCCcc------
Q 011649 206 KCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTG-DQ--NGASGIMGLDRGPVS------ 276 (480)
Q Consensus 206 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S------ 276 (480)
. ...+.++|++| ...|.+++|+|+|++..+ +++.|||++...+ .| ..+|||||||+..++
T Consensus 179 ~----~~~~~i~YGsG-s~~G~l~~DtV~ig~l~i------~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 179 E----SAETYIQYGTG-ECVLALGKDTVKIGGLKV------KHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred c----cceEEEEeCCC-cEEEEEEEEEEEECCEEE------ccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 0 12467999999 578999999999988765 9999999998765 34 468999999998753
Q ss_pred ---ceeecccc----e--eEEEecCCCCCceeEEeCCCCC-cC--CCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeec
Q 011649 277 ---IISKTNIS----Y--FFYCLHSPYGSTGYITFGKPDT-VN--KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPL 344 (480)
Q Consensus 277 ---l~sQl~~~----~--FS~cL~~~~~~~G~L~fGg~d~-~~--~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i 344 (480)
++.|+..+ . ||+||++.....|.|+|||+|+ .+ .+++.|+|+.. ..+|.|.+++|+||++.+..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~ 323 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGF 323 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeee
Confidence 22333322 2 9999987655689999999997 33 46899999987 67999999999999988765
Q ss_pred CccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcC--C--cE
Q 011649 345 KASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLG--G--VD 420 (480)
Q Consensus 345 ~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g--~~ 420 (480)
.... ..+|+||||+++++|+++|++|.+++.+. ..|.+ ...+|+|+|+|+| | .+
T Consensus 324 ~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~-----~~~lP~itf~f~g~~g~~v~ 381 (482)
T PTZ00165 324 CDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSN-----KDSLPRISFVLEDVNGRKIK 381 (482)
T ss_pred cCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------ccccc-----cccCCceEEEECCCCCceEE
Confidence 3222 46999999999999999999998876432 25754 3578999999975 2 38
Q ss_pred EEecCCCeEEEe----CCCeEEE-EEEeCCC---CCCeeeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 011649 421 LELDVRGTLVVE----SVRQVCL-GFALLPS---DPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480 (480)
Q Consensus 421 ~~l~~~~~~~~~----~~~~~Cl-~~~~~~~---~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C~ 480 (480)
+.|+|++|+++. ..+..|+ +|...+. .++.||||++|||++|+|||.+++|||||+++|+
T Consensus 382 ~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 382 FDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred EEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 999999999974 2456896 8887532 2357999999999999999999999999999884
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.3e-52 Score=418.47 Aligned_cols=292 Identities=23% Similarity=0.387 Sum_probs=241.0
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQD 205 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~ 205 (480)
.+..|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+|++..
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~-------------------- 64 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKAN-------------------- 64 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeC--------------------
Confidence 56789999999999999999999999999999999984 8765 68999999998764
Q ss_pred CCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCccceee--
Q 011649 206 KCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSIISK-- 280 (480)
Q Consensus 206 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ-- 280 (480)
+ |.|.+.|++|+ ++|.+++|+|+|++..+ +++.|||++...+. | ...+||||||++..++..+
T Consensus 65 ~-----~~~~~~y~~g~-~~G~~~~D~v~ig~~~~------~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 65 G-----TEFKIQYGSGS-LEGFVSQDTLSIGDLTI------KKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred C-----CEEEEEECCce-EEEEEEEeEEEECCEEE------CCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 2 78999999995 89999999999987664 89999999887664 2 4679999999988765432
Q ss_pred --------ccc--ceeEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCcccc
Q 011649 281 --------TNI--SYFFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYF 349 (480)
Q Consensus 281 --------l~~--~~FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~ 349 (480)
-.. ..||+||.+.....|.|+|||+|+ ++.+++.|+|+.. ..+|.|++++|+||++.+..+.
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~--- 205 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN--- 205 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC---
Confidence 211 129999998655689999999997 7889999999986 6789999999999998876442
Q ss_pred CCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeE
Q 011649 350 TKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTL 429 (480)
Q Consensus 350 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 429 (480)
..+||||||++++||++++++|.+++.+.. . . ..+|.++|.....+|.|+|+|+| +++.|++++|+
T Consensus 206 --~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~---~-~-------~~~~~~~C~~~~~~P~i~f~f~g-~~~~i~~~~y~ 271 (320)
T cd05488 206 --TGAAIDTGTSLIALPSDLAEMLNAEIGAKK---S-W-------NGQYTVDCSKVDSLPDLTFNFDG-YNFTLGPFDYT 271 (320)
T ss_pred --CeEEEcCCcccccCCHHHHHHHHHHhCCcc---c-c-------CCcEEeeccccccCCCEEEEECC-EEEEECHHHhe
Confidence 459999999999999999999988875431 1 1 12344555545679999999965 99999999999
Q ss_pred EEeCCCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 430 VVESVRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 430 ~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
++. ...|+ .+.... ...+.||||+.|||++|++||.+++|||||+
T Consensus 272 ~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 864 35798 555432 1124799999999999999999999999986
No 12
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=7.5e-52 Score=424.52 Aligned_cols=311 Identities=24% Similarity=0.352 Sum_probs=241.6
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 130 ~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+.. +
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~--------------------~--- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDL--------------------G--- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccC--------------------C---
Confidence 4699999999999999999999999999999988433 368999999999876 3
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC---CCCCceeecCCCCc-----------
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ---NGASGIMGLDRGPV----------- 275 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~----------- 275 (480)
|.|.+.|++|+ +.|.+++|+|+|++... +. -.+.|++.+...+.| ...+||||||+..+
T Consensus 55 --~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~---~~-~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~ 127 (364)
T cd05473 55 --KGVTVPYTQGS-WEGELGTDLVSIPKGPN---VT-FRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFF 127 (364)
T ss_pred --ceEEEEECcce-EEEEEEEEEEEECCCCc---cc-eEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHH
Confidence 79999999994 79999999999975321 10 123466776665544 25799999999876
Q ss_pred -cceeecccce-eEEEecC---------CCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEee
Q 011649 276 -SIISKTNISY-FFYCLHS---------PYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLP 343 (480)
Q Consensus 276 -Sl~sQl~~~~-FS~cL~~---------~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~ 343 (480)
+|++|..... ||+||.. .....|.|+|||+|+ ++.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 128 ~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~ 203 (364)
T cd05473 128 DSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLN 203 (364)
T ss_pred HHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecc
Confidence 4666766543 9997742 112379999999997 7889999999976 6789999999999999987
Q ss_pred cCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCc--ccccccceecCCCcccccceEEEEEcCC---
Q 011649 344 LKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGI--EDLFDTCYDLSAYKTVVVPKITIHFLGG--- 418 (480)
Q Consensus 344 i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg--- 418 (480)
++...+...++||||||++++||+++|++|.+++++++.. +..... .....+|++........+|+|+|+|+|+
T Consensus 204 ~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~ 282 (364)
T cd05473 204 LDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSS 282 (364)
T ss_pred cccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCchHhhCCcEEEEEccCCCC
Confidence 6554443246999999999999999999999999987531 111110 0123478865432224699999999762
Q ss_pred --cEEEecCCCeEEEeC---CCeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 011649 419 --VDLELDVRGTLVVES---VRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480 (480)
Q Consensus 419 --~~~~l~~~~~~~~~~---~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C~ 480 (480)
.++.|+|++|+.... ....|+++..... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 283 ~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 283 QSFRITILPQLYLRPVEDHGTQLDCYKFAISQS-TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred ceEEEEECHHHhhhhhccCCCcceeeEEeeecC-CCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 478999999998642 2468986543322 246999999999999999999999999999995
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.4e-51 Score=414.02 Aligned_cols=294 Identities=23% Similarity=0.402 Sum_probs=240.5
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCC----CCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNG 203 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 203 (480)
.+..|+++|.||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 8 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~Sst~~~~------------------ 67 (329)
T cd05485 8 MDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH--NKYDSTKSSTYKKN------------------ 67 (329)
T ss_pred cCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC--CeECCcCCCCeEEC------------------
Confidence 6789999999999999999999999999999999997 37543 68999999998875
Q ss_pred CCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCccc---
Q 011649 204 QDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSI--- 277 (480)
Q Consensus 204 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl--- 277 (480)
+ |.|.+.|++|+ +.|.+++|+++|++..+ +++.|||+....+. | ...+||||||++..|.
