BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011650
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 367 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 593 bits (1528), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 592 bits (1527), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNP+FLAEGTAI DL PDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 367 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 592 bits (1527), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 356/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKS VPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 127 VTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 367 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 591 bits (1523), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPT+T G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTETYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 586 bits (1511), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 356/468 (76%), Gaps = 13/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKST PV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 184
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 185 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 244
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 245 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 304
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 305 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 364
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 365 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 415
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 416 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 463
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/473 (56%), Positives = 354/473 (74%), Gaps = 16/473 (3%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
K+ C+GAGYVGGPT A+IA KCP I V VVD++ +I WNSD+LPIYEPGL+E+V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
G+NLFFS+D+ K + EA+++F+SVNTPTK G G G A DL Y ES +R IA + KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 123 VVEKSTVPVKTAEAIEKILMH---NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGR 179
VVEKSTVPVK AE+I IL N+ + FQ+LSNPEFLAEGTA+ DL PDRVLIGG
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGE 190
Query: 180 ETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239
+PEG++A+ L +Y +WVP +RI+ TN WS+E+SKL ANAFLAQRISS+N++SA+CEA
Sbjct: 191 SSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250
Query: 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQV 299
TGA++S+V+HA+G+D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+ V
Sbjct: 251 TGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGV 310
Query: 300 IKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKAR 359
I +N++Q+ RF +++++ +FNTV+ KKIAI GFAFKK+TGDTRE+ AI V K LM + A+
Sbjct: 311 ININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAK 370
Query: 360 LSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI-VASDAYEATKDSHGVCI 418
LS+YDP+V + + DL TS + ++I V SD Y A + +H + +
Sbjct: 371 LSVYDPKVQKSQMLNDLA------------SVTSAQDVERLITVESDPYAAARGAHAIVV 418
Query: 419 LTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDK 471
LTEWDEF L+Y +I+N+MQ PA +FDGR ILD + LR+IGF ++IG D+
Sbjct: 419 LTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ 471
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 262/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+ + IG+GYVG T A +A +V +D+ +I+ N+ +PI+EPGL+EV+ +
Sbjct: 9 MNLTIIGSGYVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
R L FSTD+E V ++ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAEAIEKILMHN--SRGIN--FQILSNPEFLAEGTAINDLFKPDRVLI 176
K++V+KSTVPV TAE + + RG + F ++SNPEFL EG A++D +PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGMKAIKALKDVYAHW-VPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235
G + G +A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANY 295
L + GAD+ V IG D RIG FL A G+GGSCF KD+ L+ + +G +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355
K V VN QK +++V+ ++G+ AI G AFK +T D RE P+ ++ L+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHG 415
AR++ YDP V QE +R + ++ D PS + ++ D +A +D+
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + E + + G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 268 bits (684), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 261/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+ + IG+G VG T A +A +V +D+ +I+ N+ +PI+EPGL+EV+ +