T Consensus 68 --~-----~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~------~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 133 (329)
T cd05485 68 --G-----TEFAIQYGSGS-LSGFLSTDTVSVGGVSV------KGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGV 133 (329)
T ss_pred --C-----eEEEEEECCce-EEEEEecCcEEECCEEE------CCEEEEEEEecCCccccccccceEEEcCCccccccCC
Confidence 2 79999999996 89999999999987765 89999999887653 3 4679999999987663
Q ss_pred -------eeecccc--eeEEEecCCCC--CceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecC
Q 011649 278 -------ISKTNIS--YFFYCLHSPYG--STGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLK 345 (480)
Q Consensus 278 -------~sQl~~~--~FS~cL~~~~~--~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~ 345 (480)
.+|.... .||+||.+... ..|+|+|||+|+ ++.+++.|+|+.. +.+|.|.+++|+|+++.+...
T Consensus 134 ~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~ 209 (329)
T cd05485 134 VPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSG 209 (329)
T ss_pred CCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCC
Confidence 2333222 29999986532 479999999997 7789999999975 689999999999999876421
Q ss_pred ccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecC
Q 011649 346 ASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDV 425 (480)
Q Consensus 346 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 425 (480)
...+||||||++++||++++++|.+++.+. .... .||.++|.....+|+|+|+|+| +.+.|++
T Consensus 210 -----~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~-------~~~~~~C~~~~~~p~i~f~fgg-~~~~i~~ 272 (329)
T cd05485 210 -----GCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIG-------GEYMVNCSAIPSLPDITFVLGG-KSFSLTG 272 (329)
T ss_pred -----CcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccC-------CcEEEeccccccCCcEEEEECC-EEeEECh
Confidence 135999999999999999999998887653 1111 2344555555678999999965 9999999
Q ss_pred CCeEEEeC--CCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 426 RGTLVVES--VRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 426 ~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
++|+++.. ....|+ +|.... ...+.+|||+.|||++|+|||++++|||||+
T Consensus 273 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 273 KDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99999864 346898 677532 2234799999999999999999999999985
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=6e-51 Score=410.24 Aligned_cols=284 Identities=23% Similarity=0.402 Sum_probs=233.8
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCC---CCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCI---HCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQ 204 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 204 (480)
.+..|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+..
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~------------------- 65 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKN------------------- 65 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccC-------------------
Confidence 6789999999999999999999999999999999996 49865 78999999998865
Q ss_pred CCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCccc----
Q 011649 205 DKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSI---- 277 (480)
Q Consensus 205 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl---- 277 (480)
+ +.+.+.|++|+ +.|.+++|+|+|++..+ +++.|||++...+. | ...+||||||+...+.
T Consensus 66 -~-----~~~~i~Yg~G~-~~G~~~~D~v~ig~~~v------~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 66 -G-----TSASIQYGTGS-ISGFFSQDSVTVGDLVV------KNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred -C-----CEEEEEcCCce-EEEEEEeeEEEECCEEE------CCEEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 2 57899999995 79999999999988664 89999999976542 3 4689999999987653
Q ss_pred ------eeecccc--eeEEEecCCC--CCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCc
Q 011649 278 ------ISKTNIS--YFFYCLHSPY--GSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKA 346 (480)
Q Consensus 278 ------~sQl~~~--~FS~cL~~~~--~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~ 346 (480)
.+|.... .||+||.+.. ...|.|+|||+|+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+.+..
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~ 208 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA 208 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC
Confidence 3332222 2999998652 2479999999998 7889999999976 6799999999999999876543
Q ss_pred cccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCC
Q 011649 347 SYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVR 426 (480)
Q Consensus 347 ~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 426 (480)
.. ..+||||||++++||++++++|. ...+|++ ...+|+|+|+|+| +.++|+++
T Consensus 209 ~~---~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~-----~~~~P~i~f~f~g-~~~~l~~~ 261 (317)
T cd06098 209 GG---CAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNS-----LSSMPNVSFTIGG-KTFELTPE 261 (317)
T ss_pred CC---cEEEEecCCcceeCCHHHHHhhh------------------ccCCccc-----cccCCcEEEEECC-EEEEEChH
Confidence 32 35999999999999998876653 1125764 3468999999965 99999999
Q ss_pred CeEEEeC--CCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 427 GTLVVES--VRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 427 ~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
+|+++.. ....|+ +|...+ ...+.||||++|||++|+|||++++|||||+
T Consensus 262 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 262 QYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9998764 245897 676532 1234799999999999999999999999985
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.6e-51 Score=412.65 Aligned_cols=294 Identities=22% Similarity=0.411 Sum_probs=240.5
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC----CCCCCCCCCCCCCCCccccccCCCccccccccCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH----CSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNG 203 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~----C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 203 (480)
.+..|+++|.||||+|+++|++||||+++||+|..|.. |..+ +.|||++|+||+..
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~------------------ 64 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKEN------------------ 64 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeEC------------------
Confidence 56899999999999999999999999999999888864 6544 78999999999875
Q ss_pred CCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCC-CC--CCCCceeecCCCCcc----
Q 011649 204 QDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTG-DQ--NGASGIMGLDRGPVS---- 276 (480)
Q Consensus 204 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S---- 276 (480)
+ |.|.+.|++|+ +.|.+++|+|+|++..+ ++.|||+....+ .| ...+||||||++..+
T Consensus 65 --~-----~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~-------~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 129 (326)
T cd05487 65 --G-----TEFTIHYASGT-VKGFLSQDIVTVGGIPV-------TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGV 129 (326)
T ss_pred --C-----EEEEEEeCCce-EEEEEeeeEEEECCEEe-------eEEEEEEEeccCCccceeecceEEecCChhhcccCC
Confidence 3 79999999995 89999999999987653 378999987643 22 468999999997654
Q ss_pred ------ceeecccce--eEEEecCCC--CCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecC
Q 011649 277 ------IISKTNISY--FFYCLHSPY--GSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLK 345 (480)
Q Consensus 277 ------l~sQl~~~~--FS~cL~~~~--~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~ 345 (480)
|.+|..... ||+||.+.+ ...|.|+||++|+ ++.+++.|+|+.. +.+|.|.|++|+|+++.+.+.
T Consensus 130 ~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~ 205 (326)
T cd05487 130 TPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCE 205 (326)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecC
Confidence 455543332 999998753 3479999999998 7889999999875 679999999999999987544
Q ss_pred ccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecC
Q 011649 346 ASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDV 425 (480)
Q Consensus 346 ~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 425 (480)
.. ..+||||||++++||++++++|++++++.. . .+ .+..+|. ....+|+|+|+|+| ..+.|++
T Consensus 206 ~~----~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---~--~~--~y~~~C~-----~~~~~P~i~f~fgg-~~~~v~~ 268 (326)
T cd05487 206 DG----CTAVVDTGASFISGPTSSISKLMEALGAKE---R--LG--DYVVKCN-----EVPTLPDISFHLGG-KEYTLSS 268 (326)
T ss_pred CC----CEEEECCCccchhCcHHHHHHHHHHhCCcc---c--CC--CEEEecc-----ccCCCCCEEEEECC-EEEEeCH
Confidence 32 459999999999999999999999886542 1 11 2333554 45678999999965 9999999
Q ss_pred CCeEEEeC--CCeEEE-EEEeCC---CCCCeeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 426 RGTLVVES--VRQVCL-GFALLP---SDPNSILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 426 ~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||++++|||||++
T Consensus 269 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 269 SDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999864 256897 787643 22347999999999999999999999999985
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=8.1e-51 Score=400.84 Aligned_cols=258 Identities=30% Similarity=0.542 Sum_probs=216.6
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCC
Q 011649 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCK-PCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCS 208 (480)
Q Consensus 130 ~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~-~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~ 208 (480)
++|+++|.||||+|++.|++||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999994 67555
Q ss_pred CCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC----CCCCceeecCCCCccceeecccc
Q 011649 209 SKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ----NGASGIMGLDRGPVSIISKTNIS 284 (480)
Q Consensus 209 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~ 284 (480)
.|.|.+.|+|++.++|.+++|+|+|+.......+ +++.|||++.+.+.+ ...+||||||+++.|+++|+..+
T Consensus 39 --~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~--~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~ 114 (273)
T cd05475 39 --QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAK--PRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQ 114 (273)
T ss_pred --cCccEeEeCCCCceEEEEEEEEEEEeecCCCccc--CCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhc
Confidence 0899999999889999999999999754221113 899999998876543 46899999999999999998754
Q ss_pred e-----eEEEecCCCCCceeEEeCCCCCcCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCCCEEEecC
Q 011649 285 Y-----FFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSG 359 (480)
Q Consensus 285 ~-----FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSG 359 (480)
. ||+||++. ..|.|+||+.. ++.+++.|+|+..++. ..+|.|++.+|+||++.+.. . ..++|||||
T Consensus 115 ~~i~~~Fs~~l~~~--~~g~l~~G~~~-~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~--~---~~~~ivDTG 185 (273)
T cd05475 115 GIIKNVIGHCLSSN--GGGFLFFGDDL-VPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG--K---GLEVVFDSG 185 (273)
T ss_pred CCcCceEEEEccCC--CCeEEEECCCC-CCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC--C---CceEEEECC
Confidence 2 99999873 46999999643 5668899999987652 57899999999999985431 1 256999999
Q ss_pred CcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCC---cEEEecCCCeEEEeCCCe
Q 011649 360 TIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGG---VDLELDVRGTLVVESVRQ 436 (480)
Q Consensus 360 T~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~ 436 (480)
|++++||+++| +|+|+|+|+++ ++++|++++|+++...+.
T Consensus 186 Tt~t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~ 228 (273)
T cd05475 186 SSYTYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGN 228 (273)
T ss_pred CceEEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCC
Confidence 99999999876 58899999764 799999999999876677
Q ss_pred EEEEEEeCCC--CCCeeeechhhhceeEEEEeCCCCEEEEeeCCC
Q 011649 437 VCLGFALLPS--DPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC 479 (480)
Q Consensus 437 ~Cl~~~~~~~--~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C 479 (480)
.|+++....+ ..+.||||+.|||++|++||++++||||++++|
T Consensus 229 ~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 229 VCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 8998876542 235799999999999999999999999999999
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.3e-50 Score=415.84 Aligned_cols=301 Identities=21% Similarity=0.333 Sum_probs=241.2
Q ss_pred ceeeceeecCCCCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCccccc
Q 011649 117 AFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKI 194 (480)
Q Consensus 117 ~~~~p~~~g~~~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 194 (480)
...+|+..- .+..|+++|+||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+..
T Consensus 127 ~~~v~L~n~--~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~--------- 193 (453)
T PTZ00147 127 FDNVELKDL--ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKD--------- 193 (453)
T ss_pred CCeeecccc--CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEEC---------
Confidence 345666542 56899999999999999999999999999999999985 6654 78999999999875
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC---C--CCCCceee
Q 011649 195 LLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD---Q--NGASGIMG 269 (480)
Q Consensus 195 ~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~--~~~~GilG 269 (480)
+ |.|.+.|++| .+.|.+++|+|+|++..+ + ..|+|+.+..+. + ...+||||
T Consensus 194 -----------~-----~~f~i~Yg~G-svsG~~~~DtVtiG~~~v------~-~qF~~~~~~~~f~~~~~~~~~DGILG 249 (453)
T PTZ00147 194 -----------G-----TKVEMNYVSG-TVSGFFSKDLVTIGNLSV------P-YKFIEVTDTNGFEPFYTESDFDGIFG 249 (453)
T ss_pred -----------C-----CEEEEEeCCC-CEEEEEEEEEEEECCEEE------E-EEEEEEEeccCcccccccccccceec
Confidence 3 7899999999 589999999999988654 6 679998876542 2 36899999
Q ss_pred cCCCCccce------eec----ccce--eEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEE
Q 011649 270 LDRGPVSII------SKT----NISY--FFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGIS 336 (480)
Q Consensus 270 Lg~~~~Sl~------sQl----~~~~--FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIs 336 (480)
||++.+|.. .|| .... ||+||++.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ +.