Sbjct: 9 MNLTIIGSGKVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
R L FSTD+E V ++ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAEAIEKILMHN--SRGIN--FQILSNPEFLAEGTAINDLFKPDRVLI 176
K++V+KSTVPV TAE + + RG + F ++SNPEFL EG A++D +PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGMKAIKALKDVYAHW-VPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235
G + G +A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANY 295
L + GAD+ V IG D RIG FL A G+GGSCF KD+ L+ + +G +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355
K V VN QK +++V+ ++G+ AI G AFK +T D RE P+ ++ L+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHG 415
AR++ YDP V QE +R + ++ D PS + ++ D +A +D+
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + E + + G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 261/473 (55%), Gaps = 27/473 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+ + IG+G VG T A +A +V +D+ +I+ N+ +PI+EPGL+EV+ +
Sbjct: 9 MNLTIIGSGSVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
R L FSTD+E V ++ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAEAIEKILMHN--SRGIN--FQILSNPEFLAEGTAINDLFKPDRVLI 176
K++V+KSTVPV TAE + + RG + F ++SNPEFL EG A++D +PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGMKAIKALKDVYAHW-VPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235
G + G +A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANY 295
L + GAD+ V IG D RIG FL A G+GGSCF KD+ L+ + +G +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355
K V VN QK +++V+ ++G+ AI G AFK +T D RE P+ ++ L+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHG 415
AR++ YDP V QE +R + ++ D PS + ++ D +A +D+
Sbjct: 360 RGARIAAYDP-VAQEEARRVIALDLAD----------HPSWLERLSFVDDEAQAARDADA 408
Query: 416 VCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + K +FDGRN+ + E + + G + IG+P
Sbjct: 409 LVIVTEWKIFKSPDFVAL-GRLWKTPVIFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 248/473 (52%), Gaps = 44/473 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVPRINAWNSDQLPIYEPGLEEVV 58
V+I IG GYVG +++ C S EV VD +I + + PIYEPGL+ +V
Sbjct: 9 VRIAXIGTGYVG-----LVSGACFSDFGHEVVCVDKDARKIELLHQNVXPIYEPGLDALV 63
Query: 59 -KQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS 117
+ L F+TD+ + V++A+ VF++V TP++ G G A DL+Y +AAR IA+
Sbjct: 64 ASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR---GDGHA-DLSYVFAAAREIAENL 119
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIG 177
++V KSTVPV T + +E+I+ + +++SNPEFL EG AI D +PDRV++G
Sbjct: 120 TKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179
Query: 178 GRETPEGMKAIKALKDVYAHWVPEDR--ILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235
E A + +++Y +L T ++E+ K AANAFLA +I+ +N ++
Sbjct: 180 ----TEDEFARQVXREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235
Query: 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANY 295
LCE GADV +VS IG D+RIG KFL+A G+GGSCF KD L L N P
Sbjct: 236 LCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYGGSCFPKDTLALXKTAADNETP--LRI 293
Query: 296 WKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355
+ ++VND +K +V+ + V GK + ILG FK +T D R+ P++ + L
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSLSIIAALQD 353
Query: 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHG 415
A + YDP+ ++ + + V + Y A +
Sbjct: 354 AGATVKAYDPEGVEQ----------------------ASKXLTDVEFVENPYAAADGADA 391
Query: 416 VCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ I+TEWD F+ LD +I N+++ P V D RNI +L + G +GKP
Sbjct: 392 LVIVTEWDAFRALDLTRIKNSLKSPVLV-DLRNIYPPAELERAGLQYTGVGKP 443
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 160/460 (34%), Positives = 246/460 (53%), Gaps = 47/460 (10%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVPRINAWNSDQLPIYEPGLEEVV 58
+ I +G GYVG +++ C + V +D +I NS +PIYEPGLE+++
Sbjct: 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMI 57
Query: 59 -KQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS 117
+ + L F T++E+ V EA+I+F++V TP G +AD++Y AAR I
Sbjct: 58 ARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAM 112
Query: 118 KSDKIVVEKSTVPVKT----AEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDR 173
++V KSTVPV + +AI++ L I+F I SNPEFL EG AI+D KPDR
Sbjct: 113 SRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDR 172
Query: 174 VLIGGRETPEGMKAIKALKDVYAHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNA 232
V++G + +A + + +Y + + R+L ++ SAE++K AANA LA RIS +N
Sbjct: 173 VVVG----VDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMND 228
Query: 233 MSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
++ LCE GADVS V IG DSRIG KFL G+GGSCF KD+ L+ E NG
Sbjct: 229 VANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR-- 286
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKG 352
+ V +VN+ QK+ ++ + V G+ +AI G +FK T D RE P++ + +
Sbjct: 287 MEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEK 346
Query: 353 LMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKD 412
L+ R+ +YDP V + Q+ L ++V +D Y+A +
Sbjct: 347 LLEVGCRVRVYDP-VAMKEAQKRLG--------------------DKVEYTTDMYDAVRG 385
Query: 413 SHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452
+ + +TEW EF+ D+ + M + V DGRN+ ++
Sbjct: 386 AEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNVYEL 424
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 210/437 (48%), Gaps = 44/437 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVV-K 59
M + +G GYVG + + V D++ + + + IYEPGLEE + +
Sbjct: 21 MASLSVLGLGYVG--VVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGR 78
Query: 60 QCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS 119
L F+ E+ V + F++V TP G +ADL Y E+AAR + ++
Sbjct: 79 ALSSGRLSFAESAEEAVAATDATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRA 133
Query: 120 D---KIVVEKSTVPVKTAEA-IEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVL 175
+VV KSTVP T E + + + + G+ F + SNPEFL EG+A+ D FKPDR++
Sbjct: 134 KGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRIV 193
Query: 176 IGGRETPEGMKAIKALKDVY-AHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234
IG + +A L DVY A P+ L AE+ K A+N FLA +IS N +
Sbjct: 194 IGAGDE----RAASFLLDVYKAVDAPK---LVMKPREAELVKYASNVFLALKISFANEVG 246
Query: 235 ALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAN 294
L + G D +V A+G D RIG + A +GFGGSCF KD L + E GL +
Sbjct: 247 LLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAIS 306
Query: 295 YWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM 354
K V++VN+Y R+ +++ + G+ + +LG AFK +T D RE+ ++V + L+
Sbjct: 307 --KAVLRVNEYM-PRYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLL 363
Query: 355 GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSH 414
AR+ ++DP + ++ + V D
Sbjct: 364 ERGARVYVHDP---------------------MAMEKARAVLGDSVTYVEDPQALLDQVE 402
Query: 415 GVCILTEWDEFKNLDYQ 431
GV I T W +++ LDY+
Sbjct: 403 GVIIATAWPQYEGLDYR 419
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 193/415 (46%), Gaps = 34/415 (8%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
++I G GYVG ++ + EV VD+S +I+ N + PI EPGLE +++Q
Sbjct: 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 62 RGKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----DV 116
R L +TD +K V ++++ F+ V TP+K G DL Y E+ R I +
Sbjct: 59 RQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREK 113
Query: 117 SKSDKIVVEKSTVPVKTAEAIEKILMHNS---RGINFQILSNPEFLAEGTAINDLFKPDR 173
S+ +VV + +P + ++ S G++F + +NPEFL E TAI D P
Sbjct: 114 SERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPM 173
Query: 174 VLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233
+IG + G L+++Y + I+ + AE+ K N + A +++ N +
Sbjct: 174 TVIGELDKQTG----DLLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227
Query: 234 SALCEATGADVSQVSHAIGFDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPE 291
+ +A G D +V I D ++ ++ FGGSC KD+ L Y + L
Sbjct: 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTY--RASQLDV 285
Query: 292 VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 351
+++ N Q + + + S +K+ +LG +FK T D RE+P +++ +
Sbjct: 286 EHPMLGSLMRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAE 340
Query: 352 GLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI-HLQPTSPSTINQVIVASD 405
L+G L I+D V + NK + I H+ S +++V+ +SD
Sbjct: 341 MLIGKGYELRIFDRNVEYARVH---GANKEYIESKIPHVSSLLVSDLDEVVASSD 392
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 189/414 (45%), Gaps = 34/414 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
+I G GYVG ++ + EV VD+S +I+ N + PI EPGLE +++Q R
Sbjct: 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 63 GKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----DVS 117
L +TD +K V ++++ F+ V TP+K G DL Y E+ R I + S
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKS 114
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILMHNS---RGINFQILSNPEFLAEGTAINDLFKPDRV 174
+ +VV + +P + ++ S G++F + +NPEFL E TAI D P