T Consensus 250 LG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~ 324 (453)
T PTZ00147 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VH 324 (453)
T ss_pred ccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EE
Confidence 999876532 233 2222 9999987655689999999998 7889999999965 679999998 57
Q ss_pred EcceEeecCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEc
Q 011649 337 VGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFL 416 (480)
Q Consensus 337 Vgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 416 (480)
+|+... . ...+||||||++++||++++++|.+++.+.. .+.. + .+..+|+. ..+|+|+|+|+
T Consensus 325 vg~~~~--~-----~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~--~y~~~C~~------~~lP~~~f~f~ 386 (453)
T PTZ00147 325 FGNVSS--E-----KANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-P--LYVTTCNN------TKLPTLEFRSP 386 (453)
T ss_pred ECCEec--C-----ceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-C--eEEEeCCC------CCCCeEEEEEC
Confidence 776432 1 2469999999999999999999999886531 1111 1 23457763 46899999997
Q ss_pred CCcEEEecCCCeEEEeC--CCeEEE-EEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeCC
Q 011649 417 GGVDLELDVRGTLVVES--VRQVCL-GFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGN 478 (480)
Q Consensus 417 gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~ 478 (480)
| ..++|+|++|+.+.. ....|+ +|.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 387 g-~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 387 N-KVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred C-EEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5 999999999997643 345797 788765334579999999999999999999999999874
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=7.9e-50 Score=392.18 Aligned_cols=253 Identities=42% Similarity=0.778 Sum_probs=222.0
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCC
Q 011649 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSK 210 (480)
Q Consensus 131 ~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 210 (480)
+|+++|.||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 699999999999999999999999999986
Q ss_pred CCcceeeecCCCcEEEEEEEEEEEEeec--CCCcccccCCeEEEEEecCCCCC-CCCCceeecCCCCccceeecccc--e
Q 011649 211 ECPYDIAYVDGSGETGFWATDRMTIQEV--NGNGYFARYPFLLGCTDNNTGDQ-NGASGIMGLDRGPVSIISKTNIS--Y 285 (480)
Q Consensus 211 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~--~~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~--~ 285 (480)
|.|.+.|+||+.++|.+++|+|+|++. .. +++.|||+....+.. ...+||||||+...|+++|+..+ .
T Consensus 31 -~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~------~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~ 103 (265)
T cd05476 31 -CSYEYSYGDGSSTSGVLATETFTFGDSSVSV------PNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNK 103 (265)
T ss_pred -CceEeEeCCCceeeeeEEEEEEEecCCCCcc------CCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCe
Confidence 157789999989999999999999987 44 899999999987622 57899999999999999999887 4
Q ss_pred eEEEecCC--CCCceeEEeCCCCCcCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccC-----CCCEEEec
Q 011649 286 FFYCLHSP--YGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT-----KLSTEIDS 358 (480)
Q Consensus 286 FS~cL~~~--~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~-----~~~~iiDS 358 (480)
||+||++. ....|+|+||++|+.+.+++.|+|+..++..+.+|.|+|++|+|+++.+.++...+. ...+||||
T Consensus 104 Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DT 183 (265)
T cd05476 104 FSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDS 183 (265)
T ss_pred eEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeC
Confidence 99999875 345899999999866788999999998654467899999999999999875433221 35799999
Q ss_pred CCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEeCCCeEE
Q 011649 359 GTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVC 438 (480)
Q Consensus 359 GT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C 438 (480)
||++++||+++| |+|+|+|++|.++.+++++|+++...+..|
T Consensus 184 GTs~~~lp~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C 225 (265)
T cd05476 184 GTTLTYLPDPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVC 225 (265)
T ss_pred CCcceEcCcccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEE
Confidence 999999999887 789999986799999999999977677899
Q ss_pred EEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCC
Q 011649 439 LGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC 479 (480)
Q Consensus 439 l~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C 479 (480)
+++.... ..+.+|||++|||++|++||.+++|||||+++|
T Consensus 226 ~~~~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 226 LAILSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9988764 345799999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.4e-49 Score=407.95 Aligned_cols=300 Identities=21% Similarity=0.324 Sum_probs=238.8
Q ss_pred eeeceeecCCCCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCccccccCCCcccccc
Q 011649 118 FTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSTTCKIL 195 (480)
Q Consensus 118 ~~~p~~~g~~~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 195 (480)
..+|+..- .+..|+++|.||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+|++..
T Consensus 127 ~~~~l~d~--~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~---------- 192 (450)
T PTZ00013 127 DVIELDDV--ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKD---------- 192 (450)
T ss_pred Cceeeecc--CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccC----------
Confidence 34555432 56789999999999999999999999999999999984 8765 78999999999875
Q ss_pred ccCCCCCCCCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC---C--CCCCceeec
Q 011649 196 LEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD---Q--NGASGIMGL 270 (480)
Q Consensus 196 ~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~--~~~~GilGL 270 (480)
+ |.|.+.|++|+ +.|.+++|+|+|++... + +.||++.+..+. + ...+|||||
T Consensus 193 ----------~-----~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~------~-~~f~~~~~~~~~~~~~~~~~~dGIlGL 249 (450)
T PTZ00013 193 ----------G-----TKVDITYGSGT-VKGFFSKDLVTLGHLSM------P-YKFIEVTDTDDLEPIYSSSEFDGILGL 249 (450)
T ss_pred ----------C-----cEEEEEECCce-EEEEEEEEEEEECCEEE------c-cEEEEEEeccccccceecccccceecc
Confidence 3 78999999995 89999999999988654 5 678888765421 2 367999999
Q ss_pred CCCCccc------eeecccc----e--eEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEE
Q 011649 271 DRGPVSI------ISKTNIS----Y--FFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISV 337 (480)
Q Consensus 271 g~~~~Sl------~sQl~~~----~--FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsV 337 (480)
|+..++. +.|+..+ . ||+||++.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ +.+
T Consensus 250 g~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~ 324 (450)
T PTZ00013 250 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHF 324 (450)
T ss_pred cCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEE
Confidence 9987653 3344332 2 9999987655689999999998 7889999999975 679999998 777
Q ss_pred cceEeecCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcC
Q 011649 338 GGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLG 417 (480)
Q Consensus 338 gg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 417 (480)
|.... . ...+||||||+++++|+++++++.+++.... .+ ..+ .+..+|+. ..+|+|+|+|+|
T Consensus 325 G~~~~--~-----~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~--~y~~~C~~------~~lP~i~F~~~g 386 (450)
T PTZ00013 325 GKQTM--Q-----KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLP--FYVTTCDN------KEMPTLEFKSAN 386 (450)
T ss_pred Cceec--c-----ccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCC--eEEeecCC------CCCCeEEEEECC
Confidence 65432 1 2459999999999999999999988876431 11 111 23446752 468999999976
Q ss_pred CcEEEecCCCeEEEe--CCCeEEE-EEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeCC
Q 011649 418 GVDLELDVRGTLVVE--SVRQVCL-GFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGN 478 (480)
Q Consensus 418 g~~~~l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~ 478 (480)
.+++|+|++|+.+. .++..|+ ++.+.+.+.+.||||++|||++|+|||.+++|||||+++
T Consensus 387 -~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 387 -NTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred -EEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999999998753 2356897 787755444579999999999999999999999999874
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.1e-47 Score=379.46 Aligned_cols=261 Identities=28% Similarity=0.429 Sum_probs=215.2
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCCC
Q 011649 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKE 211 (480)
Q Consensus 132 Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~ 211 (480)
|+++|+||||+|++.|++||||+++||+|..|..|..+..+.|||++|+|++..+ +
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-------------------~----- 56 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-------------------G----- 56 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-------------------C-----
Confidence 7899999999999999999999999999999998876666789999999998651 2
Q ss_pred CcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC-C--CCCCceeecCCCCcccee---------
Q 011649 212 CPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD-Q--NGASGIMGLDRGPVSIIS--------- 279 (480)
Q Consensus 212 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~s--------- 279 (480)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||++...+. + ...+||||||+...+...