Sbjct: 115 ERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPXT 174
Query: 175 LIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234
+IG + G L+++Y + I+ + AE K N + A +++ N +
Sbjct: 175 VIGELDKQTG----DLLEEIYREL--DAPIIRKTVEVAEXIKYTCNVWHAAKVTFANEIG 228
Query: 235 ALCEATGADVSQVSHAIGFDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+ +A G D +V I D ++ + FGGSC KD+ L Y + L
Sbjct: 229 NIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSCLPKDVRALTY--RASQLDVE 286
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKG 352
+ + N Q + + + S +K+ +LG +FK T D RE+P +++ +
Sbjct: 287 HPXLGSLXRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAEX 341
Query: 353 LMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI-HLQPTSPSTINQVIVASD 405
L+G L I+D V + NK + I H+ S +++V+ +SD
Sbjct: 342 LIGKGYELRIFDRNVEYARVH---GANKEYIESKIPHVSSLLVSDLDEVVASSD 392
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 213/493 (43%), Gaps = 70/493 (14%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAV-----VDISVPRINAWNSDQLPIY--EPGLE 55
KI +G GYVG P AV+ P E + S +I N + P+ EPGLE
Sbjct: 20 KIGVLGMGYVGIPA-AVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLE 78
Query: 56 EVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD 115
E++ + F T + E + V +++ TP D + R +
Sbjct: 79 ELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANP---KDLEPDFSALIDGIRNVGK 135
Query: 116 VSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGI----NFQILSNPEFLAEGTAINDLFKP 171
K +VV +ST+ T E + K ++ G+ +F + PE + G + ++ +
Sbjct: 136 YLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREH 195
Query: 172 DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVN 231
DR+ +GG + +A+ ++Y+ + +++ + +AEV+K A N F +I+++N
Sbjct: 196 DRI-VGGIDEASTKRAV----ELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250
Query: 232 AMSALCEATGADVSQVSHAIGFDSRIGPKFLNA----SVGFGGSCFQKDILNLVYICECN 287
++ CEA G +V V G DS G A G GG C KD +L +
Sbjct: 251 QLALYCEAMGINVYDVR--TGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 ----GLPEVAN-YWKQVIKVNDYQKTRFVNRVVSS---MFNTVSGKKIAILGFAFKKDTG 339
PE A+ + KVND+ N V++ + + G K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPA---IDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396
D R TP+ D+C + A + ++DP V ++P
Sbjct: 369 DARNTPSEPYRDLC---LKAGASVMVHDPYV---------------VNYP---------- 400
Query: 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNL--DYQKIYNNMQKPAFVFDGRNILDVEK 454
V ++ + E +++ + +L + +L D+ K + P + DGRN+++ ++
Sbjct: 401 --GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANP-VIIDGRNVIEPDE 457
Query: 455 LRKIGFIVYSIGK 467
GF+ IG+
Sbjct: 458 FIGKGFVYKGIGR 470
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 197/460 (42%), Gaps = 74/460 (16%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC- 61
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL+EV ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 62 -RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
GK L ST E +++ ++V TP ++ D++ A I K
Sbjct: 71 SSGK-LKVSTTPEA----SDVFIIAVPTPNNDDQY---RSCDISLVMRALDSILPFLKKG 122
Query: 121 KIVVEKSTVPVKTAEAIEKILMHN---SRGINFQILSNPEFLAEGTAINDLFKPDRVLIG 177
++ +ST+ KT + K ++ N + G + ++ PE + G + +L +R+ IG
Sbjct: 123 NTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IG 181
Query: 178 GRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237
G I+A K VY +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 182 GVTK----ACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236
Query: 238 EATGADVSQVSHAIGFDSRI-----GPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+V V R+ GP G GG C D ++ PE
Sbjct: 237 NNLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIA-----KDPEN 284
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKG 352
A + ++N+ V+ + +SG K+ + G +K D D RE+PA D+ +
Sbjct: 285 AKLIQTGREINNSMPAYVVD-TTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYE- 342
Query: 353 LMGDKARLSI--YDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEAT 410
L+ + + + YDP V + ++ D+ A
Sbjct: 343 LLNQEPDIEVCAYDPHVELDFVEHDMS------------------------------HAV 372
Query: 411 KDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450
KD+ V IL++ EFKNL + K +FD +N++
Sbjct: 373 KDASLVLILSDHSEFKNLSDSHF--DKMKHKVIFDTKNVV 410
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 134/291 (46%), Gaps = 38/291 (13%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+KI G GYVG +IA EV +DI +++ N PI + ++E + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RMIADVSK 118