T Consensus 57 ~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~------~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~ 130 (278)
T cd06097 57 ATWSISYGDGSSASGIVYTDTVSIGGVEV------PNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFE 130 (278)
T ss_pred cEEEEEeCCCCeEEEEEEEEEEEECCEEE------CCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHH
Confidence 78999999998799999999999988765 89999999987652 2 578999999998665322
Q ss_pred eccc----ceeEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCCCE
Q 011649 280 KTNI----SYFFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLST 354 (480)
Q Consensus 280 Ql~~----~~FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~ 354 (480)
++.. ..||+||.+ ...|.|+|||+|+ ++.+++.|+|+..+ ..+|.|++++|+|+++...... ...+
T Consensus 131 ~l~~~~~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~----~~~~ 201 (278)
T cd06097 131 NALSSLDAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRS----GFSA 201 (278)
T ss_pred HHHHhccCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecC----CceE
Confidence 2222 229999986 3479999999998 88999999999763 5689999999999998443222 2569
Q ss_pred EEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEeCC
Q 011649 355 EIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESV 434 (480)
Q Consensus 355 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 434 (480)
||||||++++||++++++|.+++.+.. +.... .+|.++|... +|+|+|+|
T Consensus 202 iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~~~~-------~~~~~~C~~~--~P~i~f~~------------------- 251 (278)
T cd06097 202 IADTGTTLILLPDAIVEAYYSQVPGAY--YDSEY-------GGWVFPCDTT--LPDLSFAV------------------- 251 (278)
T ss_pred EeecCCchhcCCHHHHHHHHHhCcCCc--ccCCC-------CEEEEECCCC--CCCEEEEE-------------------
Confidence 999999999999999999998884321 22221 2344555433 89999999
Q ss_pred CeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 435 RQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 435 ~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
.||||++|||++|+|||++++|||||+
T Consensus 252 ---------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.1e-46 Score=371.95 Aligned_cols=269 Identities=24% Similarity=0.362 Sum_probs=223.8
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCC
Q 011649 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSK 210 (480)
Q Consensus 131 ~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 210 (480)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999998
Q ss_pred CCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCCCCCCceeecCCCCc-----------ccee
Q 011649 211 ECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPV-----------SIIS 279 (480)
Q Consensus 211 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~-----------Sl~s 279 (480)
.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+++.. ..+||||||+.+. +++.
T Consensus 31 --~~~~~Y~~g~~~~G~~~~D~v~~g~~~~------~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~ 98 (295)
T cd05474 31 --DFSISYGDGTSASGTWGTDTVSIGGATV------KNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPI 98 (295)
T ss_pred --eeEEEeccCCcEEEEEEEEEEEECCeEe------cceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHH
Confidence 1567899987899999999999988765 899999999853 5799999999876 5777
Q ss_pred ecccce------eEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCC--CCeeEEEEEeeEEEcceEeecCccccC
Q 011649 280 KTNISY------FFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPE--QSEFYHITLTGISVGGERLPLKASYFT 350 (480)
Q Consensus 280 Ql~~~~------FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~--~~~~y~v~l~gIsVgg~~l~i~~~~~~ 350 (480)
|+..+. ||+||.+.+...|.|+|||+|+ ++.+++.|+|+..++. ...+|.|++++|+|+++.+..+... .
T Consensus 99 ~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~-~ 177 (295)
T cd05474 99 ALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLS-K 177 (295)
T ss_pred HHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccC-C
Confidence 776432 9999998655689999999997 7789999999987542 2378999999999999987532211 1
Q ss_pred CCCEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEE
Q 011649 351 KLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV 430 (480)
Q Consensus 351 ~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 430 (480)
...+||||||++++||+++|++|.+++.+... ...+ .+..+|+. ... |.|+|+|+| +++.|++++|++
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~---~~~~--~~~~~C~~-----~~~-p~i~f~f~g-~~~~i~~~~~~~ 245 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATYD---SDEG--LYVVDCDA-----KDD-GSLTFNFGG-ATISVPLSDLVL 245 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEEc---CCCc--EEEEeCCC-----CCC-CEEEEEECC-eEEEEEHHHhEe
Confidence 36799999999999999999999999987642 1112 34556764 334 999999976 999999999999
Q ss_pred EeC----CCeEEE-EEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 431 VES----VRQVCL-GFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 431 ~~~----~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
+.. ....|+ +|.+... +.+|||++|||++|++||.+++|||||++
T Consensus 246 ~~~~~~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 246 PASTDDGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccccCCCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 864 367895 8887653 47999999999999999999999999985
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.8e-44 Score=354.64 Aligned_cols=264 Identities=33% Similarity=0.579 Sum_probs=221.0
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCC--CCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPF--FDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 132 Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------------ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------------ 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------------
Confidence 789999999999999999999999999999999876554444 677776655432
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC--CCCCceeecCCCC------ccceeec
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ--NGASGIMGLDRGP------VSIISKT 281 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~------~Sl~sQl 281 (480)
.|.|.+.|++| .+.|.+++|+|+|++... +++.|||++...+.+ ...+||||||+.. .++++|+
T Consensus 57 -~~~~~~~Y~~g-~~~g~~~~D~v~~~~~~~------~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l 128 (283)
T cd05471 57 -GCTFSITYGDG-SVTGGLGTDTVTIGGLTI------PNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQL 128 (283)
T ss_pred -CCEEEEEECCC-eEEEEEEEeEEEECCEEE------eceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHH
Confidence 38999999998 689999999999988765 899999999987633 6789999999988 7888887
Q ss_pred ccce------eEEEecCC--CCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCC
Q 011649 282 NISY------FFYCLHSP--YGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKL 352 (480)
Q Consensus 282 ~~~~------FS~cL~~~--~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~ 352 (480)
..+. ||+||.+. ....|.|+||++|+ ++.+++.|+|+... ...+|.|.+++|.|+++....... ..
T Consensus 129 ~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~---~~ 203 (283)
T cd05471 129 KSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG---GG 203 (283)
T ss_pred HHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC---Cc
Confidence 7642 99999985 34689999999997 67899999999875 367899999999999984111111 25
Q ss_pred CEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEe
Q 011649 353 STEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE 432 (480)
Q Consensus 353 ~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 432 (480)
.+||||||++++||+++|++|.+++.+.+.. ...|+...+.....+|.|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~p~i~f~f----------------- 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSPCDTLPDITFTF----------------- 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCcccCcCCCEEEEE-----------------
Confidence 6999999999999999999999999887532 2244555555567899999999
Q ss_pred CCCeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEEee
Q 011649 433 SVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGP 476 (480)
Q Consensus 433 ~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~ 476 (480)
.+|||++|||++|++||.++++||||+
T Consensus 257 -----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 599999999999999999999999985
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.6e-45 Score=365.32 Aligned_cols=294 Identities=29% Similarity=0.490 Sum_probs=240.9
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCC-CCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHC-SQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 131 ~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C-~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|+|++|+|++.. +
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~--------------------~--- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ--------------------G--- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE--------------------E---
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc--------------------e---
Confidence 699999999999999999999999999999999875 2233479999999998876 2
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCC---CCCCCceeecCCCC-------cccee
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGD---QNGASGIMGLDRGP-------VSIIS 279 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~~~~~GilGLg~~~-------~Sl~s 279 (480)
+.+.+.|++|+ ++|.+++|+|+|++..+ .++.||++....+. ....+||||||+.. .+++.