K L F +KH N +V + TPT Y+ ++ +I DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLI 176
+ +++ KST+PV I++ L GI+ I S PEFL EG A+ D P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGMKAIKALKDVYAHWVPEDRI------LCTNLWSAEVSKLAANAFLAQRISSV 230
G R A + +A + E I L T+ AE KL AN +LA R++
Sbjct: 197 GER---------SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYF 247
Query: 231 NAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLV 281
N + + E+ G + Q+ + D RIG + N S G+GG C KD L+
Sbjct: 248 NELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 298
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 134/291 (46%), Gaps = 38/291 (13%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+KI G GYVG +IA EV +DI +++ N PI + ++E + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RMIADVSK 118
K L F +KH N +V + TPT Y+ ++ +I DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLI 176
+ +++ KST+PV I++ L GI+ I S PEFL EG A+ D P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGMKAIKALKDVYAHWVPEDRI------LCTNLWSAEVSKLAANAFLAQRISSV 230
G R A + +A + E I L T+ AE KL AN +LA R++
Sbjct: 197 GER---------SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYF 247
Query: 231 NAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLV 281
N + + E+ G + Q+ + D RIG + N S G+GG C KD L+
Sbjct: 248 NELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 298
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 171/376 (45%), Gaps = 34/376 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+KI G+GYVG +++L+ EV +VDI +++ N+ PI + +E +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
+ ++ + D + +EA +V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
+++ KST+P+ + + + +I+ +PEFL E A+ D P R+++ E
Sbjct: 113 LII-KSTIPIGFITEMRQKFQTD------RIIFSPEFLRESKALYDNLYPSRIIVSCEEN 165
Query: 182 PEGMKAIKALKDVYA---------HWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232
+KA + +A + VP +L AE KL AN +LA R++ N
Sbjct: 166 DSP--KVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNE 220
Query: 233 MSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+ E+ + + I +D RIG + N S G+GG C KD L + N +P+
Sbjct: 221 LDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIPQT 278
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCK 351
+ ++ N+ +K+ ++++ + S K + + K ++ + RE+ DV
Sbjct: 279 L--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVID 336
Query: 352 GLMGDKARLSIYDPQV 367
L ++ IY+P +
Sbjct: 337 ILKSKDIKIIIYEPML 352
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 170/376 (45%), Gaps = 34/376 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+KI G+GYVG +++L+ EV +VDI +++ N+ PI + +E +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
+ ++ + D + +EA +V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
+++ KST+P+ + + + +I+ +PEFL E A+ D P R+++ E
Sbjct: 113 LII-KSTIPIGFITEMRQKFQTD------RIIFSPEFLRESKALYDNLYPSRIIVSCEEN 165
Query: 182 PEGMKAIKALKDVYA---------HWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232
+KA + +A + VP +L AE KL AN +LA R++ N
Sbjct: 166 DSP--KVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNE 220
Query: 233 MSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+ E+ + + I +D RIG + N S G+GG KD L + N +P+
Sbjct: 221 LDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQT 278
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCK 351
+ ++ N+ +K+ ++++ + S K + + K ++ + RE+ DV
Sbjct: 279 L--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVID 336
Query: 352 GLMGDKARLSIYDPQV 367
L ++ IY+P +
Sbjct: 337 ILKSKDIKIIIYEPML 352
>pdb|3V4B|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And L-Tartrate
pdb|3V3W|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And Glycerol
Length = 424
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 33 DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKT 92
D +P + W++++ Y P + V++ G ++ DV + TP +
Sbjct: 194 DADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRL-----------TPIEA 242
Query: 93 QGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR 146
LG +W A + A+ +S K++ + +T P+ E I H+ R
Sbjct: 243 ARLGKALEPYHLFWMEDA-VPAENQESFKLIRQHTTTPLAVGEVFNSI--HDCR 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,375,573
Number of Sequences: 62578
Number of extensions: 598252
Number of successful extensions: 1616
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 30
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)