T Consensus 58 --~~~~~~y~~g~-~~G~~~~D~v~ig~~~~------~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~ 128 (317)
T PF00026_consen 58 --KPFSISYGDGS-VSGNLVSDTVSIGGLTI------PNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLD 128 (317)
T ss_dssp --EEEEEEETTEE-EEEEEEEEEEEETTEEE------EEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHH
T ss_pred --eeeeeeccCcc-cccccccceEeeeeccc------cccceeccccccccccccccccccccccCCcccccccCCccee
Confidence 67999999996 99999999999988765 88999999996543 26789999999753 34555
Q ss_pred ecccce------eEEEecCCCCCceeEEeCCCCC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCC
Q 011649 280 KTNISY------FFYCLHSPYGSTGYITFGKPDT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKL 352 (480)
Q Consensus 280 Ql~~~~------FS~cL~~~~~~~G~L~fGg~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~ 352 (480)
|+..++ ||++|.+.....|.|+|||+|+ ++.++++|+|+.. ..+|.|.+++|++++........ .
T Consensus 129 ~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~ 200 (317)
T PF00026_consen 129 QLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----Q 200 (317)
T ss_dssp HHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----E
T ss_pred cchhhccccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----e
Confidence 655443 9999998765689999999998 7889999999985 77899999999999993322221 2
Q ss_pred CEEEecCCcceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEe
Q 011649 353 STEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE 432 (480)
Q Consensus 353 ~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 432 (480)
.++|||||++++||.+++++|.+++.+.... ..|.++|.....+|.|+|.|++ .++.|++++|+++.
T Consensus 201 ~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------------~~~~~~c~~~~~~p~l~f~~~~-~~~~i~~~~~~~~~ 267 (317)
T PF00026_consen 201 QAILDTGTSYIYLPRSIFDAIIKALGGSYSD------------GVYSVPCNSTDSLPDLTFTFGG-VTFTIPPSDYIFKI 267 (317)
T ss_dssp EEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------------SEEEEETTGGGGSEEEEEEETT-EEEEEEHHHHEEEE
T ss_pred eeecccccccccccchhhHHHHhhhcccccc------------eeEEEecccccccceEEEeeCC-EEEEecchHhcccc
Confidence 3999999999999999999999999876421 2244455555678999999975 99999999999987
Q ss_pred CC--CeEEE-EEEeC--CCCCCeeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 433 SV--RQVCL-GFALL--PSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 433 ~~--~~~Cl-~~~~~--~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
.. ...|+ +|... ....+.+|||.+|||++|++||.+++|||||++
T Consensus 268 ~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 268 EDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 53 34896 67662 233467999999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=5.4e-33 Score=252.97 Aligned_cols=160 Identities=44% Similarity=0.838 Sum_probs=127.8
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCCC
Q 011649 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKE 211 (480)
Q Consensus 132 Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~ 211 (480)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|+++.|...... .....|.+..
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~---~~~~~~~~~~ 68 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF---CPCCCCSNNS 68 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSS---BTCCTCESSE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccc---cccCCCCcCc
Confidence 89999999999999999999999999999 23899999999999999999999987630 0011223688
Q ss_pred CcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCCCCCCceeecCCCCccceeec---ccceeEE
Q 011649 212 CPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKT---NISYFFY 288 (480)
Q Consensus 212 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQl---~~~~FS~ 288 (480)
|.|.+.|+|++.+.|.+++|+|+++....+. ....++.|||++.+.+.+...+||||||++++||++|+ ....|||
T Consensus 69 C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~-~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSy 147 (164)
T PF14543_consen 69 CPYSQSYGDGSSSSGFLASDTLTFGSSSGGS-NSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSY 147 (164)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEEEESSSS-EEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEE
T ss_pred ccceeecCCCccccCceEEEEEEecCCCCCC-ceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEE
Confidence 9999999999999999999999998864211 12289999999999998889999999999999999999 4445999
Q ss_pred EecC-CCCCceeEEeCC
Q 011649 289 CLHS-PYGSTGYITFGK 304 (480)
Q Consensus 289 cL~~-~~~~~G~L~fGg 304 (480)
||++ .....|+|+||+
T Consensus 148 CL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 148 CLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EB-S-SSSSEEEEEECS
T ss_pred ECCCCCCCCCEEEEeCc
Confidence 9999 456699999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=1.4e-28 Score=223.48 Aligned_cols=149 Identities=42% Similarity=0.674 Sum_probs=122.0
Q ss_pred eEEEEEeeEEEcceEeecCcccc----CCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhcc--C-CCCccccccccee
Q 011649 327 FYHITLTGISVGGERLPLKASYF----TKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYK--M-GKGIEDLFDTCYD 399 (480)
Q Consensus 327 ~y~v~l~gIsVgg~~l~i~~~~~----~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~~C~~ 399 (480)
+|+|+|++|+||++++++++..| ..+++||||||++|+||+++|++|+++|.+++.... + .... ..++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~-~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPF-SGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE----TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccC-CCCCceee
Confidence 59999999999999999999987 258999999999999999999999999999997542 2 2333 67889999
Q ss_pred cCC----CcccccceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEeC-CCCCCeeeechhhhceeEEEEeCCCCEEEE
Q 011649 400 LSA----YKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALL-PSDPNSILLGNVQQRGYEVHYDVAGRRLGF 474 (480)
Q Consensus 400 ~~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~~~~IlG~~f~~~~~vvfD~~~~riGF 474 (480)
.+. .....+|+|+|||.||++++|++++|+++.+++..|++|..+ .+..+..|||+.+|++++++||++++||||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF 159 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGF 159 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEE
Confidence 987 355789999999998899999999999999888999999998 233468999999999999999999999999
Q ss_pred ee
Q 011649 475 GP 476 (480)
Q Consensus 475 a~ 476 (480)
+|
T Consensus 160 ~~ 161 (161)
T PF14541_consen 160 AP 161 (161)
T ss_dssp EE
T ss_pred eC
Confidence 86
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=7.5e-23 Score=173.31 Aligned_cols=105 Identities=32% Similarity=0.577 Sum_probs=92.2
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCC-CCCCCCccccccCCCccccccccCCCCCCCCCCCCCCC
Q 011649 134 IVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFF-DPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKEC 212 (480)
Q Consensus 134 ~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c 212 (480)
++|.||||+|++.|+|||||+++||+|.+|..|..+..+.| ||++|++++.. . |
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~--------------------~-----~ 55 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN--------------------G-----C 55 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC--------------------C-----c
Confidence 47999999999999999999999999999988766555667 99999998865 2 8
Q ss_pred cceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC---CCCCceeec
Q 011649 213 PYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ---NGASGIMGL 270 (480)
Q Consensus 213 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGL 270 (480)
.|.+.|++| .+.|.+++|+|+|++... +++.|||++...+.+ ...+|||||
T Consensus 56 ~~~~~Y~~g-~~~g~~~~D~v~ig~~~~------~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 56 TFSITYGTG-SLSGGLSTDTVSIGDIEV------VGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEeCCC-eEEEEEEEEEEEECCEEE------CCEEEEEEEecCCccccccccccccCC
Confidence 999999999 578999999999988764 899999999997753 578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.64 E-value=0.00013 Score=59.24 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=65.1
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 011649 130 DEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSS 209 (480)
Q Consensus 130 ~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 209 (480)
+.|++++.|+ ++++.+++|||++.+|+.-.-...+.. ... ..
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~~---------------------~~--- 42 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL------------PLT---------------------LG--- 42 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC------------Ccc---------------------CC---
Confidence 3589999999 799999999999999997542211110 000 00
Q ss_pred CCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCCCCCCceeecCC
Q 011649 210 KECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDR 272 (480)
Q Consensus 210 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 272 (480)
....+...+|.........+.+++++... .++.+........ ..+||||+..
T Consensus 43 --~~~~~~~~~G~~~~~~~~~~~i~ig~~~~------~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 --GKVTVQTANGRVRAARVRLDSLQIGGITL------RNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred --CcEEEEecCCCccceEEEcceEEECCcEE------eccEEEEeCCccc---CCceEeChHH
Confidence 35566777776666666688999988754 7777777665432 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.49 E-value=0.11 Score=44.56 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKC 207 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 207 (480)
.++.|++++.|. ++++.+++|||++.+-+...--.... .++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~~--------------------------~- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNRL--------------------------G- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCcccC--------------------------C-
Confidence 678999999998 78999999999999877643211110 111000 0
Q ss_pred CCCCCcceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCCCCCCceeecCC
Q 011649 208 SSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDR 272 (480)
Q Consensus 208 ~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 272 (480)
-...+.=..|......+.-|.+.+++... .++.+....... ..+|+||+.+
T Consensus 53 ----~~~~~~ta~G~~~~~~~~l~~l~iG~~~~------~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 53 ----YTVTVSTANGQIKAARVTLDRVAIGGIVV------NDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred ----ceEEEEeCCCcEEEEEEEeCEEEECCEEE------eCcEEEEeCCCc----CCceEcCHHH
Confidence 12222223453344456788999988775 888877765432 2479999864
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.18 E-value=1.1 Score=38.49 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.5
Q ss_pred CeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 325 SEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 325 ~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
.++|++. +.|+|+++. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667665 678888543 99999999999999988776
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=93.95 E-value=0.26 Score=39.09 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=51.9
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCCCCc
Q 011649 134 IVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECP 213 (480)
Q Consensus 134 ~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c~ 213 (480)
+++.|+ .+++.+++|||++.+.+.-.-...... .+... ...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~~------~~~~~-------------------------------~~~ 41 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLGL------KPRPK-------------------------------SVP 41 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcCC------CCcCC-------------------------------cee
Confidence 356777 689999999999988776443211110 00000 012
Q ss_pred ceeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCCCCCCceeecC
Q 011649 214 YDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLD 271 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg 271 (480)
..+.-.+|.........+.+++++... .++.|-..... ...+||||+-
T Consensus 42 ~~~~~~~g~~~~~~~~~~~i~ig~~~~------~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 42 ISVSGAGGSVTVYRGRVDSITIGGITL------KNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred EEEEeCCCCEEEEEEEEEEEEECCEEE------EeEEEEEECCC----CCCEEEeCCc
Confidence 233333444444556667899987654 66776666521 3578999974
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.74 E-value=1.2 Score=38.22 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=57.1
Q ss_pred EEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhcc-CCCCcccccccceecCCCcccccceEEE
Q 011649 335 ISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYK-MGKGIEDLFDTCYDLSAYKTVVVPKITI 413 (480)
Q Consensus 335 IsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 413 (480)
+.|+|+.+. ++||||.+.+.++++..+++--...... .+. ...+. +.. .+ ........+
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~-g~~-~~-------~g~~~~~~l 80 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGV-GTQ-KI-------LGRIHLAQV 80 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecC-CCc-EE-------EeEEEEEEE
Confidence 667887653 8999999999999999887531111000 000 01111 000 00 011223444
Q ss_pred EEcCCcEEEecCCCeEEEeCCCeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEEEE
Q 011649 414 HFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGF 474 (480)
Q Consensus 414 ~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~riGF 474 (480)
.++| ..+.+ + +.+.+.. .-..|||..||+.+-.+.|..+++|-|
T Consensus 81 ~i~~-~~~~~---~-----------~~Vl~~~--~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 81 KIGN-LFLPC---S-----------FTVLEDD--DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EECC-EEeee---E-----------EEEECCC--CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 4433 33211 1 1222221 224899999999999999999998853
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=89.90 E-value=1.6 Score=37.47 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKP 162 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~ 162 (480)
....+++++.|+ ++++.+++|||+..+++.-.-
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 346688999998 889999999999999886543
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.88 E-value=0.36 Score=38.94 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCC
Q 011649 132 YYIVVAIGKPKQYVSLLLDTGSGITWTQCKP 162 (480)
Q Consensus 132 Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~ 162 (480)
|++++.|+ ++++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889998 899999999999999997653
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.21 E-value=2.4 Score=35.47 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred eeeechhhhceeEEEEeCCCCEE
Q 011649 450 SILLGNVQQRGYEVHYDVAGRRL 472 (480)
Q Consensus 450 ~~IlG~~f~~~~~vvfD~~~~ri 472 (480)
..+||..||+.+-++.|..++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 68999999999999999987753
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.37 E-value=1.9 Score=33.23 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=30.4
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH 165 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~ 165 (480)
..+.+++.+.|| ++.+.+++|||++...+...-+..
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~r 40 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAKR 40 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHHH
Confidence 457899999999 699999999999999887665433
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.33 E-value=1.6 Score=34.31 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.9
Q ss_pred EEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 335 ISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 335 IsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
++|+|+++. ++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 677887653 99999999999999998887
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=82.96 E-value=13 Score=32.41 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.8
Q ss_pred eeeechhhhceeEEEEeCCCCEEEEeeC
Q 011649 450 SILLGNVQQRGYEVHYDVAGRRLGFGPG 477 (480)
Q Consensus 450 ~~IlG~~f~~~~~vvfD~~~~riGFa~~ 477 (480)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4999999999999999999999999754
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.54 E-value=2.3 Score=34.16 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.3
Q ss_pred eEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 334 GISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 334 gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
.+.|+|+.+. ..+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3778898874 89999999999999999877
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.04 E-value=2.4 Score=34.45 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=23.3
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCCC
Q 011649 133 YIVVAIGKPKQYVSLLLDTGSGITWTQCKP 162 (480)
Q Consensus 133 ~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~ 162 (480)
+++|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4677777 789999999999999997653
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.30 E-value=4.5 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 335 ISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 335 IsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
+.|+|+.+. +++|||.+..+++++..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 678887764 99999999999999999887
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=75.54 E-value=5.6 Score=31.54 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=24.7
Q ss_pred eEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 334 GISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 334 gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
.+.|+++++. ++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 3677877653 99999999999999887765
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.00 E-value=7.1 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.9
Q ss_pred EEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 335 ISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 335 IsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 677888764 89999999999999988775
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.91 E-value=5.9 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCC
Q 011649 135 VVAIGKPKQYVSLLLDTGSGITWTQCK 161 (480)
Q Consensus 135 ~i~iGTP~q~~~vi~DTGS~~~Wv~c~ 161 (480)
.+.|+ +|.+.+++|||+|.+-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 89999999999999998754
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=64.36 E-value=1.1e+02 Score=27.69 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCcEEeeceeC---CCCCeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 310 KKFVKYTPIVTT---PEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 310 ~~~~~~tpl~~~---~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
...+...|++.+ |....-+.+ .+.+.|..+. ++||||++...+-.+..+.|
T Consensus 14 ~~~~~~~PIV~~~~~Pevg~T~~v---~l~~~~t~i~----------vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 14 KSSITTCPIVHYIAIPEVGKTAIV---QLNCKGTPIK----------VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred cceeeeeeeEEEeeccccCcEEEE---EEeecCcEEE----------EEEeCCCccceeehhhHHhh
Confidence 345666777663 222222333 3455555553 99999999999988888777
No 45
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=64.00 E-value=80 Score=32.35 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=32.3
Q ss_pred eecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEE----------EEecCCC----CCCCCCceeecCCCC
Q 011649 217 AYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLG----------CTDNNTG----DQNGASGIMGLDRGP 274 (480)
Q Consensus 217 ~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FG----------c~~~~~g----~~~~~~GilGLg~~~ 274 (480)
.|.+| ++=|-+.+-.|+|++... ..+ +=+.+| |...... ....++||||+|.-+
T Consensus 83 ~F~sg-ytWGsVr~AdV~igge~A-~~i--PiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTIGGETA-SSI--PIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCc-ccccceEEEEEEEcCeec-ccc--CEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 56666 566889999999988754 111 323332 2222210 014689999999753
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.27 E-value=8.6 Score=30.54 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.0
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCCC
Q 011649 135 VVAIGKPKQYVSLLLDTGSGITWTQCKP 162 (480)
Q Consensus 135 ~i~iGTP~q~~~vi~DTGS~~~Wv~c~~ 162 (480)
.+.|. ++++.+++|||++.+-+.-..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45565 789999999999999997553
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=61.40 E-value=7.1 Score=31.64 Aligned_cols=27 Identities=11% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEcceEeecCccccCCCCEEEecCCcceeccHHHH
Q 011649 334 GISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVY 370 (480)
Q Consensus 334 gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y 370 (480)
.|.++|+.+. ++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3667777664 99999999999997643
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.42 E-value=35 Score=31.94 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.4
Q ss_pred CeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 325 SEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 325 ~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
+++|.++ ..|||+.+. .++|||.+.+.|+++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 6677766 789999875 89999999999999877765
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=52.46 E-value=18 Score=29.33 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEecCCcceeccHHHHHHHH
Q 011649 354 TEIDSGTIITRFPAPVYSALR 374 (480)
Q Consensus 354 ~iiDSGT~~t~Lp~~~y~~l~ 374 (480)
+.+|||.+...||...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999988873
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=52.37 E-value=76 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKC 207 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 207 (480)
.+|.|.++..|- +|++..++|||-..+-+.-..-.. --||.++. +
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l--------------------------~- 146 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSL--------------------------D- 146 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCcccc--------------------------C-
Confidence 789999999998 899999999999988776543111 12333221 0
Q ss_pred CCCCCcceeeecCCCcEEEEEEEEEEEEeecCC
Q 011649 208 SSKECPYDIAYVDGSGETGFWATDRMTIQEVNG 240 (480)
Q Consensus 208 ~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~ 240 (480)
-++.+.=.+|....--+--|.|.|++...
T Consensus 147 ----y~~~v~TANG~~~AA~V~Ld~v~IG~I~~ 175 (215)
T COG3577 147 ----YTITVSTANGRARAAPVTLDRVQIGGIRV 175 (215)
T ss_pred ----CceEEEccCCccccceEEeeeEEEccEEE
Confidence 24444455675444567789999988764
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.67 E-value=52 Score=28.26 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred EEEecCCc-ceeccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEe
Q 011649 354 TEIDSGTI-ITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE 432 (480)
Q Consensus 354 ~iiDSGT~-~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 432 (480)
.+||||-+ ++.+|+++++++- ++..... ..|- . ..-.+.....- +.+.+....+.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~---------~~~~~~~----~~~~-a------~~~~v~t~V~~-~~iki~g~e~~--- 84 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG---------LPLFSTI----RIVL-A------DGGVVKTSVAL-ATIKIDGVEKV--- 84 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC---------CCccCCh----hhhh-h------cCCEEEEEEEE-EEEEECCEEEE---
Confidence 58999999 9999999999872 2222111 0110 0 00011111111 33333333222
Q ss_pred CCCeEEEEEEeCCCCCCeeeechhhhceeEEEEeCCCCEE
Q 011649 433 SVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRL 472 (480)
Q Consensus 433 ~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~ri 472 (480)
++.-.++.....+||-..|+..-.++|...+++
T Consensus 85 -------~~Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 85 -------AFVLASDNLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred -------EEEEccCCCcccchhhhhhhhccEEEcCCcceE
Confidence 333333333345999999999999999866654
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.83 E-value=35 Score=29.39 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.4
Q ss_pred eEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHH
Q 011649 334 GISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 373 (480)
Q Consensus 334 gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l 373 (480)
.++++|+.+. +.||||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 3788999874 99999999999999998885
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.85 E-value=42 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.9
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011649 133 YIVVAIGKPKQYVSLLLDTGSGITWTQCK 161 (480)
Q Consensus 133 ~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~ 161 (480)
...+.++.-..++.++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555556688999999999999988754
No 54
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=29.45 E-value=53 Score=26.71 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.9
Q ss_pred EEEecCCcceeccHHHH
Q 011649 354 TEIDSGTIITRFPAPVY 370 (480)
Q Consensus 354 ~iiDSGT~~t~Lp~~~y 370 (480)
++||||+..++++..-.
T Consensus 14 ~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 14 VLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEeCCCCCEEEeCCCC
Confidence 99999999999987643
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=25.32 E-value=1.1e+02 Score=26.26 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=22.1
Q ss_pred CCeeEEEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011649 128 AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCK 161 (480)
Q Consensus 128 ~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~ 161 (480)
.....++++.|. ++++.+.+|||.-.+-+.-+
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 345678999999 89999999999988877544
No 56
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=23.41 E-value=51 Score=23.94 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHHHhccCC
Q 011649 1 MRILFKAFLLFIWLLRSSNN 20 (480)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (480)
||.+|+. ++++..|+++..
T Consensus 1 mk~~~~s-~~ala~l~sLA~ 19 (58)
T COG5567 1 MKNVFKS-LLALATLFSLAG 19 (58)
T ss_pred ChhHHHH-HHHHHHHHHHHh
Confidence 8889998 555555555443
No 57
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.01 E-value=1.2e+02 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=23.1
Q ss_pred CeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceeccHH
Q 011649 325 SEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAP 368 (480)
Q Consensus 325 ~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~ 368 (480)
+..|+++ |.||. |+..|. ++||||++.+++|..
T Consensus 8 ~~~Y~~~---i~iGt-----P~Q~~~---v~~DTGSs~lWv~~~ 40 (317)
T cd06098 8 DAQYFGE---IGIGT-----PPQKFT---VIFDTGSSNLWVPSS 40 (317)
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCccceEEecC
Confidence 4456664 77774 223343 999999999999964
Done!